Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34671.t1 | XP_013445707.1 | 99.2 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 2.10E-57 | 231.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34671.t1 | P40590 | 97.5 | 119 | 3 | 0 | 1 | 119 | 1 | 119 | 1.0e-57 | 223.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34671.t1 | B7FHA0 | 99.2 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 1.5e-57 | 231.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056170 | MS.gene34671 | 0.805147 | 1.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34671.t1 | MTR_8g467460 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 2.33e-82 | 236 |
| MS.gene34671.t1 | MTR_7g010150 | 98.319 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 8.35e-81 | 233 |
| MS.gene34671.t1 | MTR_5g040570 | 95.833 | 120 | 5 | 0 | 1 | 120 | 1 | 120 | 8.30e-79 | 228 |
| MS.gene34671.t1 | MTR_7g011050 | 63.158 | 114 | 26 | 1 | 1 | 114 | 1 | 98 | 8.90e-44 | 139 |
| MS.gene34671.t1 | MTR_8g019410 | 48.305 | 118 | 23 | 2 | 4 | 120 | 47 | 127 | 1.13e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34671.t1 | AT1G26880 | 90.000 | 120 | 12 | 0 | 1 | 120 | 1 | 120 | 2.78e-74 | 216 |
| MS.gene34671.t1 | AT1G69620 | 90.756 | 119 | 11 | 0 | 1 | 119 | 1 | 119 | 8.89e-74 | 215 |
| MS.gene34671.t1 | AT3G28900 | 86.667 | 120 | 16 | 0 | 1 | 120 | 1 | 120 | 1.94e-71 | 209 |
| MS.gene34671.t1 | AT1G26880 | 91.304 | 92 | 8 | 0 | 1 | 92 | 1 | 92 | 1.34e-57 | 173 |
Find 41 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCCTTTCCTTTGTCTTT+TGG | 0.135099 | 8.1:+46244015 | None:intergenic |
| TGAATCCTCTTTCCAGTAAC+AGG | 0.237420 | 8.1:+46246622 | None:intergenic |
| TTCACAGTCCTCCTGTTTCT+AGG | 0.273382 | 8.1:+46244270 | None:intergenic |
| TAGAATCATCCGTGCTTTCT+TGG | 0.293017 | 8.1:-46244075 | MS.gene34671:CDS |
| TGGTCCACTAGCTCTCTTCT+TGG | 0.301308 | 8.1:+46246651 | None:intergenic |
| GGACCAAAATGCCCTGTTAC+TGG | 0.307357 | 8.1:-46246634 | MS.gene34671:CDS |
| AACCCTATGTTGGTTGGATT+TGG | 0.320720 | 8.1:+46246826 | None:intergenic |
| TTTCCAGTAACAGGGCATTT+TGG | 0.356509 | 8.1:+46246631 | None:intergenic |
| CCTCCTGTTTCTAGGTAGCC+TGG | 0.424353 | 8.1:+46244278 | None:intergenic |
| AAAGGAAAGGCAAGCTTTGA+AGG | 0.425767 | 8.1:-46244006 | MS.gene34671:CDS |
| CTGGAGGTGCTGTTAGAGAA+AGG | 0.447721 | 8.1:-46244224 | MS.gene34671:intron |
| GATCCAGGCTACCTAGAAAC+AGG | 0.450559 | 8.1:-46244281 | MS.gene34671:CDS |
| CCTATGTTGGTTGGATTTGG+TGG | 0.458968 | 8.1:+46246829 | None:intergenic |
| GTTACTGGAAAGAGGATTCA+AGG | 0.471253 | 8.1:-46246619 | MS.gene34671:CDS |
| CCACCAAATCCAACCAACAT+AGG | 0.484896 | 8.1:-46246829 | MS.gene34671:CDS |
| GTAGCTGTGGCGCCTGCGGT+AGG | 0.491000 | 8.1:+46246853 | None:intergenic |
| TTTGACAACCCTATGTTGGT+TGG | 0.518215 | 8.1:+46246820 | None:intergenic |
| CCACCGAGTACAAGAGATCC+AGG | 0.525177 | 8.1:-46244296 | MS.gene34671:CDS |
| CTGGATCTCTTGTACTCGGT+GGG | 0.533931 | 8.1:+46244297 | None:intergenic |
| AGAAGAAGAAAATGGTTCAG+AGG | 0.548716 | 8.1:-46246880 | None:intergenic |
| AGGACTGTGAATCGTGCCTA+TGG | 0.552813 | 8.1:-46244258 | MS.gene34671:CDS |
| CACCAAATCCAACCAACATA+GGG | 0.555718 | 8.1:-46246828 | MS.gene34671:CDS |
| TACTCGGTGGGTCTTAGATG+TGG | 0.556789 | 8.1:+46244309 | None:intergenic |
| AATGCCCTGTTACTGGAAAG+AGG | 0.571512 | 8.1:-46246627 | MS.gene34671:CDS |
| CATAGGGTTGTCAAAACACC+TGG | 0.572972 | 8.1:-46246812 | MS.gene34671:intron |
| TTCAGAGGCTTACCTACCGC+AGG | 0.575371 | 8.1:-46246865 | MS.gene34671:CDS |
| ACAACCAAGAAGAGAGCTAG+TGG | 0.581836 | 8.1:-46246655 | MS.gene34671:CDS |
| CCTGGATCTCTTGTACTCGG+TGG | 0.582178 | 8.1:+46244296 | None:intergenic |
| TAGCCTGGATCTCTTGTACT+CGG | 0.586947 | 8.1:+46244293 | None:intergenic |
| GCTCTTCAACCAAGAAAGCA+CGG | 0.590956 | 8.1:+46244066 | None:intergenic |
| TTACTGGAAAGAGGATTCAA+GGG | 0.591954 | 8.1:-46246618 | MS.gene34671:CDS |
| TGGATTTGGTGGCGTAGCTG+TGG | 0.606099 | 8.1:+46246840 | None:intergenic |
| AAGGAAAGGCAAGCTTTGAA+GGG | 0.607212 | 8.1:-46244005 | MS.gene34671:CDS |
| ACTGTGAATCGTGCCTATGG+TGG | 0.611220 | 8.1:-46244255 | MS.gene34671:CDS |
| TGGCGTAGCTGTGGCGCCTG+CGG | 0.611290 | 8.1:+46246849 | None:intergenic |
| CTTGAAGATCCAAAAGACAA+AGG | 0.616073 | 8.1:-46244024 | MS.gene34671:CDS |
| GAATCCTCTTTCCAGTAACA+GGG | 0.623856 | 8.1:+46246623 | None:intergenic |
| TCCAGATAAAACTCCACCAT+AGG | 0.634243 | 8.1:+46244242 | None:intergenic |
| AGATCCAAAAGACAAAGGAA+AGG | 0.642391 | 8.1:-46244019 | MS.gene34671:CDS |
| TACTGGAAAGAGGATTCAAG+GGG | 0.671922 | 8.1:-46246617 | MS.gene34671:intron |
| CCAGGCTACCTAGAAACAGG+AGG | 0.698083 | 8.1:-46244278 | MS.gene34671:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATTACATGTATTAT+AGG | - | chr8.1:46245983-46246002 | MS.gene34671:intron | 10.0% |
| !! | TATAGTATGTAATTTAAAAA+AGG | - | chr8.1:46244788-46244807 | MS.gene34671:intron | 10.0% |
| !! | CAAAAATAAAAATGTATGAA+TGG | - | chr8.1:46246489-46246508 | MS.gene34671:intron | 15.0% |
| !!! | AATTTTTTTATGTAACAATG+AGG | - | chr8.1:46244972-46244991 | MS.gene34671:intron | 15.0% |
| !!! | ATGATATTTCCTAAATTTTT+GGG | - | chr8.1:46245028-46245047 | MS.gene34671:intron | 15.0% |
| !!! | TATGATATTTCCTAAATTTT+TGG | - | chr8.1:46245027-46245046 | MS.gene34671:intron | 15.0% |
| !! | AACATAACATTACTCTTAAA+GGG | + | chr8.1:46245230-46245249 | None:intergenic | 20.0% |
| !! | AAGAAAAAGAAAACTAGTAT+TGG | - | chr8.1:46245509-46245528 | MS.gene34671:intron | 20.0% |
| !! | AATAAAACAATCACTAAGTT+AGG | + | chr8.1:46246257-46246276 | None:intergenic | 20.0% |
| !! | AGTTTATTGTAATAGTCTAA+GGG | - | chr8.1:46244589-46244608 | MS.gene34671:intron | 20.0% |
| !! | ATGCATATATTTATTTGTCA+AGG | - | chr8.1:46245826-46245845 | MS.gene34671:intron | 20.0% |
| !! | ATTAGCAAATTATGTATGAA+TGG | - | chr8.1:46246355-46246374 | MS.gene34671:intron | 20.0% |
| !! | TACTCTTACAAAAATAAATC+AGG | + | chr8.1:46245191-46245210 | None:intergenic | 20.0% |
| !! | TAGAAAAATAACAGTAAAAC+AGG | - | chr8.1:46245928-46245947 | MS.gene34671:intron | 20.0% |
| !!! | TACTAGTTTTCTTTTTCTTT+TGG | + | chr8.1:46245508-46245527 | None:intergenic | 20.0% |
| ! | AAATATCATTCTTGTGTGTT+TGG | + | chr8.1:46244845-46244864 | None:intergenic | 25.0% |
| ! | AACAGAATTGAACTAAAAGT+AGG | + | chr8.1:46245295-46245314 | None:intergenic | 25.0% |
| ! | AATAAGTAGTTGTCAAACTT+TGG | + | chr8.1:46246058-46246077 | None:intergenic | 25.0% |
| ! | AATACATTTAGTATAGTAGC+TGG | - | chr8.1:46244548-46244567 | MS.gene34671:intron | 25.0% |
| ! | AATCACTAAGTTAGGTTATT+AGG | + | chr8.1:46246249-46246268 | None:intergenic | 25.0% |
| ! | ACGACTAGAATAATGAAATT+TGG | - | chr8.1:46245769-46245788 | MS.gene34671:intron | 25.0% |
| ! | ATAAGTAGTTGTCAAACTTT+GGG | + | chr8.1:46246057-46246076 | None:intergenic | 25.0% |
| ! | CAAAATACAATTTCAAAGAC+AGG | + | chr8.1:46245576-46245595 | None:intergenic | 25.0% |
| ! | GAACATAACATTACTCTTAA+AGG | + | chr8.1:46245231-46245250 | None:intergenic | 25.0% |
| ! | GAGTTTATTGTAATAGTCTA+AGG | - | chr8.1:46244588-46244607 | MS.gene34671:intron | 25.0% |
| ! | TAGAACTAAACATTTCAACA+AGG | + | chr8.1:46245078-46245097 | None:intergenic | 25.0% |
| ! | TTATGTATGAATGGTTTGAT+TGG | - | chr8.1:46246364-46246383 | MS.gene34671:intron | 25.0% |
| ! | TTATTTGTCAAGGTTGTTAA+AGG | - | chr8.1:46245836-46245855 | MS.gene34671:intron | 25.0% |
| !! | ATTTGAGATCCCAAAAATTT+AGG | + | chr8.1:46245040-46245059 | None:intergenic | 25.0% |
| !! | TATGCTACATTGATACTTTT+GGG | - | chr8.1:46246287-46246306 | MS.gene34671:intron | 25.0% |
| !! | TTATGCTACATTGATACTTT+TGG | - | chr8.1:46246286-46246305 | MS.gene34671:intron | 25.0% |
| !! | TTTTTATGTAACAATGAGGT+TGG | - | chr8.1:46244976-46244995 | MS.gene34671:intron | 25.0% |
| !!! | GTCTTTGAAATTGTATTTTG+TGG | - | chr8.1:46245576-46245595 | MS.gene34671:intron | 25.0% |
| !!! | TTTGTTCTGCTTAACTTTTT+TGG | - | chr8.1:46246669-46246688 | MS.gene34671:CDS | 25.0% |
| !!! | TTTTGGGATCTCAAATATTT+AGG | - | chr8.1:46245044-46245063 | MS.gene34671:intron | 25.0% |
| ACTAAGATTAAATGCACTGT+CGG | - | chr8.1:46244387-46244406 | MS.gene34671:intron | 30.0% | |
| ATGCATAAAGGACTTAAACA+AGG | + | chr8.1:46246190-46246209 | None:intergenic | 30.0% | |
| CGTTTAATACTTGTAGAGTT+CGG | - | chr8.1:46244141-46244160 | MS.gene34671:intron | 30.0% | |
| GTTAATTTCAGCGAAATTGT+GGG | - | chr8.1:46245120-46245139 | MS.gene34671:intron | 30.0% | |
| GTTTAATACTTGTAGAGTTC+GGG | - | chr8.1:46244142-46244161 | MS.gene34671:intron | 30.0% | |
| TATCTAACTGTATCCAGAAA+AGG | - | chr8.1:46246143-46246162 | MS.gene34671:intron | 30.0% | |
| TTTAATACTTGTAGAGTTCG+GGG | - | chr8.1:46244143-46244162 | MS.gene34671:intron | 30.0% | |
| ! | AAAACTAGTATTGGATGTGA+TGG | - | chr8.1:46245518-46245537 | MS.gene34671:intron | 30.0% |
| ! | ATTCTTGTGTGTTTGGTTTA+AGG | + | chr8.1:46244838-46244857 | None:intergenic | 30.0% |
| ! | TAACAGCAAACATTTTGCAA+TGG | + | chr8.1:46244941-46244960 | None:intergenic | 30.0% |
| ! | TTCTTGTGTGTTTGGTTTAA+GGG | + | chr8.1:46244837-46244856 | None:intergenic | 30.0% |
| ! | TTGCTATGTCATTTGTATGT+TGG | - | chr8.1:46245690-46245709 | MS.gene34671:intron | 30.0% |
| !! | GTTTTTCAGATCAGAAGAAA+TGG | + | chr8.1:46244293-46244312 | None:intergenic | 30.0% |
| !! | TAATTGGATTTGTTGAATGC+AGG | - | chr8.1:46244173-46244192 | MS.gene34671:intron | 30.0% |
| !! | TTATTGCTTTTGCATTACTC+AGG | - | chr8.1:46246316-46246335 | MS.gene34671:intron | 30.0% |
| AAACACGCAAAGCAATAAAG+CGG | + | chr8.1:46245329-46245348 | None:intergenic | 35.0% | |
| AAGTGCATCAACAAATCATG+CGG | + | chr8.1:46245806-46245825 | None:intergenic | 35.0% | |
| AATCAAACCAACTACTTAGC+TGG | + | chr8.1:46244890-46244909 | None:intergenic | 35.0% | |
| ACATTGCTTAATCATGTCTC+TGG | - | chr8.1:46246767-46246786 | MS.gene34671:intron | 35.0% | |
| AGATCCAAAAGACAAAGGAA+AGG | - | chr8.1:46246851-46246870 | MS.gene34671:CDS | 35.0% | |
| CGTTAATTTCAGCGAAATTG+TGG | - | chr8.1:46245119-46245138 | MS.gene34671:intron | 35.0% | |
| CTTGAAGATCCAAAAGACAA+AGG | - | chr8.1:46246846-46246865 | MS.gene34671:CDS | 35.0% | |
| GAAATATCCAGCTAAGTAGT+TGG | - | chr8.1:46244880-46244899 | MS.gene34671:intron | 35.0% | |
| GGTTATTAGGTTAAAGACAG+AGG | + | chr8.1:46246236-46246255 | None:intergenic | 35.0% | |
| GTAATATGACGAGTTCTCAT+TGG | - | chr8.1:46244469-46244488 | MS.gene34671:intron | 35.0% | |
| GTGCAACACTTTATTATAGC+TGG | - | chr8.1:46245657-46245676 | MS.gene34671:intron | 35.0% | |
| TATGAATGGTTTGAGTCATG+AGG | - | chr8.1:46246503-46246522 | MS.gene34671:intron | 35.0% | |
| TATTAGGTTAAAGACAGAGG+AGG | + | chr8.1:46246233-46246252 | None:intergenic | 35.0% | |
| TCAGATCAGAAGAAATGGAA+AGG | + | chr8.1:46244288-46244307 | None:intergenic | 35.0% | |
| TTACTGGAAAGAGGATTCAA+GGG | - | chr8.1:46244252-46244271 | MS.gene34671:CDS | 35.0% | |
| TTTACCATCAGAGCATATCT+TGG | + | chr8.1:46244363-46244382 | None:intergenic | 35.0% | |
| TTTGGATTGAGGGTTTAAGA+GGG | - | chr8.1:46244616-46244635 | MS.gene34671:intron | 35.0% | |
| ! | GAAATTGTATTTTGTGGAGC+TGG | - | chr8.1:46245582-46245601 | MS.gene34671:intron | 35.0% |
| ! | TAATAGTCTAAGGGTGTGTT+TGG | - | chr8.1:46244598-46244617 | MS.gene34671:intron | 35.0% |
| ! | TTTGGTTTAAGGGTTTAGCT+GGG | + | chr8.1:46244827-46244846 | None:intergenic | 35.0% |
| !! | AACCCCGTTCTAAAACATAA+CGG | + | chr8.1:46244432-46244451 | None:intergenic | 35.0% |
| !!! | AGTTCGGGGAGTTTTTTAAT+TGG | - | chr8.1:46244157-46244176 | MS.gene34671:intron | 35.0% |
| !!! | ATGCCGTTATGTTTTAGAAC+GGG | - | chr8.1:46244426-46244445 | MS.gene34671:intron | 35.0% |
| !!! | CATGCCGTTATGTTTTAGAA+CGG | - | chr8.1:46244425-46244444 | MS.gene34671:intron | 35.0% |
| AAAGACAGAGGAGGAGTTAA+AGG | + | chr8.1:46246224-46246243 | None:intergenic | 40.0% | |
| AACATGCTACAACGGATAGA+GGG | + | chr8.1:46245398-46245417 | None:intergenic | 40.0% | |
| CAACAAAGTGAAGAGAAGAG+AGG | + | chr8.1:46244091-46244110 | None:intergenic | 40.0% | |
| CACCAAATCCAACCAACATA+GGG | - | chr8.1:46244042-46244061 | MS.gene34671:CDS | 40.0% | |
| CTATCCGTTGTAGCATGTTA+GGG | - | chr8.1:46245399-46245418 | MS.gene34671:intron | 40.0% | |
| CTCTTAACATCAAGCAGCTT+AGG | + | chr8.1:46246033-46246052 | None:intergenic | 40.0% | |
| CTTTCTGTGATTAGCATGTC+TGG | + | chr8.1:46245736-46245755 | None:intergenic | 40.0% | |
| GAATCCTCTTTCCAGTAACA+GGG | + | chr8.1:46244250-46244269 | None:intergenic | 40.0% | |
| GACGAGTTCTCATTGGATTT+CGG | - | chr8.1:46244476-46244495 | MS.gene34671:intron | 40.0% | |
| GTTACTGGAAAGAGGATTCA+AGG | - | chr8.1:46244251-46244270 | MS.gene34671:CDS | 40.0% | |
| GTTTGGATTGAGGGTTTAAG+AGG | - | chr8.1:46244615-46244634 | MS.gene34671:intron | 40.0% | |
| TAACATGCTACAACGGATAG+AGG | + | chr8.1:46245399-46245418 | None:intergenic | 40.0% | |
| TACTGGAAAGAGGATTCAAG+GGG | - | chr8.1:46244253-46244272 | MS.gene34671:CDS | 40.0% | |
| TAGAATCATCCGTGCTTTCT+TGG | - | chr8.1:46246795-46246814 | MS.gene34671:intron | 40.0% | |
| TATCCGTTGTAGCATGTTAG+GGG | - | chr8.1:46245400-46245419 | MS.gene34671:intron | 40.0% | |
| TCAGAAGAAATGGAAAGGAC+AGG | + | chr8.1:46244283-46244302 | None:intergenic | 40.0% | |
| TCCAGATAAAACTCCACCAT+AGG | + | chr8.1:46246631-46246650 | None:intergenic | 40.0% | |
| TCTATCCGTTGTAGCATGTT+AGG | - | chr8.1:46245398-46245417 | MS.gene34671:intron | 40.0% | |
| TGAATCCTCTTTCCAGTAAC+AGG | + | chr8.1:46244251-46244270 | None:intergenic | 40.0% | |
| TGTTAGCAATTGTCACCTCA+AGG | + | chr8.1:46245872-46245891 | None:intergenic | 40.0% | |
| TTGGATTGAGGGTTTAAGAG+GGG | - | chr8.1:46244617-46244636 | MS.gene34671:intron | 40.0% | |
| TTGGTTTAAGGGTTTAGCTG+GGG | + | chr8.1:46244826-46244845 | None:intergenic | 40.0% | |
| TTTGACAACCCTATGTTGGT+TGG | + | chr8.1:46244053-46244072 | None:intergenic | 40.0% | |
| ! | AAAGGAAAGGCAAGCTTTGA+AGG | - | chr8.1:46246864-46246883 | MS.gene34671:CDS | 40.0% |
| ! | AACCCTATGTTGGTTGGATT+TGG | + | chr8.1:46244047-46244066 | None:intergenic | 40.0% |
| ! | ACTAGTATTGGATGTGATGG+TGG | - | chr8.1:46245521-46245540 | MS.gene34671:intron | 40.0% |
| ! | ATCTCTGGTGTCAATTTGAG+TGG | - | chr8.1:46246450-46246469 | MS.gene34671:intron | 40.0% |
| ! | CGTTGCTTTAGTAAGACGAA+TGG | + | chr8.1:46245896-46245915 | None:intergenic | 40.0% |
| ! | CTTGCCTTTCCTTTGTCTTT+TGG | + | chr8.1:46246858-46246877 | None:intergenic | 40.0% |
| ! | GCACTAAAAGGCATGCATAA+AGG | + | chr8.1:46246202-46246221 | None:intergenic | 40.0% |
| ! | GTTTGGTTTAAGGGTTTAGC+TGG | + | chr8.1:46244828-46244847 | None:intergenic | 40.0% |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | - | chr8.1:46244606-46244625 | MS.gene34671:intron | 40.0% |
| ! | TCTCTGGTGTCAATTTGAGT+GGG | - | chr8.1:46246451-46246470 | MS.gene34671:intron | 40.0% |
| !! | AAGGAAAGGCAAGCTTTGAA+GGG | - | chr8.1:46246865-46246884 | MS.gene34671:CDS | 40.0% |
| !! | GAGGAGTTAAAGGCACTAAA+AGG | + | chr8.1:46246214-46246233 | None:intergenic | 40.0% |
| !! | GGGTTTGAAGTGTTGTTATG+TGG | - | chr8.1:46244447-46244466 | MS.gene34671:intron | 40.0% |
| !! | TATGGTGGAGTTTTATCTGG+AGG | - | chr8.1:46246630-46246649 | MS.gene34671:CDS | 40.0% |
| !! | TTGGATTTGTTGAATGCAGG+TGG | - | chr8.1:46244176-46244195 | MS.gene34671:intron | 40.0% |
| !! | TTTCCAGTAACAGGGCATTT+TGG | + | chr8.1:46244242-46244261 | None:intergenic | 40.0% |
| !!! | GTGTTTTGACAACCCTATGT+TGG | + | chr8.1:46244057-46244076 | None:intergenic | 40.0% |
| !!! | TGCCGTTATGTTTTAGAACG+GGG | - | chr8.1:46244427-46244446 | MS.gene34671:intron | 40.0% |
| AATGCCCTGTTACTGGAAAG+AGG | - | chr8.1:46244243-46244262 | MS.gene34671:CDS | 45.0% | |
| ACAACCAAGAAGAGAGCTAG+TGG | - | chr8.1:46244215-46244234 | MS.gene34671:intron | 45.0% | |
| ACACGTCGTAATTGTGAGCT+TGG | + | chr8.1:46244121-46244140 | None:intergenic | 45.0% | |
| ATCCGTTGTAGCATGTTAGG+GGG | - | chr8.1:46245401-46245420 | MS.gene34671:intron | 45.0% | |
| ATTGAGGGTTTAAGAGGGGA+AGG | - | chr8.1:46244621-46244640 | MS.gene34671:intron | 45.0% | |
| CATAGGGTTGTCAAAACACC+TGG | - | chr8.1:46244058-46244077 | MS.gene34671:CDS | 45.0% | |
| CATCCACTATTAGGGTTTCG+GGG | - | chr8.1:46245158-46245177 | MS.gene34671:intron | 45.0% | |
| CCACCAAATCCAACCAACAT+AGG | - | chr8.1:46244041-46244060 | MS.gene34671:CDS | 45.0% | |
| CGCTATGGCATCCACTATTA+GGG | - | chr8.1:46245150-46245169 | MS.gene34671:intron | 45.0% | |
| GCATCCACTATTAGGGTTTC+GGG | - | chr8.1:46245157-46245176 | MS.gene34671:intron | 45.0% | |
| GCCATCCAACATGAATGATG+CGG | + | chr8.1:46246110-46246129 | None:intergenic | 45.0% | |
| GCTCTTCAACCAAGAAAGCA+CGG | + | chr8.1:46246807-46246826 | None:intergenic | 45.0% | |
| GGCATCCACTATTAGGGTTT+CGG | - | chr8.1:46245156-46245175 | MS.gene34671:intron | 45.0% | |
| GTCTCAGGTTCGATTATCTC+TGG | - | chr8.1:46246435-46246454 | MS.gene34671:intron | 45.0% | |
| TAATCGAACCTGAGACCTTG+AGG | + | chr8.1:46246431-46246450 | None:intergenic | 45.0% | |
| TAGCCTGGATCTCTTGTACT+CGG | + | chr8.1:46246580-46246599 | None:intergenic | 45.0% | |
| TCCGCATCATTCATGTTGGA+TGG | - | chr8.1:46246106-46246125 | MS.gene34671:intron | 45.0% | |
| TGCTCCAAGATATGCTCTGA+TGG | - | chr8.1:46244356-46244375 | MS.gene34671:intron | 45.0% | |
| TGCTTCCGCATCATTCATGT+TGG | - | chr8.1:46246102-46246121 | MS.gene34671:intron | 45.0% | |
| TTGAGGGTTTAAGAGGGGAA+GGG | - | chr8.1:46244622-46244641 | MS.gene34671:intron | 45.0% | |
| TTGTGGAGCTGGTACACAAT+CGG | - | chr8.1:46245593-46245612 | MS.gene34671:intron | 45.0% | |
| TTTAAGGGTTTAGCTGGGGA+GGG | + | chr8.1:46244822-46244841 | None:intergenic | 45.0% | |
| ! | ACTTAAACAAGGCACCACGA+GGG | + | chr8.1:46246179-46246198 | None:intergenic | 45.0% |
| ! | CCTATGTTGGTTGGATTTGG+TGG | + | chr8.1:46244044-46244063 | None:intergenic | 45.0% |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | - | chr8.1:46244605-46244624 | MS.gene34671:intron | 45.0% |
| ! | GAGAAGAGAGGTTAGTTACC+AGG | + | chr8.1:46244079-46244098 | None:intergenic | 45.0% |
| ! | TTCACAGTCCTCCTGTTTCT+AGG | + | chr8.1:46246603-46246622 | None:intergenic | 45.0% |
| !! | ATGTGATGGTGGACTGTAGA+CGG | - | chr8.1:46245532-46245551 | MS.gene34671:intron | 45.0% |
| !! | CCTAATAGTGGATGCCATAG+CGG | + | chr8.1:46245152-46245171 | None:intergenic | 45.0% |
| !! | GAATGGTTTGATTGGCCTAG+TGG | - | chr8.1:46246372-46246391 | MS.gene34671:intron | 45.0% |
| !! | GCCTATGGTGGAGTTTTATC+TGG | - | chr8.1:46246627-46246646 | MS.gene34671:CDS | 45.0% |
| !!! | AAAGGTTTTGCCTAGCCTTG+AGG | - | chr8.1:46245854-46245873 | MS.gene34671:intron | 45.0% |
| AAGAGGGGAAGGGAATGGAA+GGG | - | chr8.1:46244632-46244651 | MS.gene34671:intron | 50.0% | |
| ACTGTGAATCGTGCCTATGG+TGG | - | chr8.1:46246615-46246634 | MS.gene34671:intron | 50.0% | |
| AGGACTGTGAATCGTGCCTA+TGG | - | chr8.1:46246612-46246631 | MS.gene34671:intron | 50.0% | |
| ATTGTGGGACCAAACCGCTA+TGG | - | chr8.1:46245135-46245154 | MS.gene34671:intron | 50.0% | |
| CCGCTATGGCATCCACTATT+AGG | - | chr8.1:46245149-46245168 | MS.gene34671:intron | 50.0% | |
| CTGGATCTCTTGTACTCGGT+GGG | + | chr8.1:46246576-46246595 | None:intergenic | 50.0% | |
| GACCCCCTAACATGCTACAA+CGG | + | chr8.1:46245406-46245425 | None:intergenic | 50.0% | |
| GATCCAGGCTACCTAGAAAC+AGG | - | chr8.1:46246589-46246608 | MS.gene34671:intron | 50.0% | |
| GCAATTGTCACCTCAAGGCT+AGG | + | chr8.1:46245867-46245886 | None:intergenic | 50.0% | |
| GGACCAAAATGCCCTGTTAC+TGG | - | chr8.1:46244236-46244255 | MS.gene34671:CDS | 50.0% | |
| GGTTTAAGAGGGGAAGGGAA+TGG | - | chr8.1:46244627-46244646 | MS.gene34671:intron | 50.0% | |
| GTTTAAGGGTTTAGCTGGGG+AGG | + | chr8.1:46244823-46244842 | None:intergenic | 50.0% | |
| TAAGAGGGGAAGGGAATGGA+AGG | - | chr8.1:46244631-46244650 | MS.gene34671:intron | 50.0% | |
| TCTCCCCGAAACCCTAATAG+TGG | + | chr8.1:46245164-46245183 | None:intergenic | 50.0% | |
| ! | GACTTAAACAAGGCACCACG+AGG | + | chr8.1:46246180-46246199 | None:intergenic | 50.0% |
| ! | GGGATTAGGACTGCCTTTTC+TGG | + | chr8.1:46246159-46246178 | None:intergenic | 50.0% |
| ! | TACTCGGTGGGTCTTAGATG+TGG | + | chr8.1:46246564-46246583 | None:intergenic | 50.0% |
| ! | TAGTAGCTGGTCGAGTTGTG+AGG | - | chr8.1:46244561-46244580 | MS.gene34671:intron | 50.0% |
| ! | TAGTGGATGCCATAGCGGTT+TGG | + | chr8.1:46245147-46245166 | None:intergenic | 50.0% |
| ! | TGGTCCACTAGCTCTCTTCT+TGG | + | chr8.1:46244222-46244241 | None:intergenic | 50.0% |
| !! | CCTAGTGGTGGTATTGGCTT+GGG | - | chr8.1:46246387-46246406 | MS.gene34671:intron | 50.0% |
| !! | CTGGAGGTGCTGTTAGAGAA+AGG | - | chr8.1:46246646-46246665 | MS.gene34671:CDS | 50.0% |
| !! | GATTGGCCTAGTGGTGGTAT+TGG | - | chr8.1:46246381-46246400 | MS.gene34671:intron | 50.0% |
| !! | TGGTTTGATTGGCCTAGTGG+TGG | - | chr8.1:46246375-46246394 | MS.gene34671:intron | 50.0% |
| AAGGCAGTCCTAATCCCTCG+TGG | - | chr8.1:46246162-46246181 | MS.gene34671:intron | 55.0% | |
| CCACCGAGTACAAGAGATCC+AGG | - | chr8.1:46246574-46246593 | MS.gene34671:intron | 55.0% | |
| CCAGGCTACCTAGAAACAGG+AGG | - | chr8.1:46246592-46246611 | MS.gene34671:intron | 55.0% | |
| CCCAAGCCAATACCACCACT+AGG | + | chr8.1:46246390-46246409 | None:intergenic | 55.0% | |
| CCTGGATCTCTTGTACTCGG+TGG | + | chr8.1:46246577-46246596 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTTGAGG+AGG | + | chr8.1:46246428-46246447 | None:intergenic | 55.0% | |
| TTCAGAGGCTTACCTACCGC+AGG | - | chr8.1:46244005-46244024 | MS.gene34671:CDS | 55.0% | |
| ! | ACAAGGCACCACGAGGGATT+AGG | + | chr8.1:46246173-46246192 | None:intergenic | 55.0% |
| ! | GTCGCTGCGCGATGCTATTT+GGG | - | chr8.1:46245423-46245442 | MS.gene34671:intron | 55.0% |
| !! | CCTCCTGTTTCTAGGTAGCC+TGG | + | chr8.1:46246595-46246614 | None:intergenic | 55.0% |
| !! | GCCTAGTGGTGGTATTGGCT+TGG | - | chr8.1:46246386-46246405 | MS.gene34671:intron | 55.0% |
| !! | GTGGTATTGGCTTGGGACCT+GGG | - | chr8.1:46246394-46246413 | MS.gene34671:intron | 55.0% |
| !! | TGGATTTGGTGGCGTAGCTG+TGG | + | chr8.1:46244033-46244052 | None:intergenic | 55.0% |
| GGTCGCTGCGCGATGCTATT+TGG | - | chr8.1:46245422-46245441 | MS.gene34671:intron | 60.0% | |
| GTGCTCCTCCTCAAGGTCTC+AGG | - | chr8.1:46246420-46246439 | MS.gene34671:intron | 60.0% | |
| ! | TGGGAGTGTGCTCCTCCTCA+AGG | - | chr8.1:46246413-46246432 | MS.gene34671:intron | 60.0% |
| ! | TTGAGGAGGAGCACACTCCC+AGG | + | chr8.1:46246414-46246433 | None:intergenic | 60.0% |
| !! | GGTGGTATTGGCTTGGGACC+TGG | - | chr8.1:46246393-46246412 | MS.gene34671:intron | 60.0% |
| GTAGCTGTGGCGCCTGCGGT+AGG | + | chr8.1:46244020-46244039 | None:intergenic | 70.0% | |
| TGGCGTAGCTGTGGCGCCTG+CGG | + | chr8.1:46244024-46244043 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 46244001 | 46246891 | 46244001 | ID=MS.gene34671 |
| chr8.1 | mRNA | 46244001 | 46246891 | 46244001 | ID=MS.gene34671.t1;Parent=MS.gene34671 |
| chr8.1 | exon | 46246813 | 46246891 | 46246813 | ID=MS.gene34671.t1.exon1;Parent=MS.gene34671.t1 |
| chr8.1 | CDS | 46246813 | 46246891 | 46246813 | ID=cds.MS.gene34671.t1;Parent=MS.gene34671.t1 |
| chr8.1 | exon | 46246618 | 46246697 | 46246618 | ID=MS.gene34671.t1.exon2;Parent=MS.gene34671.t1 |
| chr8.1 | CDS | 46246618 | 46246697 | 46246618 | ID=cds.MS.gene34671.t1;Parent=MS.gene34671.t1 |
| chr8.1 | exon | 46244225 | 46244334 | 46244225 | ID=MS.gene34671.t1.exon3;Parent=MS.gene34671.t1 |
| chr8.1 | CDS | 46244225 | 46244334 | 46244225 | ID=cds.MS.gene34671.t1;Parent=MS.gene34671.t1 |
| chr8.1 | exon | 46244001 | 46244094 | 46244001 | ID=MS.gene34671.t1.exon4;Parent=MS.gene34671.t1 |
| chr8.1 | CDS | 46244001 | 46244094 | 46244001 | ID=cds.MS.gene34671.t1;Parent=MS.gene34671.t1 |
| Gene Sequence |
| Protein sequence |
