Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051410.t1 | CAA77087.1 | 96.6 | 383 | 12 | 1 | 1 | 383 | 38 | 419 | 1.00E-206 | 729.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051410.t1 | P38094 | 29.5 | 410 | 252 | 11 | 4 | 381 | 5 | 409 | 3.3e-41 | 170.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051410.t1 | Q9STA5 | 96.6 | 383 | 12 | 1 | 1 | 383 | 42 | 423 | 7.3e-207 | 729.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene051410 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene058111 | 0.857085 | 2.08E-62 | -1.69E-46 |
| MS.gene051410 | MS.gene058171 | 0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene058173 | 0.804608 | 1.99E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene058175 | 0.808769 | 2.63E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene058493 | 0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene058494 | 0.822337 | 2.50E-53 | -1.69E-46 |
| MS.gene051410 | MS.gene062071 | 0.812071 | 5.10E-51 | -1.69E-46 |
| MS.gene051410 | MS.gene071171 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene071172 | 0.807199 | 5.68E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene071843 | 0.808697 | 2.73E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene072364 | 0.80046 | 1.43E-48 | -1.69E-46 |
| MS.gene051410 | MS.gene072365 | 0.818655 | 1.75E-52 | -1.69E-46 |
| MS.gene051410 | MS.gene072476 | 0.808903 | 2.46E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene21868 | 0.809156 | 2.17E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene21870 | 0.841854 | 3.69E-58 | -1.69E-46 |
| MS.gene051410 | MS.gene22564 | 0.806497 | 7.99E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene27550 | 0.846521 | 2.06E-59 | -1.69E-46 |
| MS.gene051410 | MS.gene27779 | 0.825481 | 4.58E-54 | -1.69E-46 |
| MS.gene051410 | MS.gene27832 | 0.823242 | 1.54E-53 | -1.69E-46 |
| MS.gene051410 | MS.gene27833 | 0.816064 | 6.70E-52 | -1.69E-46 |
| MS.gene051410 | MS.gene29342 | 0.81284 | 3.46E-51 | -1.69E-46 |
| MS.gene051410 | MS.gene34997 | 0.808039 | 3.77E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene38172 | 0.803691 | 3.09E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene39054 | 0.804012 | 2.65E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene40699 | 0.800123 | 1.67E-48 | -1.69E-46 |
| MS.gene051410 | MS.gene41173 | 0.818971 | 1.48E-52 | -1.69E-46 |
| MS.gene051410 | MS.gene46060 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene051410 | MS.gene47049 | 0.816685 | 4.87E-52 | -1.69E-46 |
| MS.gene051410 | MS.gene47421 | 0.88723 | 1.71E-72 | -1.69E-46 |
| MS.gene051410 | MS.gene48822 | 0.802161 | 6.40E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene52062 | 0.822494 | 2.30E-53 | -1.69E-46 |
| MS.gene051410 | MS.gene52469 | 0.810772 | 9.76E-51 | -1.69E-46 |
| MS.gene051410 | MS.gene54303 | 0.803397 | 3.55E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene60721 | 0.805834 | 1.10E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene60722 | 0.803942 | 2.74E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene66360 | 0.839904 | 1.20E-57 | -1.69E-46 |
| MS.gene051410 | MS.gene68181 | 0.812762 | 3.60E-51 | -1.69E-46 |
| MS.gene051410 | MS.gene73753 | 0.812948 | 3.28E-51 | -1.69E-46 |
| MS.gene051410 | MS.gene75048 | 0.840825 | 6.89E-58 | -1.69E-46 |
| MS.gene051410 | MS.gene76722 | 0.807444 | 5.04E-50 | -1.69E-46 |
| MS.gene051410 | MS.gene77048 | 0.817816 | 2.71E-52 | -1.69E-46 |
| MS.gene051410 | MS.gene78593 | 0.820156 | 7.96E-53 | -1.69E-46 |
| MS.gene051410 | MS.gene80092 | 0.819976 | 8.75E-53 | -1.69E-46 |
| MS.gene051410 | MS.gene85298 | 0.820449 | 6.82E-53 | -1.69E-46 |
| MS.gene051410 | MS.gene88886 | 0.800837 | 1.19E-48 | -1.69E-46 |
| MS.gene051410 | MS.gene88887 | 0.803422 | 3.51E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene88888 | 0.80034 | 1.51E-48 | -1.69E-46 |
| MS.gene051410 | MS.gene91418 | 0.826145 | 3.19E-54 | -1.69E-46 |
| MS.gene051410 | MS.gene91775 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene92255 | 0.801607 | 8.31E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene92808 | 0.81778 | 2.76E-52 | -1.69E-46 |
| MS.gene051410 | MS.gene93015 | 0.803874 | 2.83E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene97158 | 0.816169 | 6.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051410.t1 | MTR_1g062710 | 96.606 | 383 | 12 | 1 | 1 | 383 | 42 | 423 | 0.0 | 758 |
| MS.gene051410.t1 | MTR_1g062650 | 69.634 | 382 | 116 | 0 | 1 | 382 | 1 | 382 | 0.0 | 569 |
| MS.gene051410.t1 | MTR_1g062620 | 69.634 | 382 | 116 | 0 | 1 | 382 | 1 | 382 | 0.0 | 566 |
| MS.gene051410.t1 | MTR_1g062620 | 68.675 | 332 | 103 | 1 | 51 | 382 | 4 | 334 | 1.32e-165 | 483 |
| MS.gene051410.t1 | MTR_1g062620 | 68.905 | 283 | 87 | 1 | 100 | 382 | 1 | 282 | 1.67e-138 | 412 |
| MS.gene051410.t1 | MTR_1g062620 | 72.247 | 227 | 62 | 1 | 155 | 381 | 2 | 227 | 7.60e-112 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051410.t1 | AT3G53180 | 59.079 | 391 | 149 | 2 | 1 | 381 | 1 | 390 | 6.90e-162 | 476 |
Find 60 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGGTTTACCTTGATTT+TGG | 0.127703 | 1.1:+47240516 | MS.gene051410:intron |
| GAAGAGTACAGAAGAATTTC+AGG | 0.215372 | 1.1:+47238929 | MS.gene051410:CDS |
| CTACATCTTCTTGCTAAGTT+TGG | 0.245116 | 1.1:+47240088 | MS.gene051410:CDS |
| ATAAGAATCTTACTTCATTT+AGG | 0.295647 | 1.1:-47239114 | None:intergenic |
| CAATACAAAGGTGACTAAAA+AGG | 0.331853 | 1.1:+47239912 | MS.gene051410:CDS |
| TTTCGATGATGGAATACATT+TGG | 0.335785 | 1.1:+47239006 | MS.gene051410:CDS |
| ATGCCATGCACACTAAGTTT+TGG | 0.352841 | 1.1:-47240549 | None:intergenic |
| TTCCCTGAACTCTTCTACTT+AGG | 0.358843 | 1.1:+47241125 | MS.gene051410:CDS |
| GTTTACCAAATGGATCTTCA+TGG | 0.368939 | 1.1:+47239672 | MS.gene051410:CDS |
| CTCAAAGGAAGCATCATATC+TGG | 0.392897 | 1.1:+47240398 | MS.gene051410:CDS |
| TCACCTTTGTATTGATGTCT+AGG | 0.409657 | 1.1:-47239903 | None:intergenic |
| ATACCTAAGTAGAAGAGTTC+AGG | 0.435758 | 1.1:-47241128 | None:intergenic |
| TATGATGCTTCCTTTGAGAA+TGG | 0.444647 | 1.1:-47240393 | None:intergenic |
| ACAATACTCTCTATCCTTCA+AGG | 0.444868 | 1.1:+47238727 | MS.gene051410:CDS |
| GATAATAGCTTTGGTGATAG+AGG | 0.447127 | 1.1:+47240273 | MS.gene051410:intron |
| GGCATGAATCAAAGAAAAGT+TGG | 0.447258 | 1.1:-47238669 | None:intergenic |
| TTTGCAACTTCCACAGCCTC+CGG | 0.450044 | 1.1:-47241472 | None:intergenic |
| AGTCAACCGCAACTAAGTTA+TGG | 0.453520 | 1.1:-47238646 | None:intergenic |
| GTCAACCGCAACTAAGTTAT+GGG | 0.455053 | 1.1:-47238645 | None:intergenic |
| AGCTGAGGAGGGTCTGCAGC+AGG | 0.455514 | 1.1:+47239936 | MS.gene051410:CDS |
| TGACGGCGATCTCACTGTTC+CGG | 0.464854 | 1.1:+47241453 | MS.gene051410:CDS |
| GGTCTGCAGCAGGTGTTAGC+TGG | 0.478354 | 1.1:+47239946 | MS.gene051410:CDS |
| ACAAAATACTTGATACTGAA+TGG | 0.479708 | 1.1:+47239029 | MS.gene051410:CDS |
| TTCCTGAAGGGTTTACCAAA+TGG | 0.483532 | 1.1:+47239662 | MS.gene051410:intron |
| TCTCACTGTTCCGGAGGCTG+TGG | 0.486736 | 1.1:+47241462 | MS.gene051410:CDS |
| GTATGGATGCGAGTCAACTT+TGG | 0.493792 | 1.1:+47238898 | MS.gene051410:CDS |
| AGCATAGCAGCATACTACTT+TGG | 0.496206 | 1.1:+47239880 | MS.gene051410:CDS |
| ACTGTTGCTGATGAAATAGT+TGG | 0.496970 | 1.1:+47239850 | MS.gene051410:CDS |
| ATCACCATGGGCTAGAGAAA+AGG | 0.497107 | 1.1:-47238690 | None:intergenic |
| AGAGTCCATGAAGATCCATT+TGG | 0.498028 | 1.1:-47239677 | None:intergenic |
| AAATGGATCTTCATGGACTC+TGG | 0.501778 | 1.1:+47239679 | MS.gene051410:CDS |
| TACCTAAGTAGAAGAGTTCA+GGG | 0.512127 | 1.1:-47241127 | None:intergenic |
| CTGCGTGATTCATGCATTGA+CGG | 0.522814 | 1.1:+47241436 | MS.gene051410:CDS |
| TTATCTCCACAATGTTCTTG+AGG | 0.525804 | 1.1:+47240323 | MS.gene051410:CDS |
| TACCCTGTGTGTAGTTGCAT+TGG | 0.530303 | 1.1:-47240134 | None:intergenic |
| AGAGATGTAGCTGAGTTGTA+TGG | 0.533489 | 1.1:+47238881 | MS.gene051410:CDS |
| AGAACATTGTGGAGATAAAG+AGG | 0.534266 | 1.1:-47240318 | None:intergenic |
| AAAACTTAGTGTGCATGGCA+TGG | 0.551205 | 1.1:+47240551 | MS.gene051410:CDS |
| ATTCCAAAACTTAGTGTGCA+TGG | 0.555321 | 1.1:+47240546 | MS.gene051410:CDS |
| GAATAGCCAAGCCAAAATCA+AGG | 0.564793 | 1.1:-47240527 | None:intergenic |
| ACAATGTTCTTGAGGACAAG+AGG | 0.566181 | 1.1:+47240331 | MS.gene051410:CDS |
| TCTGGCTTCTCTGTACTCCC+AGG | 0.578459 | 1.1:+47240416 | MS.gene051410:CDS |
| TTCAGGGAATGCATAGGCAT+CGG | 0.581808 | 1.1:-47241111 | None:intergenic |
| AATGCATGAATCACGCAGAA+CGG | 0.585693 | 1.1:-47241431 | None:intergenic |
| GTAGTTGCATTGGCAAGTCA+TGG | 0.597635 | 1.1:-47240124 | None:intergenic |
| GAAGAGTTCAGGGAATGCAT+AGG | 0.598920 | 1.1:-47241117 | None:intergenic |
| TAGTTGCATTGGCAAGTCAT+GGG | 0.599195 | 1.1:-47240123 | None:intergenic |
| TACATCATATCCATTCTCAA+AGG | 0.609323 | 1.1:+47240383 | MS.gene051410:CDS |
| AGAGCAAGCTCCATTAAACA+AGG | 0.610108 | 1.1:+47240596 | MS.gene051410:CDS |
| CGGCGATCTCACTGTTCCGG+AGG | 0.613642 | 1.1:+47241456 | MS.gene051410:CDS |
| TTGAAGCAACAGCATCACCA+TGG | 0.613806 | 1.1:-47238703 | None:intergenic |
| GATTGAGGAGGTAGAACTTG+TGG | 0.621601 | 1.1:+47238613 | MS.gene051410:CDS |
| TTGCCAATGCAACTACACAC+AGG | 0.626223 | 1.1:+47240131 | MS.gene051410:CDS |
| TCATGCCCATAACTTAGTTG+CGG | 0.632976 | 1.1:+47238640 | MS.gene051410:CDS |
| TCTTGTCCTCAAGAACATTG+TGG | 0.638906 | 1.1:-47240329 | None:intergenic |
| TGAAGCAACAGCATCACCAT+GGG | 0.641832 | 1.1:-47238702 | None:intergenic |
| GAGGAGGTAGAACTTGTGGA+TGG | 0.663179 | 1.1:+47238617 | MS.gene051410:CDS |
| TGCCAATGCAACTACACACA+GGG | 0.668406 | 1.1:+47240132 | MS.gene051410:CDS |
| CTCACAAGTCTAGCAACATG+AGG | 0.676804 | 1.1:-47239067 | None:intergenic |
| TGGCCTAGACATCAATACAA+AGG | 0.679374 | 1.1:+47239900 | MS.gene051410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTAGTAAATTTTGAT+TGG | + | chr1.1:47238832-47238851 | MS.gene051410:intron | 10.0% |
| !! | AAGTAATACAACTAAAAATT+TGG | + | chr1.1:47240627-47240646 | MS.gene051410:intron | 15.0% |
| !!! | AATGTTTTGTTATTTCAAAA+TGG | + | chr1.1:47240976-47240995 | MS.gene051410:intron | 15.0% |
| !!! | ATTGATTTTTGATCATATTT+GGG | + | chr1.1:47240183-47240202 | MS.gene051410:intron | 15.0% |
| !!! | TCAATATAGTTTTGAAAATA+AGG | - | chr1.1:47241174-47241193 | None:intergenic | 15.0% |
| !!! | TGGTTTTAATATATGTTTAA+TGG | + | chr1.1:47239987-47240006 | MS.gene051410:intron | 15.0% |
| !! | ATAAGAATCTTACTTCATTT+AGG | - | chr1.1:47239117-47239136 | None:intergenic | 20.0% |
| !! | ATATGATCAAAAATCAATGA+AGG | - | chr1.1:47240181-47240200 | None:intergenic | 20.0% |
| !! | ATGAAGTGACAAAAATATTT+CGG | + | chr1.1:47240663-47240682 | MS.gene051410:intron | 20.0% |
| !! | CTACTTTCAAATATTACAAA+AGG | + | chr1.1:47241205-47241224 | MS.gene051410:intron | 20.0% |
| !! | CTATAATTCTGTACAAAAAT+TGG | - | chr1.1:47239450-47239469 | None:intergenic | 20.0% |
| !! | CTTTCATTATTCAAAGTTAA+AGG | - | chr1.1:47241031-47241050 | None:intergenic | 20.0% |
| !! | TAAATCTGTCACTAAAATTA+GGG | - | chr1.1:47240801-47240820 | None:intergenic | 20.0% |
| !! | TATTAAAATTCTGTTATGTG+TGG | - | chr1.1:47241007-47241026 | None:intergenic | 20.0% |
| !! | TTAAAGTTCAATATTCTAGT+TGG | + | chr1.1:47239808-47239827 | MS.gene051410:intron | 20.0% |
| !!! | AAGTCGTTTAAAATAATGTA+AGG | + | chr1.1:47240935-47240954 | MS.gene051410:intron | 20.0% |
| !!! | ACAATAATTCAATTGATTCA+AGG | - | chr1.1:47241246-47241265 | None:intergenic | 20.0% |
| !!! | ATCATGAAATTTGTTTTAAC+AGG | + | chr1.1:47241379-47241398 | MS.gene051410:intron | 20.0% |
| !!! | CATTGATTTTTGATCATATT+TGG | + | chr1.1:47240182-47240201 | MS.gene051410:intron | 20.0% |
| !!! | TTTTTGAATACCTTGTTTAA+TGG | - | chr1.1:47240609-47240628 | None:intergenic | 20.0% |
| ! | ACAAAATACTTGATACTGAA+TGG | + | chr1.1:47239029-47239048 | MS.gene051410:CDS | 25.0% |
| ! | AGATTAGTATCTTAAGTGAT+AGG | - | chr1.1:47240241-47240260 | None:intergenic | 25.0% |
| ! | ATCTAAATCTATTGCTAACT+TGG | + | chr1.1:47240845-47240864 | MS.gene051410:intron | 25.0% |
| ! | ATGAGTTTCATCCTATAAAA+GGG | + | chr1.1:47239348-47239367 | MS.gene051410:intron | 25.0% |
| ! | CTAAATCTGTCACTAAAATT+AGG | - | chr1.1:47240802-47240821 | None:intergenic | 25.0% |
| ! | GTTTAATGGTATTAAGAGTA+AGG | + | chr1.1:47240001-47240020 | MS.gene051410:intron | 25.0% |
| ! | TATATTTAATGCTTCCTGAA+GGG | + | chr1.1:47239650-47239669 | MS.gene051410:intron | 25.0% |
| ! | TTATATTTAATGCTTCCTGA+AGG | + | chr1.1:47239649-47239668 | MS.gene051410:intron | 25.0% |
| !! | ATATATATGAGTATCGTGTT+TGG | - | chr1.1:47239200-47239219 | None:intergenic | 25.0% |
| !! | CTTTCTATTGATAATAGCTT+TGG | + | chr1.1:47240264-47240283 | MS.gene051410:intron | 25.0% |
| !! | TCTAAAGTAAAGTTTAAGGA+AGG | - | chr1.1:47240911-47240930 | None:intergenic | 25.0% |
| !!! | ATTTGTAGAGTTTTTTACCT+GGG | - | chr1.1:47240436-47240455 | None:intergenic | 25.0% |
| !!! | GAACTCTAAAGTAAAGTTTA+AGG | - | chr1.1:47240915-47240934 | None:intergenic | 25.0% |
| !!! | GTGATATGATTGATTTTTGT+AGG | + | chr1.1:47239469-47239488 | MS.gene051410:intron | 25.0% |
| !!! | TAGAATGTTTTTTACCTTGA+AGG | - | chr1.1:47238744-47238763 | None:intergenic | 25.0% |
| !!! | TTTGATTGGTTATTTTGTGA+TGG | + | chr1.1:47238846-47238865 | MS.gene051410:intron | 25.0% |
| AAACCTGAAGGATAAAGATT+GGG | - | chr1.1:47240506-47240525 | None:intergenic | 30.0% | |
| AACTTTCGCGACAAATTATA+AGG | + | chr1.1:47239505-47239524 | MS.gene051410:intron | 30.0% | |
| AATTTACTTCGATGAAAAGC+CGG | + | chr1.1:47240689-47240708 | MS.gene051410:intron | 30.0% | |
| ATTAGGGAGTAATGATGTAT+AGG | - | chr1.1:47240785-47240804 | None:intergenic | 30.0% | |
| CAATACAAAGGTGACTAAAA+AGG | + | chr1.1:47239912-47239931 | MS.gene051410:CDS | 30.0% | |
| CATGAGTTTCATCCTATAAA+AGG | + | chr1.1:47239347-47239366 | MS.gene051410:intron | 30.0% | |
| GTAGAGAGAGAATATTATGA+AGG | - | chr1.1:47239746-47239765 | None:intergenic | 30.0% | |
| TAAACCTGAAGGATAAAGAT+TGG | - | chr1.1:47240507-47240526 | None:intergenic | 30.0% | |
| TACATCATATCCATTCTCAA+AGG | + | chr1.1:47240383-47240402 | MS.gene051410:CDS | 30.0% | |
| TGAGTTTCATCCTATAAAAG+GGG | + | chr1.1:47239349-47239368 | MS.gene051410:intron | 30.0% | |
| TGTATTGAGAAAAACGATTG+AGG | + | chr1.1:47238598-47238617 | MS.gene051410:CDS | 30.0% | |
| TTAATTACTACTTGCTTGAG+TGG | - | chr1.1:47239537-47239556 | None:intergenic | 30.0% | |
| TTAGCGACTTATTTAGAAAC+CGG | - | chr1.1:47240711-47240730 | None:intergenic | 30.0% | |
| TTATGAGATGAAACACATGT+GGG | + | chr1.1:47239282-47239301 | MS.gene051410:intron | 30.0% | |
| TTGTTCGTAACACTCATTAT+CGG | - | chr1.1:47239230-47239249 | None:intergenic | 30.0% | |
| ! | TCTACTGTAATTTTCGATGA+TGG | + | chr1.1:47238995-47239014 | MS.gene051410:CDS | 30.0% |
| !! | CATTTAGGATATTTTCAGCT+AGG | - | chr1.1:47239102-47239121 | None:intergenic | 30.0% |
| !! | TTTCGATGATGGAATACATT+TGG | + | chr1.1:47239006-47239025 | MS.gene051410:CDS | 30.0% |
| !!! | GATTTGTAGAGTTTTTTACC+TGG | - | chr1.1:47240437-47240456 | None:intergenic | 30.0% |
| AAAGAAAACTTTGTTCCAGC+AGG | - | chr1.1:47238781-47238800 | None:intergenic | 35.0% | |
| AACCTGTCACAAACTCATTT+AGG | - | chr1.1:47240741-47240760 | None:intergenic | 35.0% | |
| AAGAAAACTTTGTTCCAGCA+GGG | - | chr1.1:47238780-47238799 | None:intergenic | 35.0% | |
| AAGAGTAAACTTTGCATTGC+AGG | + | chr1.1:47241076-47241095 | MS.gene051410:intron | 35.0% | |
| ACAATACTCTCTATCCTTCA+AGG | + | chr1.1:47238727-47238746 | MS.gene051410:CDS | 35.0% | |
| ACCTGTCACAAACTCATTTA+GGG | - | chr1.1:47240740-47240759 | None:intergenic | 35.0% | |
| ACTGTTGCTGATGAAATAGT+TGG | + | chr1.1:47239850-47239869 | MS.gene051410:CDS | 35.0% | |
| AGAACATTGTGGAGATAAAG+AGG | - | chr1.1:47240321-47240340 | None:intergenic | 35.0% | |
| ATACCTAAGTAGAAGAGTTC+AGG | - | chr1.1:47241131-47241150 | None:intergenic | 35.0% | |
| ATATTTCCTTGCAAGTTAGC+TGG | - | chr1.1:47238818-47238837 | None:intergenic | 35.0% | |
| ATTCCAAAACTTAGTGTGCA+TGG | + | chr1.1:47240546-47240565 | MS.gene051410:CDS | 35.0% | |
| ATTGAGAAAAACGATTGAGG+AGG | + | chr1.1:47238601-47238620 | MS.gene051410:CDS | 35.0% | |
| CAAAATCAAGGTAAACCTGA+AGG | - | chr1.1:47240518-47240537 | None:intergenic | 35.0% | |
| CTACATCTTCTTGCTAAGTT+TGG | + | chr1.1:47240088-47240107 | MS.gene051410:CDS | 35.0% | |
| GGCATGAATCAAAGAAAAGT+TGG | - | chr1.1:47238672-47238691 | None:intergenic | 35.0% | |
| GGTGAGTAGAGAATGAAAAT+TGG | + | chr1.1:47239967-47239986 | MS.gene051410:intron | 35.0% | |
| GTTATGAGATGAAACACATG+TGG | + | chr1.1:47239281-47239300 | MS.gene051410:intron | 35.0% | |
| GTTTACCAAATGGATCTTCA+TGG | + | chr1.1:47239672-47239691 | MS.gene051410:CDS | 35.0% | |
| TAACCCAATCTTTATCCTTC+AGG | + | chr1.1:47240500-47240519 | MS.gene051410:intron | 35.0% | |
| TACCTAAGTAGAAGAGTTCA+GGG | - | chr1.1:47241130-47241149 | None:intergenic | 35.0% | |
| TCGCGAAAGTTGTCTAAATT+TGG | - | chr1.1:47239496-47239515 | None:intergenic | 35.0% | |
| TGAAGGATATGATTCCAACT+TGG | - | chr1.1:47239729-47239748 | None:intergenic | 35.0% | |
| TTATCTCCACAATGTTCTTG+AGG | + | chr1.1:47240323-47240342 | MS.gene051410:CDS | 35.0% | |
| ! | GAAGAGTACAGAAGAATTTC+AGG | + | chr1.1:47238929-47238948 | MS.gene051410:CDS | 35.0% |
| ! | TAAAGCATTTCTCTCCAAGT+TGG | + | chr1.1:47239712-47239731 | MS.gene051410:intron | 35.0% |
| ! | TATGATGCTTCCTTTGAGAA+TGG | - | chr1.1:47240396-47240415 | None:intergenic | 35.0% |
| ! | TCACCTTTGTATTGATGTCT+AGG | - | chr1.1:47239906-47239925 | None:intergenic | 35.0% |
| !! | ATATCTATGAAGCATCGACA+TGG | + | chr1.1:47239171-47239190 | MS.gene051410:intron | 35.0% |
| !! | CTTCAGGTTTACCTTGATTT+TGG | + | chr1.1:47240516-47240535 | MS.gene051410:intron | 35.0% |
| !! | GATAATAGCTTTGGTGATAG+AGG | + | chr1.1:47240273-47240292 | MS.gene051410:intron | 35.0% |
| !! | GTTGGTAGCAAACAAAAATC+TGG | + | chr1.1:47240061-47240080 | MS.gene051410:CDS | 35.0% |
| !! | TTTTTGTTTGCTACCAACAC+AGG | - | chr1.1:47240059-47240078 | None:intergenic | 35.0% |
| !!! | ATGCTTTTTTAAATCCCTGC+TGG | + | chr1.1:47238763-47238782 | MS.gene051410:intron | 35.0% |
| AAAACTTAGTGTGCATGGCA+TGG | + | chr1.1:47240551-47240570 | MS.gene051410:CDS | 40.0% | |
| AAAGTAGATCCCGCATAAAG+TGG | + | chr1.1:47239317-47239336 | MS.gene051410:intron | 40.0% | |
| AAATGGATCTTCATGGACTC+TGG | + | chr1.1:47239679-47239698 | MS.gene051410:CDS | 40.0% | |
| AATGCATGAATCACGCAGAA+CGG | - | chr1.1:47241434-47241453 | None:intergenic | 40.0% | |
| ACAATGTTCTTGAGGACAAG+AGG | + | chr1.1:47240331-47240350 | MS.gene051410:CDS | 40.0% | |
| ACTAAAAAGGAAGCTGAGGA+GGG | + | chr1.1:47239925-47239944 | MS.gene051410:CDS | 40.0% | |
| ACTAAAGAGCAGCACTATAG+TGG | - | chr1.1:47240217-47240236 | None:intergenic | 40.0% | |
| AGAGATGTAGCTGAGTTGTA+TGG | + | chr1.1:47238881-47238900 | MS.gene051410:CDS | 40.0% | |
| AGAGCAAGCTCCATTAAACA+AGG | + | chr1.1:47240596-47240615 | MS.gene051410:CDS | 40.0% | |
| AGAGTCCATGAAGATCCATT+TGG | - | chr1.1:47239680-47239699 | None:intergenic | 40.0% | |
| AGCATAGCAGCATACTACTT+TGG | + | chr1.1:47239880-47239899 | MS.gene051410:CDS | 40.0% | |
| AGTCAACCGCAACTAAGTTA+TGG | - | chr1.1:47238649-47238668 | None:intergenic | 40.0% | |
| ATCCATTTGGTAAACCCTTC+AGG | - | chr1.1:47239667-47239686 | None:intergenic | 40.0% | |
| ATGAGTCTCACCACTTTATG+CGG | - | chr1.1:47239330-47239349 | None:intergenic | 40.0% | |
| CAACAGTAACAGTCATGCTA+AGG | - | chr1.1:47239837-47239856 | None:intergenic | 40.0% | |
| GAATAGCCAAGCCAAAATCA+AGG | - | chr1.1:47240530-47240549 | None:intergenic | 40.0% | |
| GTCAACCGCAACTAAGTTAT+GGG | - | chr1.1:47238648-47238667 | None:intergenic | 40.0% | |
| GTTTCATCCTATAAAAGGGG+CGG | + | chr1.1:47239352-47239371 | MS.gene051410:intron | 40.0% | |
| TCATGCCCATAACTTAGTTG+CGG | + | chr1.1:47238640-47238659 | MS.gene051410:CDS | 40.0% | |
| TCCCTAAATGAGTTTGTGAC+AGG | + | chr1.1:47240736-47240755 | MS.gene051410:intron | 40.0% | |
| TCTTGTCCTCAAGAACATTG+TGG | - | chr1.1:47240332-47240351 | None:intergenic | 40.0% | |
| TGGCCTAGACATCAATACAA+AGG | + | chr1.1:47239900-47239919 | MS.gene051410:CDS | 40.0% | |
| TTCCCTGAACTCTTCTACTT+AGG | + | chr1.1:47241125-47241144 | MS.gene051410:CDS | 40.0% | |
| TTCCTGAAGGGTTTACCAAA+TGG | + | chr1.1:47239662-47239681 | MS.gene051410:intron | 40.0% | |
| ! | ATGCCATGCACACTAAGTTT+TGG | - | chr1.1:47240552-47240571 | None:intergenic | 40.0% |
| ! | TAGTTGCATTGGCAAGTCAT+GGG | - | chr1.1:47240126-47240145 | None:intergenic | 40.0% |
| ! | TCAATACCAGCTAACTTGCA+AGG | + | chr1.1:47238809-47238828 | MS.gene051410:intron | 40.0% |
| !! | CTCAAAGGAAGCATCATATC+TGG | + | chr1.1:47240398-47240417 | MS.gene051410:CDS | 40.0% |
| !! | TTCAGTTTTCAAGCCTGTGT+TGG | + | chr1.1:47240043-47240062 | MS.gene051410:intron | 40.0% |
| !!! | GGTTTACCTTGATTTTGGCT+TGG | + | chr1.1:47240521-47240540 | MS.gene051410:intron | 40.0% |
| AAAAGGGGCGGTAGAACTAA+CGG | + | chr1.1:47239364-47239383 | MS.gene051410:intron | 45.0% | |
| CTCACAAGTCTAGCAACATG+AGG | - | chr1.1:47239070-47239089 | None:intergenic | 45.0% | |
| CTGCGTGATTCATGCATTGA+CGG | + | chr1.1:47241436-47241455 | MS.gene051410:CDS | 45.0% | |
| GAAGAGTTCAGGGAATGCAT+AGG | - | chr1.1:47241120-47241139 | None:intergenic | 45.0% | |
| GACTAAAAAGGAAGCTGAGG+AGG | + | chr1.1:47239924-47239943 | MS.gene051410:CDS | 45.0% | |
| GATTGAGGAGGTAGAACTTG+TGG | + | chr1.1:47238613-47238632 | MS.gene051410:CDS | 45.0% | |
| GGTGACTAAAAAGGAAGCTG+AGG | + | chr1.1:47239921-47239940 | MS.gene051410:CDS | 45.0% | |
| GTATGGATGCGAGTCAACTT+TGG | + | chr1.1:47238898-47238917 | MS.gene051410:CDS | 45.0% | |
| TACCCTGTGTGTAGTTGCAT+TGG | - | chr1.1:47240137-47240156 | None:intergenic | 45.0% | |
| TGAAGCAACAGCATCACCAT+GGG | - | chr1.1:47238705-47238724 | None:intergenic | 45.0% | |
| TGAGTCTCACCACTTTATGC+GGG | - | chr1.1:47239329-47239348 | None:intergenic | 45.0% | |
| TGCAACTACACACAGGGTAA+TGG | + | chr1.1:47240138-47240157 | MS.gene051410:intron | 45.0% | |
| TGCCAATGCAACTACACACA+GGG | + | chr1.1:47240132-47240151 | MS.gene051410:CDS | 45.0% | |
| TTCAGGGAATGCATAGGCAT+CGG | - | chr1.1:47241114-47241133 | None:intergenic | 45.0% | |
| TTGAAGCAACAGCATCACCA+TGG | - | chr1.1:47238706-47238725 | None:intergenic | 45.0% | |
| TTGCCAATGCAACTACACAC+AGG | + | chr1.1:47240131-47240150 | MS.gene051410:CDS | 45.0% | |
| ! | AGTTCTACCGCCCCTTTTAT+AGG | - | chr1.1:47239362-47239381 | None:intergenic | 45.0% |
| ! | GTAGTTGCATTGGCAAGTCA+TGG | - | chr1.1:47240127-47240146 | None:intergenic | 45.0% |
| !! | ATCACCATGGGCTAGAGAAA+AGG | - | chr1.1:47238693-47238712 | None:intergenic | 45.0% |
| AAAGGGGCGGTAGAACTAAC+GGG | + | chr1.1:47239365-47239384 | MS.gene051410:intron | 50.0% | |
| GAGGAGGTAGAACTTGTGGA+TGG | + | chr1.1:47238617-47238636 | MS.gene051410:CDS | 50.0% | |
| TTTGCAACTTCCACAGCCTC+CGG | - | chr1.1:47241475-47241494 | None:intergenic | 50.0% | |
| ! | CATGCCTTTTCTCTAGCCCA+TGG | + | chr1.1:47238686-47238705 | MS.gene051410:CDS | 50.0% |
| GGCGGTAGAACTAACGGGAT+TGG | + | chr1.1:47239370-47239389 | MS.gene051410:intron | 55.0% | |
| TGACGGCGATCTCACTGTTC+CGG | + | chr1.1:47241453-47241472 | MS.gene051410:CDS | 55.0% | |
| ! | TCTGGCTTCTCTGTACTCCC+AGG | + | chr1.1:47240416-47240435 | MS.gene051410:CDS | 55.0% |
| GGTCTGCAGCAGGTGTTAGC+TGG | + | chr1.1:47239946-47239965 | MS.gene051410:CDS | 60.0% | |
| TCTCACTGTTCCGGAGGCTG+TGG | + | chr1.1:47241462-47241481 | MS.gene051410:CDS | 60.0% | |
| AGCTGAGGAGGGTCTGCAGC+AGG | + | chr1.1:47239936-47239955 | MS.gene051410:CDS | 65.0% | |
| CGGCGATCTCACTGTTCCGG+AGG | + | chr1.1:47241456-47241475 | MS.gene051410:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 47238587 | 47241543 | 47238587 | ID=MS.gene051410 |
| chr1.1 | mRNA | 47238587 | 47241543 | 47238587 | ID=MS.gene051410.t1;Parent=MS.gene051410 |
| chr1.1 | exon | 47238587 | 47238748 | 47238587 | ID=MS.gene051410.t1.exon1;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47238587 | 47238748 | 47238587 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| chr1.1 | exon | 47238872 | 47239123 | 47238872 | ID=MS.gene051410.t1.exon2;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47238872 | 47239123 | 47238872 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| chr1.1 | exon | 47239671 | 47239729 | 47239671 | ID=MS.gene051410.t1.exon3;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47239671 | 47239729 | 47239671 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| chr1.1 | exon | 47239840 | 47239967 | 47239840 | ID=MS.gene051410.t1.exon4;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47239840 | 47239967 | 47239840 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| chr1.1 | exon | 47240048 | 47240153 | 47240048 | ID=MS.gene051410.t1.exon5;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47240048 | 47240153 | 47240048 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| chr1.1 | exon | 47240281 | 47240437 | 47240281 | ID=MS.gene051410.t1.exon6;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47240281 | 47240437 | 47240281 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| chr1.1 | exon | 47240522 | 47240617 | 47240522 | ID=MS.gene051410.t1.exon7;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47240522 | 47240617 | 47240522 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| chr1.1 | exon | 47241098 | 47241146 | 47241098 | ID=MS.gene051410.t1.exon8;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47241098 | 47241146 | 47241098 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| chr1.1 | exon | 47241401 | 47241543 | 47241401 | ID=MS.gene051410.t1.exon9;Parent=MS.gene051410.t1 |
| chr1.1 | CDS | 47241401 | 47241543 | 47241401 | ID=cds.MS.gene051410.t1;Parent=MS.gene051410.t1 |
| Gene Sequence |
| Protein sequence |
