Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34418.t1 | XP_003592377.1 | 97.3 | 438 | 12 | 0 | 1 | 438 | 53 | 490 | 4.00E-260 | 906.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34418.t1 | Q8GW72 | 53.2 | 436 | 192 | 5 | 1 | 430 | 52 | 481 | 1.4e-136 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34418.t1 | G7ID38 | 97.3 | 438 | 12 | 0 | 1 | 438 | 53 | 490 | 2.9e-260 | 906.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056432 | MS.gene34418 | 0.800315 | 1.53E-48 | -1.69E-46 |
| MS.gene060884 | MS.gene34418 | 0.806739 | 7.11E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34418.t1 | MTR_1g102230 | 97.260 | 438 | 12 | 0 | 1 | 438 | 53 | 490 | 0.0 | 882 |
| MS.gene34418.t1 | MTR_2g095700 | 50.000 | 436 | 205 | 7 | 1 | 429 | 72 | 501 | 9.46e-145 | 424 |
| MS.gene34418.t1 | MTR_2g095720 | 31.361 | 169 | 97 | 5 | 262 | 429 | 77 | 227 | 1.58e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34418.t1 | AT2G28100 | 53.211 | 436 | 192 | 5 | 1 | 430 | 52 | 481 | 3.25e-167 | 479 |
Find 101 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACCATTGGATTGAAATT+TGG | 0.127867 | 1.2:+76207465 | MS.gene34418:CDS |
| ATCATAATGTTCCTTCATTT+TGG | 0.188136 | 1.2:+76204994 | None:intergenic |
| GCTTTACAATGAATACTATT+TGG | 0.197540 | 1.2:+76205341 | MS.gene34418:CDS |
| ATCAAGATGTTAGGGAAATT+TGG | 0.202068 | 1.2:+76205616 | MS.gene34418:CDS |
| TGAAAGAGATGTTCGATTAA+TGG | 0.224854 | 1.2:-76205808 | None:intergenic |
| ATTATAGATATCAAGATGTT+AGG | 0.257376 | 1.2:+76205607 | MS.gene34418:intron |
| CAATTCGTCCAGGATGGTTT+TGG | 0.262464 | 1.2:+76207132 | MS.gene34418:CDS |
| GGACCATTGGATTGAAATTT+GGG | 0.266593 | 1.2:+76207466 | MS.gene34418:CDS |
| GGTAGCCAATCTGTCCCTTT+TGG | 0.269654 | 1.2:-76207092 | None:intergenic |
| GTGCCTCTTATTTCTTCTAT+TGG | 0.273115 | 1.2:+76207692 | MS.gene34418:CDS |
| GATATAAGACCAGTTGTATT+AGG | 0.280429 | 1.2:-76207248 | None:intergenic |
| CCAATTGGATTGAATATTGA+TGG | 0.296687 | 1.2:-76205063 | None:intergenic |
| AGCTGCCACATTGGCCCATT+GGG | 0.297882 | 1.2:-76205097 | None:intergenic |
| ATTCTGTCATTAGTAGTAAA+TGG | 0.309779 | 1.2:+76205199 | MS.gene34418:CDS |
| GTTAGGGAAATTTGGTTTGA+TGG | 0.313655 | 1.2:+76205624 | MS.gene34418:CDS |
| GGAGGAAAAGAGGGAGGGTT+TGG | 0.323052 | 1.2:+76207374 | MS.gene34418:CDS |
| ATTAGTAGTAAATGGCAAAA+TGG | 0.351247 | 1.2:+76205207 | MS.gene34418:CDS |
| AATCGAACATCTCTTTCAAT+TGG | 0.354601 | 1.2:+76205813 | MS.gene34418:CDS |
| CAGCTGCCACATTGGCCCAT+TGG | 0.354819 | 1.2:-76205098 | None:intergenic |
| GTGACCATTTGTGGTCATAT+TGG | 0.356144 | 1.2:+76207417 | MS.gene34418:CDS |
| AAGAGGCTTCATAGGCTTGA+TGG | 0.370002 | 1.2:+76207617 | MS.gene34418:CDS |
| GTAAACCTTGAGTGCCAAAA+AGG | 0.377456 | 1.2:-76207728 | None:intergenic |
| GGGGATGAAACAGGGACTGC+AGG | 0.403401 | 1.2:+76205768 | MS.gene34418:CDS |
| ATGCTGGACCTGATGTTAGA+TGG | 0.407697 | 1.2:+76205742 | MS.gene34418:CDS |
| TTGGTTACAAGAGGCTTCAT+AGG | 0.408848 | 1.2:+76207609 | MS.gene34418:CDS |
| GATAGACATGATTCTAGATA+TGG | 0.419077 | 1.2:+76205309 | MS.gene34418:CDS |
| CCATCAATATTCAATCCAAT+TGG | 0.419941 | 1.2:+76205063 | MS.gene34418:CDS |
| TGGGTTGTGTTGAGTCCAAT+TGG | 0.421398 | 1.2:-76205078 | None:intergenic |
| ATAATCAAAGGGACAACAAT+TGG | 0.424832 | 1.2:+76207590 | MS.gene34418:CDS |
| TTATAGATATCAAGATGTTA+GGG | 0.425767 | 1.2:+76205608 | MS.gene34418:intron |
| GAATGTTTAGTGTACTTAGA+TGG | 0.426757 | 1.2:-76205180 | None:intergenic |
| CACATTCAGTGACAGTGAAT+GGG | 0.427812 | 1.2:+76205023 | MS.gene34418:CDS |
| TGGGATCTATCTTTCACCTT+GGG | 0.427910 | 1.2:+76205287 | MS.gene34418:CDS |
| GTCAATGCAGCCACTCATAA+AGG | 0.434756 | 1.2:+76205255 | MS.gene34418:CDS |
| GATATTTATTACAAATCTGT+TGG | 0.439112 | 1.2:+76207194 | MS.gene34418:CDS |
| ACACATTCAGTGACAGTGAA+TGG | 0.440908 | 1.2:+76205022 | MS.gene34418:CDS |
| ATATTTATTACAAATCTGTT+GGG | 0.448093 | 1.2:+76207195 | MS.gene34418:CDS |
| GGACCTGATGTTAGATGGGT+GGG | 0.451903 | 1.2:+76205747 | MS.gene34418:CDS |
| AATATACCTCCTAATACAAC+TGG | 0.459105 | 1.2:+76207239 | MS.gene34418:CDS |
| TAGTAAATGGCAAAATGGTA+AGG | 0.461048 | 1.2:+76205212 | MS.gene34418:CDS |
| ATTAGAATACAAGAAGCAAT+TGG | 0.462230 | 1.2:+76207518 | MS.gene34418:CDS |
| GCCAATGTGGCAGCTGAAGC+AGG | 0.463082 | 1.2:+76205105 | MS.gene34418:CDS |
| TTGGGATCTATCTTTCACCT+TGG | 0.463871 | 1.2:+76205286 | MS.gene34418:CDS |
| CTCATAAAGGAATTGATGTT+GGG | 0.467433 | 1.2:+76205268 | MS.gene34418:CDS |
| CTGAACACTGGTGATCCAAA+AGG | 0.480861 | 1.2:+76207077 | MS.gene34418:CDS |
| GACCTGATGTTAGATGGGTG+GGG | 0.483980 | 1.2:+76205748 | MS.gene34418:CDS |
| GACCCCACGGGAAGATGATA+AGG | 0.487059 | 1.2:+76207439 | MS.gene34418:CDS |
| GGGTCCAATATGACCACAAA+TGG | 0.488108 | 1.2:-76207421 | None:intergenic |
| ATTGAAATTTGGGATAATGA+TGG | 0.496559 | 1.2:+76207476 | MS.gene34418:CDS |
| TAGCCTGAGAGGAGGAAAAG+AGG | 0.496786 | 1.2:+76207364 | MS.gene34418:CDS |
| ACTCATAAAGGAATTGATGT+TGG | 0.497734 | 1.2:+76205267 | MS.gene34418:CDS |
| GTGATCCAAAAGGGACAGAT+TGG | 0.503672 | 1.2:+76207087 | MS.gene34418:CDS |
| GATTTATGCCAAAACCATCC+TGG | 0.507336 | 1.2:-76207140 | None:intergenic |
| AATCCAATAGAAGAAATAAG+AGG | 0.511126 | 1.2:-76207695 | None:intergenic |
| TATCCCAAATTTCAATCCAA+TGG | 0.511652 | 1.2:-76207469 | None:intergenic |
| TTTCCTTATCATCTTCCCGT+GGG | 0.516315 | 1.2:-76207442 | None:intergenic |
| ATGATAAGGAAAAGGACCAT+TGG | 0.516958 | 1.2:+76207453 | MS.gene34418:CDS |
| GGATGAAACAGGGACTGCAG+GGG | 0.521831 | 1.2:+76205770 | MS.gene34418:CDS |
| TGGACTCAACACAACCCAAT+GGG | 0.523022 | 1.2:+76205083 | MS.gene34418:CDS |
| TGAACACTGGTGATCCAAAA+GGG | 0.523830 | 1.2:+76207078 | MS.gene34418:CDS |
| AGCCTGAGAGGAGGAAAAGA+GGG | 0.526697 | 1.2:+76207365 | MS.gene34418:CDS |
| ATACAAGAAGCAATTGGACT+TGG | 0.526995 | 1.2:+76207524 | MS.gene34418:CDS |
| GATGGTAAATCAATAATCAA+AGG | 0.528545 | 1.2:+76207578 | MS.gene34418:CDS |
| ACGGGAAGATGATAAGGAAA+AGG | 0.529325 | 1.2:+76207445 | MS.gene34418:CDS |
| CGGTATGAAATTTATGTGGA+TGG | 0.530893 | 1.2:+76207560 | MS.gene34418:CDS |
| ACCTGATGTTAGATGGGTGG+GGG | 0.535445 | 1.2:+76205749 | MS.gene34418:CDS |
| GGGATGAAACAGGGACTGCA+GGG | 0.538975 | 1.2:+76205769 | MS.gene34418:CDS |
| ATTAGATTTATAAAAGCTAG+AGG | 0.542281 | 1.2:+76207668 | MS.gene34418:CDS |
| TCCTGCTTCAGCTGCCACAT+TGG | 0.544247 | 1.2:-76205106 | None:intergenic |
| ATGGTAAATCAATAATCAAA+GGG | 0.544860 | 1.2:+76207579 | MS.gene34418:CDS |
| TGCTGGACCTGATGTTAGAT+GGG | 0.544993 | 1.2:+76205743 | MS.gene34418:CDS |
| TGTTGGATAGTGACCATTTG+TGG | 0.550799 | 1.2:+76207408 | MS.gene34418:CDS |
| ATGTTTCAATTCGTCCAGGA+TGG | 0.551993 | 1.2:+76207126 | MS.gene34418:CDS |
| CGAACGGTATGAAATTTATG+TGG | 0.552572 | 1.2:+76207556 | MS.gene34418:CDS |
| TGTGATGTTTCAATTCGTCC+AGG | 0.557675 | 1.2:+76207122 | MS.gene34418:CDS |
| AGTAAATGGCAAAATGGTAA+GGG | 0.562737 | 1.2:+76205213 | MS.gene34418:CDS |
| AGTGACAGTGAATGGGGCAC+AGG | 0.567340 | 1.2:+76205030 | MS.gene34418:CDS |
| TGGACCTGATGTTAGATGGG+TGG | 0.567902 | 1.2:+76205746 | MS.gene34418:CDS |
| ATTGAAACATCACATTCTGC+TGG | 0.577257 | 1.2:-76207113 | None:intergenic |
| GGACTGCAGGGGACACGTGT+TGG | 0.580171 | 1.2:+76205781 | MS.gene34418:CDS |
| AACATCAATTCCTTTATGAG+TGG | 0.581747 | 1.2:-76205265 | None:intergenic |
| GGACAACAATTGGTTACAAG+AGG | 0.582247 | 1.2:+76207600 | MS.gene34418:CDS |
| TTAACTGCAAAACACCATGA+TGG | 0.593261 | 1.2:+76205144 | MS.gene34418:CDS |
| GTGGTCATATTGGACCCCAC+GGG | 0.597817 | 1.2:+76207427 | MS.gene34418:CDS |
| GTTAAAGTTAGTAGCCTGAG+AGG | 0.598880 | 1.2:+76207353 | MS.gene34418:CDS |
| GCCAGAGACAAAATCCATCA+TGG | 0.599754 | 1.2:-76205158 | None:intergenic |
| TGTGGTCATATTGGACCCCA+CGG | 0.603037 | 1.2:+76207426 | MS.gene34418:CDS |
| TTGGACTCAACACAACCCAA+TGG | 0.610982 | 1.2:+76205082 | MS.gene34418:CDS |
| CTGAGAGGAGGAAAAGAGGG+AGG | 0.617702 | 1.2:+76207368 | MS.gene34418:CDS |
| TGATGGAGCAAAAGATCCCA+AGG | 0.618842 | 1.2:+76205641 | MS.gene34418:CDS |
| ATAAGACCAGTTGTATTAGG+AGG | 0.619708 | 1.2:-76207245 | None:intergenic |
| CACAACCCAATGGGCCAATG+TGG | 0.621945 | 1.2:+76205092 | MS.gene34418:CDS |
| CTAGAATCATGTCTATCCCA+AGG | 0.622150 | 1.2:-76205303 | None:intergenic |
| ATGTGTTGACACCAAAATGA+AGG | 0.623081 | 1.2:-76205005 | None:intergenic |
| GTTTGGTCCAGAAAACATGT+TGG | 0.626617 | 1.2:+76207391 | MS.gene34418:CDS |
| ACATTCAGTGACAGTGAATG+GGG | 0.629823 | 1.2:+76205024 | MS.gene34418:CDS |
| TGAGAGGAGGAAAAGAGGGA+GGG | 0.637912 | 1.2:+76207369 | MS.gene34418:CDS |
| AAAGTTAGTAGCCTGAGAGG+AGG | 0.643923 | 1.2:+76207356 | MS.gene34418:CDS |
| CAATGCAGGTATCTGAACAC+TGG | 0.649417 | 1.2:+76207065 | MS.gene34418:intron |
| TTCCTTATCATCTTCCCGTG+GGG | 0.651640 | 1.2:-76207441 | None:intergenic |
| GACTTGGTCAAAGAATCGAA+CGG | 0.716057 | 1.2:+76207540 | MS.gene34418:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAATACTTTTGAT+CGG | - | chr1.2:76206497-76206516 | None:intergenic | 10.0% |
| !!! | TGTAACTTTTATTAAAATTA+TGG | - | chr1.2:76205502-76205521 | None:intergenic | 10.0% |
| !! | AAACTAGTAAAATATTTAGT+GGG | + | chr1.2:76206911-76206930 | MS.gene34418:intron | 15.0% |
| !! | ATATTTATTACAAATCTGTT+GGG | + | chr1.2:76207195-76207214 | MS.gene34418:CDS | 15.0% |
| !! | CAATAAATTTGATAAAATCA+CGG | - | chr1.2:76205532-76205551 | None:intergenic | 15.0% |
| !! | TAAAATTGAATGTAATATGT+CGG | + | chr1.2:76206685-76206704 | MS.gene34418:intron | 15.0% |
| !!! | AATTATATTAAACAGTTTTG+AGG | + | chr1.2:76206538-76206557 | MS.gene34418:intron | 15.0% |
| !!! | ACATATTACATTCAATTTTA+AGG | - | chr1.2:76206685-76206704 | None:intergenic | 15.0% |
| !!! | CTATTTTATCATCAATTTTA+GGG | - | chr1.2:76206439-76206458 | None:intergenic | 15.0% |
| !!! | TCTATTTTATCATCAATTTT+AGG | - | chr1.2:76206440-76206459 | None:intergenic | 15.0% |
| !!! | TTAATATAATTTGTTCATGA+TGG | - | chr1.2:76206979-76206998 | None:intergenic | 15.0% |
| !!! | TTACATATTATTTTTCAGAT+TGG | + | chr1.2:76205673-76205692 | MS.gene34418:CDS | 15.0% |
| !!! | TTTTTCTTTTTCTTTTTTAG+AGG | + | chr1.2:76206844-76206863 | MS.gene34418:intron | 15.0% |
| !! | ATGGTAAATCAATAATCAAA+GGG | + | chr1.2:76207579-76207598 | MS.gene34418:CDS | 20.0% |
| !! | ATTAGATTTATAAAAGCTAG+AGG | + | chr1.2:76207668-76207687 | MS.gene34418:CDS | 20.0% |
| !! | ATTATAGATATCAAGATGTT+AGG | + | chr1.2:76205607-76205626 | MS.gene34418:intron | 20.0% |
| !! | CAAACTAGTAAAATATTTAG+TGG | + | chr1.2:76206910-76206929 | MS.gene34418:intron | 20.0% |
| !! | GATATTTATTACAAATCTGT+TGG | + | chr1.2:76207194-76207213 | MS.gene34418:CDS | 20.0% |
| !! | GTCAAATTCTTAATTATCAT+TGG | - | chr1.2:76205568-76205587 | None:intergenic | 20.0% |
| !! | TAATTGAAGACTTAATTAGT+TGG | - | chr1.2:76206218-76206237 | None:intergenic | 20.0% |
| !! | TTATAGATATCAAGATGTTA+GGG | + | chr1.2:76205608-76205627 | MS.gene34418:intron | 20.0% |
| !!! | AACAAAAGGAACTTTATTTT+AGG | + | chr1.2:76206389-76206408 | MS.gene34418:intron | 20.0% |
| !!! | ATCAAATACATTTGACTTTT+TGG | + | chr1.2:76206636-76206655 | MS.gene34418:intron | 20.0% |
| !!! | TTTGGCTTAATTGAATATTT+AGG | - | chr1.2:76206810-76206829 | None:intergenic | 20.0% |
| ! | AAACATGACATCAACAATTA+GGG | + | chr1.2:76206342-76206361 | MS.gene34418:intron | 25.0% |
| ! | AAGCAAAAGTAAAATGCATT+TGG | + | chr1.2:76206602-76206621 | MS.gene34418:intron | 25.0% |
| ! | AATCCAATAGAAGAAATAAG+AGG | - | chr1.2:76207698-76207717 | None:intergenic | 25.0% |
| ! | AATTGCATAATCATGATACA+TGG | + | chr1.2:76206781-76206800 | MS.gene34418:intron | 25.0% |
| ! | AGCATTCTAACATTAACATT+TGG | - | chr1.2:76206290-76206309 | None:intergenic | 25.0% |
| ! | AGTAAAATATTTAGTGGGAT+CGG | + | chr1.2:76206916-76206935 | MS.gene34418:intron | 25.0% |
| ! | ATTAGAATACAAGAAGCAAT+TGG | + | chr1.2:76207518-76207537 | MS.gene34418:CDS | 25.0% |
| ! | ATTAGTAGTAAATGGCAAAA+TGG | + | chr1.2:76205207-76205226 | MS.gene34418:CDS | 25.0% |
| ! | ATTCTGTCATTAGTAGTAAA+TGG | + | chr1.2:76205199-76205218 | MS.gene34418:CDS | 25.0% |
| ! | ATTGCATAATCATGATACAT+GGG | + | chr1.2:76206782-76206801 | MS.gene34418:intron | 25.0% |
| ! | CAAAAAGCAAAACAAATCAA+CGG | + | chr1.2:76206951-76206970 | MS.gene34418:intron | 25.0% |
| ! | CTTAATTATCATTGGATATC+TGG | - | chr1.2:76205560-76205579 | None:intergenic | 25.0% |
| ! | GATGGTAAATCAATAATCAA+AGG | + | chr1.2:76207578-76207597 | MS.gene34418:CDS | 25.0% |
| ! | GCTTTACAATGAATACTATT+TGG | + | chr1.2:76205341-76205360 | MS.gene34418:CDS | 25.0% |
| ! | TAAGTCCTTCCAAAATTTAA+TGG | + | chr1.2:76206263-76206282 | MS.gene34418:intron | 25.0% |
| ! | TCCTTTCTAAATCAAAAGTA+AGG | + | chr1.2:76206082-76206101 | MS.gene34418:intron | 25.0% |
| ! | TTAACATAGCTAGAATGATA+AGG | + | chr1.2:76205945-76205964 | MS.gene34418:intron | 25.0% |
| ! | TTCTAAATCAAAAGTAAGGT+AGG | + | chr1.2:76206086-76206105 | MS.gene34418:intron | 25.0% |
| !! | AAAAGTCAACACTACTATTT+TGG | - | chr1.2:76206828-76206847 | None:intergenic | 25.0% |
| !! | ACATTTGGACCATTAAATTT+TGG | - | chr1.2:76206275-76206294 | None:intergenic | 25.0% |
| !! | ATTGAAATTTGGGATAATGA+TGG | + | chr1.2:76207476-76207495 | MS.gene34418:CDS | 25.0% |
| !! | CTTTTGATCGGAATATAAAT+TGG | - | chr1.2:76206485-76206504 | None:intergenic | 25.0% |
| !!! | ACCTTACTTTTGATTTAGAA+AGG | - | chr1.2:76206086-76206105 | None:intergenic | 25.0% |
| !!! | ACTTAGTTTTTTTGGTGATT+CGG | - | chr1.2:76207165-76207184 | None:intergenic | 25.0% |
| !!! | GAACTTTATTTTAGGAATTG+AGG | + | chr1.2:76206397-76206416 | MS.gene34418:intron | 25.0% |
| !!! | GATTACATTTTGATCCTTTT+TGG | + | chr1.2:76207714-76207733 | MS.gene34418:CDS | 25.0% |
| !!! | TCAATTTTAAGGTACATCTT+CGG | - | chr1.2:76206674-76206693 | None:intergenic | 25.0% |
| !!! | TGTAGAATAAACCACTTTTT+TGG | - | chr1.2:76205895-76205914 | None:intergenic | 25.0% |
| !!! | TTATCATCAATTTTAGGGTT+AGG | - | chr1.2:76206434-76206453 | None:intergenic | 25.0% |
| !!! | TTTTTCAGATTGGTTTTCTA+TGG | + | chr1.2:76205683-76205702 | MS.gene34418:CDS | 25.0% |
| AAAGAGAGAACACTAACAAA+AGG | + | chr1.2:76206375-76206394 | MS.gene34418:intron | 30.0% | |
| AACATCAATTCCTTTATGAG+TGG | - | chr1.2:76205268-76205287 | None:intergenic | 30.0% | |
| AATATACCTCCTAATACAAC+TGG | + | chr1.2:76207239-76207258 | MS.gene34418:CDS | 30.0% | |
| AATCGAACATCTCTTTCAAT+TGG | + | chr1.2:76205813-76205832 | MS.gene34418:CDS | 30.0% | |
| ACTCATAAAGGAATTGATGT+TGG | + | chr1.2:76205267-76205286 | MS.gene34418:CDS | 30.0% | |
| ACTTAATTAGTTGGTTGCTT+AGG | - | chr1.2:76206209-76206228 | None:intergenic | 30.0% | |
| AGTAAATGGCAAAATGGTAA+GGG | + | chr1.2:76205213-76205232 | MS.gene34418:CDS | 30.0% | |
| ATAATCAAAGGGACAACAAT+TGG | + | chr1.2:76207590-76207609 | MS.gene34418:CDS | 30.0% | |
| ATAGCTAGAATGATAAGGTA+CGG | + | chr1.2:76205950-76205969 | MS.gene34418:intron | 30.0% | |
| ATCAAGATGTTAGGGAAATT+TGG | + | chr1.2:76205616-76205635 | MS.gene34418:CDS | 30.0% | |
| ATCCTAAGCAAAGAAAATGT+GGG | + | chr1.2:76206127-76206146 | MS.gene34418:intron | 30.0% | |
| CAAACATGACATCAACAATT+AGG | + | chr1.2:76206341-76206360 | MS.gene34418:intron | 30.0% | |
| CCAATTGGATTGAATATTGA+TGG | - | chr1.2:76205066-76205085 | None:intergenic | 30.0% | |
| CCATCAATATTCAATCCAAT+TGG | + | chr1.2:76205063-76205082 | MS.gene34418:CDS | 30.0% | |
| CTCATAAAGGAATTGATGTT+GGG | + | chr1.2:76205268-76205287 | MS.gene34418:CDS | 30.0% | |
| CTTAATTAGTTGGTTGCTTA+GGG | - | chr1.2:76206208-76206227 | None:intergenic | 30.0% | |
| GAATGTTTAGTGTACTTAGA+TGG | - | chr1.2:76205183-76205202 | None:intergenic | 30.0% | |
| GATAGACATGATTCTAGATA+TGG | + | chr1.2:76205309-76205328 | MS.gene34418:CDS | 30.0% | |
| GATATAAGACCAGTTGTATT+AGG | - | chr1.2:76207251-76207270 | None:intergenic | 30.0% | |
| TAGTAAATGGCAAAATGGTA+AGG | + | chr1.2:76205212-76205231 | MS.gene34418:CDS | 30.0% | |
| TATCCCAAATTTCAATCCAA+TGG | - | chr1.2:76207472-76207491 | None:intergenic | 30.0% | |
| TCATAGATTAAGTGCATGTT+TGG | + | chr1.2:76205441-76205460 | MS.gene34418:intron | 30.0% | |
| TGAAAGAGATGTTCGATTAA+TGG | - | chr1.2:76205811-76205830 | None:intergenic | 30.0% | |
| TTGCATAATCATGATACATG+GGG | + | chr1.2:76206783-76206802 | MS.gene34418:intron | 30.0% | |
| ! | ATATGTAACATTTTGTGCCT+TGG | - | chr1.2:76205661-76205680 | None:intergenic | 30.0% |
| ! | ATCAATATTTTCTCAGATGC+TGG | + | chr1.2:76205726-76205745 | MS.gene34418:CDS | 30.0% |
| ! | CAATTTTCTTCTCACACATA+TGG | - | chr1.2:76206766-76206785 | None:intergenic | 30.0% |
| ! | TATGTAACATTTTGTGCCTT+GGG | - | chr1.2:76205660-76205679 | None:intergenic | 30.0% |
| ! | TTGGACCATTAAATTTTGGA+AGG | - | chr1.2:76206271-76206290 | None:intergenic | 30.0% |
| !!! | AGTAGCTCACTTAGTTTTTT+TGG | - | chr1.2:76207173-76207192 | None:intergenic | 30.0% |
| ACCATAGATTTCAGTGTAAG+TGG | - | chr1.2:76205923-76205942 | None:intergenic | 35.0% | |
| AGGACCATTGGATTGAAATT+TGG | + | chr1.2:76207465-76207484 | MS.gene34418:CDS | 35.0% | |
| ATAAGACCAGTTGTATTAGG+AGG | - | chr1.2:76207248-76207267 | None:intergenic | 35.0% | |
| ATACAAGAAGCAATTGGACT+TGG | + | chr1.2:76207524-76207543 | MS.gene34418:CDS | 35.0% | |
| ATGATAAGGAAAAGGACCAT+TGG | + | chr1.2:76207453-76207472 | MS.gene34418:CDS | 35.0% | |
| ATTCATGCTAATCACAATGC+AGG | + | chr1.2:76207051-76207070 | MS.gene34418:intron | 35.0% | |
| ATTGAAACATCACATTCTGC+TGG | - | chr1.2:76207116-76207135 | None:intergenic | 35.0% | |
| CATATGGCTGGAAATAGTTT+AGG | - | chr1.2:76206750-76206769 | None:intergenic | 35.0% | |
| CATCCTAAGCAAAGAAAATG+TGG | + | chr1.2:76206126-76206145 | MS.gene34418:intron | 35.0% | |
| CGAACGGTATGAAATTTATG+TGG | + | chr1.2:76207556-76207575 | MS.gene34418:CDS | 35.0% | |
| CGGTATGAAATTTATGTGGA+TGG | + | chr1.2:76207560-76207579 | MS.gene34418:CDS | 35.0% | |
| GATTTATGAGACAACGAGTT+TGG | - | chr1.2:76206156-76206175 | None:intergenic | 35.0% | |
| GGACCATTGGATTGAAATTT+GGG | + | chr1.2:76207466-76207485 | MS.gene34418:CDS | 35.0% | |
| TTAACTGCAAAACACCATGA+TGG | + | chr1.2:76205144-76205163 | MS.gene34418:CDS | 35.0% | |
| ! | AACCCACATTTTCTTTGCTT+AGG | - | chr1.2:76206132-76206151 | None:intergenic | 35.0% |
| ! | ACTAGTTTGATACACACATG+AGG | - | chr1.2:76206899-76206918 | None:intergenic | 35.0% |
| ! | ATGTGTTGACACCAAAATGA+AGG | - | chr1.2:76205008-76205027 | None:intergenic | 35.0% |
| ! | CACATTTTCTTTGCTTAGGA+TGG | - | chr1.2:76206128-76206147 | None:intergenic | 35.0% |
| ! | GTGCCTCTTATTTCTTCTAT+TGG | + | chr1.2:76207692-76207711 | MS.gene34418:CDS | 35.0% |
| ! | TCACTATCCAACATGTTTTC+TGG | - | chr1.2:76207401-76207420 | None:intergenic | 35.0% |
| !! | GTTAGGGAAATTTGGTTTGA+TGG | + | chr1.2:76205624-76205643 | MS.gene34418:CDS | 35.0% |
| AATATGTCGGTCTCATGCTA+AGG | + | chr1.2:76206698-76206717 | MS.gene34418:intron | 40.0% | |
| ACACATTCAGTGACAGTGAA+TGG | + | chr1.2:76205022-76205041 | MS.gene34418:CDS | 40.0% | |
| ACATTCAGTGACAGTGAATG+GGG | + | chr1.2:76205024-76205043 | MS.gene34418:CDS | 40.0% | |
| ACGGGAAGATGATAAGGAAA+AGG | + | chr1.2:76207445-76207464 | MS.gene34418:CDS | 40.0% | |
| AGAATGCTAAGCTAGATGTG+AGG | + | chr1.2:76206302-76206321 | MS.gene34418:intron | 40.0% | |
| ATGTTTCAATTCGTCCAGGA+TGG | + | chr1.2:76207126-76207145 | MS.gene34418:CDS | 40.0% | |
| CACATTCAGTGACAGTGAAT+GGG | + | chr1.2:76205023-76205042 | MS.gene34418:CDS | 40.0% | |
| CTAGAATCATGTCTATCCCA+AGG | - | chr1.2:76205306-76205325 | None:intergenic | 40.0% | |
| CTCATGCTAAGGTCAAACTT+AGG | + | chr1.2:76206709-76206728 | MS.gene34418:intron | 40.0% | |
| GATTTATGCCAAAACCATCC+TGG | - | chr1.2:76207143-76207162 | None:intergenic | 40.0% | |
| GCCACTTACACTGAAATCTA+TGG | + | chr1.2:76205919-76205938 | MS.gene34418:intron | 40.0% | |
| GGACAACAATTGGTTACAAG+AGG | + | chr1.2:76207600-76207619 | MS.gene34418:CDS | 40.0% | |
| GTAAACCTTGAGTGCCAAAA+AGG | - | chr1.2:76207731-76207750 | None:intergenic | 40.0% | |
| GTGACCATTTGTGGTCATAT+TGG | + | chr1.2:76207417-76207436 | MS.gene34418:CDS | 40.0% | |
| GTTAAAGTTAGTAGCCTGAG+AGG | + | chr1.2:76207353-76207372 | MS.gene34418:CDS | 40.0% | |
| GTTTGGTCCAGAAAACATGT+TGG | + | chr1.2:76207391-76207410 | MS.gene34418:CDS | 40.0% | |
| TAAGTGCATGTTTGGATCGA+CGG | + | chr1.2:76205449-76205468 | MS.gene34418:intron | 40.0% | |
| TGAACACTGGTGATCCAAAA+GGG | + | chr1.2:76207078-76207097 | MS.gene34418:CDS | 40.0% | |
| TGATCTCCACTCAGATCAAA+AGG | + | chr1.2:76206017-76206036 | MS.gene34418:intron | 40.0% | |
| TGGGATCTATCTTTCACCTT+GGG | + | chr1.2:76205287-76205306 | MS.gene34418:CDS | 40.0% | |
| TGTGATGTTTCAATTCGTCC+AGG | + | chr1.2:76207122-76207141 | MS.gene34418:CDS | 40.0% | |
| TGTTGGATAGTGACCATTTG+TGG | + | chr1.2:76207408-76207427 | MS.gene34418:CDS | 40.0% | |
| TTGGGATCTATCTTTCACCT+TGG | + | chr1.2:76205286-76205305 | MS.gene34418:CDS | 40.0% | |
| TTGGTTACAAGAGGCTTCAT+AGG | + | chr1.2:76207609-76207628 | MS.gene34418:CDS | 40.0% | |
| TTTCCTTATCATCTTCCCGT+GGG | - | chr1.2:76207445-76207464 | None:intergenic | 40.0% | |
| TTTCTTCTCACACATATGGC+TGG | - | chr1.2:76206762-76206781 | None:intergenic | 40.0% | |
| ! | CTCTTTCCTTTTGATCTGAG+TGG | - | chr1.2:76206026-76206045 | None:intergenic | 40.0% |
| ! | GACTTGGTCAAAGAATCGAA+CGG | + | chr1.2:76207540-76207559 | MS.gene34418:CDS | 40.0% |
| ! | GCAAAAGCATGCCAAAAAAG+TGG | + | chr1.2:76205881-76205900 | MS.gene34418:intron | 40.0% |
| ! | TTTTCCTTATCATCTTCCCG+TGG | - | chr1.2:76207446-76207465 | None:intergenic | 40.0% |
| !! | TTGATCCTTTTTGGCACTCA+AGG | + | chr1.2:76207723-76207742 | MS.gene34418:CDS | 40.0% |
| !!! | ACCATGATGGATTTTGTCTC+TGG | + | chr1.2:76205157-76205176 | MS.gene34418:CDS | 40.0% |
| AAAGTTAGTAGCCTGAGAGG+AGG | + | chr1.2:76207356-76207375 | MS.gene34418:CDS | 45.0% | |
| AAGAGGCTTCATAGGCTTGA+TGG | + | chr1.2:76207617-76207636 | MS.gene34418:CDS | 45.0% | |
| ATGCTGGACCTGATGTTAGA+TGG | + | chr1.2:76205742-76205761 | MS.gene34418:CDS | 45.0% | |
| CAATGCAGGTATCTGAACAC+TGG | + | chr1.2:76207065-76207084 | MS.gene34418:intron | 45.0% | |
| CTGAACACTGGTGATCCAAA+AGG | + | chr1.2:76207077-76207096 | MS.gene34418:CDS | 45.0% | |
| GCCAGAGACAAAATCCATCA+TGG | - | chr1.2:76205161-76205180 | None:intergenic | 45.0% | |
| GGGTCCAATATGACCACAAA+TGG | - | chr1.2:76207424-76207443 | None:intergenic | 45.0% | |
| GTCAATGCAGCCACTCATAA+AGG | + | chr1.2:76205255-76205274 | MS.gene34418:CDS | 45.0% | |
| GTGATCCAAAAGGGACAGAT+TGG | + | chr1.2:76207087-76207106 | MS.gene34418:CDS | 45.0% | |
| TGATGGAGCAAAAGATCCCA+AGG | + | chr1.2:76205641-76205660 | MS.gene34418:CDS | 45.0% | |
| TGCTGGACCTGATGTTAGAT+GGG | + | chr1.2:76205743-76205762 | MS.gene34418:CDS | 45.0% | |
| TGGACTCAACACAACCCAAT+GGG | + | chr1.2:76205083-76205102 | MS.gene34418:CDS | 45.0% | |
| TGGGTTGTGTTGAGTCCAAT+TGG | - | chr1.2:76205081-76205100 | None:intergenic | 45.0% | |
| TTCCTTATCATCTTCCCGTG+GGG | - | chr1.2:76207444-76207463 | None:intergenic | 45.0% | |
| TTGGACTCAACACAACCCAA+TGG | + | chr1.2:76205082-76205101 | MS.gene34418:CDS | 45.0% | |
| ! | CAATTCGTCCAGGATGGTTT+TGG | + | chr1.2:76207132-76207151 | MS.gene34418:CDS | 45.0% |
| !! | AAGTATAATAAAAATATTAT+AGG | - | chr1.2:76207018-76207037 | None:intergenic | 5.0% |
| !!! | ATATTTTTATTATACTTTTT+AGG | + | chr1.2:76207021-76207040 | MS.gene34418:intron | 5.0% |
| ACACATGAGGAACACGCAGA+GGG | - | chr1.2:76206886-76206905 | None:intergenic | 50.0% | |
| ACCTGATGTTAGATGGGTGG+GGG | + | chr1.2:76205749-76205768 | MS.gene34418:CDS | 50.0% | |
| AGCCTGAGAGGAGGAAAAGA+GGG | + | chr1.2:76207365-76207384 | MS.gene34418:CDS | 50.0% | |
| GACCTGATGTTAGATGGGTG+GGG | + | chr1.2:76205748-76205767 | MS.gene34418:CDS | 50.0% | |
| GGACCTGATGTTAGATGGGT+GGG | + | chr1.2:76205747-76205766 | MS.gene34418:CDS | 50.0% | |
| TAGCCTGAGAGGAGGAAAAG+AGG | + | chr1.2:76207364-76207383 | MS.gene34418:CDS | 50.0% | |
| TGAGAGGAGGAAAAGAGGGA+GGG | + | chr1.2:76207369-76207388 | MS.gene34418:CDS | 50.0% | |
| TGGACCTGATGTTAGATGGG+TGG | + | chr1.2:76205746-76205765 | MS.gene34418:CDS | 50.0% | |
| TGTGGTCATATTGGACCCCA+CGG | + | chr1.2:76207426-76207445 | MS.gene34418:CDS | 50.0% | |
| ! | GGTAGCCAATCTGTCCCTTT+TGG | - | chr1.2:76207095-76207114 | None:intergenic | 50.0% |
| AGATGGGTGGGGGATGAAAC+AGG | + | chr1.2:76205759-76205778 | MS.gene34418:CDS | 55.0% | |
| AGCTGCCACATTGGCCCATT+GGG | - | chr1.2:76205100-76205119 | None:intergenic | 55.0% | |
| AGTGACAGTGAATGGGGCAC+AGG | + | chr1.2:76205030-76205049 | MS.gene34418:CDS | 55.0% | |
| CACAACCCAATGGGCCAATG+TGG | + | chr1.2:76205092-76205111 | MS.gene34418:CDS | 55.0% | |
| CACACATGAGGAACACGCAG+AGG | - | chr1.2:76206887-76206906 | None:intergenic | 55.0% | |
| CTGAGAGGAGGAAAAGAGGG+AGG | + | chr1.2:76207368-76207387 | MS.gene34418:CDS | 55.0% | |
| GACCCCACGGGAAGATGATA+AGG | + | chr1.2:76207439-76207458 | MS.gene34418:CDS | 55.0% | |
| GATGGGTGGGGGATGAAACA+GGG | + | chr1.2:76205760-76205779 | MS.gene34418:CDS | 55.0% | |
| GGAGGAAAAGAGGGAGGGTT+TGG | + | chr1.2:76207374-76207393 | MS.gene34418:CDS | 55.0% | |
| GGATGAAACAGGGACTGCAG+GGG | + | chr1.2:76205770-76205789 | MS.gene34418:CDS | 55.0% | |
| GGGATGAAACAGGGACTGCA+GGG | + | chr1.2:76205769-76205788 | MS.gene34418:CDS | 55.0% | |
| GTGGTCATATTGGACCCCAC+GGG | + | chr1.2:76207427-76207446 | MS.gene34418:CDS | 55.0% | |
| TCCCCCACCCATCTAACATC+AGG | - | chr1.2:76205753-76205772 | None:intergenic | 55.0% | |
| TCCTGCTTCAGCTGCCACAT+TGG | - | chr1.2:76205109-76205128 | None:intergenic | 55.0% | |
| ! | CTCCCTCTTTTCCTCCTCTC+AGG | - | chr1.2:76207370-76207389 | None:intergenic | 55.0% |
| CAGCTGCCACATTGGCCCAT+TGG | - | chr1.2:76205101-76205120 | None:intergenic | 60.0% | |
| GCCAATGTGGCAGCTGAAGC+AGG | + | chr1.2:76205105-76205124 | MS.gene34418:CDS | 60.0% | |
| GGGGATGAAACAGGGACTGC+AGG | + | chr1.2:76205768-76205787 | MS.gene34418:CDS | 60.0% | |
| GGACTGCAGGGGACACGTGT+TGG | + | chr1.2:76205781-76205800 | MS.gene34418:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 76205000 | 76207760 | 76205000 | ID=MS.gene34418 |
| chr1.2 | mRNA | 76205000 | 76207760 | 76205000 | ID=MS.gene34418.t1;Parent=MS.gene34418 |
| chr1.2 | exon | 76205000 | 76205388 | 76205000 | ID=MS.gene34418.t1.exon1;Parent=MS.gene34418.t1 |
| chr1.2 | CDS | 76205000 | 76205388 | 76205000 | ID=cds.MS.gene34418.t1;Parent=MS.gene34418.t1 |
| chr1.2 | exon | 76205614 | 76205853 | 76205614 | ID=MS.gene34418.t1.exon2;Parent=MS.gene34418.t1 |
| chr1.2 | CDS | 76205614 | 76205853 | 76205614 | ID=cds.MS.gene34418.t1;Parent=MS.gene34418.t1 |
| chr1.2 | exon | 76207073 | 76207760 | 76207073 | ID=MS.gene34418.t1.exon3;Parent=MS.gene34418.t1 |
| chr1.2 | CDS | 76207073 | 76207760 | 76207073 | ID=cds.MS.gene34418.t1;Parent=MS.gene34418.t1 |
| Gene Sequence |
| Protein sequence |
