Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35079.t1 | XP_013457265.1 | 97.5 | 609 | 12 | 1 | 1 | 606 | 16 | 624 | 0.00E+00 | 1172.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35079.t1 | Q9SL48 | 77.4 | 602 | 130 | 4 | 1 | 598 | 16 | 615 | 7.9e-271 | 934.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35079.t1 | G7ZYG6 | 97.5 | 609 | 12 | 1 | 1 | 606 | 16 | 624 | 0.0e+00 | 1172.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene35079 | MS.gene072972 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35079.t1 | MTR_4g094405 | 98.851 | 609 | 4 | 1 | 1 | 606 | 16 | 624 | 0.0 | 1246 |
MS.gene35079.t1 | MTR_3g090170 | 23.792 | 559 | 350 | 21 | 21 | 558 | 22 | 525 | 4.48e-22 | 100 |
MS.gene35079.t1 | MTR_4g023610 | 23.733 | 434 | 284 | 15 | 16 | 426 | 40 | 449 | 1.13e-21 | 99.8 |
MS.gene35079.t1 | MTR_3g090170 | 25.059 | 423 | 266 | 14 | 21 | 425 | 22 | 411 | 1.73e-19 | 92.0 |
MS.gene35079.t1 | MTR_4g102120 | 22.807 | 399 | 272 | 11 | 4 | 383 | 29 | 410 | 1.80e-18 | 89.7 |
MS.gene35079.t1 | MTR_8g052140 | 92.308 | 39 | 3 | 0 | 31 | 69 | 35 | 73 | 1.42e-17 | 78.2 |
MS.gene35079.t1 | MTR_5g011790 | 21.262 | 428 | 300 | 13 | 4 | 412 | 29 | 438 | 9.75e-17 | 84.3 |
MS.gene35079.t1 | MTR_5g011790 | 21.262 | 428 | 300 | 13 | 4 | 412 | 29 | 438 | 1.52e-16 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35079.t1 | AT2G17980 | 77.409 | 602 | 130 | 4 | 1 | 598 | 16 | 615 | 0.0 | 975 |
MS.gene35079.t1 | AT4G31740 | 64.948 | 194 | 44 | 2 | 404 | 597 | 1 | 170 | 3.42e-76 | 240 |
MS.gene35079.t1 | AT4G36100 | 65.185 | 135 | 40 | 3 | 369 | 502 | 107 | 235 | 9.36e-45 | 159 |
MS.gene35079.t1 | AT4G12120 | 24.318 | 403 | 258 | 14 | 19 | 397 | 42 | 421 | 4.82e-21 | 97.8 |
MS.gene35079.t1 | AT1G02010 | 22.454 | 432 | 296 | 15 | 10 | 426 | 3 | 410 | 1.01e-19 | 94.0 |
MS.gene35079.t1 | AT1G12360 | 21.411 | 397 | 279 | 9 | 4 | 383 | 27 | 407 | 1.13e-19 | 93.6 |
MS.gene35079.t1 | AT1G02010 | 22.350 | 434 | 298 | 15 | 8 | 426 | 33 | 442 | 1.30e-19 | 93.6 |
MS.gene35079.t1 | AT1G02010 | 22.350 | 434 | 298 | 15 | 8 | 426 | 33 | 442 | 1.35e-19 | 93.6 |
MS.gene35079.t1 | AT1G02010 | 22.350 | 434 | 298 | 15 | 8 | 426 | 33 | 442 | 1.45e-19 | 93.2 |
MS.gene35079.t1 | AT1G77140 | 21.635 | 587 | 388 | 20 | 21 | 588 | 22 | 555 | 4.23e-19 | 91.7 |
MS.gene35079.t1 | AT1G02010 | 21.505 | 465 | 294 | 17 | 8 | 426 | 33 | 472 | 4.82e-16 | 82.4 |
Find 151 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACAATTGCTTCCTTAAA+TGG | 0.132005 | 4.4:-20199127 | None:intergenic |
CTCCACTTCAGTTGGATTAA+TGG | 0.163713 | 4.4:-20198771 | None:intergenic |
GTTGTTGTTGTTCCTGTTAT+TGG | 0.231973 | 4.4:-20197534 | None:intergenic |
CCATTTGAAAGGTCCATTTA+AGG | 0.236204 | 4.4:+20199114 | MS.gene35079:CDS |
GAGAATGACATGATGGTTAG+AGG | 0.262303 | 4.4:+20198650 | MS.gene35079:CDS |
AGATCTTTGACATGAATTAA+TGG | 0.270069 | 4.4:-20197618 | None:intergenic |
TGGATAGTGCTGATTCGTTT+TGG | 0.273156 | 4.4:+20198342 | MS.gene35079:CDS |
TGTCGAGCAGCTTACGTTGC+TGG | 0.298656 | 4.4:+20199267 | MS.gene35079:CDS |
CCTCCCAAGCATATTATATA+TGG | 0.307162 | 4.4:+20199214 | MS.gene35079:CDS |
ATGCTTGAAGATCTTGCTTC+GGG | 0.309638 | 4.4:+20197822 | MS.gene35079:CDS |
TTGCTATTCAGCATGACTTT+AGG | 0.325340 | 4.4:+20198231 | MS.gene35079:CDS |
CTGCGTTGGATCAAAGGATT+AGG | 0.326789 | 4.4:+20198102 | MS.gene35079:CDS |
TTGGTGTTGTGCCGGTTATT+AGG | 0.342813 | 4.4:+20198045 | MS.gene35079:CDS |
ATTGTTGAGAGGATTGTTAA+TGG | 0.346750 | 4.4:+20197999 | MS.gene35079:CDS |
CGCTGAACGTTGGATTGAAT+TGG | 0.351150 | 4.4:-20197726 | None:intergenic |
TACATATCTGTCTCAGGATT+TGG | 0.351181 | 4.4:-20199040 | None:intergenic |
AATAATTTGTTTACTGAAGG+TGG | 0.354251 | 4.4:+20198143 | MS.gene35079:CDS |
CTGGGGAAGAAGATGGGTTT+GGG | 0.358245 | 4.4:+20199286 | MS.gene35079:CDS |
GATCCCCGTGCTCCTAAGTC+TGG | 0.372753 | 4.4:+20199073 | MS.gene35079:CDS |
GATGCTTGAAGATCTTGCTT+CGG | 0.373839 | 4.4:+20197821 | MS.gene35079:CDS |
GTCGAGCAGCTTACGTTGCT+GGG | 0.381605 | 4.4:+20199268 | MS.gene35079:CDS |
TTCCTGTTATTGGTTGGTTT+AGG | 0.389171 | 4.4:-20197524 | None:intergenic |
AACCTAAACCAACCAATAAC+AGG | 0.402200 | 4.4:+20197522 | MS.gene35079:CDS |
TAGGTGTCCGCGTGGTGGGC+CGG | 0.402954 | 4.4:+20198064 | MS.gene35079:CDS |
GACAGAATTTGTCGTAGATA+AGG | 0.409373 | 4.4:-20197581 | None:intergenic |
AAGATGGGTTTGGGTAATGT+TGG | 0.413058 | 4.4:+20199295 | MS.gene35079:CDS |
AACATTGCTACTGTGTTGTT+GGG | 0.414573 | 4.4:+20198587 | MS.gene35079:CDS |
GACTGGGCCGAGAAGCTCTA+TGG | 0.415523 | 4.4:+20198917 | MS.gene35079:CDS |
TAACATTGCTACTGTGTTGT+TGG | 0.421174 | 4.4:+20198586 | MS.gene35079:CDS |
TGCTTCGGGGACCATAGCTT+CGG | 0.422216 | 4.4:+20197836 | MS.gene35079:CDS |
TTGTTGAGAGGATTGTTAAT+GGG | 0.426907 | 4.4:+20198000 | MS.gene35079:CDS |
CGTGCTCCTAAGTCTGGTTC+AGG | 0.428583 | 4.4:+20199079 | MS.gene35079:CDS |
TTGAATAGGTTGAGTGTTCA+AGG | 0.432954 | 4.4:+20198290 | MS.gene35079:CDS |
CGTTGGTTCATGATGTGCTT+GGG | 0.434927 | 4.4:+20198261 | MS.gene35079:CDS |
ATTTGGTCTCCCTTCAATCA+AGG | 0.437182 | 4.4:-20199023 | None:intergenic |
GCTGGGGAAGAAGATGGGTT+TGG | 0.441069 | 4.4:+20199285 | MS.gene35079:CDS |
CCTTAAATGGACCTTTCAAA+TGG | 0.441471 | 4.4:-20199114 | None:intergenic |
CTGTTGAAGCCTTGATTGAA+GGG | 0.444683 | 4.4:+20199014 | MS.gene35079:CDS |
TGACTGTCCATAGAGCTTCT+CGG | 0.445565 | 4.4:-20198924 | None:intergenic |
TTTGATGGGACGGATTTGAT+TGG | 0.447772 | 4.4:+20198485 | MS.gene35079:CDS |
TACGTTGCTGGGGAAGAAGA+TGG | 0.450478 | 4.4:+20199279 | MS.gene35079:CDS |
TTGAGTGTTCAAGGGGAGAA+AGG | 0.451443 | 4.4:+20198299 | MS.gene35079:CDS |
CCACGCGGACACCTAATAAC+CGG | 0.453146 | 4.4:-20198056 | None:intergenic |
TGTTAGTTCGTTTCAGAGGC+CGG | 0.458725 | 4.4:+20198172 | MS.gene35079:CDS |
ACTGTTGAAGCCTTGATTGA+AGG | 0.458983 | 4.4:+20199013 | MS.gene35079:CDS |
TGCTTGGGTTGAAGTTGAAT+AGG | 0.461236 | 4.4:+20198276 | MS.gene35079:CDS |
GCGTGGTGGGCCGGCTGAGA+TGG | 0.467664 | 4.4:+20198073 | MS.gene35079:CDS |
ATAATTTGTTTACTGAAGGT+GGG | 0.468429 | 4.4:+20198144 | MS.gene35079:CDS |
GCAGAAGTAATATTGTTGAC+TGG | 0.470359 | 4.4:+20198900 | MS.gene35079:CDS |
TCAATCTCCACCGCAACCTC+AGG | 0.475104 | 4.4:-20198389 | None:intergenic |
AATCACGGTGCGGAGTTTGA+TGG | 0.479706 | 4.4:+20198470 | MS.gene35079:CDS |
CGTTCCATATATAATATGCT+TGG | 0.482424 | 4.4:-20199218 | None:intergenic |
TCCACAGCCTCCACTTCAGT+TGG | 0.483693 | 4.4:-20198779 | None:intergenic |
CAACAATCTCCTCAATTTCA+CGG | 0.487353 | 4.4:-20197983 | None:intergenic |
TAAGTCTCTGAATGTTTCGT+TGG | 0.487831 | 4.4:+20198859 | MS.gene35079:CDS |
TTCAGCATGACTTTAGGTAT+AGG | 0.488901 | 4.4:+20198237 | MS.gene35079:CDS |
TTATTAGGTGTCCGCGTGGT+GGG | 0.489264 | 4.4:+20198060 | MS.gene35079:CDS |
AACTTCTCGGTGTGCTGAGA+GGG | 0.491058 | 4.4:+20198690 | MS.gene35079:CDS |
CCGTTGGTTCATGATGTGCT+TGG | 0.493871 | 4.4:+20198260 | MS.gene35079:CDS |
GCCAGGTACATATCTGTCTC+AGG | 0.495844 | 4.4:-20199046 | None:intergenic |
GTTCCATATATAATATGCTT+GGG | 0.496796 | 4.4:-20199217 | None:intergenic |
TTGCTACTGCGTTGGATCAA+AGG | 0.498571 | 4.4:+20198096 | MS.gene35079:CDS |
AATCTTAATGATCCGTCTGC+TGG | 0.498721 | 4.4:+20197957 | MS.gene35079:CDS |
TGCTTCCTCTCAGTCAGCTC+AGG | 0.499034 | 4.4:-20198545 | None:intergenic |
ACGGCGGGAACATCGTGAAC+GGG | 0.500575 | 4.4:-20197690 | None:intergenic |
GTTGGAGTTTCCTGAGGTTG+CGG | 0.502834 | 4.4:+20198379 | MS.gene35079:CDS |
GAGAGGGAAGGGAACGAAGA+TGG | 0.504205 | 4.4:+20198706 | MS.gene35079:CDS |
ATTGAAAGGAGTGAACTTCT+CGG | 0.505612 | 4.4:+20198677 | MS.gene35079:CDS |
AAGTCATGCTGAATAGCAAC+CGG | 0.507005 | 4.4:-20198227 | None:intergenic |
ATCACGGTGCGGAGTTTGAT+GGG | 0.508088 | 4.4:+20198471 | MS.gene35079:CDS |
CTCGGTGTGCTGAGAGGGAA+GGG | 0.508637 | 4.4:+20198695 | MS.gene35079:CDS |
AATTGGTTGAACGAAATAAA+CGG | 0.509297 | 4.4:-20197709 | None:intergenic |
TGCGATGATTCGCTGAACGT+TGG | 0.509719 | 4.4:-20197736 | None:intergenic |
CTTGCTCCTGAACCAGACTT+AGG | 0.509749 | 4.4:-20199085 | None:intergenic |
TCCAACTGAAGTGGAGGCTG+TGG | 0.512353 | 4.4:+20198778 | MS.gene35079:CDS |
CAGAAGTAATATTGTTGACT+GGG | 0.512458 | 4.4:+20198901 | MS.gene35079:CDS |
TGAAGTGGAGGCTGTGGAAA+CGG | 0.514245 | 4.4:+20198784 | MS.gene35079:CDS |
TGCGTTGGATCAAAGGATTA+GGG | 0.520281 | 4.4:+20198103 | MS.gene35079:CDS |
GTGTTCAAGGGGAGAAAGGT+GGG | 0.520944 | 4.4:+20198303 | MS.gene35079:CDS |
TTCGATTCAGCGAATTTCAA+AGG | 0.521180 | 4.4:+20197860 | MS.gene35079:CDS |
TTGGGTTGCAAATGGTGGGT+TGG | 0.524353 | 4.4:+20198361 | MS.gene35079:CDS |
AGTGTTCAAGGGGAGAAAGG+TGG | 0.524971 | 4.4:+20198302 | MS.gene35079:CDS |
TTGTTGTTCCTGTTATTGGT+TGG | 0.526111 | 4.4:-20197530 | None:intergenic |
ACGTTGCTGGGGAAGAAGAT+GGG | 0.527243 | 4.4:+20199280 | MS.gene35079:CDS |
GGCTACGCTTGGTGTTGTGC+CGG | 0.528957 | 4.4:+20198037 | MS.gene35079:CDS |
CATCATGTATCTGATTTCAT+CGG | 0.529783 | 4.4:+20198745 | MS.gene35079:CDS |
TGAATAGGTTGAGTGTTCAA+GGG | 0.531169 | 4.4:+20198291 | MS.gene35079:CDS |
CACATCTGAACTACTGAGGT+GGG | 0.531717 | 4.4:-20199324 | None:intergenic |
TGGTTAGAGGGAGCATTGAA+AGG | 0.532998 | 4.4:+20198663 | MS.gene35079:CDS |
GAGCACGGGGATCAAAAGCC+AGG | 0.535204 | 4.4:-20199063 | None:intergenic |
TAGTGACAGACAGCTAGCTT+TGG | 0.538193 | 4.4:+20198985 | MS.gene35079:CDS |
TGACTTTAGGTATAGGCCGT+TGG | 0.538298 | 4.4:+20198244 | MS.gene35079:CDS |
TCTTGAGTTTGTTACACTTG+AGG | 0.539068 | 4.4:+20197896 | MS.gene35079:CDS |
TGGGATGAGATCTTATGAGT+TGG | 0.539391 | 4.4:+20198322 | MS.gene35079:CDS |
GCTTGATTCATATGCTAAGA+AGG | 0.541789 | 4.4:+20198628 | MS.gene35079:CDS |
CGATGAAATCAGATACATGA+TGG | 0.547327 | 4.4:-20198744 | None:intergenic |
TGTGTTGTTGGGTGAGATCA+AGG | 0.549244 | 4.4:+20198598 | MS.gene35079:CDS |
TGAACCAGACTTAGGAGCAC+GGG | 0.551638 | 4.4:-20199077 | None:intergenic |
CTGAATCGAATCCGAAGCTA+TGG | 0.553466 | 4.4:-20197847 | None:intergenic |
GCAGTAGCAACCATCTCAGC+CGG | 0.555050 | 4.4:-20198083 | None:intergenic |
CGGTGCGGAGTTTGATGGGA+CGG | 0.555506 | 4.4:+20198475 | MS.gene35079:CDS |
GTTATTAGGTGTCCGCGTGG+TGG | 0.559238 | 4.4:+20198059 | MS.gene35079:CDS |
TCTCGGTGTGCTGAGAGGGA+AGG | 0.564630 | 4.4:+20198694 | MS.gene35079:CDS |
AACCATTAATCCAACTGAAG+TGG | 0.570290 | 4.4:+20198769 | MS.gene35079:CDS |
GATGAGGTCAATAAGAGGAC+TGG | 0.574212 | 4.4:+20198443 | MS.gene35079:CDS |
GAATAGGTTGAGTGTTCAAG+GGG | 0.576422 | 4.4:+20198292 | MS.gene35079:CDS |
TGCTGGTGACCGTGAAATTG+AGG | 0.576895 | 4.4:+20197974 | MS.gene35079:CDS |
AACGGCGGGAACATCGTGAA+CGG | 0.577620 | 4.4:-20197691 | None:intergenic |
AAGAGGACTGGAGGGAATCA+CGG | 0.579431 | 4.4:+20198455 | MS.gene35079:CDS |
ATGTTGATGAGGTCAATAAG+AGG | 0.580113 | 4.4:+20198438 | MS.gene35079:CDS |
AGAATGACATGATGGTTAGA+GGG | 0.586500 | 4.4:+20198651 | MS.gene35079:CDS |
TCACATCTGAACTACTGAGG+TGG | 0.588791 | 4.4:-20199325 | None:intergenic |
GAAGCAAGATCTTCAAGCAT+CGG | 0.589526 | 4.4:-20197819 | None:intergenic |
TCGATGTTGAGAAATTGAGA+TGG | 0.590144 | 4.4:-20197788 | None:intergenic |
TGAGATGGTTGCTACTGCGT+TGG | 0.590363 | 4.4:+20198088 | MS.gene35079:CDS |
GAGGTCAATAAGAGGACTGG+AGG | 0.591483 | 4.4:+20198446 | MS.gene35079:CDS |
AGATCTTCAAGCATCGGACG+AGG | 0.598135 | 4.4:-20197813 | None:intergenic |
TCAATAAGTGCAGTGACTGC+TGG | 0.598945 | 4.4:+20198944 | MS.gene35079:CDS |
GCAAGTGGCAACCATTTGAA+AGG | 0.599069 | 4.4:+20199103 | MS.gene35079:CDS |
GGTTGAACGAAATAAACGGC+GGG | 0.599421 | 4.4:-20197705 | None:intergenic |
TCCTGAGACAGATATGTACC+TGG | 0.603561 | 4.4:+20199045 | MS.gene35079:CDS |
TAAGAAGGAGAATGACATGA+TGG | 0.614444 | 4.4:+20198643 | MS.gene35079:CDS |
TGGTGGGTTGGAGTTTCCTG+AGG | 0.614604 | 4.4:+20198373 | MS.gene35079:CDS |
CATTAATCCAACTGAAGTGG+AGG | 0.617261 | 4.4:+20198772 | MS.gene35079:CDS |
GGAGTTTCCTGAGGTTGCGG+TGG | 0.617381 | 4.4:+20198382 | MS.gene35079:CDS |
TGCTTGAAGATCTTGCTTCG+GGG | 0.618864 | 4.4:+20197823 | MS.gene35079:CDS |
AAATTGAGGAGATTGTTGAG+AGG | 0.621276 | 4.4:+20197988 | MS.gene35079:CDS |
AAGTCTGGTTCAGGAGCAAG+TGG | 0.621847 | 4.4:+20199088 | MS.gene35079:CDS |
GTATAAGAATGATGTTGATG+AGG | 0.625258 | 4.4:+20198427 | MS.gene35079:CDS |
CCATATATAATATGCTTGGG+AGG | 0.626100 | 4.4:-20199214 | None:intergenic |
GTTTACGATCTTTGTCGATG+AGG | 0.627835 | 4.4:-20197668 | None:intergenic |
GTCAAAGATCTTCGTAAACA+CGG | 0.631895 | 4.4:+20197630 | MS.gene35079:CDS |
CTGAACCAGACTTAGGAGCA+CGG | 0.640321 | 4.4:-20199078 | None:intergenic |
ATTTCACGGTCACCAGCAGA+CGG | 0.640573 | 4.4:-20197969 | None:intergenic |
ACAGACAGCTAGCTTTGGCA+AGG | 0.641417 | 4.4:+20198990 | MS.gene35079:CDS |
AGGTCAATAAGAGGACTGGA+GGG | 0.644829 | 4.4:+20198447 | MS.gene35079:CDS |
CCAAGCACATCATGAACCAA+CGG | 0.646610 | 4.4:-20198260 | None:intergenic |
CACGAAGCATTTGATGAATG+CGG | 0.648032 | 4.4:+20198511 | MS.gene35079:CDS |
ACATCTGAACTACTGAGGTG+GGG | 0.648073 | 4.4:-20199323 | None:intergenic |
GAACTTCTCGGTGTGCTGAG+AGG | 0.648753 | 4.4:+20198689 | MS.gene35079:CDS |
TCGAGCAGCTTACGTTGCTG+GGG | 0.660501 | 4.4:+20199269 | MS.gene35079:CDS |
TGATTGATAAAGCGATCGTG+AGG | 0.664290 | 4.4:-20197763 | None:intergenic |
CGTTACCTGAGCTGACTGAG+AGG | 0.681656 | 4.4:+20198540 | MS.gene35079:CDS |
ATCTCAGCCGGCCCACCACG+CGG | 0.684607 | 4.4:-20198071 | None:intergenic |
CATTCACATCTGAACTACTG+AGG | 0.684802 | 4.4:-20199328 | None:intergenic |
GACTGGAGGGAATCACGGTG+CGG | 0.708144 | 4.4:+20198460 | MS.gene35079:CDS |
AACGGCGCTGAGAGAGTGTG+AGG | 0.717344 | 4.4:+20198802 | MS.gene35079:CDS |
GAACCAGACTTAGGAGCACG+GGG | 0.729204 | 4.4:-20199076 | None:intergenic |
TGTTGGGTGAGATCAAGGAG+AGG | 0.746514 | 4.4:+20198603 | MS.gene35079:CDS |
TGGTTGAACGAAATAAACGG+CGG | 0.753853 | 4.4:-20197706 | None:intergenic |
CCGGTTATTAGGTGTCCGCG+TGG | 0.779586 | 4.4:+20198056 | MS.gene35079:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAATAATTTGTTTACTGA+AGG | + | chr4.4:20198140-20198159 | MS.gene35079:CDS | 15.0% |
! | AAAACAATTGCTTCCTTAAA+TGG | - | chr4.4:20199130-20199149 | None:intergenic | 25.0% |
! | AATTGGTTGAACGAAATAAA+CGG | - | chr4.4:20197712-20197731 | None:intergenic | 25.0% |
! | AGATCTTTGACATGAATTAA+TGG | - | chr4.4:20197621-20197640 | None:intergenic | 25.0% |
! | GTTCCATATATAATATGCTT+GGG | - | chr4.4:20199220-20199239 | None:intergenic | 25.0% |
!!! | AATAATTTGTTTACTGAAGG+TGG | + | chr4.4:20198143-20198162 | MS.gene35079:CDS | 25.0% |
!!! | ATAATTTGTTTACTGAAGGT+GGG | + | chr4.4:20198144-20198163 | MS.gene35079:CDS | 25.0% |
!!! | TGAGGATAATTTGTTTTCAT+TGG | + | chr4.4:20197914-20197933 | MS.gene35079:CDS | 25.0% |
ATTGTTGAGAGGATTGTTAA+TGG | + | chr4.4:20197999-20198018 | MS.gene35079:CDS | 30.0% | |
CATCATGTATCTGATTTCAT+CGG | + | chr4.4:20198745-20198764 | MS.gene35079:CDS | 30.0% | |
CGTTCCATATATAATATGCT+TGG | - | chr4.4:20199221-20199240 | None:intergenic | 30.0% | |
CTATCAAAAACACACAAAAC+CGG | - | chr4.4:20198194-20198213 | None:intergenic | 30.0% | |
GTATAAGAATGATGTTGATG+AGG | + | chr4.4:20198427-20198446 | MS.gene35079:CDS | 30.0% | |
TTGTTGAGAGGATTGTTAAT+GGG | + | chr4.4:20198000-20198019 | MS.gene35079:CDS | 30.0% | |
! | ATTTTGTTAGTTCGTTTCAG+AGG | + | chr4.4:20198168-20198187 | MS.gene35079:CDS | 30.0% |
! | CAGAAGTAATATTGTTGACT+GGG | + | chr4.4:20198901-20198920 | MS.gene35079:CDS | 30.0% |
! | GAAGCAATTGTTTTCATGAT+TGG | + | chr4.4:20199136-20199155 | MS.gene35079:CDS | 30.0% |
!!! | TAATGGGTTGTTTTGTGTTT+TGG | + | chr4.4:20198016-20198035 | MS.gene35079:CDS | 30.0% |
AAATTGAGGAGATTGTTGAG+AGG | + | chr4.4:20197988-20198007 | MS.gene35079:CDS | 35.0% | |
AACCATTAATCCAACTGAAG+TGG | + | chr4.4:20198769-20198788 | MS.gene35079:CDS | 35.0% | |
AACCTAAACCAACCAATAAC+AGG | + | chr4.4:20197522-20197541 | MS.gene35079:CDS | 35.0% | |
AGAATGACATGATGGTTAGA+GGG | + | chr4.4:20198651-20198670 | MS.gene35079:CDS | 35.0% | |
ATTGAAAGGAGTGAACTTCT+CGG | + | chr4.4:20198677-20198696 | MS.gene35079:CDS | 35.0% | |
CAACAATCTCCTCAATTTCA+CGG | - | chr4.4:20197986-20198005 | None:intergenic | 35.0% | |
CCATATATAATATGCTTGGG+AGG | - | chr4.4:20199217-20199236 | None:intergenic | 35.0% | |
CCATTTGAAAGGTCCATTTA+AGG | + | chr4.4:20199114-20199133 | MS.gene35079:CDS | 35.0% | |
CCTCCCAAGCATATTATATA+TGG | + | chr4.4:20199214-20199233 | MS.gene35079:CDS | 35.0% | |
CCTTAAATGGACCTTTCAAA+TGG | - | chr4.4:20199117-20199136 | None:intergenic | 35.0% | |
CGATGAAATCAGATACATGA+TGG | - | chr4.4:20198747-20198766 | None:intergenic | 35.0% | |
GACAGAATTTGTCGTAGATA+AGG | - | chr4.4:20197584-20197603 | None:intergenic | 35.0% | |
GCAGAAGTAATATTGTTGAC+TGG | + | chr4.4:20198900-20198919 | MS.gene35079:CDS | 35.0% | |
GCTTGATTCATATGCTAAGA+AGG | + | chr4.4:20198628-20198647 | MS.gene35079:CDS | 35.0% | |
GTCAAAGATCTTCGTAAACA+CGG | + | chr4.4:20197630-20197649 | MS.gene35079:CDS | 35.0% | |
TAACATTGCTACTGTGTTGT+TGG | + | chr4.4:20198586-20198605 | MS.gene35079:CDS | 35.0% | |
TAAGAAGGAGAATGACATGA+TGG | + | chr4.4:20198643-20198662 | MS.gene35079:CDS | 35.0% | |
TAAGTCTCTGAATGTTTCGT+TGG | + | chr4.4:20198859-20198878 | MS.gene35079:CDS | 35.0% | |
TACATATCTGTCTCAGGATT+TGG | - | chr4.4:20199043-20199062 | None:intergenic | 35.0% | |
TCGATGTTGAGAAATTGAGA+TGG | - | chr4.4:20197791-20197810 | None:intergenic | 35.0% | |
TTCAGCATGACTTTAGGTAT+AGG | + | chr4.4:20198237-20198256 | MS.gene35079:CDS | 35.0% | |
TTCGATTCAGCGAATTTCAA+AGG | + | chr4.4:20197860-20197879 | MS.gene35079:CDS | 35.0% | |
! | AACATTGCTACTGTGTTGTT+GGG | + | chr4.4:20198587-20198606 | MS.gene35079:CDS | 35.0% |
! | ATGTTGATGAGGTCAATAAG+AGG | + | chr4.4:20198438-20198457 | MS.gene35079:CDS | 35.0% |
! | ATTGTTTTCATGATTGGTGG+TGG | + | chr4.4:20199142-20199161 | MS.gene35079:CDS | 35.0% |
! | GCAATTGTTTTCATGATTGG+TGG | + | chr4.4:20199139-20199158 | MS.gene35079:CDS | 35.0% |
! | GTTGTTGTTGTTCCTGTTAT+TGG | - | chr4.4:20197537-20197556 | None:intergenic | 35.0% |
! | TGAATAGGTTGAGTGTTCAA+GGG | + | chr4.4:20198291-20198310 | MS.gene35079:CDS | 35.0% |
! | TTGAATAGGTTGAGTGTTCA+AGG | + | chr4.4:20198290-20198309 | MS.gene35079:CDS | 35.0% |
! | TTGCTATTCAGCATGACTTT+AGG | + | chr4.4:20198231-20198250 | MS.gene35079:CDS | 35.0% |
! | TTGTTGTTCCTGTTATTGGT+TGG | - | chr4.4:20197533-20197552 | None:intergenic | 35.0% |
!! | CGGTTTTGTGTGTTTTTGAT+AGG | + | chr4.4:20198192-20198211 | MS.gene35079:CDS | 35.0% |
!! | TCTTGAGTTTGTTACACTTG+AGG | + | chr4.4:20197896-20197915 | MS.gene35079:CDS | 35.0% |
!! | TTCCTGTTATTGGTTGGTTT+AGG | - | chr4.4:20197527-20197546 | None:intergenic | 35.0% |
AAGTCATGCTGAATAGCAAC+CGG | - | chr4.4:20198230-20198249 | None:intergenic | 40.0% | |
AATCTTAATGATCCGTCTGC+TGG | + | chr4.4:20197957-20197976 | MS.gene35079:CDS | 40.0% | |
ACTGTTGAAGCCTTGATTGA+AGG | + | chr4.4:20199013-20199032 | MS.gene35079:CDS | 40.0% | |
ATGCTTGAAGATCTTGCTTC+GGG | + | chr4.4:20197822-20197841 | MS.gene35079:CDS | 40.0% | |
ATTTGGTCTCCCTTCAATCA+AGG | - | chr4.4:20199026-20199045 | None:intergenic | 40.0% | |
CATTAATCCAACTGAAGTGG+AGG | + | chr4.4:20198772-20198791 | MS.gene35079:CDS | 40.0% | |
CTCCACTTCAGTTGGATTAA+TGG | - | chr4.4:20198774-20198793 | None:intergenic | 40.0% | |
CTGTTGAAGCCTTGATTGAA+GGG | + | chr4.4:20199014-20199033 | MS.gene35079:CDS | 40.0% | |
GAAGCAAGATCTTCAAGCAT+CGG | - | chr4.4:20197822-20197841 | None:intergenic | 40.0% | |
GAGAATGACATGATGGTTAG+AGG | + | chr4.4:20198650-20198669 | MS.gene35079:CDS | 40.0% | |
GATGCTTGAAGATCTTGCTT+CGG | + | chr4.4:20197821-20197840 | MS.gene35079:CDS | 40.0% | |
GTTTACGATCTTTGTCGATG+AGG | - | chr4.4:20197671-20197690 | None:intergenic | 40.0% | |
TGATTGATAAAGCGATCGTG+AGG | - | chr4.4:20197766-20197785 | None:intergenic | 40.0% | |
TGCGTTGGATCAAAGGATTA+GGG | + | chr4.4:20198103-20198122 | MS.gene35079:CDS | 40.0% | |
TGGGATGAGATCTTATGAGT+TGG | + | chr4.4:20198322-20198341 | MS.gene35079:CDS | 40.0% | |
TGGTTGAACGAAATAAACGG+CGG | - | chr4.4:20197709-20197728 | None:intergenic | 40.0% | |
! | AAGATGGGTTTGGGTAATGT+TGG | + | chr4.4:20199295-20199314 | MS.gene35079:CDS | 40.0% |
! | CACGAAGCATTTGATGAATG+CGG | + | chr4.4:20198511-20198530 | MS.gene35079:CDS | 40.0% |
! | GAATAGGTTGAGTGTTCAAG+GGG | + | chr4.4:20198292-20198311 | MS.gene35079:CDS | 40.0% |
! | TGATAGGAATTTTGAGCTGC+CGG | + | chr4.4:20198208-20198227 | MS.gene35079:CDS | 40.0% |
! | TTTGATGGGACGGATTTGAT+TGG | + | chr4.4:20198485-20198504 | MS.gene35079:CDS | 40.0% |
!! | GACAGAACTTTTGACTGGAA+TGG | + | chr4.4:20199240-20199259 | MS.gene35079:CDS | 40.0% |
!! | TGCTTGGGTTGAAGTTGAAT+AGG | + | chr4.4:20198276-20198295 | MS.gene35079:CDS | 40.0% |
!!! | GATTCGTTTTGGGTTGCAAA+TGG | + | chr4.4:20198353-20198372 | MS.gene35079:CDS | 40.0% |
!!! | GGATAGTGCTGATTCGTTTT+GGG | + | chr4.4:20198343-20198362 | MS.gene35079:CDS | 40.0% |
!!! | TGGATAGTGCTGATTCGTTT+TGG | + | chr4.4:20198342-20198361 | MS.gene35079:CDS | 40.0% |
!!! | TTTTGTGTTTTGGCTACGCT+TGG | + | chr4.4:20198026-20198045 | MS.gene35079:CDS | 40.0% |
AGGTCAATAAGAGGACTGGA+GGG | + | chr4.4:20198447-20198466 | MS.gene35079:CDS | 45.0% | |
CCAAGCACATCATGAACCAA+CGG | - | chr4.4:20198263-20198282 | None:intergenic | 45.0% | |
CGCTGAACGTTGGATTGAAT+TGG | - | chr4.4:20197729-20197748 | None:intergenic | 45.0% | |
CTGAATCGAATCCGAAGCTA+TGG | - | chr4.4:20197850-20197869 | None:intergenic | 45.0% | |
CTGCGTTGGATCAAAGGATT+AGG | + | chr4.4:20198102-20198121 | MS.gene35079:CDS | 45.0% | |
GATGAGGTCAATAAGAGGAC+TGG | + | chr4.4:20198443-20198462 | MS.gene35079:CDS | 45.0% | |
GCAAGTGGCAACCATTTGAA+AGG | + | chr4.4:20199103-20199122 | MS.gene35079:CDS | 45.0% | |
GGTTGAACGAAATAAACGGC+GGG | - | chr4.4:20197708-20197727 | None:intergenic | 45.0% | |
TCAATAAGTGCAGTGACTGC+TGG | + | chr4.4:20198944-20198963 | MS.gene35079:CDS | 45.0% | |
TCCTGAGACAGATATGTACC+TGG | + | chr4.4:20199045-20199064 | MS.gene35079:CDS | 45.0% | |
TGACTGTCCATAGAGCTTCT+CGG | - | chr4.4:20198927-20198946 | None:intergenic | 45.0% | |
TGACTTTAGGTATAGGCCGT+TGG | + | chr4.4:20198244-20198263 | MS.gene35079:CDS | 45.0% | |
TGCTTGAAGATCTTGCTTCG+GGG | + | chr4.4:20197823-20197842 | MS.gene35079:CDS | 45.0% | |
TGTTAGTTCGTTTCAGAGGC+CGG | + | chr4.4:20198172-20198191 | MS.gene35079:CDS | 45.0% | |
TTGAGTGTTCAAGGGGAGAA+AGG | + | chr4.4:20198299-20198318 | MS.gene35079:CDS | 45.0% | |
TTGCTACTGCGTTGGATCAA+AGG | + | chr4.4:20198096-20198115 | MS.gene35079:CDS | 45.0% | |
! | GGAACGACAGAACTTTTGAC+TGG | + | chr4.4:20199235-20199254 | MS.gene35079:CDS | 45.0% |
! | TAGTGACAGACAGCTAGCTT+TGG | + | chr4.4:20198985-20199004 | MS.gene35079:CDS | 45.0% |
! | TGTGTTGTTGGGTGAGATCA+AGG | + | chr4.4:20198598-20198617 | MS.gene35079:CDS | 45.0% |
!! | CGTTGGTTCATGATGTGCTT+GGG | + | chr4.4:20198261-20198280 | MS.gene35079:CDS | 45.0% |
!! | TGGTTAGAGGGAGCATTGAA+AGG | + | chr4.4:20198663-20198682 | MS.gene35079:CDS | 45.0% |
!! | TTGGTGTTGTGCCGGTTATT+AGG | + | chr4.4:20198045-20198064 | MS.gene35079:CDS | 45.0% |
!!! | CGTTTTGGGTTGCAAATGGT+GGG | + | chr4.4:20198357-20198376 | MS.gene35079:CDS | 45.0% |
!!! | TCGTTTTGGGTTGCAAATGG+TGG | + | chr4.4:20198356-20198375 | MS.gene35079:CDS | 45.0% |
AAGAGGACTGGAGGGAATCA+CGG | + | chr4.4:20198455-20198474 | MS.gene35079:CDS | 50.0% | |
AATCACGGTGCGGAGTTTGA+TGG | + | chr4.4:20198470-20198489 | MS.gene35079:CDS | 50.0% | |
ACGTTGCTGGGGAAGAAGAT+GGG | + | chr4.4:20199280-20199299 | MS.gene35079:CDS | 50.0% | |
AGTGTTCAAGGGGAGAAAGG+TGG | + | chr4.4:20198302-20198321 | MS.gene35079:CDS | 50.0% | |
ATCACGGTGCGGAGTTTGAT+GGG | + | chr4.4:20198471-20198490 | MS.gene35079:CDS | 50.0% | |
ATTTCACGGTCACCAGCAGA+CGG | - | chr4.4:20197972-20197991 | None:intergenic | 50.0% | |
CTGAACCAGACTTAGGAGCA+CGG | - | chr4.4:20199081-20199100 | None:intergenic | 50.0% | |
CTTGCTCCTGAACCAGACTT+AGG | - | chr4.4:20199088-20199107 | None:intergenic | 50.0% | |
GAGGTCAATAAGAGGACTGG+AGG | + | chr4.4:20198446-20198465 | MS.gene35079:CDS | 50.0% | |
GCCAGGTACATATCTGTCTC+AGG | - | chr4.4:20199049-20199068 | None:intergenic | 50.0% | |
GTGTTCAAGGGGAGAAAGGT+GGG | + | chr4.4:20198303-20198322 | MS.gene35079:CDS | 50.0% | |
GTTGGAGTTTCCTGAGGTTG+CGG | + | chr4.4:20198379-20198398 | MS.gene35079:CDS | 50.0% | |
TACGTTGCTGGGGAAGAAGA+TGG | + | chr4.4:20199279-20199298 | MS.gene35079:CDS | 50.0% | |
TGAAGTGGAGGCTGTGGAAA+CGG | + | chr4.4:20198784-20198803 | MS.gene35079:CDS | 50.0% | |
TGAGATGGTTGCTACTGCGT+TGG | + | chr4.4:20198088-20198107 | MS.gene35079:CDS | 50.0% | |
TGCGATGATTCGCTGAACGT+TGG | - | chr4.4:20197739-20197758 | None:intergenic | 50.0% | |
TGCTGGTGACCGTGAAATTG+AGG | + | chr4.4:20197974-20197993 | MS.gene35079:CDS | 50.0% | |
TGTTGGGTGAGATCAAGGAG+AGG | + | chr4.4:20198603-20198622 | MS.gene35079:CDS | 50.0% | |
TTATTAGGTGTCCGCGTGGT+GGG | + | chr4.4:20198060-20198079 | MS.gene35079:CDS | 50.0% | |
! | AACTTCTCGGTGTGCTGAGA+GGG | + | chr4.4:20198690-20198709 | MS.gene35079:CDS | 50.0% |
! | AAGTCTGGTTCAGGAGCAAG+TGG | + | chr4.4:20199088-20199107 | MS.gene35079:CDS | 50.0% |
! | CTGGGGAAGAAGATGGGTTT+GGG | + | chr4.4:20199286-20199305 | MS.gene35079:CDS | 50.0% |
! | TGAACCAGACTTAGGAGCAC+GGG | - | chr4.4:20199080-20199099 | None:intergenic | 50.0% |
!! | ACAGACAGCTAGCTTTGGCA+AGG | + | chr4.4:20198990-20199009 | MS.gene35079:CDS | 50.0% |
!! | AGATCTTCAAGCATCGGACG+AGG | - | chr4.4:20197816-20197835 | None:intergenic | 50.0% |
!! | CCGTTGGTTCATGATGTGCT+TGG | + | chr4.4:20198260-20198279 | MS.gene35079:CDS | 50.0% |
!! | TTGGGTTGCAAATGGTGGGT+TGG | + | chr4.4:20198361-20198380 | MS.gene35079:CDS | 50.0% |
AACGGCGGGAACATCGTGAA+CGG | - | chr4.4:20197694-20197713 | None:intergenic | 55.0% | |
CCACGCGGACACCTAATAAC+CGG | - | chr4.4:20198059-20198078 | None:intergenic | 55.0% | |
CGTTACCTGAGCTGACTGAG+AGG | + | chr4.4:20198540-20198559 | MS.gene35079:CDS | 55.0% | |
GAGAGGGAAGGGAACGAAGA+TGG | + | chr4.4:20198706-20198725 | MS.gene35079:CDS | 55.0% | |
GCAGTAGCAACCATCTCAGC+CGG | - | chr4.4:20198086-20198105 | None:intergenic | 55.0% | |
GTCGAGCAGCTTACGTTGCT+GGG | + | chr4.4:20199268-20199287 | MS.gene35079:CDS | 55.0% | |
GTTATTAGGTGTCCGCGTGG+TGG | + | chr4.4:20198059-20198078 | MS.gene35079:CDS | 55.0% | |
TCAATCTCCACCGCAACCTC+AGG | - | chr4.4:20198392-20198411 | None:intergenic | 55.0% | |
TCCAACTGAAGTGGAGGCTG+TGG | + | chr4.4:20198778-20198797 | MS.gene35079:CDS | 55.0% | |
TCCACAGCCTCCACTTCAGT+TGG | - | chr4.4:20198782-20198801 | None:intergenic | 55.0% | |
TCGAGCAGCTTACGTTGCTG+GGG | + | chr4.4:20199269-20199288 | MS.gene35079:CDS | 55.0% | |
TGCTTCCTCTCAGTCAGCTC+AGG | - | chr4.4:20198548-20198567 | None:intergenic | 55.0% | |
TGCTTCGGGGACCATAGCTT+CGG | + | chr4.4:20197836-20197855 | MS.gene35079:CDS | 55.0% | |
TGTCGAGCAGCTTACGTTGC+TGG | + | chr4.4:20199267-20199286 | MS.gene35079:CDS | 55.0% | |
! | CGTGCTCCTAAGTCTGGTTC+AGG | + | chr4.4:20199079-20199098 | MS.gene35079:CDS | 55.0% |
! | GAACCAGACTTAGGAGCACG+GGG | - | chr4.4:20199079-20199098 | None:intergenic | 55.0% |
! | GAACTTCTCGGTGTGCTGAG+AGG | + | chr4.4:20198689-20198708 | MS.gene35079:CDS | 55.0% |
! | GCTGGGGAAGAAGATGGGTT+TGG | + | chr4.4:20199285-20199304 | MS.gene35079:CDS | 55.0% |
!! | TGGTGGGTTGGAGTTTCCTG+AGG | + | chr4.4:20198373-20198392 | MS.gene35079:CDS | 55.0% |
ACGGCGGGAACATCGTGAAC+GGG | - | chr4.4:20197693-20197712 | None:intergenic | 60.0% | |
CCGGTTATTAGGTGTCCGCG+TGG | + | chr4.4:20198056-20198075 | MS.gene35079:CDS | 60.0% | |
CGGTGCGGAGTTTGATGGGA+CGG | + | chr4.4:20198475-20198494 | MS.gene35079:CDS | 60.0% | |
GACTGGAGGGAATCACGGTG+CGG | + | chr4.4:20198460-20198479 | MS.gene35079:CDS | 60.0% | |
GACTGGGCCGAGAAGCTCTA+TGG | + | chr4.4:20198917-20198936 | MS.gene35079:CDS | 60.0% | |
GAGCACGGGGATCAAAAGCC+AGG | - | chr4.4:20199066-20199085 | None:intergenic | 60.0% | |
GATCCCCGTGCTCCTAAGTC+TGG | + | chr4.4:20199073-20199092 | MS.gene35079:CDS | 60.0% | |
GGAGTTTCCTGAGGTTGCGG+TGG | + | chr4.4:20198382-20198401 | MS.gene35079:CDS | 60.0% | |
! | AACGGCGCTGAGAGAGTGTG+AGG | + | chr4.4:20198802-20198821 | MS.gene35079:CDS | 60.0% |
! | CTCGGTGTGCTGAGAGGGAA+GGG | + | chr4.4:20198695-20198714 | MS.gene35079:CDS | 60.0% |
! | TCTCGGTGTGCTGAGAGGGA+AGG | + | chr4.4:20198694-20198713 | MS.gene35079:CDS | 60.0% |
!! | GGCTACGCTTGGTGTTGTGC+CGG | + | chr4.4:20198037-20198056 | MS.gene35079:CDS | 60.0% |
ATCTCAGCCGGCCCACCACG+CGG | - | chr4.4:20198074-20198093 | None:intergenic | 70.0% | |
!! | TAGGTGTCCGCGTGGTGGGC+CGG | + | chr4.4:20198064-20198083 | MS.gene35079:CDS | 70.0% |
!! | GCGTGGTGGGCCGGCTGAGA+TGG | + | chr4.4:20198073-20198092 | MS.gene35079:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 20197516 | 20199336 | 20197516 | ID=MS.gene35079 |
chr4.4 | mRNA | 20197516 | 20199336 | 20197516 | ID=MS.gene35079.t1;Parent=MS.gene35079 |
chr4.4 | exon | 20197516 | 20199336 | 20197516 | ID=MS.gene35079.t1.exon1;Parent=MS.gene35079.t1 |
chr4.4 | CDS | 20197516 | 20199336 | 20197516 | ID=cds.MS.gene35079.t1;Parent=MS.gene35079.t1 |
Gene Sequence |
Protein sequence |