Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052962.t1 | XP_004496626.1 | 88.9 | 189 | 21 | 0 | 1 | 189 | 62 | 250 | 6.00E-59 | 237.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052962.t1 | A0A1S2Y0N4 | 88.9 | 189 | 21 | 0 | 1 | 189 | 62 | 250 | 4.3e-59 | 237.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052962 | MS.gene059545 | 0.802362 | 5.82E-49 | -1.69E-46 |
| MS.gene052962 | MS.gene05996 | -0.803454 | 3.46E-49 | -1.69E-46 |
| MS.gene052962 | MS.gene06042 | 0.803237 | 3.84E-49 | -1.69E-46 |
| MS.gene052962 | MS.gene060574 | 0.801847 | 7.42E-49 | -1.69E-46 |
| MS.gene052962 | MS.gene26532 | 0.810216 | 1.29E-50 | -1.69E-46 |
| MS.gene052962 | MS.gene33980 | 0.811037 | 8.55E-51 | -1.69E-46 |
| MS.gene052962 | MS.gene34433 | 0.968956 | 2.03E-129 | -1.69E-46 |
| MS.gene052962 | MS.gene34934 | 0.808362 | 3.21E-50 | -1.69E-46 |
| MS.gene052962 | MS.gene40209 | 0.818822 | 1.60E-52 | -1.69E-46 |
| MS.gene052962 | MS.gene42376 | 0.823162 | 1.61E-53 | -1.69E-46 |
| MS.gene052962 | MS.gene55771 | 0.80709 | 5.99E-50 | -1.69E-46 |
| MS.gene052962 | MS.gene65986 | 0.825419 | 4.74E-54 | -1.69E-46 |
| MS.gene052962 | MS.gene71182 | 0.823389 | 1.42E-53 | -1.69E-46 |
| MS.gene052962 | MS.gene81068 | 0.808243 | 3.41E-50 | -1.69E-46 |
| MS.gene052962 | MS.gene91078 | 0.820273 | 7.48E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052962.t1 | MTR_1g101945 | 96.842 | 190 | 6 | 0 | 1 | 190 | 63 | 252 | 3.13e-131 | 368 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052962.t1 | AT5G51840 | 51.832 | 191 | 79 | 4 | 1 | 190 | 63 | 241 | 7.71e-52 | 167 |
Find 42 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATTGGTGCTGTGTCTA+AGG | 0.286846 | 1.3:-70062810 | MS.gene052962:CDS |
| AAAGTCAACTTCCAATTAAA+AGG | 0.301201 | 1.3:-70062836 | MS.gene052962:CDS |
| TCATTAGGAGGTAGCTGATT+AGG | 0.307360 | 1.3:+70062881 | None:intergenic |
| ATGTGAAGATTTGAGCAATT+TGG | 0.324746 | 1.3:-70063582 | MS.gene052962:intron |
| GAAGGAAGAGGAAGCAATAA+AGG | 0.333223 | 1.3:-70063612 | MS.gene052962:CDS |
| GCTCCTGGCTGGACTGGTGC+TGG | 0.351549 | 1.3:-70062776 | MS.gene052962:CDS |
| CCGCTTGATTCCCTTGCGTT+GGG | 0.381589 | 1.3:+70062965 | None:intergenic |
| CAATTAAAAGGAAAGGGAAT+TGG | 0.401380 | 1.3:-70062824 | MS.gene052962:CDS |
| TCAGTCTCAGTTTGCACGGC+TGG | 0.418620 | 1.3:-70063473 | MS.gene052962:CDS |
| CCCGCTTGATTCCCTTGCGT+TGG | 0.422240 | 1.3:+70062964 | None:intergenic |
| CATTAAAGTAAATACCTTCC+GGG | 0.423536 | 1.3:+70064362 | None:intergenic |
| TCTTCTGCTCCTGGCTGGAC+TGG | 0.439886 | 1.3:-70062782 | MS.gene052962:CDS |
| GTAGATCTTCTGCTCCTGGC+TGG | 0.457997 | 1.3:-70062787 | MS.gene052962:CDS |
| GCATTAGTTGTTGTGTGACT+TGG | 0.469535 | 1.3:+70063418 | None:intergenic |
| AAGGGTAGATCTTCTGCTCC+TGG | 0.476196 | 1.3:-70062791 | MS.gene052962:CDS |
| TTTCTGACCATTACTTTGAT+CGG | 0.488351 | 1.3:+70062922 | None:intergenic |
| AACTTCCAATTAAAAGGAAA+GGG | 0.503408 | 1.3:-70062830 | MS.gene052962:CDS |
| GAGATCGGAAAGTTCTTCTC+AGG | 0.511097 | 1.3:-70063017 | MS.gene052962:CDS |
| CAACTTCCAATTAAAAGGAA+AGG | 0.514991 | 1.3:-70062831 | MS.gene052962:CDS |
| CCAACGCAAGGGAATCAAGC+GGG | 0.516140 | 1.3:-70062964 | MS.gene052962:CDS |
| AAGCCAGCACCAGTCCAGCC+AGG | 0.521386 | 1.3:+70062773 | None:intergenic |
| ATTATGTTAGGATGGGAGAT+CGG | 0.534565 | 1.3:-70063032 | MS.gene052962:intron |
| AGCTAAAAGAAGAACAAGCC+CGG | 0.536660 | 1.3:-70064380 | MS.gene052962:CDS |
| GTTCCTCTGTTCCCAACGCA+AGG | 0.538012 | 1.3:-70062976 | MS.gene052962:CDS |
| AGCAGCAGCAAAAGTAGTGA+AGG | 0.544691 | 1.3:-70063630 | MS.gene052962:CDS |
| TTTCCTTCGCTTTCATTAGG+AGG | 0.549995 | 1.3:+70062869 | None:intergenic |
| CAGGAGAGTAAAACACAAGA+TGG | 0.554002 | 1.3:-70062998 | MS.gene052962:CDS |
| CTTGAGATGAAACTTACAGC+TGG | 0.561291 | 1.3:-70064575 | None:intergenic |
| TTTCTTTCTCAAATGCTCAA+GGG | 0.570599 | 1.3:+70064437 | None:intergenic |
| CCCAACGCAAGGGAATCAAG+CGG | 0.573634 | 1.3:-70062965 | MS.gene052962:CDS |
| GGAATTGGTGCTGTGTCTAA+GGG | 0.575441 | 1.3:-70062809 | MS.gene052962:CDS |
| TTCCCTTGCGTTGGGAACAG+AGG | 0.594506 | 1.3:+70062973 | None:intergenic |
| GCAGTCAGTCTCAGTTTGCA+CGG | 0.601159 | 1.3:-70063477 | MS.gene052962:CDS |
| AGCAAAAGTAGTGAAGGAAG+AGG | 0.607596 | 1.3:-70063624 | MS.gene052962:CDS |
| AAAAGAAGAACAAGCCCGGA+AGG | 0.610621 | 1.3:-70064376 | MS.gene052962:intron |
| TTGAGATGAAACTTACAGCT+GGG | 0.616543 | 1.3:-70064574 | None:intergenic |
| TTCCTCTGTTCCCAACGCAA+GGG | 0.617747 | 1.3:-70062975 | MS.gene052962:CDS |
| CAACGCAAGGGAATCAAGCG+GGG | 0.621866 | 1.3:-70062963 | MS.gene052962:CDS |
| ACTTTGATCGGTAACACTCG+TGG | 0.625013 | 1.3:+70062934 | None:intergenic |
| AGTGTTACCGATCAAAGTAA+TGG | 0.626907 | 1.3:-70062929 | MS.gene052962:CDS |
| CTACCTCCTAATGAAAGCGA+AGG | 0.630299 | 1.3:-70062872 | MS.gene052962:CDS |
| AACGCAAGGGAATCAAGCGG+GGG | 0.633921 | 1.3:-70062962 | MS.gene052962:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGCAAATGAAAAATAA+AGG | + | chr1.3:70063491-70063510 | None:intergenic | 15.0% |
| !! | AGTATAATCAACTTATACAA+TGG | + | chr1.3:70064153-70064172 | None:intergenic | 20.0% |
| !! | CAAATGAAAAATAAAGGAAT+AGG | + | chr1.3:70063485-70063504 | None:intergenic | 20.0% |
| !! | TATCTCGAACATTATTTAAA+TGG | - | chr1.3:70063578-70063597 | MS.gene052962:intron | 20.0% |
| !! | TCATATTTACTGAATAAAGT+TGG | - | chr1.3:70063230-70063249 | MS.gene052962:intron | 20.0% |
| !! | TGATACTATCAATCTTATAT+AGG | - | chr1.3:70063823-70063842 | MS.gene052962:intron | 20.0% |
| !! | TTGATACACAAAAATATCAA+CGG | - | chr1.3:70063616-70063635 | MS.gene052962:CDS | 20.0% |
| !!! | ATAATATACTACTTTTAAGC+TGG | - | chr1.3:70063795-70063814 | MS.gene052962:intron | 20.0% |
| !!! | ATTATTTAAATGGATTAGTC+TGG | - | chr1.3:70063588-70063607 | MS.gene052962:CDS | 20.0% |
| !!! | GTATGCATTTTTATTTTGAT+TGG | - | chr1.3:70063186-70063205 | MS.gene052962:intron | 20.0% |
| ! | AAAGTCAACTTCCAATTAAA+AGG | - | chr1.3:70064496-70064515 | MS.gene052962:intron | 25.0% |
| ! | AACTTCCAATTAAAAGGAAA+GGG | - | chr1.3:70064502-70064521 | MS.gene052962:intron | 25.0% |
| ! | ACATTAAAGTAAATACCTTC+CGG | + | chr1.3:70062974-70062993 | None:intergenic | 25.0% |
| ! | ATTCCATCATAAGTTCAAAA+AGG | - | chr1.3:70062817-70062836 | MS.gene052962:CDS | 25.0% |
| ! | CAGTCTTAATAACTAAATGA+AGG | - | chr1.3:70063329-70063348 | MS.gene052962:intron | 25.0% |
| ! | CTGCAATAGATAAGATAATT+TGG | - | chr1.3:70063116-70063135 | MS.gene052962:intron | 25.0% |
| ! | TATACAATGGAATACTTAAG+AGG | + | chr1.3:70064140-70064159 | None:intergenic | 25.0% |
| ! | TCAATAAATAAATGCGAGAA+GGG | + | chr1.3:70063383-70063402 | None:intergenic | 25.0% |
| ! | TCATGTGCTTAAATTATGTT+AGG | - | chr1.3:70064288-70064307 | MS.gene052962:intron | 25.0% |
| ! | TCGCATTTATTTATTGAACT+AGG | - | chr1.3:70063386-70063405 | MS.gene052962:intron | 25.0% |
| ! | TGATACACAAAAATATCAAC+GGG | - | chr1.3:70063617-70063636 | MS.gene052962:CDS | 25.0% |
| ! | TGCTTAAATTATGTTAGGAT+GGG | - | chr1.3:70064293-70064312 | MS.gene052962:intron | 25.0% |
| ! | TTCAATAAATAAATGCGAGA+AGG | + | chr1.3:70063384-70063403 | None:intergenic | 25.0% |
| ! | TTCATTATGTGAACATGTTA+GGG | - | chr1.3:70063016-70063035 | MS.gene052962:CDS | 25.0% |
| ! | TTTCATTATGTGAACATGTT+AGG | - | chr1.3:70063015-70063034 | MS.gene052962:CDS | 25.0% |
| !!! | CTTTGCTTTTCTTTTATACA+TGG | - | chr1.3:70062857-70062876 | MS.gene052962:CDS | 25.0% |
| AATAAATAAATGCGAGAAGG+GGG | + | chr1.3:70063381-70063400 | None:intergenic | 30.0% | |
| ATGTGAAGATTTGAGCAATT+TGG | - | chr1.3:70063750-70063769 | MS.gene052962:intron | 30.0% | |
| CAACTTCCAATTAAAAGGAA+AGG | - | chr1.3:70064501-70064520 | MS.gene052962:intron | 30.0% | |
| CAATAAATAAATGCGAGAAG+GGG | + | chr1.3:70063382-70063401 | None:intergenic | 30.0% | |
| CAATTAAAAGGAAAGGGAAT+TGG | - | chr1.3:70064508-70064527 | MS.gene052962:intron | 30.0% | |
| CATTAAAGTAAATACCTTCC+GGG | + | chr1.3:70062973-70062992 | None:intergenic | 30.0% | |
| GAAACATGTATAGGTATAAC+TGG | + | chr1.3:70064228-70064247 | None:intergenic | 30.0% | |
| GCATAGTATGAAACATGTAT+AGG | + | chr1.3:70064237-70064256 | None:intergenic | 30.0% | |
| GTGCTTAAATTATGTTAGGA+TGG | - | chr1.3:70064292-70064311 | MS.gene052962:intron | 30.0% | |
| GTTCACATAATGAAAATAGC+AGG | + | chr1.3:70063010-70063029 | None:intergenic | 30.0% | |
| TATTACATCTGCATAGTTAC+TGG | - | chr1.3:70063971-70063990 | MS.gene052962:intron | 30.0% | |
| TCATTATGTGAACATGTTAG+GGG | - | chr1.3:70063017-70063036 | MS.gene052962:CDS | 30.0% | |
| TCTTATCTATTGCAGCAATT+TGG | + | chr1.3:70063111-70063130 | None:intergenic | 30.0% | |
| TGAAAATAGCAGGAGAAAAA+TGG | + | chr1.3:70063000-70063019 | None:intergenic | 30.0% | |
| TTTCTGACCATTACTTTGAT+CGG | + | chr1.3:70064413-70064432 | None:intergenic | 30.0% | |
| TTTCTTTCTCAAATGCTCAA+GGG | + | chr1.3:70062898-70062917 | None:intergenic | 30.0% | |
| ! | ACAATCTTGTCAAATTTGCT+TGG | - | chr1.3:70064178-70064197 | MS.gene052962:intron | 30.0% |
| ! | CAACCTTTTTGAACTTATGA+TGG | + | chr1.3:70062823-70062842 | None:intergenic | 30.0% |
| ! | CAATCTTGTCAAATTTGCTT+GGG | - | chr1.3:70064179-70064198 | MS.gene052962:intron | 30.0% |
| ! | CAATTCCCTTTCCTTTTAAT+TGG | + | chr1.3:70064510-70064529 | None:intergenic | 30.0% |
| ! | TTTTCTTTCTCAAATGCTCA+AGG | + | chr1.3:70062899-70062918 | None:intergenic | 30.0% |
| !!! | ACTCACAAACCTGATTTTTT+GGG | + | chr1.3:70062784-70062803 | None:intergenic | 30.0% |
| !!! | TACTCACAAACCTGATTTTT+TGG | + | chr1.3:70062785-70062804 | None:intergenic | 30.0% |
| AGTGTTACCGATCAAAGTAA+TGG | - | chr1.3:70064403-70064422 | MS.gene052962:CDS | 35.0% | |
| ATCTTGAATGTTTGTGCTTC+AGG | - | chr1.3:70063672-70063691 | MS.gene052962:intron | 35.0% | |
| ATTATGTTAGGATGGGAGAT+CGG | - | chr1.3:70064300-70064319 | MS.gene052962:intron | 35.0% | |
| CTTGTATTCACCTTCTCAAT+GGG | + | chr1.3:70063527-70063546 | None:intergenic | 35.0% | |
| GGCAGAATTAAAAAGACGAT+TGG | - | chr1.3:70063880-70063899 | MS.gene052962:intron | 35.0% | |
| GTGAATACAAGATATCCATG+TGG | - | chr1.3:70063536-70063555 | MS.gene052962:intron | 35.0% | |
| TCTTGTATTCACCTTCTCAA+TGG | + | chr1.3:70063528-70063547 | None:intergenic | 35.0% | |
| TTAGTTATACTGCATCCACA+TGG | + | chr1.3:70063554-70063573 | None:intergenic | 35.0% | |
| ! | CTTTTTCCTTCGCTTTCATT+AGG | + | chr1.3:70064469-70064488 | None:intergenic | 35.0% |
| AATGTCATCAGTTTCCTAGC+TGG | + | chr1.3:70064117-70064136 | None:intergenic | 40.0% | |
| AATGTTTGTGCTTCAGGTGT+GGG | - | chr1.3:70063678-70063697 | MS.gene052962:intron | 40.0% | |
| AGCAAAAGTAGTGAAGGAAG+AGG | - | chr1.3:70063708-70063727 | MS.gene052962:intron | 40.0% | |
| AGCTAAAAGAAGAACAAGCC+CGG | - | chr1.3:70062952-70062971 | MS.gene052962:CDS | 40.0% | |
| ATGCCTTATAGATGAAGCTC+AGG | + | chr1.3:70064094-70064113 | None:intergenic | 40.0% | |
| CAGGAGAGTAAAACACAAGA+TGG | - | chr1.3:70064334-70064353 | MS.gene052962:intron | 40.0% | |
| CTAAGCTGTGCACCTAATTT+GGG | - | chr1.3:70064000-70064019 | MS.gene052962:intron | 40.0% | |
| CTACCTGAGCTTCATCTATA+AGG | - | chr1.3:70064088-70064107 | MS.gene052962:intron | 40.0% | |
| CTCAAAGTCACACAGTAAGA+AGG | + | chr1.3:70063080-70063099 | None:intergenic | 40.0% | |
| GAAGGAAGAGGAAGCAATAA+AGG | - | chr1.3:70063720-70063739 | MS.gene052962:intron | 40.0% | |
| GCATTAGTTGTTGTGTGACT+TGG | + | chr1.3:70063917-70063936 | None:intergenic | 40.0% | |
| GTCTTATGTTCCCATTGAGA+AGG | - | chr1.3:70063514-70063533 | MS.gene052962:intron | 40.0% | |
| TAAAGTTGGACAGTGCATCA+AGG | - | chr1.3:70063244-70063263 | MS.gene052962:intron | 40.0% | |
| TAAGCTGTGCACCTAATTTG+GGG | - | chr1.3:70064001-70064020 | MS.gene052962:intron | 40.0% | |
| TACATCTGCATAGTTACTGG+TGG | - | chr1.3:70063974-70063993 | MS.gene052962:intron | 40.0% | |
| TCATTAGGAGGTAGCTGATT+AGG | + | chr1.3:70064454-70064473 | None:intergenic | 40.0% | |
| TCTAAGCTGTGCACCTAATT+TGG | - | chr1.3:70063999-70064018 | MS.gene052962:intron | 40.0% | |
| TTTCCTTCGCTTTCATTAGG+AGG | + | chr1.3:70064466-70064485 | None:intergenic | 40.0% | |
| !! | GGCTTGTTCTTCTTTTAGCT+TGG | + | chr1.3:70062952-70062971 | None:intergenic | 40.0% |
| AAAAGAAGAACAAGCCCGGA+AGG | - | chr1.3:70062956-70062975 | MS.gene052962:CDS | 45.0% | |
| AAGTTTCCAGTGCCCAGTAA+GGG | + | chr1.3:70064040-70064059 | None:intergenic | 45.0% | |
| ACTTTGATCGGTAACACTCG+TGG | + | chr1.3:70064401-70064420 | None:intergenic | 45.0% | |
| AGCAGCAGCAAAAGTAGTGA+AGG | - | chr1.3:70063702-70063721 | MS.gene052962:intron | 45.0% | |
| CACACAGTAAGAAGGTAGTG+CGG | + | chr1.3:70063072-70063091 | None:intergenic | 45.0% | |
| CTACCTCCTAATGAAAGCGA+AGG | - | chr1.3:70064460-70064479 | MS.gene052962:intron | 45.0% | |
| GAATGTTTGTGCTTCAGGTG+TGG | - | chr1.3:70063677-70063696 | MS.gene052962:intron | 45.0% | |
| GAGATCGGAAAGTTCTTCTC+AGG | - | chr1.3:70064315-70064334 | MS.gene052962:intron | 45.0% | |
| GCAAGCATACACCCCAAATT+AGG | + | chr1.3:70064015-70064034 | None:intergenic | 45.0% | |
| ! | CATCTATAAGGCATCCAGCT+AGG | - | chr1.3:70064100-70064119 | MS.gene052962:intron | 45.0% |
| ! | GGCTACACGAATTTTCTCTG+TGG | + | chr1.3:70062931-70062950 | None:intergenic | 45.0% |
| ! | TGTGAACATGTTAGGGGTGT+TGG | - | chr1.3:70063023-70063042 | MS.gene052962:CDS | 45.0% |
| !! | GGAATTGGTGCTGTGTCTAA+GGG | - | chr1.3:70064523-70064542 | MS.gene052962:intron | 45.0% |
| !!! | ATTATTTTTTATAAAGTATT+TGG | + | chr1.3:70063648-70063667 | None:intergenic | 5.0% |
| AAGGGTAGATCTTCTGCTCC+TGG | - | chr1.3:70064541-70064560 | MS.gene052962:intron | 50.0% | |
| ACAGCTGGGCCCAAAAAATC+AGG | - | chr1.3:70062772-70062791 | MS.gene052962:CDS | 50.0% | |
| CAAGTTTCCAGTGCCCAGTA+AGG | + | chr1.3:70064041-70064060 | None:intergenic | 50.0% | |
| GCAGTCAGTCTCAGTTTGCA+CGG | - | chr1.3:70063855-70063874 | MS.gene052962:intron | 50.0% | |
| GTATGCTTGCCACCCTTACT+GGG | - | chr1.3:70064025-70064044 | MS.gene052962:intron | 50.0% | |
| TGTATGCTTGCCACCCTTAC+TGG | - | chr1.3:70064024-70064043 | MS.gene052962:intron | 50.0% | |
| TTCCTCTGTTCCCAACGCAA+GGG | - | chr1.3:70064357-70064376 | MS.gene052962:intron | 50.0% | |
| !! | GGGAATTGGTGCTGTGTCTA+AGG | - | chr1.3:70064522-70064541 | MS.gene052962:intron | 50.0% |
| AACGCAAGGGAATCAAGCGG+GGG | - | chr1.3:70064370-70064389 | MS.gene052962:intron | 55.0% | |
| CAACGCAAGGGAATCAAGCG+GGG | - | chr1.3:70064369-70064388 | MS.gene052962:intron | 55.0% | |
| CAGTAAGAAGGTAGTGCGGC+TGG | + | chr1.3:70063068-70063087 | None:intergenic | 55.0% | |
| CCAACGCAAGGGAATCAAGC+GGG | - | chr1.3:70064368-70064387 | MS.gene052962:intron | 55.0% | |
| CCCAACGCAAGGGAATCAAG+CGG | - | chr1.3:70064367-70064386 | MS.gene052962:intron | 55.0% | |
| CCGCTTGATTCCCTTGCGTT+GGG | + | chr1.3:70064370-70064389 | None:intergenic | 55.0% | |
| GTAGATCTTCTGCTCCTGGC+TGG | - | chr1.3:70064545-70064564 | MS.gene052962:intron | 55.0% | |
| GTTCCTCTGTTCCCAACGCA+AGG | - | chr1.3:70064356-70064375 | MS.gene052962:intron | 55.0% | |
| TCAGTCTCAGTTTGCACGGC+TGG | - | chr1.3:70063859-70063878 | MS.gene052962:intron | 55.0% | |
| TTCCCTTGCGTTGGGAACAG+AGG | + | chr1.3:70064362-70064381 | None:intergenic | 55.0% | |
| TTTCCAGTGCCCAGTAAGGG+TGG | + | chr1.3:70064037-70064056 | None:intergenic | 55.0% | |
| !! | GGGCACTGGAAACTTGTCAG+AGG | - | chr1.3:70064045-70064064 | MS.gene052962:intron | 55.0% |
| CCCGCTTGATTCCCTTGCGT+TGG | + | chr1.3:70064371-70064390 | None:intergenic | 60.0% | |
| TCTTCTGCTCCTGGCTGGAC+TGG | - | chr1.3:70064550-70064569 | MS.gene052962:intron | 60.0% | |
| TTGCCACCCTTACTGGGCAC+TGG | - | chr1.3:70064031-70064050 | MS.gene052962:intron | 60.0% | |
| AAGCCAGCACCAGTCCAGCC+AGG | + | chr1.3:70064562-70064581 | None:intergenic | 65.0% | |
| !! | GCTCCTGGCTGGACTGGTGC+TGG | - | chr1.3:70064556-70064575 | MS.gene052962:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 70062763 | 70064591 | 70062763 | ID=MS.gene052962 |
| chr1.3 | mRNA | 70062763 | 70064591 | 70062763 | ID=MS.gene052962.t1;Parent=MS.gene052962 |
| chr1.3 | exon | 70064561 | 70064591 | 70064561 | ID=MS.gene052962.t1.exon1;Parent=MS.gene052962.t1 |
| chr1.3 | CDS | 70064561 | 70064591 | 70064561 | ID=cds.MS.gene052962.t1;Parent=MS.gene052962.t1 |
| chr1.3 | exon | 70064377 | 70064459 | 70064377 | ID=MS.gene052962.t1.exon2;Parent=MS.gene052962.t1 |
| chr1.3 | CDS | 70064377 | 70064459 | 70064377 | ID=cds.MS.gene052962.t1;Parent=MS.gene052962.t1 |
| chr1.3 | exon | 70063583 | 70063660 | 70063583 | ID=MS.gene052962.t1.exon3;Parent=MS.gene052962.t1 |
| chr1.3 | CDS | 70063583 | 70063660 | 70063583 | ID=cds.MS.gene052962.t1;Parent=MS.gene052962.t1 |
| chr1.3 | exon | 70063411 | 70063509 | 70063411 | ID=MS.gene052962.t1.exon4;Parent=MS.gene052962.t1 |
| chr1.3 | CDS | 70063411 | 70063509 | 70063411 | ID=cds.MS.gene052962.t1;Parent=MS.gene052962.t1 |
| chr1.3 | exon | 70062763 | 70063044 | 70062763 | ID=MS.gene052962.t1.exon5;Parent=MS.gene052962.t1 |
| chr1.3 | CDS | 70062763 | 70063044 | 70062763 | ID=cds.MS.gene052962.t1;Parent=MS.gene052962.t1 |
| Gene Sequence |
| Protein sequence |
