AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35079


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35079.t1 MTR_4g094405 98.851 609 4 1 1 606 16 624 0.0 1246
MS.gene35079.t1 MTR_3g090170 23.792 559 350 21 21 558 22 525 4.48e-22 100
MS.gene35079.t1 MTR_4g023610 23.733 434 284 15 16 426 40 449 1.13e-21 99.8
MS.gene35079.t1 MTR_3g090170 25.059 423 266 14 21 425 22 411 1.73e-19 92.0
MS.gene35079.t1 MTR_4g102120 22.807 399 272 11 4 383 29 410 1.80e-18 89.7
MS.gene35079.t1 MTR_8g052140 92.308 39 3 0 31 69 35 73 1.42e-17 78.2
MS.gene35079.t1 MTR_5g011790 21.262 428 300 13 4 412 29 438 9.75e-17 84.3
MS.gene35079.t1 MTR_5g011790 21.262 428 300 13 4 412 29 438 1.52e-16 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35079.t1 AT2G17980 77.409 602 130 4 1 598 16 615 0.0 975
MS.gene35079.t1 AT4G31740 64.948 194 44 2 404 597 1 170 3.42e-76 240
MS.gene35079.t1 AT4G36100 65.185 135 40 3 369 502 107 235 9.36e-45 159
MS.gene35079.t1 AT4G12120 24.318 403 258 14 19 397 42 421 4.82e-21 97.8
MS.gene35079.t1 AT1G02010 22.454 432 296 15 10 426 3 410 1.01e-19 94.0
MS.gene35079.t1 AT1G12360 21.411 397 279 9 4 383 27 407 1.13e-19 93.6
MS.gene35079.t1 AT1G02010 22.350 434 298 15 8 426 33 442 1.30e-19 93.6
MS.gene35079.t1 AT1G02010 22.350 434 298 15 8 426 33 442 1.35e-19 93.6
MS.gene35079.t1 AT1G02010 22.350 434 298 15 8 426 33 442 1.45e-19 93.2
MS.gene35079.t1 AT1G77140 21.635 587 388 20 21 588 22 555 4.23e-19 91.7
MS.gene35079.t1 AT1G02010 21.505 465 294 17 8 426 33 472 4.82e-16 82.4

Find 151 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACAATTGCTTCCTTAAA+TGG 0.132005 4.4:-20199127 None:intergenic
CTCCACTTCAGTTGGATTAA+TGG 0.163713 4.4:-20198771 None:intergenic
GTTGTTGTTGTTCCTGTTAT+TGG 0.231973 4.4:-20197534 None:intergenic
CCATTTGAAAGGTCCATTTA+AGG 0.236204 4.4:+20199114 MS.gene35079:CDS
GAGAATGACATGATGGTTAG+AGG 0.262303 4.4:+20198650 MS.gene35079:CDS
AGATCTTTGACATGAATTAA+TGG 0.270069 4.4:-20197618 None:intergenic
TGGATAGTGCTGATTCGTTT+TGG 0.273156 4.4:+20198342 MS.gene35079:CDS
TGTCGAGCAGCTTACGTTGC+TGG 0.298656 4.4:+20199267 MS.gene35079:CDS
CCTCCCAAGCATATTATATA+TGG 0.307162 4.4:+20199214 MS.gene35079:CDS
ATGCTTGAAGATCTTGCTTC+GGG 0.309638 4.4:+20197822 MS.gene35079:CDS
TTGCTATTCAGCATGACTTT+AGG 0.325340 4.4:+20198231 MS.gene35079:CDS
CTGCGTTGGATCAAAGGATT+AGG 0.326789 4.4:+20198102 MS.gene35079:CDS
TTGGTGTTGTGCCGGTTATT+AGG 0.342813 4.4:+20198045 MS.gene35079:CDS
ATTGTTGAGAGGATTGTTAA+TGG 0.346750 4.4:+20197999 MS.gene35079:CDS
CGCTGAACGTTGGATTGAAT+TGG 0.351150 4.4:-20197726 None:intergenic
TACATATCTGTCTCAGGATT+TGG 0.351181 4.4:-20199040 None:intergenic
AATAATTTGTTTACTGAAGG+TGG 0.354251 4.4:+20198143 MS.gene35079:CDS
CTGGGGAAGAAGATGGGTTT+GGG 0.358245 4.4:+20199286 MS.gene35079:CDS
GATCCCCGTGCTCCTAAGTC+TGG 0.372753 4.4:+20199073 MS.gene35079:CDS
GATGCTTGAAGATCTTGCTT+CGG 0.373839 4.4:+20197821 MS.gene35079:CDS
GTCGAGCAGCTTACGTTGCT+GGG 0.381605 4.4:+20199268 MS.gene35079:CDS
TTCCTGTTATTGGTTGGTTT+AGG 0.389171 4.4:-20197524 None:intergenic
AACCTAAACCAACCAATAAC+AGG 0.402200 4.4:+20197522 MS.gene35079:CDS
TAGGTGTCCGCGTGGTGGGC+CGG 0.402954 4.4:+20198064 MS.gene35079:CDS
GACAGAATTTGTCGTAGATA+AGG 0.409373 4.4:-20197581 None:intergenic
AAGATGGGTTTGGGTAATGT+TGG 0.413058 4.4:+20199295 MS.gene35079:CDS
AACATTGCTACTGTGTTGTT+GGG 0.414573 4.4:+20198587 MS.gene35079:CDS
GACTGGGCCGAGAAGCTCTA+TGG 0.415523 4.4:+20198917 MS.gene35079:CDS
TAACATTGCTACTGTGTTGT+TGG 0.421174 4.4:+20198586 MS.gene35079:CDS
TGCTTCGGGGACCATAGCTT+CGG 0.422216 4.4:+20197836 MS.gene35079:CDS
TTGTTGAGAGGATTGTTAAT+GGG 0.426907 4.4:+20198000 MS.gene35079:CDS
CGTGCTCCTAAGTCTGGTTC+AGG 0.428583 4.4:+20199079 MS.gene35079:CDS
TTGAATAGGTTGAGTGTTCA+AGG 0.432954 4.4:+20198290 MS.gene35079:CDS
CGTTGGTTCATGATGTGCTT+GGG 0.434927 4.4:+20198261 MS.gene35079:CDS
ATTTGGTCTCCCTTCAATCA+AGG 0.437182 4.4:-20199023 None:intergenic
GCTGGGGAAGAAGATGGGTT+TGG 0.441069 4.4:+20199285 MS.gene35079:CDS
CCTTAAATGGACCTTTCAAA+TGG 0.441471 4.4:-20199114 None:intergenic
CTGTTGAAGCCTTGATTGAA+GGG 0.444683 4.4:+20199014 MS.gene35079:CDS
TGACTGTCCATAGAGCTTCT+CGG 0.445565 4.4:-20198924 None:intergenic
TTTGATGGGACGGATTTGAT+TGG 0.447772 4.4:+20198485 MS.gene35079:CDS
TACGTTGCTGGGGAAGAAGA+TGG 0.450478 4.4:+20199279 MS.gene35079:CDS
TTGAGTGTTCAAGGGGAGAA+AGG 0.451443 4.4:+20198299 MS.gene35079:CDS
CCACGCGGACACCTAATAAC+CGG 0.453146 4.4:-20198056 None:intergenic
TGTTAGTTCGTTTCAGAGGC+CGG 0.458725 4.4:+20198172 MS.gene35079:CDS
ACTGTTGAAGCCTTGATTGA+AGG 0.458983 4.4:+20199013 MS.gene35079:CDS
TGCTTGGGTTGAAGTTGAAT+AGG 0.461236 4.4:+20198276 MS.gene35079:CDS
GCGTGGTGGGCCGGCTGAGA+TGG 0.467664 4.4:+20198073 MS.gene35079:CDS
ATAATTTGTTTACTGAAGGT+GGG 0.468429 4.4:+20198144 MS.gene35079:CDS
GCAGAAGTAATATTGTTGAC+TGG 0.470359 4.4:+20198900 MS.gene35079:CDS
TCAATCTCCACCGCAACCTC+AGG 0.475104 4.4:-20198389 None:intergenic
AATCACGGTGCGGAGTTTGA+TGG 0.479706 4.4:+20198470 MS.gene35079:CDS
CGTTCCATATATAATATGCT+TGG 0.482424 4.4:-20199218 None:intergenic
TCCACAGCCTCCACTTCAGT+TGG 0.483693 4.4:-20198779 None:intergenic
CAACAATCTCCTCAATTTCA+CGG 0.487353 4.4:-20197983 None:intergenic
TAAGTCTCTGAATGTTTCGT+TGG 0.487831 4.4:+20198859 MS.gene35079:CDS
TTCAGCATGACTTTAGGTAT+AGG 0.488901 4.4:+20198237 MS.gene35079:CDS
TTATTAGGTGTCCGCGTGGT+GGG 0.489264 4.4:+20198060 MS.gene35079:CDS
AACTTCTCGGTGTGCTGAGA+GGG 0.491058 4.4:+20198690 MS.gene35079:CDS
CCGTTGGTTCATGATGTGCT+TGG 0.493871 4.4:+20198260 MS.gene35079:CDS
GCCAGGTACATATCTGTCTC+AGG 0.495844 4.4:-20199046 None:intergenic
GTTCCATATATAATATGCTT+GGG 0.496796 4.4:-20199217 None:intergenic
TTGCTACTGCGTTGGATCAA+AGG 0.498571 4.4:+20198096 MS.gene35079:CDS
AATCTTAATGATCCGTCTGC+TGG 0.498721 4.4:+20197957 MS.gene35079:CDS
TGCTTCCTCTCAGTCAGCTC+AGG 0.499034 4.4:-20198545 None:intergenic
ACGGCGGGAACATCGTGAAC+GGG 0.500575 4.4:-20197690 None:intergenic
GTTGGAGTTTCCTGAGGTTG+CGG 0.502834 4.4:+20198379 MS.gene35079:CDS
GAGAGGGAAGGGAACGAAGA+TGG 0.504205 4.4:+20198706 MS.gene35079:CDS
ATTGAAAGGAGTGAACTTCT+CGG 0.505612 4.4:+20198677 MS.gene35079:CDS
AAGTCATGCTGAATAGCAAC+CGG 0.507005 4.4:-20198227 None:intergenic
ATCACGGTGCGGAGTTTGAT+GGG 0.508088 4.4:+20198471 MS.gene35079:CDS
CTCGGTGTGCTGAGAGGGAA+GGG 0.508637 4.4:+20198695 MS.gene35079:CDS
AATTGGTTGAACGAAATAAA+CGG 0.509297 4.4:-20197709 None:intergenic
TGCGATGATTCGCTGAACGT+TGG 0.509719 4.4:-20197736 None:intergenic
CTTGCTCCTGAACCAGACTT+AGG 0.509749 4.4:-20199085 None:intergenic
TCCAACTGAAGTGGAGGCTG+TGG 0.512353 4.4:+20198778 MS.gene35079:CDS
CAGAAGTAATATTGTTGACT+GGG 0.512458 4.4:+20198901 MS.gene35079:CDS
TGAAGTGGAGGCTGTGGAAA+CGG 0.514245 4.4:+20198784 MS.gene35079:CDS
TGCGTTGGATCAAAGGATTA+GGG 0.520281 4.4:+20198103 MS.gene35079:CDS
GTGTTCAAGGGGAGAAAGGT+GGG 0.520944 4.4:+20198303 MS.gene35079:CDS
TTCGATTCAGCGAATTTCAA+AGG 0.521180 4.4:+20197860 MS.gene35079:CDS
TTGGGTTGCAAATGGTGGGT+TGG 0.524353 4.4:+20198361 MS.gene35079:CDS
AGTGTTCAAGGGGAGAAAGG+TGG 0.524971 4.4:+20198302 MS.gene35079:CDS
TTGTTGTTCCTGTTATTGGT+TGG 0.526111 4.4:-20197530 None:intergenic
ACGTTGCTGGGGAAGAAGAT+GGG 0.527243 4.4:+20199280 MS.gene35079:CDS
GGCTACGCTTGGTGTTGTGC+CGG 0.528957 4.4:+20198037 MS.gene35079:CDS
CATCATGTATCTGATTTCAT+CGG 0.529783 4.4:+20198745 MS.gene35079:CDS
TGAATAGGTTGAGTGTTCAA+GGG 0.531169 4.4:+20198291 MS.gene35079:CDS
CACATCTGAACTACTGAGGT+GGG 0.531717 4.4:-20199324 None:intergenic
TGGTTAGAGGGAGCATTGAA+AGG 0.532998 4.4:+20198663 MS.gene35079:CDS
GAGCACGGGGATCAAAAGCC+AGG 0.535204 4.4:-20199063 None:intergenic
TAGTGACAGACAGCTAGCTT+TGG 0.538193 4.4:+20198985 MS.gene35079:CDS
TGACTTTAGGTATAGGCCGT+TGG 0.538298 4.4:+20198244 MS.gene35079:CDS
TCTTGAGTTTGTTACACTTG+AGG 0.539068 4.4:+20197896 MS.gene35079:CDS
TGGGATGAGATCTTATGAGT+TGG 0.539391 4.4:+20198322 MS.gene35079:CDS
GCTTGATTCATATGCTAAGA+AGG 0.541789 4.4:+20198628 MS.gene35079:CDS
CGATGAAATCAGATACATGA+TGG 0.547327 4.4:-20198744 None:intergenic
TGTGTTGTTGGGTGAGATCA+AGG 0.549244 4.4:+20198598 MS.gene35079:CDS
TGAACCAGACTTAGGAGCAC+GGG 0.551638 4.4:-20199077 None:intergenic
CTGAATCGAATCCGAAGCTA+TGG 0.553466 4.4:-20197847 None:intergenic
GCAGTAGCAACCATCTCAGC+CGG 0.555050 4.4:-20198083 None:intergenic
CGGTGCGGAGTTTGATGGGA+CGG 0.555506 4.4:+20198475 MS.gene35079:CDS
GTTATTAGGTGTCCGCGTGG+TGG 0.559238 4.4:+20198059 MS.gene35079:CDS
TCTCGGTGTGCTGAGAGGGA+AGG 0.564630 4.4:+20198694 MS.gene35079:CDS
AACCATTAATCCAACTGAAG+TGG 0.570290 4.4:+20198769 MS.gene35079:CDS
GATGAGGTCAATAAGAGGAC+TGG 0.574212 4.4:+20198443 MS.gene35079:CDS
GAATAGGTTGAGTGTTCAAG+GGG 0.576422 4.4:+20198292 MS.gene35079:CDS
TGCTGGTGACCGTGAAATTG+AGG 0.576895 4.4:+20197974 MS.gene35079:CDS
AACGGCGGGAACATCGTGAA+CGG 0.577620 4.4:-20197691 None:intergenic
AAGAGGACTGGAGGGAATCA+CGG 0.579431 4.4:+20198455 MS.gene35079:CDS
ATGTTGATGAGGTCAATAAG+AGG 0.580113 4.4:+20198438 MS.gene35079:CDS
AGAATGACATGATGGTTAGA+GGG 0.586500 4.4:+20198651 MS.gene35079:CDS
TCACATCTGAACTACTGAGG+TGG 0.588791 4.4:-20199325 None:intergenic
GAAGCAAGATCTTCAAGCAT+CGG 0.589526 4.4:-20197819 None:intergenic
TCGATGTTGAGAAATTGAGA+TGG 0.590144 4.4:-20197788 None:intergenic
TGAGATGGTTGCTACTGCGT+TGG 0.590363 4.4:+20198088 MS.gene35079:CDS
GAGGTCAATAAGAGGACTGG+AGG 0.591483 4.4:+20198446 MS.gene35079:CDS
AGATCTTCAAGCATCGGACG+AGG 0.598135 4.4:-20197813 None:intergenic
TCAATAAGTGCAGTGACTGC+TGG 0.598945 4.4:+20198944 MS.gene35079:CDS
GCAAGTGGCAACCATTTGAA+AGG 0.599069 4.4:+20199103 MS.gene35079:CDS
GGTTGAACGAAATAAACGGC+GGG 0.599421 4.4:-20197705 None:intergenic
TCCTGAGACAGATATGTACC+TGG 0.603561 4.4:+20199045 MS.gene35079:CDS
TAAGAAGGAGAATGACATGA+TGG 0.614444 4.4:+20198643 MS.gene35079:CDS
TGGTGGGTTGGAGTTTCCTG+AGG 0.614604 4.4:+20198373 MS.gene35079:CDS
CATTAATCCAACTGAAGTGG+AGG 0.617261 4.4:+20198772 MS.gene35079:CDS
GGAGTTTCCTGAGGTTGCGG+TGG 0.617381 4.4:+20198382 MS.gene35079:CDS
TGCTTGAAGATCTTGCTTCG+GGG 0.618864 4.4:+20197823 MS.gene35079:CDS
AAATTGAGGAGATTGTTGAG+AGG 0.621276 4.4:+20197988 MS.gene35079:CDS
AAGTCTGGTTCAGGAGCAAG+TGG 0.621847 4.4:+20199088 MS.gene35079:CDS
GTATAAGAATGATGTTGATG+AGG 0.625258 4.4:+20198427 MS.gene35079:CDS
CCATATATAATATGCTTGGG+AGG 0.626100 4.4:-20199214 None:intergenic
GTTTACGATCTTTGTCGATG+AGG 0.627835 4.4:-20197668 None:intergenic
GTCAAAGATCTTCGTAAACA+CGG 0.631895 4.4:+20197630 MS.gene35079:CDS
CTGAACCAGACTTAGGAGCA+CGG 0.640321 4.4:-20199078 None:intergenic
ATTTCACGGTCACCAGCAGA+CGG 0.640573 4.4:-20197969 None:intergenic
ACAGACAGCTAGCTTTGGCA+AGG 0.641417 4.4:+20198990 MS.gene35079:CDS
AGGTCAATAAGAGGACTGGA+GGG 0.644829 4.4:+20198447 MS.gene35079:CDS
CCAAGCACATCATGAACCAA+CGG 0.646610 4.4:-20198260 None:intergenic
CACGAAGCATTTGATGAATG+CGG 0.648032 4.4:+20198511 MS.gene35079:CDS
ACATCTGAACTACTGAGGTG+GGG 0.648073 4.4:-20199323 None:intergenic
GAACTTCTCGGTGTGCTGAG+AGG 0.648753 4.4:+20198689 MS.gene35079:CDS
TCGAGCAGCTTACGTTGCTG+GGG 0.660501 4.4:+20199269 MS.gene35079:CDS
TGATTGATAAAGCGATCGTG+AGG 0.664290 4.4:-20197763 None:intergenic
CGTTACCTGAGCTGACTGAG+AGG 0.681656 4.4:+20198540 MS.gene35079:CDS
ATCTCAGCCGGCCCACCACG+CGG 0.684607 4.4:-20198071 None:intergenic
CATTCACATCTGAACTACTG+AGG 0.684802 4.4:-20199328 None:intergenic
GACTGGAGGGAATCACGGTG+CGG 0.708144 4.4:+20198460 MS.gene35079:CDS
AACGGCGCTGAGAGAGTGTG+AGG 0.717344 4.4:+20198802 MS.gene35079:CDS
GAACCAGACTTAGGAGCACG+GGG 0.729204 4.4:-20199076 None:intergenic
TGTTGGGTGAGATCAAGGAG+AGG 0.746514 4.4:+20198603 MS.gene35079:CDS
TGGTTGAACGAAATAAACGG+CGG 0.753853 4.4:-20197706 None:intergenic
CCGGTTATTAGGTGTCCGCG+TGG 0.779586 4.4:+20198056 MS.gene35079:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAATTTGTTTACTGA+AGG + chr4.4:20198140-20198159 MS.gene35079:CDS 15.0%
! AAAACAATTGCTTCCTTAAA+TGG - chr4.4:20199130-20199149 None:intergenic 25.0%
! AATTGGTTGAACGAAATAAA+CGG - chr4.4:20197712-20197731 None:intergenic 25.0%
! AGATCTTTGACATGAATTAA+TGG - chr4.4:20197621-20197640 None:intergenic 25.0%
! GTTCCATATATAATATGCTT+GGG - chr4.4:20199220-20199239 None:intergenic 25.0%
!!! AATAATTTGTTTACTGAAGG+TGG + chr4.4:20198143-20198162 MS.gene35079:CDS 25.0%
!!! ATAATTTGTTTACTGAAGGT+GGG + chr4.4:20198144-20198163 MS.gene35079:CDS 25.0%
!!! TGAGGATAATTTGTTTTCAT+TGG + chr4.4:20197914-20197933 MS.gene35079:CDS 25.0%
ATTGTTGAGAGGATTGTTAA+TGG + chr4.4:20197999-20198018 MS.gene35079:CDS 30.0%
CATCATGTATCTGATTTCAT+CGG + chr4.4:20198745-20198764 MS.gene35079:CDS 30.0%
CGTTCCATATATAATATGCT+TGG - chr4.4:20199221-20199240 None:intergenic 30.0%
CTATCAAAAACACACAAAAC+CGG - chr4.4:20198194-20198213 None:intergenic 30.0%
GTATAAGAATGATGTTGATG+AGG + chr4.4:20198427-20198446 MS.gene35079:CDS 30.0%
TTGTTGAGAGGATTGTTAAT+GGG + chr4.4:20198000-20198019 MS.gene35079:CDS 30.0%
! ATTTTGTTAGTTCGTTTCAG+AGG + chr4.4:20198168-20198187 MS.gene35079:CDS 30.0%
! CAGAAGTAATATTGTTGACT+GGG + chr4.4:20198901-20198920 MS.gene35079:CDS 30.0%
! GAAGCAATTGTTTTCATGAT+TGG + chr4.4:20199136-20199155 MS.gene35079:CDS 30.0%
!!! TAATGGGTTGTTTTGTGTTT+TGG + chr4.4:20198016-20198035 MS.gene35079:CDS 30.0%
AAATTGAGGAGATTGTTGAG+AGG + chr4.4:20197988-20198007 MS.gene35079:CDS 35.0%
AACCATTAATCCAACTGAAG+TGG + chr4.4:20198769-20198788 MS.gene35079:CDS 35.0%
AACCTAAACCAACCAATAAC+AGG + chr4.4:20197522-20197541 MS.gene35079:CDS 35.0%
AGAATGACATGATGGTTAGA+GGG + chr4.4:20198651-20198670 MS.gene35079:CDS 35.0%
ATTGAAAGGAGTGAACTTCT+CGG + chr4.4:20198677-20198696 MS.gene35079:CDS 35.0%
CAACAATCTCCTCAATTTCA+CGG - chr4.4:20197986-20198005 None:intergenic 35.0%
CCATATATAATATGCTTGGG+AGG - chr4.4:20199217-20199236 None:intergenic 35.0%
CCATTTGAAAGGTCCATTTA+AGG + chr4.4:20199114-20199133 MS.gene35079:CDS 35.0%
CCTCCCAAGCATATTATATA+TGG + chr4.4:20199214-20199233 MS.gene35079:CDS 35.0%
CCTTAAATGGACCTTTCAAA+TGG - chr4.4:20199117-20199136 None:intergenic 35.0%
CGATGAAATCAGATACATGA+TGG - chr4.4:20198747-20198766 None:intergenic 35.0%
GACAGAATTTGTCGTAGATA+AGG - chr4.4:20197584-20197603 None:intergenic 35.0%
GCAGAAGTAATATTGTTGAC+TGG + chr4.4:20198900-20198919 MS.gene35079:CDS 35.0%
GCTTGATTCATATGCTAAGA+AGG + chr4.4:20198628-20198647 MS.gene35079:CDS 35.0%
GTCAAAGATCTTCGTAAACA+CGG + chr4.4:20197630-20197649 MS.gene35079:CDS 35.0%
TAACATTGCTACTGTGTTGT+TGG + chr4.4:20198586-20198605 MS.gene35079:CDS 35.0%
TAAGAAGGAGAATGACATGA+TGG + chr4.4:20198643-20198662 MS.gene35079:CDS 35.0%
TAAGTCTCTGAATGTTTCGT+TGG + chr4.4:20198859-20198878 MS.gene35079:CDS 35.0%
TACATATCTGTCTCAGGATT+TGG - chr4.4:20199043-20199062 None:intergenic 35.0%
TCGATGTTGAGAAATTGAGA+TGG - chr4.4:20197791-20197810 None:intergenic 35.0%
TTCAGCATGACTTTAGGTAT+AGG + chr4.4:20198237-20198256 MS.gene35079:CDS 35.0%
TTCGATTCAGCGAATTTCAA+AGG + chr4.4:20197860-20197879 MS.gene35079:CDS 35.0%
! AACATTGCTACTGTGTTGTT+GGG + chr4.4:20198587-20198606 MS.gene35079:CDS 35.0%
! ATGTTGATGAGGTCAATAAG+AGG + chr4.4:20198438-20198457 MS.gene35079:CDS 35.0%
! ATTGTTTTCATGATTGGTGG+TGG + chr4.4:20199142-20199161 MS.gene35079:CDS 35.0%
! GCAATTGTTTTCATGATTGG+TGG + chr4.4:20199139-20199158 MS.gene35079:CDS 35.0%
! GTTGTTGTTGTTCCTGTTAT+TGG - chr4.4:20197537-20197556 None:intergenic 35.0%
! TGAATAGGTTGAGTGTTCAA+GGG + chr4.4:20198291-20198310 MS.gene35079:CDS 35.0%
! TTGAATAGGTTGAGTGTTCA+AGG + chr4.4:20198290-20198309 MS.gene35079:CDS 35.0%
! TTGCTATTCAGCATGACTTT+AGG + chr4.4:20198231-20198250 MS.gene35079:CDS 35.0%
! TTGTTGTTCCTGTTATTGGT+TGG - chr4.4:20197533-20197552 None:intergenic 35.0%
!! CGGTTTTGTGTGTTTTTGAT+AGG + chr4.4:20198192-20198211 MS.gene35079:CDS 35.0%
!! TCTTGAGTTTGTTACACTTG+AGG + chr4.4:20197896-20197915 MS.gene35079:CDS 35.0%
!! TTCCTGTTATTGGTTGGTTT+AGG - chr4.4:20197527-20197546 None:intergenic 35.0%
AAGTCATGCTGAATAGCAAC+CGG - chr4.4:20198230-20198249 None:intergenic 40.0%
AATCTTAATGATCCGTCTGC+TGG + chr4.4:20197957-20197976 MS.gene35079:CDS 40.0%
ACTGTTGAAGCCTTGATTGA+AGG + chr4.4:20199013-20199032 MS.gene35079:CDS 40.0%
ATGCTTGAAGATCTTGCTTC+GGG + chr4.4:20197822-20197841 MS.gene35079:CDS 40.0%
ATTTGGTCTCCCTTCAATCA+AGG - chr4.4:20199026-20199045 None:intergenic 40.0%
CATTAATCCAACTGAAGTGG+AGG + chr4.4:20198772-20198791 MS.gene35079:CDS 40.0%
CTCCACTTCAGTTGGATTAA+TGG - chr4.4:20198774-20198793 None:intergenic 40.0%
CTGTTGAAGCCTTGATTGAA+GGG + chr4.4:20199014-20199033 MS.gene35079:CDS 40.0%
GAAGCAAGATCTTCAAGCAT+CGG - chr4.4:20197822-20197841 None:intergenic 40.0%
GAGAATGACATGATGGTTAG+AGG + chr4.4:20198650-20198669 MS.gene35079:CDS 40.0%
GATGCTTGAAGATCTTGCTT+CGG + chr4.4:20197821-20197840 MS.gene35079:CDS 40.0%
GTTTACGATCTTTGTCGATG+AGG - chr4.4:20197671-20197690 None:intergenic 40.0%
TGATTGATAAAGCGATCGTG+AGG - chr4.4:20197766-20197785 None:intergenic 40.0%
TGCGTTGGATCAAAGGATTA+GGG + chr4.4:20198103-20198122 MS.gene35079:CDS 40.0%
TGGGATGAGATCTTATGAGT+TGG + chr4.4:20198322-20198341 MS.gene35079:CDS 40.0%
TGGTTGAACGAAATAAACGG+CGG - chr4.4:20197709-20197728 None:intergenic 40.0%
! AAGATGGGTTTGGGTAATGT+TGG + chr4.4:20199295-20199314 MS.gene35079:CDS 40.0%
! CACGAAGCATTTGATGAATG+CGG + chr4.4:20198511-20198530 MS.gene35079:CDS 40.0%
! GAATAGGTTGAGTGTTCAAG+GGG + chr4.4:20198292-20198311 MS.gene35079:CDS 40.0%
! TGATAGGAATTTTGAGCTGC+CGG + chr4.4:20198208-20198227 MS.gene35079:CDS 40.0%
! TTTGATGGGACGGATTTGAT+TGG + chr4.4:20198485-20198504 MS.gene35079:CDS 40.0%
!! GACAGAACTTTTGACTGGAA+TGG + chr4.4:20199240-20199259 MS.gene35079:CDS 40.0%
!! TGCTTGGGTTGAAGTTGAAT+AGG + chr4.4:20198276-20198295 MS.gene35079:CDS 40.0%
!!! GATTCGTTTTGGGTTGCAAA+TGG + chr4.4:20198353-20198372 MS.gene35079:CDS 40.0%
!!! GGATAGTGCTGATTCGTTTT+GGG + chr4.4:20198343-20198362 MS.gene35079:CDS 40.0%
!!! TGGATAGTGCTGATTCGTTT+TGG + chr4.4:20198342-20198361 MS.gene35079:CDS 40.0%
!!! TTTTGTGTTTTGGCTACGCT+TGG + chr4.4:20198026-20198045 MS.gene35079:CDS 40.0%
AGGTCAATAAGAGGACTGGA+GGG + chr4.4:20198447-20198466 MS.gene35079:CDS 45.0%
CCAAGCACATCATGAACCAA+CGG - chr4.4:20198263-20198282 None:intergenic 45.0%
CGCTGAACGTTGGATTGAAT+TGG - chr4.4:20197729-20197748 None:intergenic 45.0%
CTGAATCGAATCCGAAGCTA+TGG - chr4.4:20197850-20197869 None:intergenic 45.0%
CTGCGTTGGATCAAAGGATT+AGG + chr4.4:20198102-20198121 MS.gene35079:CDS 45.0%
GATGAGGTCAATAAGAGGAC+TGG + chr4.4:20198443-20198462 MS.gene35079:CDS 45.0%
GCAAGTGGCAACCATTTGAA+AGG + chr4.4:20199103-20199122 MS.gene35079:CDS 45.0%
GGTTGAACGAAATAAACGGC+GGG - chr4.4:20197708-20197727 None:intergenic 45.0%
TCAATAAGTGCAGTGACTGC+TGG + chr4.4:20198944-20198963 MS.gene35079:CDS 45.0%
TCCTGAGACAGATATGTACC+TGG + chr4.4:20199045-20199064 MS.gene35079:CDS 45.0%
TGACTGTCCATAGAGCTTCT+CGG - chr4.4:20198927-20198946 None:intergenic 45.0%
TGACTTTAGGTATAGGCCGT+TGG + chr4.4:20198244-20198263 MS.gene35079:CDS 45.0%
TGCTTGAAGATCTTGCTTCG+GGG + chr4.4:20197823-20197842 MS.gene35079:CDS 45.0%
TGTTAGTTCGTTTCAGAGGC+CGG + chr4.4:20198172-20198191 MS.gene35079:CDS 45.0%
TTGAGTGTTCAAGGGGAGAA+AGG + chr4.4:20198299-20198318 MS.gene35079:CDS 45.0%
TTGCTACTGCGTTGGATCAA+AGG + chr4.4:20198096-20198115 MS.gene35079:CDS 45.0%
! GGAACGACAGAACTTTTGAC+TGG + chr4.4:20199235-20199254 MS.gene35079:CDS 45.0%
! TAGTGACAGACAGCTAGCTT+TGG + chr4.4:20198985-20199004 MS.gene35079:CDS 45.0%
! TGTGTTGTTGGGTGAGATCA+AGG + chr4.4:20198598-20198617 MS.gene35079:CDS 45.0%
!! CGTTGGTTCATGATGTGCTT+GGG + chr4.4:20198261-20198280 MS.gene35079:CDS 45.0%
!! TGGTTAGAGGGAGCATTGAA+AGG + chr4.4:20198663-20198682 MS.gene35079:CDS 45.0%
!! TTGGTGTTGTGCCGGTTATT+AGG + chr4.4:20198045-20198064 MS.gene35079:CDS 45.0%
!!! CGTTTTGGGTTGCAAATGGT+GGG + chr4.4:20198357-20198376 MS.gene35079:CDS 45.0%
!!! TCGTTTTGGGTTGCAAATGG+TGG + chr4.4:20198356-20198375 MS.gene35079:CDS 45.0%
AAGAGGACTGGAGGGAATCA+CGG + chr4.4:20198455-20198474 MS.gene35079:CDS 50.0%
AATCACGGTGCGGAGTTTGA+TGG + chr4.4:20198470-20198489 MS.gene35079:CDS 50.0%
ACGTTGCTGGGGAAGAAGAT+GGG + chr4.4:20199280-20199299 MS.gene35079:CDS 50.0%
AGTGTTCAAGGGGAGAAAGG+TGG + chr4.4:20198302-20198321 MS.gene35079:CDS 50.0%
ATCACGGTGCGGAGTTTGAT+GGG + chr4.4:20198471-20198490 MS.gene35079:CDS 50.0%
ATTTCACGGTCACCAGCAGA+CGG - chr4.4:20197972-20197991 None:intergenic 50.0%
CTGAACCAGACTTAGGAGCA+CGG - chr4.4:20199081-20199100 None:intergenic 50.0%
CTTGCTCCTGAACCAGACTT+AGG - chr4.4:20199088-20199107 None:intergenic 50.0%
GAGGTCAATAAGAGGACTGG+AGG + chr4.4:20198446-20198465 MS.gene35079:CDS 50.0%
GCCAGGTACATATCTGTCTC+AGG - chr4.4:20199049-20199068 None:intergenic 50.0%
GTGTTCAAGGGGAGAAAGGT+GGG + chr4.4:20198303-20198322 MS.gene35079:CDS 50.0%
GTTGGAGTTTCCTGAGGTTG+CGG + chr4.4:20198379-20198398 MS.gene35079:CDS 50.0%
TACGTTGCTGGGGAAGAAGA+TGG + chr4.4:20199279-20199298 MS.gene35079:CDS 50.0%
TGAAGTGGAGGCTGTGGAAA+CGG + chr4.4:20198784-20198803 MS.gene35079:CDS 50.0%
TGAGATGGTTGCTACTGCGT+TGG + chr4.4:20198088-20198107 MS.gene35079:CDS 50.0%
TGCGATGATTCGCTGAACGT+TGG - chr4.4:20197739-20197758 None:intergenic 50.0%
TGCTGGTGACCGTGAAATTG+AGG + chr4.4:20197974-20197993 MS.gene35079:CDS 50.0%
TGTTGGGTGAGATCAAGGAG+AGG + chr4.4:20198603-20198622 MS.gene35079:CDS 50.0%
TTATTAGGTGTCCGCGTGGT+GGG + chr4.4:20198060-20198079 MS.gene35079:CDS 50.0%
! AACTTCTCGGTGTGCTGAGA+GGG + chr4.4:20198690-20198709 MS.gene35079:CDS 50.0%
! AAGTCTGGTTCAGGAGCAAG+TGG + chr4.4:20199088-20199107 MS.gene35079:CDS 50.0%
! CTGGGGAAGAAGATGGGTTT+GGG + chr4.4:20199286-20199305 MS.gene35079:CDS 50.0%
! TGAACCAGACTTAGGAGCAC+GGG - chr4.4:20199080-20199099 None:intergenic 50.0%
!! ACAGACAGCTAGCTTTGGCA+AGG + chr4.4:20198990-20199009 MS.gene35079:CDS 50.0%
!! AGATCTTCAAGCATCGGACG+AGG - chr4.4:20197816-20197835 None:intergenic 50.0%
!! CCGTTGGTTCATGATGTGCT+TGG + chr4.4:20198260-20198279 MS.gene35079:CDS 50.0%
!! TTGGGTTGCAAATGGTGGGT+TGG + chr4.4:20198361-20198380 MS.gene35079:CDS 50.0%
AACGGCGGGAACATCGTGAA+CGG - chr4.4:20197694-20197713 None:intergenic 55.0%
CCACGCGGACACCTAATAAC+CGG - chr4.4:20198059-20198078 None:intergenic 55.0%
CGTTACCTGAGCTGACTGAG+AGG + chr4.4:20198540-20198559 MS.gene35079:CDS 55.0%
GAGAGGGAAGGGAACGAAGA+TGG + chr4.4:20198706-20198725 MS.gene35079:CDS 55.0%
GCAGTAGCAACCATCTCAGC+CGG - chr4.4:20198086-20198105 None:intergenic 55.0%
GTCGAGCAGCTTACGTTGCT+GGG + chr4.4:20199268-20199287 MS.gene35079:CDS 55.0%
GTTATTAGGTGTCCGCGTGG+TGG + chr4.4:20198059-20198078 MS.gene35079:CDS 55.0%
TCAATCTCCACCGCAACCTC+AGG - chr4.4:20198392-20198411 None:intergenic 55.0%
TCCAACTGAAGTGGAGGCTG+TGG + chr4.4:20198778-20198797 MS.gene35079:CDS 55.0%
TCCACAGCCTCCACTTCAGT+TGG - chr4.4:20198782-20198801 None:intergenic 55.0%
TCGAGCAGCTTACGTTGCTG+GGG + chr4.4:20199269-20199288 MS.gene35079:CDS 55.0%
TGCTTCCTCTCAGTCAGCTC+AGG - chr4.4:20198548-20198567 None:intergenic 55.0%
TGCTTCGGGGACCATAGCTT+CGG + chr4.4:20197836-20197855 MS.gene35079:CDS 55.0%
TGTCGAGCAGCTTACGTTGC+TGG + chr4.4:20199267-20199286 MS.gene35079:CDS 55.0%
! CGTGCTCCTAAGTCTGGTTC+AGG + chr4.4:20199079-20199098 MS.gene35079:CDS 55.0%
! GAACCAGACTTAGGAGCACG+GGG - chr4.4:20199079-20199098 None:intergenic 55.0%
! GAACTTCTCGGTGTGCTGAG+AGG + chr4.4:20198689-20198708 MS.gene35079:CDS 55.0%
! GCTGGGGAAGAAGATGGGTT+TGG + chr4.4:20199285-20199304 MS.gene35079:CDS 55.0%
!! TGGTGGGTTGGAGTTTCCTG+AGG + chr4.4:20198373-20198392 MS.gene35079:CDS 55.0%
ACGGCGGGAACATCGTGAAC+GGG - chr4.4:20197693-20197712 None:intergenic 60.0%
CCGGTTATTAGGTGTCCGCG+TGG + chr4.4:20198056-20198075 MS.gene35079:CDS 60.0%
CGGTGCGGAGTTTGATGGGA+CGG + chr4.4:20198475-20198494 MS.gene35079:CDS 60.0%
GACTGGAGGGAATCACGGTG+CGG + chr4.4:20198460-20198479 MS.gene35079:CDS 60.0%
GACTGGGCCGAGAAGCTCTA+TGG + chr4.4:20198917-20198936 MS.gene35079:CDS 60.0%
GAGCACGGGGATCAAAAGCC+AGG - chr4.4:20199066-20199085 None:intergenic 60.0%
GATCCCCGTGCTCCTAAGTC+TGG + chr4.4:20199073-20199092 MS.gene35079:CDS 60.0%
GGAGTTTCCTGAGGTTGCGG+TGG + chr4.4:20198382-20198401 MS.gene35079:CDS 60.0%
! AACGGCGCTGAGAGAGTGTG+AGG + chr4.4:20198802-20198821 MS.gene35079:CDS 60.0%
! CTCGGTGTGCTGAGAGGGAA+GGG + chr4.4:20198695-20198714 MS.gene35079:CDS 60.0%
! TCTCGGTGTGCTGAGAGGGA+AGG + chr4.4:20198694-20198713 MS.gene35079:CDS 60.0%
!! GGCTACGCTTGGTGTTGTGC+CGG + chr4.4:20198037-20198056 MS.gene35079:CDS 60.0%
ATCTCAGCCGGCCCACCACG+CGG - chr4.4:20198074-20198093 None:intergenic 70.0%
!! TAGGTGTCCGCGTGGTGGGC+CGG + chr4.4:20198064-20198083 MS.gene35079:CDS 70.0%
!! GCGTGGTGGGCCGGCTGAGA+TGG + chr4.4:20198073-20198092 MS.gene35079:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 20197516 20199336 20197516 ID=MS.gene35079
chr4.4 mRNA 20197516 20199336 20197516 ID=MS.gene35079.t1;Parent=MS.gene35079
chr4.4 exon 20197516 20199336 20197516 ID=MS.gene35079.t1.exon1;Parent=MS.gene35079.t1
chr4.4 CDS 20197516 20199336 20197516 ID=cds.MS.gene35079.t1;Parent=MS.gene35079.t1
Gene Sequence

>MS.gene35079

ATGTTAAACCTAAACCAACCAATAACAGGAACAACAACAACAACGAATGAAGAAGCATACAAGATCCTTATCTACGACAAATTCTGTCAAAACATTCTCTCACCATTAATTCATGTCAAAGATCTTCGTAAACACGGTGTCACTCTCTATTTCCTCATCGACAAAGATCGTAAACCCGTTCACGATGTTCCCGCCGTTTATTTCGTTCAACCAATTCAATCCAACGTTCAGCGAATCATCGCAGATGCCTCACGATCGCTTTATCAATCATTCCATCTCAATTTCTCAACATCGATTCCTCGTCCGATGCTTGAAGATCTTGCTTCGGGGACCATAGCTTCGGATTCGATTCAGCGAATTTCAAAGGTTCATGATCAGTATCTTGAGTTTGTTACACTTGAGGATAATTTGTTTTCATTGGCTCAGAAATCTTGTTTTTTGAATCTTAATGATCCGTCTGCTGGTGACCGTGAAATTGAGGAGATTGTTGAGAGGATTGTTAATGGGTTGTTTTGTGTTTTGGCTACGCTTGGTGTTGTGCCGGTTATTAGGTGTCCGCGTGGTGGGCCGGCTGAGATGGTTGCTACTGCGTTGGATCAAAGGATTAGGGATCATTTGTTGTCTAAAAATAATTTGTTTACTGAAGGTGGGAATTTTGTTAGTTCGTTTCAGAGGCCGGTTTTGTGTGTTTTTGATAGGAATTTTGAGCTGCCGGTTGCTATTCAGCATGACTTTAGGTATAGGCCGTTGGTTCATGATGTGCTTGGGTTGAAGTTGAATAGGTTGAGTGTTCAAGGGGAGAAAGGTGGGATGAGATCTTATGAGTTGGATAGTGCTGATTCGTTTTGGGTTGCAAATGGTGGGTTGGAGTTTCCTGAGGTTGCGGTGGAGATTGAGACTCAGCTGAATAAGTATAAGAATGATGTTGATGAGGTCAATAAGAGGACTGGAGGGAATCACGGTGCGGAGTTTGATGGGACGGATTTGATTGGTAACACGAAGCATTTGATGAATGCGGTGAACTCGTTACCTGAGCTGACTGAGAGGAAGCAAGTGATTGATAAGCATACTAACATTGCTACTGTGTTGTTGGGTGAGATCAAGGAGAGGTCGCTTGATTCATATGCTAAGAAGGAGAATGACATGATGGTTAGAGGGAGCATTGAAAGGAGTGAACTTCTCGGTGTGCTGAGAGGGAAGGGAACGAAGATGGATAAGCTTCGATTTGCCATCATGTATCTGATTTCATCGGAAACCATTAATCCAACTGAAGTGGAGGCTGTGGAAACGGCGCTGAGAGAGTGTGAGGTTGATACTGCTGCTTTTCAGTATGTGAAAAAGATTAAGTCTCTGAATGTTTCGTTGGCTAATGCAAATTCTGCTAGCAGAAGTAATATTGTTGACTGGGCCGAGAAGCTCTATGGACAGTCAATAAGTGCAGTGACTGCTGGTGTCAAAAATCTGTTATCTAGTGACAGACAGCTAGCTTTGGCAAGGACTGTTGAAGCCTTGATTGAAGGGAGACCAAATCCTGAGACAGATATGTACCTGGCTTTTGATCCCCGTGCTCCTAAGTCTGGTTCAGGAGCAAGTGGCAACCATTTGAAAGGTCCATTTAAGGAAGCAATTGTTTTCATGATTGGTGGTGGTAATTATGTTGAATATTGTAGTCTGCAAGAGCTTGCTCAAAATCAGCAGCCTCCCAAGCATATTATATATGGAACGACAGAACTTTTGACTGGAATGGACTTTGTCGAGCAGCTTACGTTGCTGGGGAAGAAGATGGGTTTGGGTAATGTTGGTTCTGCCCCACCTCAGTAG

Protein sequence

>MS.gene35079.t1

MLNLNQPITGTTTTTNEEAYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPIQSNVQRIIADASRSLYQSFHLNFSTSIPRPMLEDLASGTIASDSIQRISKVHDQYLEFVTLEDNLFSLAQKSCFLNLNDPSAGDREIEEIVERIVNGLFCVLATLGVVPVIRCPRGGPAEMVATALDQRIRDHLLSKNNLFTEGGNFVSSFQRPVLCVFDRNFELPVAIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMRSYELDSADSFWVANGGLEFPEVAVEIETQLNKYKNDVDEVNKRTGGNHGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGSIERSELLGVLRGKGTKMDKLRFAIMYLISSETINPTEVEAVETALRECEVDTAAFQYVKKIKSLNVSLANANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSSDRQLALARTVEALIEGRPNPETDMYLAFDPRAPKSGSGASGNHLKGPFKEAIVFMIGGGNYVEYCSLQELAQNQQPPKHIIYGTTELLTGMDFVEQLTLLGKKMGLGNVGSAPPQ