Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34997.t1 | RHN42293.1 | 97.5 | 483 | 11 | 1 | 1 | 482 | 1 | 483 | 1.40E-274 | 954.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34997.t1 | Q9ZPS3 | 79.3 | 444 | 92 | 0 | 1 | 444 | 1 | 444 | 1.4e-214 | 746.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34997.t1 | A0A396GP61 | 97.5 | 483 | 11 | 1 | 1 | 482 | 1 | 483 | 1.0e-274 | 954.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051410 | MS.gene34997 | 0.808039 | 3.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34997.t1 | MTR_3g064740 | 78.936 | 451 | 95 | 0 | 1 | 451 | 1 | 451 | 0.0 | 763 |
| MS.gene34997.t1 | MTR_5g077090 | 77.189 | 434 | 99 | 0 | 11 | 444 | 2 | 435 | 0.0 | 725 |
| MS.gene34997.t1 | MTR_6g075210 | 71.613 | 465 | 124 | 1 | 14 | 478 | 17 | 473 | 0.0 | 705 |
| MS.gene34997.t1 | MTR_3g064740 | 80.899 | 356 | 68 | 0 | 96 | 451 | 1 | 356 | 0.0 | 621 |
| MS.gene34997.t1 | MTR_6g075210 | 72.414 | 348 | 88 | 1 | 131 | 478 | 1 | 340 | 0.0 | 531 |
| MS.gene34997.t1 | MTR_6g075210 | 68.858 | 289 | 82 | 1 | 190 | 478 | 1 | 281 | 2.85e-144 | 416 |
| MS.gene34997.t1 | MTR_7g022310 | 25.806 | 372 | 250 | 9 | 68 | 433 | 148 | 499 | 3.46e-23 | 103 |
| MS.gene34997.t1 | MTR_5g075840 | 46.667 | 120 | 53 | 2 | 343 | 451 | 8 | 127 | 1.97e-22 | 93.6 |
| MS.gene34997.t1 | MTR_5g075820 | 74.419 | 43 | 11 | 0 | 252 | 294 | 15 | 57 | 2.91e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34997.t1 | AT2G02010 | 79.279 | 444 | 92 | 0 | 1 | 444 | 1 | 444 | 0.0 | 765 |
| MS.gene34997.t1 | AT2G02010 | 79.279 | 444 | 92 | 0 | 1 | 444 | 53 | 496 | 0.0 | 764 |
| MS.gene34997.t1 | AT5G17330 | 75.309 | 486 | 104 | 2 | 1 | 470 | 1 | 486 | 0.0 | 764 |
| MS.gene34997.t1 | AT2G02000 | 76.351 | 444 | 105 | 0 | 1 | 444 | 1 | 444 | 0.0 | 741 |
| MS.gene34997.t1 | AT1G65960 | 76.802 | 444 | 102 | 1 | 1 | 444 | 1 | 443 | 0.0 | 721 |
| MS.gene34997.t1 | AT3G17760 | 75.973 | 437 | 105 | 0 | 8 | 444 | 7 | 443 | 0.0 | 707 |
| MS.gene34997.t1 | AT3G17760 | 75.973 | 437 | 105 | 0 | 8 | 444 | 7 | 443 | 0.0 | 707 |
| MS.gene34997.t1 | AT1G65960 | 81.529 | 314 | 58 | 0 | 131 | 444 | 1 | 314 | 0.0 | 548 |
| MS.gene34997.t1 | AT1G65960 | 81.529 | 314 | 58 | 0 | 131 | 444 | 1 | 314 | 0.0 | 548 |
| MS.gene34997.t1 | AT1G65960 | 81.529 | 314 | 58 | 0 | 131 | 444 | 1 | 314 | 0.0 | 548 |
| MS.gene34997.t1 | AT3G17720 | 74.074 | 162 | 39 | 1 | 91 | 252 | 27 | 185 | 2.03e-83 | 256 |
| MS.gene34997.t1 | AT1G27980 | 25.490 | 357 | 244 | 8 | 81 | 431 | 160 | 500 | 5.76e-21 | 96.3 |
Find 108 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTGTGGCTGCAATCTT+AGG | 0.236061 | 4.4:+18342406 | MS.gene34997:CDS |
| TGCTAATCCAAAGCTCAATT+TGG | 0.255213 | 4.4:+18341361 | MS.gene34997:CDS |
| CTGGAATTGGCTGGGTGATA+TGG | 0.266631 | 4.4:+18342730 | MS.gene34997:CDS |
| GTCTTCAGGCAAGTCTTCTT+TGG | 0.277898 | 4.4:-18342757 | None:intergenic |
| ACATTTATGCTCTTCACTAA+TGG | 0.278672 | 4.4:-18342678 | None:intergenic |
| TTGTTTATGCTGGAATTGGC+TGG | 0.291856 | 4.4:+18342721 | MS.gene34997:CDS |
| ATCTTAGGTTCAACTTATAA+TGG | 0.297546 | 4.4:+18342421 | MS.gene34997:CDS |
| TTCTGGTATGCAACTTCCTT+TGG | 0.308555 | 4.4:-18341314 | None:intergenic |
| AGAATGCAACAAGCTTATTA+TGG | 0.312579 | 4.4:+18341412 | MS.gene34997:CDS |
| CTGAAATCCCACTCTAGTTC+TGG | 0.334029 | 4.4:-18342651 | None:intergenic |
| CGTTTATTCAATGCTGAGAT+TGG | 0.340889 | 4.4:+18341991 | MS.gene34997:CDS |
| CATTTATGCTCTTCACTAAT+GGG | 0.341561 | 4.4:-18342677 | None:intergenic |
| ATTTGATTCACTAGGGTTAC+CGG | 0.346210 | 4.4:+18343087 | MS.gene34997:intron |
| TGCAAGTCCTGCCAGCATTA+TGG | 0.348256 | 4.4:-18342061 | None:intergenic |
| TCCTTTGGCATTGAGTTCTC+TGG | 0.354423 | 4.4:-18341299 | None:intergenic |
| GGTCTTGTTTATGCTGGAAT+TGG | 0.360930 | 4.4:+18342717 | MS.gene34997:CDS |
| CAACAAGAACTATGTCGATA+TGG | 0.368050 | 4.4:+18341442 | MS.gene34997:CDS |
| TCAGATTCAGAAGCTGGCTT+TGG | 0.380709 | 4.4:-18341076 | None:intergenic |
| AAAGAAGCCAAATTGAGCTT+TGG | 0.381094 | 4.4:-18341368 | None:intergenic |
| TAAAGTTAGAGTGAAGAATA+AGG | 0.386961 | 4.4:-18341099 | None:intergenic |
| ATATGAAAGACAAGGTCTTC+AGG | 0.391002 | 4.4:-18342771 | None:intergenic |
| AAGGAACACTTGGAAGAAAC+TGG | 0.398886 | 4.4:+18343149 | MS.gene34997:CDS |
| CTAGGGTTACCGGAGTATAA+TGG | 0.417410 | 4.4:+18343097 | MS.gene34997:intron |
| AGATGTTGCGGCGCCATGGT+TGG | 0.420244 | 4.4:+18343264 | MS.gene34997:CDS |
| CTTGCAGCATCAACATGAAT+AGG | 0.425888 | 4.4:-18342600 | None:intergenic |
| TACTTATATATAGGTATGTT+GGG | 0.434415 | 4.4:+18342276 | MS.gene34997:intron |
| CTTCTCATTGTTAATGTTGA+GGG | 0.435794 | 4.4:-18343429 | None:intergenic |
| ATATCTTGAATTCATCGTAC+TGG | 0.437108 | 4.4:-18343238 | None:intergenic |
| ATACTTATATATAGGTATGT+TGG | 0.442768 | 4.4:+18342275 | MS.gene34997:intron |
| GTCTTTCATATTAATTACCT+TGG | 0.442874 | 4.4:+18342783 | MS.gene34997:CDS |
| ACCATCTCAACAGCCTTGGC+AGG | 0.444207 | 4.4:-18342370 | None:intergenic |
| TTGGCGCCAGTGACCATGTT+AGG | 0.453005 | 4.4:-18342138 | None:intergenic |
| AAGTATGGTCTTGTTTATGC+TGG | 0.458828 | 4.4:+18342711 | MS.gene34997:CDS |
| AATGTTAGTGGCCACAAGTA+TGG | 0.459540 | 4.4:+18342696 | MS.gene34997:CDS |
| GCAACTCATCGTGTATGTTC+TGG | 0.460112 | 4.4:-18341331 | None:intergenic |
| GATGTTGCGGCGCCATGGTT+GGG | 0.460975 | 4.4:+18343265 | MS.gene34997:CDS |
| GTGAAGAGCATAAATGTTAG+TGG | 0.472769 | 4.4:+18342684 | MS.gene34997:CDS |
| ACCATGTTAGGCTTATCATA+AGG | 0.473882 | 4.4:-18342126 | None:intergenic |
| TCTAGTTCTGGATATAGAAA+AGG | 0.478692 | 4.4:-18342639 | None:intergenic |
| AAAAGACAACGGTGTTCCTA+TGG | 0.494245 | 4.4:+18343190 | MS.gene34997:CDS |
| GCGCCATGGTTGGGTTGTAC+CGG | 0.494423 | 4.4:+18343274 | MS.gene34997:CDS |
| ACATGAAGATCAGTGGTTGC+TGG | 0.500732 | 4.4:-18341473 | None:intergenic |
| AATGAGAGTGCAGTTGGTGC+AGG | 0.507312 | 4.4:+18342018 | MS.gene34997:CDS |
| ATAAGGTCAGATTCAGAAGC+TGG | 0.508993 | 4.4:-18341082 | None:intergenic |
| ATGCTAAGGACTCTCTTCCT+AGG | 0.513235 | 4.4:+18341131 | MS.gene34997:CDS |
| TGTTTATGCTGGAATTGGCT+GGG | 0.513408 | 4.4:+18342722 | MS.gene34997:CDS |
| GCAGTTGGTGCAGGAACAGT+TGG | 0.519829 | 4.4:+18342027 | MS.gene34997:CDS |
| ATCTACCATCTCAACAGCCT+TGG | 0.520356 | 4.4:-18342374 | None:intergenic |
| CATTAACAATGAGAAGTCCT+TGG | 0.520471 | 4.4:+18343436 | MS.gene34997:CDS |
| TGGTGAGCACCAGGTGGCAT+TGG | 0.527542 | 4.4:-18343302 | None:intergenic |
| GGTCACTGGCGCCAACGTGC+AGG | 0.527620 | 4.4:+18342146 | MS.gene34997:CDS |
| GCAGAACAAACGCAAGGCTG+AGG | 0.528506 | 4.4:+18342098 | MS.gene34997:CDS |
| ATCATCAGAGGCCATAATGC+TGG | 0.529716 | 4.4:+18342050 | MS.gene34997:CDS |
| TCTATATCCAGAACTAGAGT+GGG | 0.532480 | 4.4:+18342644 | MS.gene34997:CDS |
| ACTTCTCATTGTTAATGTTG+AGG | 0.533935 | 4.4:-18343430 | None:intergenic |
| AGAAAATGCAATGGTGCTGA+AGG | 0.535815 | 4.4:+18343130 | MS.gene34997:CDS |
| GTCCTTGGTTGACACTGCAT+TGG | 0.535896 | 4.4:+18343451 | MS.gene34997:CDS |
| TTCTATATCCAGAACTAGAG+TGG | 0.542301 | 4.4:+18342643 | MS.gene34997:CDS |
| CCCTGCCAAGGCTGTTGAGA+TGG | 0.546836 | 4.4:+18342369 | MS.gene34997:CDS |
| AATTTAGGGTGAATGTGGGT+TGG | 0.547509 | 4.4:-18342812 | None:intergenic |
| TCAAAGATGTTGCGGCGCCA+TGG | 0.548027 | 4.4:+18343260 | MS.gene34997:CDS |
| CAACAAGCGTCAGAAAATCA+TGG | 0.549857 | 4.4:+18343505 | MS.gene34997:CDS |
| CTTTACCTCTCGTTATGCTA+AGG | 0.555265 | 4.4:+18341117 | MS.gene34997:CDS |
| AGTGGAATTAAGAGAAGTGA+AGG | 0.557271 | 4.4:+18342321 | MS.gene34997:CDS |
| CCAGGTGGCATTGGATATGC+CGG | 0.562123 | 4.4:-18343293 | None:intergenic |
| GATAAGCCTAACATGGTCAC+TGG | 0.565474 | 4.4:+18342132 | MS.gene34997:CDS |
| CCGGCATATCCAATGCCACC+TGG | 0.565866 | 4.4:+18343293 | MS.gene34997:CDS |
| TCAGAGGCCATAATGCTGGC+AGG | 0.573446 | 4.4:+18342054 | MS.gene34997:CDS |
| GCATTCTTCCTCCATTGATG+TGG | 0.574705 | 4.4:-18341396 | None:intergenic |
| TTGAGAGAAAATGCTACCAT+AGG | 0.582437 | 4.4:-18343206 | None:intergenic |
| TCATTGTTAATGTTGAGGGA+AGG | 0.583786 | 4.4:-18343425 | None:intergenic |
| ACTTTGATGTGGTGAGCACC+AGG | 0.585774 | 4.4:-18343311 | None:intergenic |
| CTAGGCTCACCTCTTGACCT+AGG | 0.591168 | 4.4:-18342989 | None:intergenic |
| GAGAGAAGACTACTATGTGA+TGG | 0.591910 | 4.4:+18342345 | MS.gene34997:CDS |
| GAATTGGCTGGGTGATATGG+AGG | 0.595494 | 4.4:+18342733 | MS.gene34997:CDS |
| CATGTTGATGCTGCAAGTGG+TGG | 0.598093 | 4.4:+18342606 | MS.gene34997:CDS |
| GGAGAAAATGAGAGTGCAGT+TGG | 0.598543 | 4.4:+18342012 | MS.gene34997:CDS |
| CATACACGATGAGTTGCAGT+TGG | 0.598783 | 4.4:+18341337 | MS.gene34997:CDS |
| TATGTTGGGAGAAATTTGCT+AGG | 0.601172 | 4.4:+18342290 | MS.gene34997:CDS |
| ATTTGCTAGGTACTTCGAAG+TGG | 0.601208 | 4.4:+18342303 | MS.gene34997:CDS |
| TCAAGATATCAAAGATGTTG+CGG | 0.603201 | 4.4:+18343252 | MS.gene34997:CDS |
| TGCAGTCCTCCATTATACTC+CGG | 0.611769 | 4.4:-18343106 | None:intergenic |
| TATTATCAGCTAATTCGCCT+AGG | 0.614943 | 4.4:+18342972 | MS.gene34997:CDS |
| CCATCTCAACAGCCTTGGCA+GGG | 0.615010 | 4.4:-18342369 | None:intergenic |
| GCTAATTCGCCTAGGTCAAG+AGG | 0.616664 | 4.4:+18342980 | MS.gene34997:CDS |
| GCCAGAGAACTCAATGCCAA+AGG | 0.620790 | 4.4:+18341298 | MS.gene34997:CDS |
| CAGAACAAACGCAAGGCTGA+GGG | 0.625356 | 4.4:+18342099 | MS.gene34997:CDS |
| CTATGTGATGGACCCTGCCA+AGG | 0.626832 | 4.4:+18342357 | MS.gene34997:CDS |
| ATGTGGGTTGGTCTGCTCCA+AGG | 0.633972 | 4.4:-18342800 | None:intergenic |
| AATGGTGCTGAAGGAACACT+TGG | 0.634193 | 4.4:+18343139 | MS.gene34997:CDS |
| ATGAAGTACATGAAGATCAG+TGG | 0.652637 | 4.4:-18341480 | None:intergenic |
| ATCCAATGCAGTGTCAACCA+AGG | 0.653470 | 4.4:-18343453 | None:intergenic |
| AACATACTCTCAAAAGACAA+CGG | 0.655933 | 4.4:+18343179 | MS.gene34997:CDS |
| GGTAATTAATATGAAAGACA+AGG | 0.662107 | 4.4:-18342779 | None:intergenic |
| AGGAACAGTTGGATCATCAG+AGG | 0.663142 | 4.4:+18342038 | MS.gene34997:CDS |
| ACCTTATGATAAGCCTAACA+TGG | 0.664683 | 4.4:+18342125 | MS.gene34997:CDS |
| CATAAACAAGACCATACTTG+TGG | 0.667811 | 4.4:-18342707 | None:intergenic |
| AAAGTGGCAGAACAAACGCA+AGG | 0.670192 | 4.4:+18342092 | MS.gene34997:CDS |
| AGAGTCCTTAGCATAACGAG+AGG | 0.675517 | 4.4:-18341122 | None:intergenic |
| ATGCCGGTACAACCCAACCA+TGG | 0.683668 | 4.4:-18343277 | None:intergenic |
| ATTCATGTTGATGCTGCAAG+TGG | 0.685382 | 4.4:+18342603 | MS.gene34997:CDS |
| GAGAATGAATACCTGCACGT+TGG | 0.695238 | 4.4:-18342157 | None:intergenic |
| GGGTTACCGGAGTATAATGG+AGG | 0.701652 | 4.4:+18343100 | MS.gene34997:intron |
| CCACATCAAAGTGCTTCGTG+CGG | 0.707190 | 4.4:+18343322 | MS.gene34997:CDS |
| AGATGAGAACACAATTTGTG+TGG | 0.728333 | 4.4:+18342393 | MS.gene34997:CDS |
| CCGCACGAAGCACTTTGATG+TGG | 0.733476 | 4.4:-18343322 | None:intergenic |
| GGACTGCAGAGAAAATGCAA+TGG | 0.739159 | 4.4:+18343121 | MS.gene34997:CDS |
| TTGATGTGGTGAGCACCAGG+TGG | 0.782364 | 4.4:-18343308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTCTCTATATAAATTT+TGG | + | chr4.4:18341227-18341246 | MS.gene34997:intron | 10.0% |
| !! | AAGTAATTTATATATTACCT+AGG | - | chr4.4:18341151-18341170 | None:intergenic | 15.0% |
| !! | ATGATTTAATAGTATTTAGT+TGG | + | chr4.4:18341841-18341860 | MS.gene34997:intron | 15.0% |
| !! | GAAAAAATACTAATTTAAGA+TGG | - | chr4.4:18341560-18341579 | None:intergenic | 15.0% |
| !! | TACATATATGATAATCAATA+TGG | + | chr4.4:18342181-18342200 | MS.gene34997:intron | 15.0% |
| !!! | AGTTTTGTATACTTATATAT+AGG | + | chr4.4:18342267-18342286 | MS.gene34997:intron | 15.0% |
| !!! | ATTTAATTTATATACACTAC+TGG | + | chr4.4:18341613-18341632 | MS.gene34997:intron | 15.0% |
| !! | ATAAAAAAGCTTACTGTATA+TGG | - | chr4.4:18342893-18342912 | None:intergenic | 20.0% |
| !! | ATAATCAATATGGCATTAAA+AGG | + | chr4.4:18342191-18342210 | MS.gene34997:intron | 20.0% |
| !! | ATACTTATATATAGGTATGT+TGG | + | chr4.4:18342275-18342294 | MS.gene34997:intron | 20.0% |
| !! | TACTTATATATAGGTATGTT+GGG | + | chr4.4:18342276-18342295 | MS.gene34997:intron | 20.0% |
| !!! | ATTCACCTTTTGAAAAATTT+AGG | - | chr4.4:18342830-18342849 | None:intergenic | 20.0% |
| !!! | ATTCTCTATATAAATTTTGG+TGG | + | chr4.4:18341230-18341249 | MS.gene34997:intron | 20.0% |
| !!! | TCATTTATGTTTTGTTTTAC+TGG | + | chr4.4:18341933-18341952 | MS.gene34997:intron | 20.0% |
| !!! | TTCACCTTTTGAAAAATTTA+GGG | - | chr4.4:18342829-18342848 | None:intergenic | 20.0% |
| !!! | TTCTCTATATAAATTTTGGT+GGG | + | chr4.4:18341231-18341250 | MS.gene34997:intron | 20.0% |
| ! | ACACTTATCAATTTGTAGAT+GGG | + | chr4.4:18342572-18342591 | MS.gene34997:intron | 25.0% |
| ! | ATCATACATATTCTATAAGC+TGG | - | chr4.4:18341826-18341845 | None:intergenic | 25.0% |
| ! | ATCTTAGGTTCAACTTATAA+TGG | + | chr4.4:18342421-18342440 | MS.gene34997:CDS | 25.0% |
| ! | CAAAATAAAATAGATTCCCT+AGG | - | chr4.4:18343010-18343029 | None:intergenic | 25.0% |
| ! | GATCACTTTCATATTACAAA+AGG | - | chr4.4:18341904-18341923 | None:intergenic | 25.0% |
| ! | GGTAATTAATATGAAAGACA+AGG | - | chr4.4:18342782-18342801 | None:intergenic | 25.0% |
| ! | GTCTTTCATATTAATTACCT+TGG | + | chr4.4:18342783-18342802 | MS.gene34997:CDS | 25.0% |
| ! | TAAAGTTAGAGTGAAGAATA+AGG | - | chr4.4:18341102-18341121 | None:intergenic | 25.0% |
| ! | TACACTTATCAATTTGTAGA+TGG | + | chr4.4:18342571-18342590 | MS.gene34997:intron | 25.0% |
| ! | TAGAAAAAAACAAGCAAACT+GGG | + | chr4.4:18342482-18342501 | MS.gene34997:CDS | 25.0% |
| ! | TATAAGCTGGATATCATAAA+GGG | - | chr4.4:18341813-18341832 | None:intergenic | 25.0% |
| ! | TGTCATTCTCATTAAATATG+TGG | + | chr4.4:18341713-18341732 | MS.gene34997:intron | 25.0% |
| ! | TTAGAAAAAAACAAGCAAAC+TGG | + | chr4.4:18342481-18342500 | MS.gene34997:CDS | 25.0% |
| ! | TTTAGTTGGAAATTAAAGCT+AGG | + | chr4.4:18341855-18341874 | MS.gene34997:intron | 25.0% |
| !!! | TCTCTATATAAATTTTGGTG+GGG | + | chr4.4:18341232-18341251 | MS.gene34997:intron | 25.0% |
| !!! | TTCACCCTAAATTTTTCAAA+AGG | + | chr4.4:18342822-18342841 | MS.gene34997:CDS | 25.0% |
| AAAACATGTCTCTTGATCTT+TGG | + | chr4.4:18342852-18342871 | MS.gene34997:intron | 30.0% | |
| AACATACTCTCAAAAGACAA+CGG | + | chr4.4:18343179-18343198 | MS.gene34997:CDS | 30.0% | |
| ACATATAGCAACTAGAAGAA+TGG | - | chr4.4:18341513-18341532 | None:intergenic | 30.0% | |
| ACATTTATGCTCTTCACTAA+TGG | - | chr4.4:18342681-18342700 | None:intergenic | 30.0% | |
| ACTTCTCATTGTTAATGTTG+AGG | - | chr4.4:18343433-18343452 | None:intergenic | 30.0% | |
| AGAATGCAACAAGCTTATTA+TGG | + | chr4.4:18341412-18341431 | MS.gene34997:CDS | 30.0% | |
| AGGAAATTTCTTCTTCAGTT+TGG | - | chr4.4:18341884-18341903 | None:intergenic | 30.0% | |
| ATATCTTGAATTCATCGTAC+TGG | - | chr4.4:18343241-18343260 | None:intergenic | 30.0% | |
| CAATCCACTGACATTAATAT+AGG | - | chr4.4:18342220-18342239 | None:intergenic | 30.0% | |
| CATTTATGCTCTTCACTAAT+GGG | - | chr4.4:18342680-18342699 | None:intergenic | 30.0% | |
| CTATAAGCTGGATATCATAA+AGG | - | chr4.4:18341814-18341833 | None:intergenic | 30.0% | |
| CTTCTCATTGTTAATGTTGA+GGG | - | chr4.4:18343432-18343451 | None:intergenic | 30.0% | |
| GACTTGCATTCAAAAAAAAG+TGG | + | chr4.4:18342076-18342095 | MS.gene34997:CDS | 30.0% | |
| GATTCCTATATTAATGTCAG+TGG | + | chr4.4:18342213-18342232 | MS.gene34997:intron | 30.0% | |
| GGAAATTTCTTCTTCAGTTT+GGG | - | chr4.4:18341883-18341902 | None:intergenic | 30.0% | |
| GTTTCAATTCAACAGATCAT+AGG | - | chr4.4:18341663-18341682 | None:intergenic | 30.0% | |
| TCAAGATATCAAAGATGTTG+CGG | + | chr4.4:18343252-18343271 | MS.gene34997:CDS | 30.0% | |
| TTAAATATGTGGTGACACTT+TGG | + | chr4.4:18341724-18341743 | MS.gene34997:intron | 30.0% | |
| ! | ATGCTCTTATTTGATTCACT+AGG | + | chr4.4:18343079-18343098 | MS.gene34997:intron | 30.0% |
| ! | GAAAAATTTAGGGTGAATGT+GGG | - | chr4.4:18342819-18342838 | None:intergenic | 30.0% |
| ! | TGAAAAATTTAGGGTGAATG+TGG | - | chr4.4:18342820-18342839 | None:intergenic | 30.0% |
| ! | TGCTCTTATTTGATTCACTA+GGG | + | chr4.4:18343080-18343099 | MS.gene34997:intron | 30.0% |
| ! | TTCTTCTAGTTGCTATATGT+TGG | + | chr4.4:18341513-18341532 | MS.gene34997:intron | 30.0% |
| !! | TATATAAATTTTGGTGGGGA+AGG | + | chr4.4:18341236-18341255 | MS.gene34997:intron | 30.0% |
| !! | TCTAGTTCTGGATATAGAAA+AGG | - | chr4.4:18342642-18342661 | None:intergenic | 30.0% |
| AAAGAAGCCAAATTGAGCTT+TGG | - | chr4.4:18341371-18341390 | None:intergenic | 35.0% | |
| AAGGAATGAACGAAGAGTTT+CGG | + | chr4.4:18341255-18341274 | MS.gene34997:intron | 35.0% | |
| ACCATGTTAGGCTTATCATA+AGG | - | chr4.4:18342129-18342148 | None:intergenic | 35.0% | |
| ACCTTATGATAAGCCTAACA+TGG | + | chr4.4:18342125-18342144 | MS.gene34997:CDS | 35.0% | |
| AGATGAGAACACAATTTGTG+TGG | + | chr4.4:18342393-18342412 | MS.gene34997:CDS | 35.0% | |
| AGTGGAATTAAGAGAAGTGA+AGG | + | chr4.4:18342321-18342340 | MS.gene34997:CDS | 35.0% | |
| ATATGAAAGACAAGGTCTTC+AGG | - | chr4.4:18342774-18342793 | None:intergenic | 35.0% | |
| ATGAAGTACATGAAGATCAG+TGG | - | chr4.4:18341483-18341502 | None:intergenic | 35.0% | |
| ATTTGATTCACTAGGGTTAC+CGG | + | chr4.4:18343087-18343106 | MS.gene34997:intron | 35.0% | |
| CAACAAGAACTATGTCGATA+TGG | + | chr4.4:18341442-18341461 | MS.gene34997:CDS | 35.0% | |
| CATAAACAAGACCATACTTG+TGG | - | chr4.4:18342710-18342729 | None:intergenic | 35.0% | |
| CATTAACAATGAGAAGTCCT+TGG | + | chr4.4:18343436-18343455 | MS.gene34997:CDS | 35.0% | |
| CGTTTATTCAATGCTGAGAT+TGG | + | chr4.4:18341991-18342010 | MS.gene34997:CDS | 35.0% | |
| TATTATCAGCTAATTCGCCT+AGG | + | chr4.4:18342972-18342991 | MS.gene34997:CDS | 35.0% | |
| TCATTGTTAATGTTGAGGGA+AGG | - | chr4.4:18343428-18343447 | None:intergenic | 35.0% | |
| TCTATATCCAGAACTAGAGT+GGG | + | chr4.4:18342644-18342663 | MS.gene34997:CDS | 35.0% | |
| TGCTAATCCAAAGCTCAATT+TGG | + | chr4.4:18341361-18341380 | MS.gene34997:CDS | 35.0% | |
| TTCTATATCCAGAACTAGAG+TGG | + | chr4.4:18342643-18342662 | MS.gene34997:CDS | 35.0% | |
| TTGAGAGAAAATGCTACCAT+AGG | - | chr4.4:18343209-18343228 | None:intergenic | 35.0% | |
| ! | ATGGAAGGAAGGTCAATTTT+AGG | - | chr4.4:18342923-18342942 | None:intergenic | 35.0% |
| ! | GTGAAGAGCATAAATGTTAG+TGG | + | chr4.4:18342684-18342703 | MS.gene34997:CDS | 35.0% |
| ! | TATGGTAGCATTTTCTCTCA+AGG | + | chr4.4:18343208-18343227 | MS.gene34997:CDS | 35.0% |
| ! | TATGTTGGGAGAAATTTGCT+AGG | + | chr4.4:18342290-18342309 | MS.gene34997:CDS | 35.0% |
| ! | TTCTTTTGTGACCACATCAA+TGG | + | chr4.4:18341385-18341404 | MS.gene34997:CDS | 35.0% |
| !! | AAGTATGGTCTTGTTTATGC+TGG | + | chr4.4:18342711-18342730 | MS.gene34997:CDS | 35.0% |
| !!! | CATTTTTTATGTCAAGCGCA+AGG | - | chr4.4:18343385-18343404 | None:intergenic | 35.0% |
| AAAAGACAACGGTGTTCCTA+TGG | + | chr4.4:18343190-18343209 | MS.gene34997:CDS | 40.0% | |
| AAGGAACACTTGGAAGAAAC+TGG | + | chr4.4:18343149-18343168 | MS.gene34997:CDS | 40.0% | |
| AATGTTAGTGGCCACAAGTA+TGG | + | chr4.4:18342696-18342715 | MS.gene34997:CDS | 40.0% | |
| ATAAGGTCAGATTCAGAAGC+TGG | - | chr4.4:18341085-18341104 | None:intergenic | 40.0% | |
| ATCTGACTAGAACCTGCAAA+TGG | - | chr4.4:18342942-18342961 | None:intergenic | 40.0% | |
| ATTCATGTTGATGCTGCAAG+TGG | + | chr4.4:18342603-18342622 | MS.gene34997:CDS | 40.0% | |
| ATTTGTGTGGCTGCAATCTT+AGG | + | chr4.4:18342406-18342425 | MS.gene34997:CDS | 40.0% | |
| CAACAAGCGTCAGAAAATCA+TGG | + | chr4.4:18343505-18343524 | MS.gene34997:CDS | 40.0% | |
| CTTGCAGCATCAACATGAAT+AGG | - | chr4.4:18342603-18342622 | None:intergenic | 40.0% | |
| CTTTACCTCTCGTTATGCTA+AGG | + | chr4.4:18341117-18341136 | MS.gene34997:CDS | 40.0% | |
| GAGAGAAGACTACTATGTGA+TGG | + | chr4.4:18342345-18342364 | MS.gene34997:CDS | 40.0% | |
| TGTTTATGCTGGAATTGGCT+GGG | + | chr4.4:18342722-18342741 | MS.gene34997:CDS | 40.0% | |
| TTCTGGTATGCAACTTCCTT+TGG | - | chr4.4:18341317-18341336 | None:intergenic | 40.0% | |
| TTGTTTATGCTGGAATTGGC+TGG | + | chr4.4:18342721-18342740 | MS.gene34997:CDS | 40.0% | |
| ! | AATTTAGGGTGAATGTGGGT+TGG | - | chr4.4:18342815-18342834 | None:intergenic | 40.0% |
| ! | AGAAAATGCAATGGTGCTGA+AGG | + | chr4.4:18343130-18343149 | MS.gene34997:CDS | 40.0% |
| ! | ATTTGCTAGGTACTTCGAAG+TGG | + | chr4.4:18342303-18342322 | MS.gene34997:CDS | 40.0% |
| ! | CATGATTTTCTGACGCTTGT+TGG | - | chr4.4:18343507-18343526 | None:intergenic | 40.0% |
| ! | TTTTGTGACCACATCAATGG+AGG | + | chr4.4:18341388-18341407 | MS.gene34997:CDS | 40.0% |
| !! | GGTCTTGTTTATGCTGGAAT+TGG | + | chr4.4:18342717-18342736 | MS.gene34997:CDS | 40.0% |
| AAAGTGGCAGAACAAACGCA+AGG | + | chr4.4:18342092-18342111 | MS.gene34997:CDS | 45.0% | |
| ACATGAAGATCAGTGGTTGC+TGG | - | chr4.4:18341476-18341495 | None:intergenic | 45.0% | |
| AGAACCTGCAAATGGAAGGA+AGG | - | chr4.4:18342934-18342953 | None:intergenic | 45.0% | |
| AGAGTCCTTAGCATAACGAG+AGG | - | chr4.4:18341125-18341144 | None:intergenic | 45.0% | |
| AGGAACAGTTGGATCATCAG+AGG | + | chr4.4:18342038-18342057 | MS.gene34997:CDS | 45.0% | |
| ATCATCAGAGGCCATAATGC+TGG | + | chr4.4:18342050-18342069 | MS.gene34997:CDS | 45.0% | |
| ATCCAATGCAGTGTCAACCA+AGG | - | chr4.4:18343456-18343475 | None:intergenic | 45.0% | |
| ATCTACCATCTCAACAGCCT+TGG | - | chr4.4:18342377-18342396 | None:intergenic | 45.0% | |
| ATGCTAAGGACTCTCTTCCT+AGG | + | chr4.4:18341131-18341150 | MS.gene34997:CDS | 45.0% | |
| CATACACGATGAGTTGCAGT+TGG | + | chr4.4:18341337-18341356 | MS.gene34997:CDS | 45.0% | |
| CTAGGGTTACCGGAGTATAA+TGG | + | chr4.4:18343097-18343116 | MS.gene34997:intron | 45.0% | |
| GACTAGAACCTGCAAATGGA+AGG | - | chr4.4:18342938-18342957 | None:intergenic | 45.0% | |
| GAGAATGAATACCTGCACGT+TGG | - | chr4.4:18342160-18342179 | None:intergenic | 45.0% | |
| GATAAGCCTAACATGGTCAC+TGG | + | chr4.4:18342132-18342151 | MS.gene34997:CDS | 45.0% | |
| GCAACTCATCGTGTATGTTC+TGG | - | chr4.4:18341334-18341353 | None:intergenic | 45.0% | |
| GCATTCTTCCTCCATTGATG+TGG | - | chr4.4:18341399-18341418 | None:intergenic | 45.0% | |
| GGACTGCAGAGAAAATGCAA+TGG | + | chr4.4:18343121-18343140 | MS.gene34997:CDS | 45.0% | |
| GTCTTCAGGCAAGTCTTCTT+TGG | - | chr4.4:18342760-18342779 | None:intergenic | 45.0% | |
| TGCAGTCCTCCATTATACTC+CGG | - | chr4.4:18343109-18343128 | None:intergenic | 45.0% | |
| TTGACCTTCCTTCCATTTGC+AGG | + | chr4.4:18342927-18342946 | MS.gene34997:intron | 45.0% | |
| ! | AATGGTGCTGAAGGAACACT+TGG | + | chr4.4:18343139-18343158 | MS.gene34997:CDS | 45.0% |
| ! | CTGAAATCCCACTCTAGTTC+TGG | - | chr4.4:18342654-18342673 | None:intergenic | 45.0% |
| ! | GGAGAAAATGAGAGTGCAGT+TGG | + | chr4.4:18342012-18342031 | MS.gene34997:CDS | 45.0% |
| ! | TCAGATTCAGAAGCTGGCTT+TGG | - | chr4.4:18341079-18341098 | None:intergenic | 45.0% |
| ! | TCCTTTGGCATTGAGTTCTC+TGG | - | chr4.4:18341302-18341321 | None:intergenic | 45.0% |
| ACTTTGATGTGGTGAGCACC+AGG | - | chr4.4:18343314-18343333 | None:intergenic | 50.0% | |
| CAGAACAAACGCAAGGCTGA+GGG | + | chr4.4:18342099-18342118 | MS.gene34997:CDS | 50.0% | |
| CATGTTGATGCTGCAAGTGG+TGG | + | chr4.4:18342606-18342625 | MS.gene34997:CDS | 50.0% | |
| CTGGAATTGGCTGGGTGATA+TGG | + | chr4.4:18342730-18342749 | MS.gene34997:CDS | 50.0% | |
| GAATTGGCTGGGTGATATGG+AGG | + | chr4.4:18342733-18342752 | MS.gene34997:CDS | 50.0% | |
| GCCAGAGAACTCAATGCCAA+AGG | + | chr4.4:18341298-18341317 | MS.gene34997:CDS | 50.0% | |
| GCTAATTCGCCTAGGTCAAG+AGG | + | chr4.4:18342980-18342999 | MS.gene34997:CDS | 50.0% | |
| GGGTTACCGGAGTATAATGG+AGG | + | chr4.4:18343100-18343119 | MS.gene34997:intron | 50.0% | |
| GTCCTTGGTTGACACTGCAT+TGG | + | chr4.4:18343451-18343470 | MS.gene34997:CDS | 50.0% | |
| TAGGTCAAGAGGTGAGCCTA+GGG | + | chr4.4:18342991-18343010 | MS.gene34997:intron | 50.0% | |
| TGCAAGTCCTGCCAGCATTA+TGG | - | chr4.4:18342064-18342083 | None:intergenic | 50.0% | |
| ! | AATGAGAGTGCAGTTGGTGC+AGG | + | chr4.4:18342018-18342037 | MS.gene34997:CDS | 50.0% |
| ! | CCACATCAAAGTGCTTCGTG+CGG | + | chr4.4:18343322-18343341 | MS.gene34997:CDS | 50.0% |
| ACCATCTCAACAGCCTTGGC+AGG | - | chr4.4:18342373-18342392 | None:intergenic | 55.0% | |
| ATGCCGGTACAACCCAACCA+TGG | - | chr4.4:18343280-18343299 | None:intergenic | 55.0% | |
| CCATCTCAACAGCCTTGGCA+GGG | - | chr4.4:18342372-18342391 | None:intergenic | 55.0% | |
| CTAGGCTCACCTCTTGACCT+AGG | - | chr4.4:18342992-18343011 | None:intergenic | 55.0% | |
| CTAGGTCAAGAGGTGAGCCT+AGG | + | chr4.4:18342990-18343009 | MS.gene34997:intron | 55.0% | |
| GCAGAACAAACGCAAGGCTG+AGG | + | chr4.4:18342098-18342117 | MS.gene34997:CDS | 55.0% | |
| TCAAAGATGTTGCGGCGCCA+TGG | + | chr4.4:18343260-18343279 | MS.gene34997:CDS | 55.0% | |
| TCAGAGGCCATAATGCTGGC+AGG | + | chr4.4:18342054-18342073 | MS.gene34997:CDS | 55.0% | |
| TTGATGTGGTGAGCACCAGG+TGG | - | chr4.4:18343311-18343330 | None:intergenic | 55.0% | |
| TTGGCGCCAGTGACCATGTT+AGG | - | chr4.4:18342141-18342160 | None:intergenic | 55.0% | |
| ! | CCAGGTGGCATTGGATATGC+CGG | - | chr4.4:18343296-18343315 | None:intergenic | 55.0% |
| ! | CCGCACGAAGCACTTTGATG+TGG | - | chr4.4:18343325-18343344 | None:intergenic | 55.0% |
| ! | GCAGTTGGTGCAGGAACAGT+TGG | + | chr4.4:18342027-18342046 | MS.gene34997:CDS | 55.0% |
| !! | ATGTGGGTTGGTCTGCTCCA+AGG | - | chr4.4:18342803-18342822 | None:intergenic | 55.0% |
| !! | CTATGTGATGGACCCTGCCA+AGG | + | chr4.4:18342357-18342376 | MS.gene34997:CDS | 55.0% |
| AGATGTTGCGGCGCCATGGT+TGG | + | chr4.4:18343264-18343283 | MS.gene34997:CDS | 60.0% | |
| CCCTGCCAAGGCTGTTGAGA+TGG | + | chr4.4:18342369-18342388 | MS.gene34997:CDS | 60.0% | |
| CCGGCATATCCAATGCCACC+TGG | + | chr4.4:18343293-18343312 | MS.gene34997:CDS | 60.0% | |
| GATGTTGCGGCGCCATGGTT+GGG | + | chr4.4:18343265-18343284 | MS.gene34997:CDS | 60.0% | |
| TGGTGAGCACCAGGTGGCAT+TGG | - | chr4.4:18343305-18343324 | None:intergenic | 60.0% | |
| ! | GCGCCATGGTTGGGTTGTAC+CGG | + | chr4.4:18343274-18343293 | MS.gene34997:CDS | 60.0% |
| GGTCACTGGCGCCAACGTGC+AGG | + | chr4.4:18342146-18342165 | MS.gene34997:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18341067 | 18343535 | 18341067 | ID=MS.gene34997 |
| chr4.4 | mRNA | 18341067 | 18343535 | 18341067 | ID=MS.gene34997.t1;Parent=MS.gene34997 |
| chr4.4 | exon | 18341067 | 18341152 | 18341067 | ID=MS.gene34997.t1.exon1;Parent=MS.gene34997.t1 |
| chr4.4 | CDS | 18341067 | 18341152 | 18341067 | ID=cds.MS.gene34997.t1;Parent=MS.gene34997.t1 |
| chr4.4 | exon | 18341289 | 18341493 | 18341289 | ID=MS.gene34997.t1.exon2;Parent=MS.gene34997.t1 |
| chr4.4 | CDS | 18341289 | 18341493 | 18341289 | ID=cds.MS.gene34997.t1;Parent=MS.gene34997.t1 |
| chr4.4 | exon | 18341967 | 18342167 | 18341967 | ID=MS.gene34997.t1.exon3;Parent=MS.gene34997.t1 |
| chr4.4 | CDS | 18341967 | 18342167 | 18341967 | ID=cds.MS.gene34997.t1;Parent=MS.gene34997.t1 |
| chr4.4 | exon | 18342289 | 18342503 | 18342289 | ID=MS.gene34997.t1.exon4;Parent=MS.gene34997.t1 |
| chr4.4 | CDS | 18342289 | 18342503 | 18342289 | ID=cds.MS.gene34997.t1;Parent=MS.gene34997.t1 |
| chr4.4 | exon | 18342590 | 18342843 | 18342590 | ID=MS.gene34997.t1.exon5;Parent=MS.gene34997.t1 |
| chr4.4 | CDS | 18342590 | 18342843 | 18342590 | ID=cds.MS.gene34997.t1;Parent=MS.gene34997.t1 |
| chr4.4 | exon | 18342949 | 18343001 | 18342949 | ID=MS.gene34997.t1.exon6;Parent=MS.gene34997.t1 |
| chr4.4 | CDS | 18342949 | 18343001 | 18342949 | ID=cds.MS.gene34997.t1;Parent=MS.gene34997.t1 |
| chr4.4 | exon | 18343101 | 18343535 | 18343101 | ID=MS.gene34997.t1.exon7;Parent=MS.gene34997.t1 |
| chr4.4 | CDS | 18343101 | 18343535 | 18343101 | ID=cds.MS.gene34997.t1;Parent=MS.gene34997.t1 |
| Gene Sequence |
| Protein sequence |
