Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34986.t1 | RHN42301.1 | 89.4 | 284 | 24 | 1 | 1 | 284 | 1 | 278 | 2.40E-136 | 495 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34986.t1 | Q6NLW5 | 46.2 | 80 | 37 | 2 | 205 | 284 | 227 | 300 | 7.8e-11 | 69.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34986.t1 | A0A396GQ56 | 89.4 | 284 | 24 | 1 | 1 | 284 | 1 | 278 | 1.7e-136 | 495.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene34986 | 0.80193 | 7.14E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene34986 | 0.802183 | 6.33E-49 | -1.69E-46 |
| MS.gene053538 | MS.gene34986 | 0.800087 | 1.70E-48 | -1.69E-46 |
| MS.gene05894 | MS.gene34986 | 0.806991 | 6.29E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34986.t1 | MTR_3g064750 | 55.952 | 84 | 34 | 2 | 203 | 284 | 192 | 274 | 2.10e-26 | 104 |
| MS.gene34986.t1 | MTR_7g056400 | 40.367 | 109 | 55 | 2 | 178 | 284 | 206 | 306 | 1.53e-16 | 78.6 |
| MS.gene34986.t1 | MTR_8g013095 | 35.484 | 124 | 71 | 2 | 163 | 284 | 191 | 307 | 2.83e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34986.t1 | AT2G01990 | 45.788 | 273 | 100 | 11 | 21 | 284 | 11 | 244 | 6.67e-60 | 191 |
| MS.gene34986.t1 | AT2G01990 | 48.305 | 236 | 82 | 9 | 50 | 284 | 17 | 213 | 1.23e-56 | 181 |
| MS.gene34986.t1 | AT1G14630 | 45.000 | 280 | 89 | 9 | 13 | 284 | 4 | 226 | 5.70e-56 | 180 |
| MS.gene34986.t1 | AT5G48720 | 45.679 | 81 | 38 | 2 | 204 | 284 | 192 | 266 | 2.80e-15 | 74.3 |
| MS.gene34986.t1 | AT5G48720 | 45.679 | 81 | 38 | 2 | 204 | 284 | 192 | 266 | 2.80e-15 | 74.3 |
| MS.gene34986.t1 | AT5G48720 | 45.679 | 81 | 38 | 2 | 204 | 284 | 226 | 300 | 3.06e-15 | 74.7 |
| MS.gene34986.t1 | AT5G48720 | 45.679 | 81 | 38 | 2 | 204 | 284 | 226 | 300 | 3.06e-15 | 74.7 |
Find 65 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAAGATGAGGAGGAATT+TGG | 0.210157 | 4.4:+18231379 | None:intergenic |
| GCACAAGGTCCAGGCCTTTC+AGG | 0.243748 | 4.4:-18230856 | MS.gene34986:CDS |
| TGGGGTGTCTCTGCTGGTTT+TGG | 0.261526 | 4.4:+18231330 | None:intergenic |
| TCACCAACTGGATGCCTTAC+TGG | 0.271694 | 4.4:+18230904 | None:intergenic |
| CCACTGGTTGGTGCCATATA+GGG | 0.272649 | 4.4:+18231847 | None:intergenic |
| TCTGGAATTTCAACCCTATA+TGG | 0.295231 | 4.4:-18231860 | MS.gene34986:CDS |
| CTATGGTTCTTCCCTAGGTT+GGG | 0.351214 | 4.4:-18232311 | MS.gene34986:CDS |
| TCCACTGGTTGGTGCCATAT+AGG | 0.356387 | 4.4:+18231846 | None:intergenic |
| CTTGAGTGTGGATTCTAGTA+AGG | 0.359570 | 4.4:+18230818 | None:intergenic |
| GGATGCCTTACTGGCCTTGT+TGG | 0.361970 | 4.4:+18230913 | None:intergenic |
| GGTGATGAGAAAGAAGAAAA+AGG | 0.363465 | 4.4:-18231049 | MS.gene34986:CDS |
| GGTTGGGATTATCACAATCT+TGG | 0.380286 | 4.4:-18232295 | MS.gene34986:CDS |
| CAAGAGTCTGATTTCTCAAC+TGG | 0.388114 | 4.4:-18232094 | MS.gene34986:CDS |
| ACCAAGTGGGGTGTCTCTGC+TGG | 0.412693 | 4.4:+18231324 | None:intergenic |
| GCTATGGTTCTTCCCTAGGT+TGG | 0.416564 | 4.4:-18232312 | MS.gene34986:CDS |
| CCACCACTGCTTTGCCTGAA+AGG | 0.422228 | 4.4:+18230842 | None:intergenic |
| ACATCACCTTCTTCTCCTCC+TGG | 0.426500 | 4.4:+18230973 | None:intergenic |
| GTACTGTGAATGTTAGCCTT+TGG | 0.428209 | 4.4:+18230765 | None:intergenic |
| TGGTTATCTTGAAGATGCTT+TGG | 0.432715 | 4.4:-18232074 | MS.gene34986:CDS |
| GTGTCTTCTAGAAGAATGTT+TGG | 0.443352 | 4.4:+18231439 | None:intergenic |
| TGCCTTACTGGCCTTGTTGG+AGG | 0.444848 | 4.4:+18230916 | None:intergenic |
| CTCAGCTATGGTTCTTCCCT+AGG | 0.445329 | 4.4:-18232316 | MS.gene34986:CDS |
| CCTGGCTTCACTAATGCAAA+TGG | 0.448137 | 4.4:+18230991 | None:intergenic |
| TACCTTATCAAAATCATCAA+TGG | 0.460583 | 4.4:+18231982 | None:intergenic |
| GAAGATGCTTTGGTTGAGTT+CGG | 0.464739 | 4.4:-18232064 | MS.gene34986:CDS |
| TGCCTCCAACAAGGCCAGTA+AGG | 0.471163 | 4.4:-18230918 | MS.gene34986:CDS |
| ACTGCTTTGCCTGAAAGGCC+TGG | 0.473365 | 4.4:+18230847 | None:intergenic |
| TGCGTATCTGCACAAGGTCC+AGG | 0.484327 | 4.4:-18230865 | MS.gene34986:CDS |
| GATCAGATAGAAAGGATTTG+TGG | 0.485973 | 4.4:-18231807 | MS.gene34986:CDS |
| GTGAAGCCAGGAGGAGAAGA+AGG | 0.488620 | 4.4:-18230979 | MS.gene34986:CDS |
| TGAGGCTATTAGTATAAGCT+AGG | 0.491943 | 4.4:+18232335 | None:intergenic |
| CGACATGCAAAGTCACCAAC+TGG | 0.501594 | 4.4:+18230892 | None:intergenic |
| TGCCTCTTCTTCCTTGAGTG+TGG | 0.502866 | 4.4:+18230806 | None:intergenic |
| CCATTTGCATTAGTGAAGCC+AGG | 0.517544 | 4.4:-18230991 | MS.gene34986:CDS |
| ACTGCATGGATCAGATAGAA+AGG | 0.538926 | 4.4:-18231815 | MS.gene34986:CDS |
| TATATAAAAGTATACCAAGT+GGG | 0.540976 | 4.4:+18231311 | None:intergenic |
| GATTGTGATAATCCCAACCT+AGG | 0.542350 | 4.4:+18232299 | None:intergenic |
| TAATTCTTTGTATGAAGATG+AGG | 0.552442 | 4.4:+18231369 | None:intergenic |
| CCTTTCAGGCAAAGCAGTGG+TGG | 0.557492 | 4.4:-18230842 | MS.gene34986:CDS |
| TTGAGTGTGGATTCTAGTAA+GGG | 0.559111 | 4.4:+18230819 | None:intergenic |
| AGTGGAGAATTTCTACTGCA+TGG | 0.572678 | 4.4:-18231829 | MS.gene34986:CDS |
| TTCTTTGTATGAAGATGAGG+AGG | 0.574245 | 4.4:+18231372 | None:intergenic |
| CCCTATATGGCACCAACCAG+TGG | 0.576336 | 4.4:-18231847 | MS.gene34986:CDS |
| ATCACTATTATCAGAACCAA+AGG | 0.578340 | 4.4:-18230781 | MS.gene34986:CDS |
| ACCAGCAGAGACACCCCACT+TGG | 0.586964 | 4.4:-18231325 | MS.gene34986:intron |
| ATCCACACTCAAGGAAGAAG+AGG | 0.597837 | 4.4:-18230808 | MS.gene34986:CDS |
| CATTGAATGACATAAATGAA+AGG | 0.598530 | 4.4:-18230948 | MS.gene34986:CDS |
| ATGCAGTAGAAATTCTCCAC+TGG | 0.600169 | 4.4:+18231831 | None:intergenic |
| GGACCTTGTGCAGATACGCA+TGG | 0.608397 | 4.4:+18230868 | None:intergenic |
| CAGTTGGTGACTTTGCATGT+CGG | 0.613753 | 4.4:-18230891 | MS.gene34986:CDS |
| TTTGGTTCTGATAATAGTGA+TGG | 0.613771 | 4.4:+18230783 | None:intergenic |
| CGGCCATGCGTATCTGCACA+AGG | 0.617785 | 4.4:-18230871 | MS.gene34986:CDS |
| ATTGTGATAATCCCAACCTA+GGG | 0.619431 | 4.4:+18232300 | None:intergenic |
| TATACTAATAGCCTCAGCTA+TGG | 0.624938 | 4.4:-18232328 | MS.gene34986:CDS |
| AGTAGAAATTCTCCACTGGT+TGG | 0.629919 | 4.4:+18231835 | None:intergenic |
| GGATCTTAATGCCTCCAACA+AGG | 0.630736 | 4.4:-18230927 | MS.gene34986:CDS |
| GAGGCTATTAGTATAAGCTA+GGG | 0.637394 | 4.4:+18232336 | None:intergenic |
| ATGAACATATAAGCACATTG+AGG | 0.639326 | 4.4:-18231480 | MS.gene34986:CDS |
| TAGTACTACTACTAGTGATG+AGG | 0.645618 | 4.4:-18231070 | MS.gene34986:CDS |
| CTTACTAGAATCCACACTCA+AGG | 0.649499 | 4.4:-18230817 | MS.gene34986:CDS |
| ATATAAAAGTATACCAAGTG+GGG | 0.654319 | 4.4:+18231312 | None:intergenic |
| AGGCCTTTCAGGCAAAGCAG+TGG | 0.658996 | 4.4:-18230845 | MS.gene34986:CDS |
| AGGCCAGTAAGGCATCCAGT+TGG | 0.681142 | 4.4:-18230907 | MS.gene34986:CDS |
| CTAGGGAAGAACCATAGCTG+AGG | 0.694216 | 4.4:+18232317 | None:intergenic |
| TTTGCATTAGTGAAGCCAGG+AGG | 0.731178 | 4.4:-18230988 | MS.gene34986:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTATAAATATATCATA+TGG | - | chr4.4:18232005-18232024 | MS.gene34986:CDS | 10.0% |
| !! | TATATTAATGTAGTAAAATA+CGG | - | chr4.4:18231897-18231916 | MS.gene34986:intron | 10.0% |
| !! | AAATCAAAAGAAAAGAATAA+AGG | - | chr4.4:18231506-18231525 | MS.gene34986:intron | 15.0% |
| !! | AATTTCAAACTTAAAATGAA+AGG | + | chr4.4:18231199-18231218 | None:intergenic | 15.0% |
| !! | TGATATTGAATTATATGATA+TGG | - | chr4.4:18230977-18230996 | MS.gene34986:CDS | 15.0% |
| !! | TTTATATACTCTATTACATA+TGG | - | chr4.4:18231833-18231852 | MS.gene34986:CDS | 15.0% |
| !! | AATTGATTGAGAATTGAAAA+AGG | - | chr4.4:18231474-18231493 | MS.gene34986:CDS | 20.0% |
| !! | ATTATATGATATGGTAGTTA+TGG | - | chr4.4:18230986-18231005 | MS.gene34986:CDS | 20.0% |
| !! | TATGTAACTATATATAGTTC+TGG | - | chr4.4:18231251-18231270 | MS.gene34986:intron | 20.0% |
| !!! | TATATAAAAGTATACCAAGT+GGG | + | chr4.4:18231821-18231840 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTTTGATTTCTTT+GGG | + | chr4.4:18231502-18231521 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTTTTGATTTCTT+TGG | + | chr4.4:18231503-18231522 | None:intergenic | 20.0% |
| ! | CATTGAATGACATAAATGAA+AGG | - | chr4.4:18232181-18232200 | MS.gene34986:intron | 25.0% |
| ! | TAATTCTTTGTATGAAGATG+AGG | + | chr4.4:18231763-18231782 | None:intergenic | 25.0% |
| ! | TACCTTATCAAAATCATCAA+TGG | + | chr4.4:18231150-18231169 | None:intergenic | 25.0% |
| !! | ATATAAAAGTATACCAAGTG+GGG | + | chr4.4:18231820-18231839 | None:intergenic | 25.0% |
| !! | GTATATAAAAGTATACCAAG+TGG | + | chr4.4:18231822-18231841 | None:intergenic | 25.0% |
| !!! | TTCCATTGATGATTTTGATA+AGG | - | chr4.4:18231145-18231164 | MS.gene34986:intron | 25.0% |
| !!! | TTTGAAATTCTTGTTGTTCT+TGG | - | chr4.4:18231210-18231229 | MS.gene34986:intron | 25.0% |
| ATCACTATTATCAGAACCAA+AGG | - | chr4.4:18232348-18232367 | MS.gene34986:CDS | 30.0% | |
| ATGAACATATAAGCACATTG+AGG | - | chr4.4:18231649-18231668 | MS.gene34986:intron | 30.0% | |
| ! | ATATGACGTGATGATCATTT+TGG | - | chr4.4:18231395-18231414 | MS.gene34986:CDS | 30.0% |
| !! | TTTGGTTCTGATAATAGTGA+TGG | + | chr4.4:18232349-18232368 | None:intergenic | 30.0% |
| !!! | CTGGTTTTGGATATTGTTAA+TGG | + | chr4.4:18231789-18231808 | None:intergenic | 30.0% |
| !!! | GATGATCATTTTGGTTCAAA+AGG | - | chr4.4:18231404-18231423 | MS.gene34986:CDS | 30.0% |
| ATTGTGATAATCCCAACCTA+GGG | + | chr4.4:18230832-18230851 | None:intergenic | 35.0% | |
| GAAAGAAGAAAAAGGTGGTA+AGG | - | chr4.4:18232088-18232107 | MS.gene34986:CDS | 35.0% | |
| GAGGCTATTAGTATAAGCTA+GGG | + | chr4.4:18230796-18230815 | None:intergenic | 35.0% | |
| GATCAGATAGAAAGGATTTG+TGG | - | chr4.4:18231322-18231341 | MS.gene34986:intron | 35.0% | |
| GATGAGAAAGAAGAAAAAGG+TGG | - | chr4.4:18232083-18232102 | MS.gene34986:CDS | 35.0% | |
| GGTGATGAGAAAGAAGAAAA+AGG | - | chr4.4:18232080-18232099 | MS.gene34986:CDS | 35.0% | |
| TAAAATACGGACCACAATTG+CGG | - | chr4.4:18231910-18231929 | MS.gene34986:intron | 35.0% | |
| TAGTACTACTACTAGTGATG+AGG | - | chr4.4:18232059-18232078 | MS.gene34986:CDS | 35.0% | |
| TATACTAATAGCCTCAGCTA+TGG | - | chr4.4:18230801-18230820 | MS.gene34986:CDS | 35.0% | |
| TATGAAGATGAGGAGGAATT+TGG | + | chr4.4:18231753-18231772 | None:intergenic | 35.0% | |
| TGAGGCTATTAGTATAAGCT+AGG | + | chr4.4:18230797-18230816 | None:intergenic | 35.0% | |
| TGGTTATCTTGAAGATGCTT+TGG | - | chr4.4:18231055-18231074 | MS.gene34986:CDS | 35.0% | |
| TTCTTTGTATGAAGATGAGG+AGG | + | chr4.4:18231760-18231779 | None:intergenic | 35.0% | |
| TTGAGTGTGGATTCTAGTAA+GGG | + | chr4.4:18232313-18232332 | None:intergenic | 35.0% | |
| ! | GAAAGGATTTGTGGATTTTC+AGG | - | chr4.4:18231331-18231350 | MS.gene34986:CDS | 35.0% |
| ! | GTGTCTTCTAGAAGAATGTT+TGG | + | chr4.4:18231693-18231712 | None:intergenic | 35.0% |
| ! | TCTGGAATTTCAACCCTATA+TGG | - | chr4.4:18231269-18231288 | MS.gene34986:intron | 35.0% |
| ACTGCATGGATCAGATAGAA+AGG | - | chr4.4:18231314-18231333 | MS.gene34986:intron | 40.0% | |
| AGTAGAAATTCTCCACTGGT+TGG | + | chr4.4:18231297-18231316 | None:intergenic | 40.0% | |
| AGTGGAGAATTTCTACTGCA+TGG | - | chr4.4:18231300-18231319 | MS.gene34986:intron | 40.0% | |
| ATGCAGTAGAAATTCTCCAC+TGG | + | chr4.4:18231301-18231320 | None:intergenic | 40.0% | |
| CAAGAGTCTGATTTCTCAAC+TGG | - | chr4.4:18231035-18231054 | MS.gene34986:CDS | 40.0% | |
| CTTACTAGAATCCACACTCA+AGG | - | chr4.4:18232312-18232331 | MS.gene34986:CDS | 40.0% | |
| CTTGAGTGTGGATTCTAGTA+AGG | + | chr4.4:18232314-18232333 | None:intergenic | 40.0% | |
| GAAGATGCTTTGGTTGAGTT+CGG | - | chr4.4:18231065-18231084 | MS.gene34986:CDS | 40.0% | |
| GACAACAACAACAACAAGAG+TGG | - | chr4.4:18232110-18232129 | MS.gene34986:CDS | 40.0% | |
| GATTGTGATAATCCCAACCT+AGG | + | chr4.4:18230833-18230852 | None:intergenic | 40.0% | |
| GGTTGGGATTATCACAATCT+TGG | - | chr4.4:18230834-18230853 | MS.gene34986:CDS | 40.0% | |
| ! | ATGGTTTGCAACTGCAATTG+CGG | + | chr4.4:18231980-18231999 | None:intergenic | 40.0% |
| ATCCACACTCAAGGAAGAAG+AGG | - | chr4.4:18232321-18232340 | MS.gene34986:CDS | 45.0% | |
| CCATTTGCATTAGTGAAGCC+AGG | - | chr4.4:18232138-18232157 | MS.gene34986:intron | 45.0% | |
| CCTGGCTTCACTAATGCAAA+TGG | + | chr4.4:18232141-18232160 | None:intergenic | 45.0% | |
| CTATGGTTCTTCCCTAGGTT+GGG | - | chr4.4:18230818-18230837 | MS.gene34986:CDS | 45.0% | |
| GGATCTTAATGCCTCCAACA+AGG | - | chr4.4:18232202-18232221 | MS.gene34986:intron | 45.0% | |
| TTGCAGTCACAATTACGCTG+CGG | - | chr4.4:18231869-18231888 | MS.gene34986:intron | 45.0% | |
| TTTGCATTAGTGAAGCCAGG+AGG | - | chr4.4:18232141-18232160 | MS.gene34986:intron | 45.0% | |
| !! | CAGTTGGTGACTTTGCATGT+CGG | - | chr4.4:18232238-18232257 | MS.gene34986:intron | 45.0% |
| !! | TATTATAAATTATTAAAAAC+AGG | - | chr4.4:18232033-18232052 | MS.gene34986:CDS | 5.0% |
| !!! | ATATTTATAGTTTTAATTTA+TGG | + | chr4.4:18231999-18232018 | None:intergenic | 5.0% |
| !!! | TATTATTTTAATTTACTAAT+TGG | - | chr4.4:18231607-18231626 | MS.gene34986:intron | 5.0% |
| ACATCACCTTCTTCTCCTCC+TGG | + | chr4.4:18232159-18232178 | None:intergenic | 50.0% | |
| CGACATGCAAAGTCACCAAC+TGG | + | chr4.4:18232240-18232259 | None:intergenic | 50.0% | |
| CTAGGGAAGAACCATAGCTG+AGG | + | chr4.4:18230815-18230834 | None:intergenic | 50.0% | |
| CTCAGCTATGGTTCTTCCCT+AGG | - | chr4.4:18230813-18230832 | MS.gene34986:CDS | 50.0% | |
| GCACATTGCAACCGCAATTG+TGG | + | chr4.4:18231924-18231943 | None:intergenic | 50.0% | |
| GCTATGGTTCTTCCCTAGGT+TGG | - | chr4.4:18230817-18230836 | MS.gene34986:CDS | 50.0% | |
| TCACCAACTGGATGCCTTAC+TGG | + | chr4.4:18232228-18232247 | None:intergenic | 50.0% | |
| TGCCTCTTCTTCCTTGAGTG+TGG | + | chr4.4:18232326-18232345 | None:intergenic | 50.0% | |
| !! | CCACTGGTTGGTGCCATATA+GGG | + | chr4.4:18231285-18231304 | None:intergenic | 50.0% |
| !! | TCCACTGGTTGGTGCCATAT+AGG | + | chr4.4:18231286-18231305 | None:intergenic | 50.0% |
| ACTGCTTTGCCTGAAAGGCC+TGG | + | chr4.4:18232285-18232304 | None:intergenic | 55.0% | |
| AGGCCTTTCAGGCAAAGCAG+TGG | - | chr4.4:18232284-18232303 | MS.gene34986:CDS | 55.0% | |
| CCACCACTGCTTTGCCTGAA+AGG | + | chr4.4:18232290-18232309 | None:intergenic | 55.0% | |
| CCCTATATGGCACCAACCAG+TGG | - | chr4.4:18231282-18231301 | MS.gene34986:intron | 55.0% | |
| CCTTTCAGGCAAAGCAGTGG+TGG | - | chr4.4:18232287-18232306 | MS.gene34986:CDS | 55.0% | |
| GGACCTTGTGCAGATACGCA+TGG | + | chr4.4:18232264-18232283 | None:intergenic | 55.0% | |
| GTGAAGCCAGGAGGAGAAGA+AGG | - | chr4.4:18232150-18232169 | MS.gene34986:intron | 55.0% | |
| TGCCTCCAACAAGGCCAGTA+AGG | - | chr4.4:18232211-18232230 | MS.gene34986:intron | 55.0% | |
| TGCGTATCTGCACAAGGTCC+AGG | - | chr4.4:18232264-18232283 | MS.gene34986:intron | 55.0% | |
| ! | AGGCCAGTAAGGCATCCAGT+TGG | - | chr4.4:18232222-18232241 | MS.gene34986:intron | 55.0% |
| !! | GGATGCCTTACTGGCCTTGT+TGG | + | chr4.4:18232219-18232238 | None:intergenic | 55.0% |
| !! | TGCCTTACTGGCCTTGTTGG+AGG | + | chr4.4:18232216-18232235 | None:intergenic | 55.0% |
| !!! | TGGGGTGTCTCTGCTGGTTT+TGG | + | chr4.4:18231802-18231821 | None:intergenic | 55.0% |
| ACCAGCAGAGACACCCCACT+TGG | - | chr4.4:18231804-18231823 | MS.gene34986:CDS | 60.0% | |
| CGGCCATGCGTATCTGCACA+AGG | - | chr4.4:18232258-18232277 | MS.gene34986:intron | 60.0% | |
| GCACAAGGTCCAGGCCTTTC+AGG | - | chr4.4:18232273-18232292 | MS.gene34986:CDS | 60.0% | |
| ! | ACCAAGTGGGGTGTCTCTGC+TGG | + | chr4.4:18231808-18231827 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18230777 | 18232374 | 18230777 | ID=MS.gene34986 |
| chr4.4 | mRNA | 18230777 | 18232374 | 18230777 | ID=MS.gene34986.t1;Parent=MS.gene34986 |
| chr4.4 | exon | 18232266 | 18232374 | 18232266 | ID=MS.gene34986.t1.exon1;Parent=MS.gene34986.t1 |
| chr4.4 | CDS | 18232266 | 18232374 | 18232266 | ID=cds.MS.gene34986.t1;Parent=MS.gene34986.t1 |
| chr4.4 | exon | 18231985 | 18232148 | 18231985 | ID=MS.gene34986.t1.exon2;Parent=MS.gene34986.t1 |
| chr4.4 | CDS | 18231985 | 18232148 | 18231985 | ID=cds.MS.gene34986.t1;Parent=MS.gene34986.t1 |
| chr4.4 | exon | 18231799 | 18231883 | 18231799 | ID=MS.gene34986.t1.exon3;Parent=MS.gene34986.t1 |
| chr4.4 | CDS | 18231799 | 18231883 | 18231799 | ID=cds.MS.gene34986.t1;Parent=MS.gene34986.t1 |
| chr4.4 | exon | 18231326 | 18231502 | 18231326 | ID=MS.gene34986.t1.exon4;Parent=MS.gene34986.t1 |
| chr4.4 | CDS | 18231326 | 18231502 | 18231326 | ID=cds.MS.gene34986.t1;Parent=MS.gene34986.t1 |
| chr4.4 | exon | 18230777 | 18231096 | 18230777 | ID=MS.gene34986.t1.exon5;Parent=MS.gene34986.t1 |
| chr4.4 | CDS | 18230777 | 18231096 | 18230777 | ID=cds.MS.gene34986.t1;Parent=MS.gene34986.t1 |
| Gene Sequence |
| Protein sequence |
