AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34433

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34433.t1 MTR_1g101945 94.444 252 7 1 1 245 1 252 1.30e-171 473
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34433.t1 AT5G51840 54.365 252 95 5 1 244 1 240 1.05e-79 240

Find 53 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACCGTCGGGTCCGATCTC+AGG 0.275675 1.2:+76029483 None:intergenic
GGGAATTGGTGCTGTGTCTA+AGG 0.286846 1.2:-76026596 MS.gene34433:CDS
AAAGTCAACTTCCAATTAAA+AGG 0.301201 1.2:-76026622 MS.gene34433:CDS
TCATTAGGAGGTAGCTGATT+AGG 0.307360 1.2:+76026667 None:intergenic
ATGTGAAGATTTGAGCAATT+TGG 0.324746 1.2:-76027368 MS.gene34433:intron
GAAGGAAGAGGAAGCAATAA+AGG 0.333223 1.2:-76027398 MS.gene34433:CDS
GCTCCTGGCTGGACTGGTGC+TGG 0.351549 1.2:-76026562 MS.gene34433:CDS
CCGCTTGATTCCCTTGCGTT+GGG 0.381589 1.2:+76026751 None:intergenic
GCCGATAACGGCAGCTTCTC+TGG 0.386286 1.2:+76029458 None:intergenic
CAATTAAAAGGAAAGGGAAT+TGG 0.401380 1.2:-76026610 MS.gene34433:CDS
TCAGTCTCAGTTTGCACGGC+TGG 0.418620 1.2:-76027259 MS.gene34433:CDS
CCCGCTTGATTCCCTTGCGT+TGG 0.422240 1.2:+76026750 None:intergenic
CATTAAAGTAAATACCTTCC+GGG 0.423536 1.2:+76028204 None:intergenic
AGCTTCTCTGGCAAGACCGT+CGG 0.432327 1.2:+76029470 None:intergenic
TCTTCTGCTCCTGGCTGGAC+TGG 0.439886 1.2:-76026568 MS.gene34433:CDS
GTAGATCTTCTGCTCCTGGC+TGG 0.457997 1.2:-76026573 MS.gene34433:CDS
GCTTCTCTGGCAAGACCGTC+GGG 0.463640 1.2:+76029471 None:intergenic
GCATTAGTTGTTGTGTGACT+TGG 0.469535 1.2:+76027204 None:intergenic
AAGGGTAGATCTTCTGCTCC+TGG 0.476196 1.2:-76026577 MS.gene34433:CDS
TTTCTGACCATTACTTTGAT+CGG 0.488351 1.2:+76026708 None:intergenic
AACTTCCAATTAAAAGGAAA+GGG 0.503408 1.2:-76026616 MS.gene34433:CDS
GAGATCGGAAAGTTCTTCTC+AGG 0.511097 1.2:-76026803 MS.gene34433:CDS
CCTTCGCTTCGCCCTGAGAT+CGG 0.511453 1.2:-76029495 MS.gene34433:CDS
GACCGTCGGGTCCGATCTCA+GGG 0.514138 1.2:+76029484 None:intergenic
CCGATCTCAGGGCGAAGCGA+AGG 0.514737 1.2:+76029495 None:intergenic
CAACTTCCAATTAAAAGGAA+AGG 0.514991 1.2:-76026617 MS.gene34433:CDS
CCAACGCAAGGGAATCAAGC+GGG 0.516140 1.2:-76026750 MS.gene34433:CDS
AAGCCAGCACCAGTCCAGCC+AGG 0.521386 1.2:+76026559 None:intergenic
ATTATGTTAGGATGGGAGAT+CGG 0.534565 1.2:-76026818 MS.gene34433:intron
AGCTAAAAGAAGAACAAGCC+CGG 0.536660 1.2:-76028222 MS.gene34433:CDS
GTTCCTCTGTTCCCAACGCA+AGG 0.538012 1.2:-76026762 MS.gene34433:CDS
AGCAGCAGCAAAAGTAGTGA+AGG 0.544691 1.2:-76027416 MS.gene34433:CDS
TTTCCTTCGCTTTCATTAGG+AGG 0.549995 1.2:+76026655 None:intergenic
CAGGAGAGTAAAACACAAGA+TGG 0.554002 1.2:-76026784 MS.gene34433:CDS
CTTGAGATGAAACTTACAGC+TGG 0.561291 1.2:-76028417 MS.gene34433:CDS
CGCCCTGAGATCGGACCCGA+CGG 0.567718 1.2:-76029486 MS.gene34433:CDS
TTTCTTTCTCAAATGCTCAA+GGG 0.570599 1.2:+76028279 None:intergenic
CCCAACGCAAGGGAATCAAG+CGG 0.573634 1.2:-76026751 MS.gene34433:CDS
GGAATTGGTGCTGTGTCTAA+GGG 0.575441 1.2:-76026595 MS.gene34433:CDS
TTCCCTTGCGTTGGGAACAG+AGG 0.594506 1.2:+76026759 None:intergenic
CGATCTCAGGGCGAAGCGAA+GGG 0.598299 1.2:+76029496 None:intergenic
GCAGTCAGTCTCAGTTTGCA+CGG 0.601159 1.2:-76027263 MS.gene34433:CDS
CTATTCGAAGATTCGAAATG+TGG 0.605312 1.2:-76028463 MS.gene34433:CDS
AGCAAAAGTAGTGAAGGAAG+AGG 0.607596 1.2:-76027410 MS.gene34433:CDS
AAAAGAAGAACAAGCCCGGA+AGG 0.610621 1.2:-76028218 MS.gene34433:intron
TTTCTTGCAGATCATCGAAG+AGG 0.614509 1.2:-76029349 MS.gene34433:intron
TTGAGATGAAACTTACAGCT+GGG 0.616543 1.2:-76028416 MS.gene34433:CDS
TTCCTCTGTTCCCAACGCAA+GGG 0.617747 1.2:-76026761 MS.gene34433:CDS
CAACGCAAGGGAATCAAGCG+GGG 0.621866 1.2:-76026749 MS.gene34433:CDS
ACTTTGATCGGTAACACTCG+TGG 0.625013 1.2:+76026720 None:intergenic
AGTGTTACCGATCAAAGTAA+TGG 0.626907 1.2:-76026715 MS.gene34433:CDS
CTACCTCCTAATGAAAGCGA+AGG 0.630299 1.2:-76026658 MS.gene34433:CDS
AACGCAAGGGAATCAAGCGG+GGG 0.633921 1.2:-76026748 MS.gene34433:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAATTAAAATTAAAGAT+TGG + chr1.2:76027535-76027554 None:intergenic 10.0%
!! AAAAAGCAAATGAAAAATAA+AGG + chr1.2:76028432-76028451 None:intergenic 15.0%
!! TATAATTTATGTATAGATCA+TGG - chr1.2:76027216-76027235 MS.gene34433:CDS 15.0%
!! AAAATTCACCTTAAAGATTA+AGG + chr1.2:76027376-76027395 None:intergenic 20.0%
!! AGTATAATCAACTTATACAA+TGG + chr1.2:76029094-76029113 None:intergenic 20.0%
!! CAAATGAAAAATAAAGGAAT+AGG + chr1.2:76028426-76028445 None:intergenic 20.0%
!! TATCTCGAACATTATTTAAA+TGG - chr1.2:76028519-76028538 MS.gene34433:intron 20.0%
!! TCATATTTACTGAATAAAGT+TGG - chr1.2:76028171-76028190 MS.gene34433:intron 20.0%
!! TGATACTATCAATCTTATAT+AGG - chr1.2:76028764-76028783 MS.gene34433:intron 20.0%
!! TTGAACATTAGTATAAAATG+AGG + chr1.2:76026805-76026824 None:intergenic 20.0%
!! TTGATACACAAAAATATCAA+CGG - chr1.2:76028557-76028576 MS.gene34433:intron 20.0%
!!! ATAATATACTACTTTTAAGC+TGG - chr1.2:76028736-76028755 MS.gene34433:intron 20.0%
!!! ATTATTTAAATGGATTAGTC+TGG - chr1.2:76028529-76028548 MS.gene34433:intron 20.0%
!!! ATTTTATCTCATTGAATGAT+TGG - chr1.2:76027462-76027481 MS.gene34433:intron 20.0%
!!! GTATGCATTTTTATTTTGAT+TGG - chr1.2:76028127-76028146 MS.gene34433:intron 20.0%
!!! TTAAACAAATTTTGCCTATA+GGG + chr1.2:76027431-76027450 None:intergenic 20.0%
! AAAGTCAACTTCCAATTAAA+AGG - chr1.2:76029437-76029456 MS.gene34433:intron 25.0%
! AACTTCCAATTAAAAGGAAA+GGG - chr1.2:76029443-76029462 MS.gene34433:intron 25.0%
! ACATTAAAGTAAATACCTTC+CGG + chr1.2:76027859-76027878 None:intergenic 25.0%
! AGAGAATCATAGAAATAGAA+TGG + chr1.2:76026896-76026915 None:intergenic 25.0%
! AGTATTGTTAATATAGAACG+AGG - chr1.2:76027291-76027310 MS.gene34433:intron 25.0%
! ATAGATTCTATCCATAAACA+TGG + chr1.2:76027114-76027133 None:intergenic 25.0%
! ATGAATCAACTAAGTAATGA+TGG + chr1.2:76026675-76026694 None:intergenic 25.0%
! ATTCCATCATAAGTTCAAAA+AGG - chr1.2:76027702-76027721 MS.gene34433:intron 25.0%
! ATTGAGTCCAGTTAATTAAT+TGG + chr1.2:76027351-76027370 None:intergenic 25.0%
! CAGTCTTAATAACTAAATGA+AGG - chr1.2:76028270-76028289 MS.gene34433:CDS 25.0%
! CTGAAAATGTTAGAATACTA+AGG - chr1.2:76027043-76027062 MS.gene34433:intron 25.0%
! CTGCAATAGATAAGATAATT+TGG - chr1.2:76028001-76028020 MS.gene34433:intron 25.0%
! TATACAATGGAATACTTAAG+AGG + chr1.2:76029081-76029100 None:intergenic 25.0%
! TCAATAAATAAATGCGAGAA+GGG + chr1.2:76028324-76028343 None:intergenic 25.0%
! TCATGTGCTTAAATTATGTT+AGG - chr1.2:76029229-76029248 MS.gene34433:intron 25.0%
! TCGCATTTATTTATTGAACT+AGG - chr1.2:76028327-76028346 MS.gene34433:intron 25.0%
! TCTAATTGACCTAAAATGAT+TGG + chr1.2:76026931-76026950 None:intergenic 25.0%
! TGATACACAAAAATATCAAC+GGG - chr1.2:76028558-76028577 MS.gene34433:intron 25.0%
! TGCTTAAATTATGTTAGGAT+GGG - chr1.2:76029234-76029253 MS.gene34433:intron 25.0%
! TTCAATAAATAAATGCGAGA+AGG + chr1.2:76028325-76028344 None:intergenic 25.0%
! TTCATTATGTGAACATGTTA+GGG - chr1.2:76027901-76027920 MS.gene34433:intron 25.0%
! TTTACAGCCAATTAATTAAC+TGG - chr1.2:76027341-76027360 MS.gene34433:intron 25.0%
! TTTCATTATGTGAACATGTT+AGG - chr1.2:76027900-76027919 MS.gene34433:intron 25.0%
!! CAATAACAACCAATCATTTT+AGG - chr1.2:76026919-76026938 MS.gene34433:intron 25.0%
!! GTTAAACAAATTTTGCCTAT+AGG + chr1.2:76027432-76027451 None:intergenic 25.0%
!! TTGAAAGAATGTGATAATGT+TGG + chr1.2:76026778-76026797 None:intergenic 25.0%
!!! CTTTGCTTTTCTTTTATACA+TGG - chr1.2:76027742-76027761 MS.gene34433:intron 25.0%
AATAAATAAATGCGAGAAGG+GGG + chr1.2:76028322-76028341 None:intergenic 30.0%
ACACTAGTAATCCATGTTTA+TGG - chr1.2:76027100-76027119 MS.gene34433:intron 30.0%
ACACTGTAATCTATATTCCA+TGG + chr1.2:76027138-76027157 None:intergenic 30.0%
ATGTGAAGATTTGAGCAATT+TGG - chr1.2:76028691-76028710 MS.gene34433:intron 30.0%
ATTGGCTGTAAAAAAGTTCT+CGG + chr1.2:76027333-76027352 None:intergenic 30.0%
CAACTTCCAATTAAAAGGAA+AGG - chr1.2:76029442-76029461 MS.gene34433:intron 30.0%
CAATAAATAAATGCGAGAAG+GGG + chr1.2:76028323-76028342 None:intergenic 30.0%
CAATTAAAAGGAAAGGGAAT+TGG - chr1.2:76029449-76029468 MS.gene34433:intron 30.0%
CATTAAAGTAAATACCTTCC+GGG + chr1.2:76027858-76027877 None:intergenic 30.0%
CTCAATCACCTTAATCTTTA+AGG - chr1.2:76027365-76027384 MS.gene34433:intron 30.0%
GAAACATGTATAGGTATAAC+TGG + chr1.2:76029169-76029188 None:intergenic 30.0%
GCATAGTATGAAACATGTAT+AGG + chr1.2:76029178-76029197 None:intergenic 30.0%
GTGCTTAAATTATGTTAGGA+TGG - chr1.2:76029233-76029252 MS.gene34433:intron 30.0%
GTTCACATAATGAAAATAGC+AGG + chr1.2:76027895-76027914 None:intergenic 30.0%
TAGGTCAATTAGATTCATGA+AGG - chr1.2:76026938-76026957 MS.gene34433:intron 30.0%
TATGGATAGAATCTATACCA+TGG - chr1.2:76027118-76027137 MS.gene34433:intron 30.0%
TATTACATCTGCATAGTTAC+TGG - chr1.2:76028912-76028931 MS.gene34433:intron 30.0%
TCATTATGTGAACATGTTAG+GGG - chr1.2:76027902-76027921 MS.gene34433:intron 30.0%
TCATTGAATGATTGGATGAT+GGG - chr1.2:76027470-76027489 MS.gene34433:intron 30.0%
TCTTATCTATTGCAGCAATT+TGG + chr1.2:76027996-76028015 None:intergenic 30.0%
TGAAAATAGCAGGAGAAAAA+TGG + chr1.2:76027885-76027904 None:intergenic 30.0%
TGCAATATGCTATGAAATGA+AGG - chr1.2:76026985-76027004 MS.gene34433:intron 30.0%
TTAAAGATTGGTGAACACAA+TGG + chr1.2:76027523-76027542 None:intergenic 30.0%
TTTCTGACCATTACTTTGAT+CGG + chr1.2:76029354-76029373 None:intergenic 30.0%
TTTCTTTCTCAAATGCTCAA+GGG + chr1.2:76027783-76027802 None:intergenic 30.0%
! AAATGAAGGAAGTAGTCTTA+AGG - chr1.2:76026999-76027018 MS.gene34433:intron 30.0%
! ACAATCTTGTCAAATTTGCT+TGG - chr1.2:76029119-76029138 MS.gene34433:intron 30.0%
! CAACCTTTTTGAACTTATGA+TGG + chr1.2:76027708-76027727 None:intergenic 30.0%
! CAATCTTGTCAAATTTGCTT+GGG - chr1.2:76029120-76029139 MS.gene34433:intron 30.0%
! CAATTCCCTTTCCTTTTAAT+TGG + chr1.2:76029451-76029470 None:intergenic 30.0%
! TTTTCTTTCTCAAATGCTCA+AGG + chr1.2:76027784-76027803 None:intergenic 30.0%
! TTTTTAGATACCTTGGAGTT+TGG - chr1.2:76027392-76027411 MS.gene34433:CDS 30.0%
!! AGGTGAATTTTTAGATACCT+TGG - chr1.2:76027385-76027404 MS.gene34433:CDS 30.0%
!!! ACTCACAAACCTGATTTTTT+GGG + chr1.2:76027669-76027688 None:intergenic 30.0%
!!! TACTCACAAACCTGATTTTT+TGG + chr1.2:76027670-76027689 None:intergenic 30.0%
AGTGTTACCGATCAAAGTAA+TGG - chr1.2:76029344-76029363 MS.gene34433:intron 35.0%
ATATATCCGACCAAACTACA+TGG - chr1.2:76027494-76027513 MS.gene34433:intron 35.0%
ATCTTGAATGTTTGTGCTTC+AGG - chr1.2:76028613-76028632 MS.gene34433:intron 35.0%
ATTATGTTAGGATGGGAGAT+CGG - chr1.2:76029241-76029260 MS.gene34433:intron 35.0%
CTATTCGAAGATTCGAAATG+TGG - chr1.2:76027596-76027615 MS.gene34433:intron 35.0%
CTCATTGAATGATTGGATGA+TGG - chr1.2:76027469-76027488 MS.gene34433:intron 35.0%
CTTGTATTCACCTTCTCAAT+GGG + chr1.2:76028468-76028487 None:intergenic 35.0%
GAATCAATTTCATTGTGCTG+TGG - chr1.2:76027072-76027091 MS.gene34433:intron 35.0%
GGCAGAATTAAAAAGACGAT+TGG - chr1.2:76028821-76028840 MS.gene34433:intron 35.0%
GTGAATACAAGATATCCATG+TGG - chr1.2:76028477-76028496 MS.gene34433:CDS 35.0%
TATATCCGACCAAACTACAT+GGG - chr1.2:76027495-76027514 MS.gene34433:intron 35.0%
TCTTGTATTCACCTTCTCAA+TGG + chr1.2:76028469-76028488 None:intergenic 35.0%
TGAACGCGAAAAGAAATCAA+TGG + chr1.2:76028089-76028108 None:intergenic 35.0%
TTAGTTATACTGCATCCACA+TGG + chr1.2:76028495-76028514 None:intergenic 35.0%
TTGAGATGAAACTTACAGCT+GGG - chr1.2:76027643-76027662 MS.gene34433:intron 35.0%
TTTAAGCTAATCAGCTGAAG+AGG - chr1.2:76027260-76027279 MS.gene34433:CDS 35.0%
! AAATTTTGCCTATAGGGTAC+CGG + chr1.2:76027425-76027444 None:intergenic 35.0%
! ACTAAGTAATGATGGAATCG+AGG + chr1.2:76026667-76026686 None:intergenic 35.0%
! CTTTTTCCTTCGCTTTCATT+AGG + chr1.2:76029410-76029429 None:intergenic 35.0%
AATGTCATCAGTTTCCTAGC+TGG + chr1.2:76029058-76029077 None:intergenic 40.0%
AATGTTTGTGCTTCAGGTGT+GGG - chr1.2:76028619-76028638 MS.gene34433:intron 40.0%
ACAATGGTACCCATGTAGTT+TGG + chr1.2:76027507-76027526 None:intergenic 40.0%
AGATACCTTGGAGTTTGGTT+GGG - chr1.2:76027397-76027416 MS.gene34433:CDS 40.0%
AGCAAAAGTAGTGAAGGAAG+AGG - chr1.2:76028649-76028668 MS.gene34433:intron 40.0%
AGCTAAAAGAAGAACAAGCC+CGG - chr1.2:76027837-76027856 MS.gene34433:intron 40.0%
ATGCCTTATAGATGAAGCTC+AGG + chr1.2:76029035-76029054 None:intergenic 40.0%
CAGGAGAGTAAAACACAAGA+TGG - chr1.2:76029275-76029294 MS.gene34433:intron 40.0%
CTAAGCTGTGCACCTAATTT+GGG - chr1.2:76028941-76028960 MS.gene34433:intron 40.0%
CTACCTGAGCTTCATCTATA+AGG - chr1.2:76029029-76029048 MS.gene34433:intron 40.0%
CTCAAAGTCACACAGTAAGA+AGG + chr1.2:76027965-76027984 None:intergenic 40.0%
CTTGAGATGAAACTTACAGC+TGG - chr1.2:76027642-76027661 MS.gene34433:intron 40.0%
GAAGGAAGAGGAAGCAATAA+AGG - chr1.2:76028661-76028680 MS.gene34433:intron 40.0%
GCATTAGTTGTTGTGTGACT+TGG + chr1.2:76028858-76028877 None:intergenic 40.0%
GTCTTATGTTCCCATTGAGA+AGG - chr1.2:76028455-76028474 MS.gene34433:CDS 40.0%
TAAAGTTGGACAGTGCATCA+AGG - chr1.2:76028185-76028204 MS.gene34433:intron 40.0%
TAAGCTGTGCACCTAATTTG+GGG - chr1.2:76028942-76028961 MS.gene34433:intron 40.0%
TACATCTGCATAGTTACTGG+TGG - chr1.2:76028915-76028934 MS.gene34433:intron 40.0%
TAGATACCTTGGAGTTTGGT+TGG - chr1.2:76027396-76027415 MS.gene34433:CDS 40.0%
TCAATTTCATTGTGCTGTGG+TGG - chr1.2:76027075-76027094 MS.gene34433:intron 40.0%
TCATTAGGAGGTAGCTGATT+AGG + chr1.2:76029395-76029414 None:intergenic 40.0%
TCTAAGCTGTGCACCTAATT+TGG - chr1.2:76028940-76028959 MS.gene34433:intron 40.0%
TTTCCTTCGCTTTCATTAGG+AGG + chr1.2:76029407-76029426 None:intergenic 40.0%
TTTCTTGCAGATCATCGAAG+AGG - chr1.2:76026710-76026729 MS.gene34433:CDS 40.0%
!! GGCTTGTTCTTCTTTTAGCT+TGG + chr1.2:76027837-76027856 None:intergenic 40.0%
AAAAGAAGAACAAGCCCGGA+AGG - chr1.2:76027841-76027860 MS.gene34433:intron 45.0%
ACTTTGATCGGTAACACTCG+TGG + chr1.2:76029342-76029361 None:intergenic 45.0%
AGCAGCAGCAAAAGTAGTGA+AGG - chr1.2:76028643-76028662 MS.gene34433:intron 45.0%
CACACAGTAAGAAGGTAGTG+CGG + chr1.2:76027957-76027976 None:intergenic 45.0%
CTACCTCCTAATGAAAGCGA+AGG - chr1.2:76029401-76029420 MS.gene34433:intron 45.0%
GAATGTTTGTGCTTCAGGTG+TGG - chr1.2:76028618-76028637 MS.gene34433:intron 45.0%
GAGATCGGAAAGTTCTTCTC+AGG - chr1.2:76029256-76029275 MS.gene34433:intron 45.0%
GCAAGCATACACCCCAAATT+AGG + chr1.2:76028956-76028975 None:intergenic 45.0%
TGGTACCCATGTAGTTTGGT+CGG + chr1.2:76027503-76027522 None:intergenic 45.0%
! CATCTATAAGGCATCCAGCT+AGG - chr1.2:76029041-76029060 MS.gene34433:intron 45.0%
! GGCTACACGAATTTTCTCTG+TGG + chr1.2:76027816-76027835 None:intergenic 45.0%
! TGTGAACATGTTAGGGGTGT+TGG - chr1.2:76027908-76027927 MS.gene34433:intron 45.0%
!! GGAATTGGTGCTGTGTCTAA+GGG - chr1.2:76029464-76029483 MS.gene34433:intron 45.0%
!!! ATTATTTTTTATAAAGTATT+TGG + chr1.2:76028589-76028608 None:intergenic 5.0%
AAGGGTAGATCTTCTGCTCC+TGG - chr1.2:76029482-76029501 MS.gene34433:CDS 50.0%
AAGTTTCCAGTGCCCAGCAA+GGG + chr1.2:76028981-76029000 None:intergenic 50.0%
ACAGCTGGGCCCAAAAAATC+AGG - chr1.2:76027657-76027676 MS.gene34433:intron 50.0%
CCTCTCAGTGTAGCCGATAA+CGG + chr1.2:76026616-76026635 None:intergenic 50.0%
CTTGGAGTTTGGTTGGGTAC+CGG - chr1.2:76027403-76027422 MS.gene34433:CDS 50.0%
GCAGTCAGTCTCAGTTTGCA+CGG - chr1.2:76028796-76028815 MS.gene34433:intron 50.0%
TTCCTCTGTTCCCAACGCAA+GGG - chr1.2:76029298-76029317 MS.gene34433:intron 50.0%
! CGTTATCGGCTACACTGAGA+GGG - chr1.2:76026614-76026633 MS.gene34433:CDS 50.0%
!! GGGAATTGGTGCTGTGTCTA+AGG - chr1.2:76029463-76029482 MS.gene34433:intron 50.0%
AACGCAAGGGAATCAAGCGG+GGG - chr1.2:76029311-76029330 MS.gene34433:intron 55.0%
AGCTTCTCTGGCAAGACCGT+CGG + chr1.2:76026592-76026611 None:intergenic 55.0%
CAACGCAAGGGAATCAAGCG+GGG - chr1.2:76029310-76029329 MS.gene34433:intron 55.0%
CAAGTTTCCAGTGCCCAGCA+AGG + chr1.2:76028982-76029001 None:intergenic 55.0%
CAGTAAGAAGGTAGTGCGGC+TGG + chr1.2:76027953-76027972 None:intergenic 55.0%
CCAACGCAAGGGAATCAAGC+GGG - chr1.2:76029309-76029328 MS.gene34433:intron 55.0%
CCCAACGCAAGGGAATCAAG+CGG - chr1.2:76029308-76029327 MS.gene34433:intron 55.0%
CCGCTTGATTCCCTTGCGTT+GGG + chr1.2:76029311-76029330 None:intergenic 55.0%
CGGTACCCAACCAAACTCCA+AGG + chr1.2:76027405-76027424 None:intergenic 55.0%
GCCAGAGAAGCTGCCGTTAT+CGG - chr1.2:76026600-76026619 MS.gene34433:CDS 55.0%
GTAGATCTTCTGCTCCTGGC+TGG - chr1.2:76029486-76029505 MS.gene34433:CDS 55.0%
GTATGCTTGCCACCCTTGCT+GGG - chr1.2:76028966-76028985 MS.gene34433:intron 55.0%
GTTCCTCTGTTCCCAACGCA+AGG - chr1.2:76029297-76029316 MS.gene34433:intron 55.0%
TCAGTCTCAGTTTGCACGGC+TGG - chr1.2:76028800-76028819 MS.gene34433:intron 55.0%
TGTATGCTTGCCACCCTTGC+TGG - chr1.2:76028965-76028984 MS.gene34433:intron 55.0%
TTCCCTTGCGTTGGGAACAG+AGG + chr1.2:76029303-76029322 None:intergenic 55.0%
! CCGTTATCGGCTACACTGAG+AGG - chr1.2:76026613-76026632 MS.gene34433:CDS 55.0%
!! GGGCACTGGAAACTTGTCAG+AGG - chr1.2:76028986-76029005 MS.gene34433:intron 55.0%
!! GTTGGGTACCGGTACCCTAT+AGG - chr1.2:76027414-76027433 MS.gene34433:CDS 55.0%
CCCGCTTGATTCCCTTGCGT+TGG + chr1.2:76029312-76029331 None:intergenic 60.0%
CCTTCGCTTCGCCCTGAGAT+CGG - chr1.2:76026564-76026583 MS.gene34433:CDS 60.0%
CGATCTCAGGGCGAAGCGAA+GGG + chr1.2:76026566-76026585 None:intergenic 60.0%
GCTTCTCTGGCAAGACCGTC+GGG + chr1.2:76026591-76026610 None:intergenic 60.0%
TCTTCTGCTCCTGGCTGGAC+TGG - chr1.2:76029491-76029510 MS.gene34433:CDS 60.0%
TTTCCAGTGCCCAGCAAGGG+TGG + chr1.2:76028978-76028997 None:intergenic 60.0%
! GCCGATAACGGCAGCTTCTC+TGG + chr1.2:76026604-76026623 None:intergenic 60.0%
AAGCCAGCACCAGTCCAGCC+AGG + chr1.2:76029503-76029522 None:intergenic 65.0%
AGACCGTCGGGTCCGATCTC+AGG + chr1.2:76026579-76026598 None:intergenic 65.0%
CCGATCTCAGGGCGAAGCGA+AGG + chr1.2:76026567-76026586 None:intergenic 65.0%
GACCGTCGGGTCCGATCTCA+GGG + chr1.2:76026578-76026597 None:intergenic 65.0%
TTGCCACCCTTGCTGGGCAC+TGG - chr1.2:76028972-76028991 MS.gene34433:intron 65.0%
CGCCCTGAGATCGGACCCGA+CGG - chr1.2:76026573-76026592 MS.gene34433:CDS 70.0%
!! GCTCCTGGCTGGACTGGTGC+TGG - chr1.2:76029497-76029516 MS.gene34433:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 76026549 76029532 76026549 ID=MS.gene34433
chr1.2 mRNA 76026549 76029532 76026549 ID=MS.gene34433.t1;Parent=MS.gene34433
chr1.2 exon 76029467 76029532 76029467 ID=MS.gene34433.t1.exon1;Parent=MS.gene34433.t1
chr1.2 CDS 76029467 76029532 76029467 ID=cds.MS.gene34433.t1;Parent=MS.gene34433.t1
chr1.2 exon 76029330 76029361 76029330 ID=MS.gene34433.t1.exon2;Parent=MS.gene34433.t1
chr1.2 CDS 76029330 76029361 76029330 ID=cds.MS.gene34433.t1;Parent=MS.gene34433.t1
chr1.2 exon 76028403 76028500 76028403 ID=MS.gene34433.t1.exon3;Parent=MS.gene34433.t1
chr1.2 CDS 76028403 76028500 76028403 ID=cds.MS.gene34433.t1;Parent=MS.gene34433.t1
chr1.2 exon 76028219 76028301 76028219 ID=MS.gene34433.t1.exon4;Parent=MS.gene34433.t1
chr1.2 CDS 76028219 76028301 76028219 ID=cds.MS.gene34433.t1;Parent=MS.gene34433.t1
chr1.2 exon 76027369 76027446 76027369 ID=MS.gene34433.t1.exon5;Parent=MS.gene34433.t1
chr1.2 CDS 76027369 76027446 76027369 ID=cds.MS.gene34433.t1;Parent=MS.gene34433.t1
chr1.2 exon 76027197 76027295 76027197 ID=MS.gene34433.t1.exon6;Parent=MS.gene34433.t1
chr1.2 CDS 76027197 76027295 76027197 ID=cds.MS.gene34433.t1;Parent=MS.gene34433.t1
chr1.2 exon 76026549 76026830 76026549 ID=MS.gene34433.t1.exon7;Parent=MS.gene34433.t1
chr1.2 CDS 76026549 76026830 76026549 ID=cds.MS.gene34433.t1;Parent=MS.gene34433.t1
Gene Sequence

>MS.gene34433

ATGGCGTCAAGTAACCCTTCGCTTCGCCCTGAGATCGGACCCGACGGTCTTGCCAGAGAAGCTGCCGTTATCGGCTACACTGAGAGGGTTCTCTTTCTCTCTCTCTCTTTTTCTTCCTCGATTCCATCATTACTTAGTTGATTCATTCTTTTTCTTCTTGTTTTCTTGCAGATCATCGAAGAGGAACAACTTCAATTGCATAAGTAACTTCTCTCTCTCTATTTCTCCAACATTATCACATTCTTTCAATTTTCCTCATTTTATACTAATGTTCAAATCAAATTTCATCACATACGAATTTTTTGTATGTAATTTCTTGTTCATATCAAGAATTCTTCTTTTTGCCATTCTATTTCTATGATTCTCTTTGCAATAACAACCAATCATTTTAGGTCAATTAGATTCATGAAGGATGAAAAAGAAATTGCATTCTTTATGCAATATGCTATGAAATGAAGGAAGTAGTCTTAAGGCTATGAGTTTTTGCATTTGTACTGAAAATGTTAGAATACTAAGGTGAATTGAATCAATTTCATTGTGCTGTGGTGGTAACACTAGTAATCCATGTTTATGGATAGAATCTATACCATGGAATATAGATTACAGTGTGTGTGTGTGTGTGTCTGTGTGTTAATCTTGATTTCATTGTGCTGAAGTTTTAATTTAGTATAATTTATGTATAGATCATGGAATGAGAACTGTGACTTGTGTTTTAAGCTAATCAGCTGAAGAGGAATTTTGTAGTATTGTTAATATAGAACGAGGTGTCTATTTATTGCTTCCGAGAACTTTTTTACAGCCAATTAATTAACTGGACTCAATCACCTTAATCTTTAAGGTGAATTTTTAGATACCTTGGAGTTTGGTTGGGTACCGGTACCCTATAGGCAAAATTTGTTTAACATTTGAATTTATTTTATCTCATTGAATGATTGGATGATGGGTATATATCCGACCAAACTACATGGGTACCATTGTGTTCACCAATCTTTAATTTTAATTATTGTTTTTATTATCATTTATTATTTACAGATACATTCAAGAAAACTATTCGAAGATTCGAAATGTGGAGCGTGAGCTTCAAAATCTCACACTTGAGATGAAACTTACAGCTGGGCCCAAAAAATCAGGTTTGTGAGTATTATTGTTGCTCATTCCATCATAAGTTCAAAAAGGTTGTTATAGCTAAATGACTTTGCTTTTCTTTTATACATGGTGTGCATTCATTAAGCCCTTGAGCATTTGAGAAAGAAAATAGAACATTCCACAGAGAAAATTCGTGTAGCCAAGCTAAAAGAAGAACAAGCCCGGAAGGTATTTACTTTAATGTTCTCCATTTTTCTCCTGCTATTTTCATTATGTGAACATGTTAGGGGTGTTGGTGCTATATACTGCATTATGCCAGCCGCACTACCTTCTTACTGTGTGACTTTGAGCTGCTCAACCAAATTGCTGCAATAGATAAGATAATTTGGAAAATATATGTTGATAAACTCATGCGATGATTGTTCAGTATTGCTCAAATGAATTGCTCAAACCATTGATTTCTTTTCGCGTTCATGTAAATAGATGTTAATAGTATGCATTTTTATTTTGATTGGCACATTGTACACATTTATCATTCATATTTACTGAATAAAGTTGGACAGTGCATCAAGGTACATTCTTGCTCAATGATGATCACATTAATTGCTGATAACATTTTTAAGCACATCAGTGATCAGTCTTAATAACTAAATGAAGGTTTTCTGTAATTTACATAAATAGCTTCCCCCTTCTCGCATTTATTTATTGAACTAGGATTACTTTATTCAATAAAATATGATCTCTTGAATCATCATTTGTGTGAATAACAAATGAAATGATTTGCTATTCCTATTCCTTTATTTTTCATTTGCTTTTTTCAGTCTTATGTTCCCATTGAGAAGGTGAATACAAGATATCCATGTGGATGCAGTATAACTAAATACTATCTCGAACATTATTTAAATGGATTAGTCTGGAAGATTTGATACACAAAAATATCAACGGGTATTGCCAAATACTTTATAAAAAATAATTGATATCTTGAATGTTTGTGCTTCAGGTGTGGGAAGCAGCAGCAAAAGTAGTGAAGGAAGAGGAAGCAATAAAGGAGAAGCTATGTGAAGATTTGAGCAATTTGGTAATTGATTGTTGATTAAAGACATAATATACTACTTTTAAGCTGGTTGTTTGATACTATCAATCTTATATAGGTTCAAGAGAGCAGTCAGTCTCAGTTTGCACGGCTGGCAGAATTAAAAAGACGATTGGAAGCTTTGAATCCAAGTCACACAACAACTAATGCTAATCATGTATGTTTTTCTTGCTGTATTGAGCATTATTACATCTGCATAGTTACTGGTGGCTTCTAAGCTGTGCACCTAATTTGGGGTGTATGCTTGCCACCCTTGCTGGGCACTGGAAACTTGTCAGAGGAATGTTGTTGTAACTAGTAACTACCTGAGCTTCATCTATAAGGCATCCAGCTAGGAAACTGATGACATTCCTCTTAAGTATTCCATTGTATAAGTTGATTATACTTTTAGACAATCTTGTCAAATTTGCTTGGGTCTGTTAGATATACGTCGCTCGTCCAGTTATACCTATACATGTTTCATACTATGCATATTTTGTATTAGATCAGTAAATGTTAAAATCATGTGCTTAAATTATGTTAGGATGGGAGATCGGAAAGTTCTTCTCAGGAGAGTAAAACACAAGATGGTTCCTCTGTTCCCAACGCAAGGGAATCAAGCGGGGGATCAGCCACGAGTGTTACCGATCAAAGTAATGGTCAGAAAGTTGCAGTGACAGATAGACCTAATCAGCTACCTCCTAATGAAAGCGAAGGAAAAAGTAAAAAGAAAGTCAACTTCCAATTAAAAGGAAAGGGAATTGGTGCTGTGTCTAAGGGTAGATCTTCTGCTCCTGGCTGGACTGGTGCTGGCTTTGACGCTTGA
Protein sequence

>MS.gene34433.t1

MASSNPSLRPEIGPDGLAREAAIIEEEQLQLHKYIQENYSKIRNVERELQNLTLEMKLTAGPKKSALEHLRKKIEHSTEKIRVAKLKEEQARKVWEAAAKVVKEEEAIKEKLCEDLSNLVQESSQSQFARLAELKRRLEALNPSHTTTNANHDGRSESSSQESKTQDGSSVPNARESSGGSATSVTDQSNGQKVAVTDRPNQLPPNESEGKSKKKVNFQLKGKGIGAVSKGRSSAPGWTGAGFDA