Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35126.t1 | RHN62838.1 | 90.2 | 427 | 33 | 2 | 1 | 426 | 23 | 441 | 1.10E-230 | 808.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35126.t1 | A0A072UPU9 | 90.2 | 427 | 33 | 2 | 1 | 426 | 1 | 419 | 8.2e-231 | 808.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052053 | MS.gene35126 | 0.823655 | 1.23E-53 | -1.69E-46 |
| MS.gene055550 | MS.gene35126 | 0.806156 | 9.43E-50 | -1.69E-46 |
| MS.gene056185 | MS.gene35126 | 0.806104 | 9.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35126.t1 | MTR_4g094562 | 90.164 | 427 | 33 | 2 | 1 | 426 | 1 | 419 | 0.0 | 795 |
| MS.gene35126.t1 | MTR_4g094550 | 84.149 | 429 | 66 | 2 | 1 | 427 | 1 | 429 | 0.0 | 746 |
| MS.gene35126.t1 | MTR_4g094555 | 82.989 | 435 | 73 | 1 | 1 | 434 | 1 | 435 | 0.0 | 744 |
| MS.gene35126.t1 | MTR_4g094548 | 82.791 | 430 | 72 | 2 | 7 | 434 | 8 | 437 | 0.0 | 738 |
| MS.gene35126.t1 | MTR_4g094570 | 81.280 | 422 | 79 | 0 | 7 | 428 | 8 | 429 | 0.0 | 722 |
| MS.gene35126.t1 | MTR_4g094560 | 80.690 | 435 | 73 | 2 | 1 | 434 | 1 | 425 | 0.0 | 713 |
| MS.gene35126.t1 | MTR_6g048350 | 77.726 | 431 | 95 | 1 | 1 | 430 | 1 | 431 | 0.0 | 706 |
| MS.gene35126.t1 | MTR_6g048310 | 77.412 | 425 | 90 | 3 | 3 | 426 | 2 | 421 | 0.0 | 667 |
| MS.gene35126.t1 | MTR_4g094562 | 89.189 | 296 | 31 | 1 | 1 | 295 | 1 | 296 | 0.0 | 555 |
| MS.gene35126.t1 | MTR_2g030460 | 60.391 | 409 | 152 | 4 | 9 | 415 | 12 | 412 | 0.0 | 534 |
| MS.gene35126.t1 | MTR_4g094565 | 65.268 | 429 | 67 | 4 | 1 | 428 | 1 | 348 | 0.0 | 531 |
| MS.gene35126.t1 | MTR_2g030470 | 58.237 | 431 | 167 | 3 | 9 | 434 | 15 | 437 | 0.0 | 528 |
| MS.gene35126.t1 | MTR_2g030470 | 58.473 | 419 | 162 | 3 | 1 | 415 | 416 | 826 | 2.80e-178 | 519 |
| MS.gene35126.t1 | MTR_1g052640 | 59.524 | 420 | 157 | 4 | 1 | 415 | 1 | 412 | 0.0 | 527 |
| MS.gene35126.t1 | MTR_0083s0100 | 63.021 | 384 | 133 | 2 | 33 | 415 | 37 | 412 | 0.0 | 526 |
| MS.gene35126.t1 | MTR_2g030480 | 57.041 | 419 | 148 | 4 | 1 | 415 | 1 | 391 | 4.17e-174 | 493 |
| MS.gene35126.t1 | MTR_2g030460 | 58.610 | 331 | 127 | 4 | 9 | 337 | 12 | 334 | 4.36e-146 | 419 |
| MS.gene35126.t1 | MTR_1g052640 | 57.895 | 342 | 131 | 4 | 1 | 337 | 1 | 334 | 9.91e-144 | 414 |
| MS.gene35126.t1 | MTR_4g094565 | 72.378 | 286 | 50 | 3 | 1 | 285 | 1 | 258 | 2.92e-141 | 406 |
| MS.gene35126.t1 | MTR_8g039300 | 44.524 | 420 | 210 | 8 | 1 | 411 | 1 | 406 | 5.24e-130 | 381 |
| MS.gene35126.t1 | MTR_6g089930 | 41.966 | 417 | 221 | 7 | 1 | 409 | 1 | 404 | 7.75e-125 | 368 |
| MS.gene35126.t1 | MTR_6g090090 | 43.405 | 417 | 205 | 8 | 1 | 409 | 27 | 420 | 3.71e-124 | 367 |
| MS.gene35126.t1 | MTR_3g035040 | 43.237 | 414 | 213 | 8 | 7 | 412 | 8 | 407 | 8.03e-122 | 360 |
| MS.gene35126.t1 | MTR_1g052640 | 56.897 | 290 | 112 | 4 | 1 | 285 | 1 | 282 | 1.79e-117 | 345 |
| MS.gene35126.t1 | MTR_1g035220 | 40.816 | 392 | 189 | 8 | 1 | 383 | 1 | 358 | 2.81e-104 | 314 |
| MS.gene35126.t1 | MTR_1g062750 | 40.586 | 239 | 127 | 4 | 57 | 286 | 2 | 234 | 1.21e-65 | 210 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35126.t1 | AT5G61820 | 57.971 | 414 | 150 | 9 | 13 | 411 | 15 | 419 | 9.05e-165 | 472 |
| MS.gene35126.t1 | AT5G61820 | 57.971 | 414 | 150 | 9 | 13 | 411 | 15 | 419 | 9.05e-165 | 472 |
Find 111 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTACTCCAGTGTGTTCT+TGG | 0.254712 | 4.4:-19666214 | None:intergenic |
| CAGAAGGGTCCGAGGATAAA+TGG | 0.264972 | 4.4:+19664913 | MS.gene35126:CDS |
| ATCTAAGATACACAGTAAAA+TGG | 0.267275 | 4.4:+19665138 | MS.gene35126:CDS |
| CCAGGTCCTAACTCAAATTT+CGG | 0.276410 | 4.4:-19664540 | None:intergenic |
| CAGGTCCTAACTCAAATTTC+GGG | 0.297932 | 4.4:-19664539 | None:intergenic |
| GGAATTGGATCCACCCTATA+TGG | 0.332124 | 4.4:+19665704 | MS.gene35126:CDS |
| TGGAAATTACCTGTCCATAT+AGG | 0.336191 | 4.4:-19665718 | None:intergenic |
| CAAGAACACACTGGAGTAAT+GGG | 0.339184 | 4.4:+19666215 | MS.gene35126:CDS |
| TGTTGCTGTTCCTCGTGTTT+CGG | 0.340641 | 4.4:-19664841 | None:intergenic |
| CATCAGCATTCAGGTGGAAT+TGG | 0.345957 | 4.4:+19665689 | MS.gene35126:CDS |
| GGAAATTACCTGTCCATATA+GGG | 0.348859 | 4.4:-19665717 | None:intergenic |
| TAAGTTTCATGGAGAGGTAT+AGG | 0.349623 | 4.4:-19664660 | None:intergenic |
| TCCATACCACGTTATGGAAA+TGG | 0.368210 | 4.4:+19666071 | MS.gene35126:CDS |
| GGTGTTGCACATCAGCATTC+AGG | 0.372185 | 4.4:+19665680 | MS.gene35126:CDS |
| CCAATACTTCTGCTATTGTT+TGG | 0.372768 | 4.4:+19664453 | MS.gene35126:CDS |
| ACACAGTAAAATGGGTTGAT+TGG | 0.378269 | 4.4:+19665147 | MS.gene35126:CDS |
| TTGTCCCCGAAATTTGAGTT+AGG | 0.383266 | 4.4:+19664534 | MS.gene35126:CDS |
| GAGTAGAATGTCTGAGTTGA+TGG | 0.383708 | 4.4:-19666274 | None:intergenic |
| TGAAACTTATCTCCATCATT+GGG | 0.386239 | 4.4:+19664674 | MS.gene35126:CDS |
| ATGAAACTTATCTCCATCAT+TGG | 0.388395 | 4.4:+19664673 | MS.gene35126:CDS |
| ATCTCTATACCGAAAGGTTC+CGG | 0.388605 | 4.4:-19664870 | None:intergenic |
| CGTGGCGTGGAGGATAAGTT+AGG | 0.394688 | 4.4:+19664963 | MS.gene35126:CDS |
| AATGTTACGGTGGATGAATA+TGG | 0.394757 | 4.4:+19665014 | MS.gene35126:CDS |
| TGTTCTTCCATACCACGTTA+TGG | 0.396127 | 4.4:+19666065 | MS.gene35126:CDS |
| GAGGAACAGTGGCATATGTC+AGG | 0.396372 | 4.4:+19664785 | MS.gene35126:CDS |
| AATGATGGAGATAAGTTTCA+TGG | 0.396431 | 4.4:-19664671 | None:intergenic |
| CTTAGATAGAGGCTTCTCTT+TGG | 0.397938 | 4.4:-19665122 | None:intergenic |
| CACAGTAAAATGGGTTGATT+GGG | 0.401945 | 4.4:+19665148 | MS.gene35126:CDS |
| TCAATTATATATATCTTAAC+AGG | 0.405782 | 4.4:-19665185 | None:intergenic |
| ACTGGTGGCTATGTGATCTA+TGG | 0.406576 | 4.4:+19665659 | MS.gene35126:CDS |
| ACAGATATTCCGGAACCTTT+CGG | 0.411010 | 4.4:+19664861 | MS.gene35126:CDS |
| ATGAATATGGAAGGTCTATA+AGG | 0.411102 | 4.4:+19665027 | MS.gene35126:CDS |
| TTACTGTGTATCTTAGATAG+AGG | 0.415894 | 4.4:-19665133 | None:intergenic |
| ACATAGCCACCAGTTTGAAA+TGG | 0.422102 | 4.4:-19665650 | None:intergenic |
| AGGAACAGCAACAGATATTC+CGG | 0.425269 | 4.4:+19664851 | MS.gene35126:CDS |
| AATACTCTTGGACAATACTT+TGG | 0.427743 | 4.4:+19664810 | MS.gene35126:CDS |
| TCTATAAGGCCAGATTATAA+AGG | 0.432793 | 4.4:+19665041 | MS.gene35126:CDS |
| CCGAAATTTGAGTTAGGACC+TGG | 0.436301 | 4.4:+19664540 | MS.gene35126:CDS |
| AACCAACCTCCTTTATAATC+TGG | 0.436373 | 4.4:-19665050 | None:intergenic |
| CAGAACTTGGAAGCATCCTT+TGG | 0.438906 | 4.4:-19664749 | None:intergenic |
| CTTGGACAATACTTTGGCAT+TGG | 0.442628 | 4.4:+19664816 | MS.gene35126:CDS |
| TCAATTATCGTGACGGAACC+TGG | 0.451783 | 4.4:-19666152 | None:intergenic |
| TTGAGTGCAATATGACCTCT+TGG | 0.455360 | 4.4:-19664600 | None:intergenic |
| CCAAGAACACACTGGAGTAA+TGG | 0.458171 | 4.4:+19666214 | MS.gene35126:CDS |
| ATCGTGACGGAACCTGGTTT+AGG | 0.460036 | 4.4:-19666146 | None:intergenic |
| TCCATTTCCATAACGTGGTA+TGG | 0.460705 | 4.4:-19666072 | None:intergenic |
| TCTAAGATACACAGTAAAAT+GGG | 0.465087 | 4.4:+19665139 | MS.gene35126:CDS |
| AATGAGACAGGCTACATTGT+AGG | 0.466676 | 4.4:+19666107 | MS.gene35126:CDS |
| GAACCTTTCGGTATAGAGAT+AGG | 0.466983 | 4.4:+19664873 | MS.gene35126:CDS |
| CTCCACGCCACGTGTATCAA+TGG | 0.468315 | 4.4:-19664952 | None:intergenic |
| CCAAACAATAGCAGAAGTAT+TGG | 0.474061 | 4.4:-19664453 | None:intergenic |
| GTTGCTGTTCTGCAACCAAT+AGG | 0.474536 | 4.4:-19666247 | None:intergenic |
| CATAGCCACCAGTTTGAAAT+GGG | 0.475271 | 4.4:-19665649 | None:intergenic |
| ATCTGATAGTTTCAAAGTAT+CGG | 0.483069 | 4.4:-19665213 | None:intergenic |
| TCTTTATTGATAACTGATCC+AGG | 0.484752 | 4.4:-19664558 | None:intergenic |
| GTGCGAGCTTTATAATGTTA+CGG | 0.488201 | 4.4:+19665001 | MS.gene35126:CDS |
| AAACTATCAGATAACTCAAA+AGG | 0.488445 | 4.4:+19665224 | MS.gene35126:CDS |
| ACAAGTCTCCCATTTCAAAC+TGG | 0.501575 | 4.4:+19665641 | MS.gene35126:CDS |
| TTGTACACAGTGCAAGTTGA+AGG | 0.504293 | 4.4:+19665085 | MS.gene35126:CDS |
| AGAAGGGTCCGAGGATAAAT+GGG | 0.505079 | 4.4:+19664914 | MS.gene35126:CDS |
| ATCTTGCAACACCCCAATGA+TGG | 0.507927 | 4.4:-19664686 | None:intergenic |
| GGCACTGAAAATACAAACTT+AGG | 0.511667 | 4.4:-19664432 | None:intergenic |
| GGTTCCGTCACGATAATTGA+TGG | 0.511998 | 4.4:+19666155 | MS.gene35126:CDS |
| ACTTTCACAATATCAGAACT+TGG | 0.512852 | 4.4:-19664762 | None:intergenic |
| GACCCTTCTGAAACCTCTGC+AGG | 0.513932 | 4.4:-19664900 | None:intergenic |
| ACAAACCACAAGGAGCGAAA+TGG | 0.515563 | 4.4:+19665599 | MS.gene35126:CDS |
| ATATGTCAGGGAAATACTCT+TGG | 0.523938 | 4.4:+19664798 | MS.gene35126:CDS |
| TATGGAAATGGAAACGAAGC+AGG | 0.525207 | 4.4:+19666083 | MS.gene35126:CDS |
| TTTCATGATTTCAGGATGGG+AGG | 0.525371 | 4.4:+19666036 | MS.gene35126:intron |
| CACAGCCATTTCGCTCCTTG+TGG | 0.529057 | 4.4:-19665604 | None:intergenic |
| GGCACACACACAAGAAATGA+TGG | 0.529439 | 4.4:+19664726 | MS.gene35126:CDS |
| GGCCAGATTATAAAGGAGGT+TGG | 0.552111 | 4.4:+19665048 | MS.gene35126:CDS |
| TGGATCCACCCTATATGGAC+AGG | 0.552599 | 4.4:+19665709 | MS.gene35126:CDS |
| AACGAAGCAGGAAATGAGAC+AGG | 0.557757 | 4.4:+19666095 | MS.gene35126:CDS |
| TTCATGATTTCAGGATGGGA+GGG | 0.563353 | 4.4:+19666037 | MS.gene35126:intron |
| GTGGCGTGGAGGATAAGTTA+GGG | 0.565799 | 4.4:+19664964 | MS.gene35126:CDS |
| ATGGCTGTGTTAATGTAAAG+AGG | 0.565801 | 4.4:+19665618 | MS.gene35126:CDS |
| TGCCATTGATACACGTGGCG+TGG | 0.583642 | 4.4:+19664950 | MS.gene35126:CDS |
| TTCACCATCAATTATCGTGA+CGG | 0.588512 | 4.4:-19666159 | None:intergenic |
| ATTAAGCACCCATTTATCCT+CGG | 0.597914 | 4.4:-19664922 | None:intergenic |
| TCGTTTCCATTTCCATAACG+TGG | 0.598819 | 4.4:-19666077 | None:intergenic |
| ACACAGTGCAAGTTGAAGGA+AGG | 0.600179 | 4.4:+19665089 | MS.gene35126:CDS |
| GAACTCTGATCATGATTGCA+AGG | 0.603932 | 4.4:+19665250 | MS.gene35126:CDS |
| TCAACTTGTTATCCTAAACC+AGG | 0.605101 | 4.4:+19666134 | MS.gene35126:CDS |
| AATCCTGCAGAGGTTTCAGA+AGG | 0.606888 | 4.4:+19664897 | MS.gene35126:CDS |
| GTTCTGATATTGTGAAAGTG+AGG | 0.613289 | 4.4:+19664766 | MS.gene35126:CDS |
| AGGAACAGTGGCATATGTCA+GGG | 0.613732 | 4.4:+19664786 | MS.gene35126:CDS |
| GCTGAAGTAGTTGATGATGC+TGG | 0.614547 | 4.4:+19664633 | MS.gene35126:CDS |
| GAATGTCTGAGTTGATGGTA+TGG | 0.615297 | 4.4:-19666269 | None:intergenic |
| TGGAGATAAGTTTCATGGAG+AGG | 0.630553 | 4.4:-19664666 | None:intergenic |
| AGTCTCCCATTTCAAACTGG+TGG | 0.630697 | 4.4:+19665644 | MS.gene35126:CDS |
| AATTACCTGTCCATATAGGG+TGG | 0.632679 | 4.4:-19665714 | None:intergenic |
| CATTGATACACGTGGCGTGG+AGG | 0.634415 | 4.4:+19664953 | MS.gene35126:CDS |
| ATCTTGCAGCACAAACCACA+AGG | 0.636798 | 4.4:+19665589 | MS.gene35126:CDS |
| AGATATCATCAAAATAAACA+TGG | 0.638852 | 4.4:+19664705 | MS.gene35126:CDS |
| ATAAGGCCAGATTATAAAGG+AGG | 0.643505 | 4.4:+19665044 | MS.gene35126:CDS |
| TTACGGTGGATGAATATGGA+AGG | 0.644081 | 4.4:+19665018 | MS.gene35126:CDS |
| TTACCTATCTCTATACCGAA+AGG | 0.645143 | 4.4:-19664876 | None:intergenic |
| AACAATAGCCAAGAACACAC+TGG | 0.645606 | 4.4:+19666206 | MS.gene35126:CDS |
| ACACAAGAAATGATGGCCAA+AGG | 0.645745 | 4.4:+19664733 | MS.gene35126:CDS |
| GTTGCACATCAGCATTCAGG+TGG | 0.648323 | 4.4:+19665683 | MS.gene35126:CDS |
| GGCATTGGATCCGAAACACG+AGG | 0.662444 | 4.4:+19664831 | MS.gene35126:CDS |
| AGAGATAGGTAATCCTGCAG+AGG | 0.665825 | 4.4:+19664887 | MS.gene35126:CDS |
| AGAGGTTTCAGAAGGGTCCG+AGG | 0.677663 | 4.4:+19664905 | MS.gene35126:CDS |
| GAAACTTATCTCCATCATTG+GGG | 0.685791 | 4.4:+19664675 | MS.gene35126:CDS |
| AAGAACACACTGGAGTAATG+GGG | 0.686123 | 4.4:+19666216 | MS.gene35126:CDS |
| AGGTCCTAACTCAAATTTCG+GGG | 0.694281 | 4.4:-19664538 | None:intergenic |
| CGAGCTTTATAATGTTACGG+TGG | 0.698006 | 4.4:+19665004 | MS.gene35126:CDS |
| GTTCATGCCATTGATACACG+TGG | 0.703873 | 4.4:+19664945 | MS.gene35126:CDS |
| ATCCTGCAGAGGTTTCAGAA+GGG | 0.717685 | 4.4:+19664898 | MS.gene35126:CDS |
| ATTGTGAAAGTGAGGAACAG+TGG | 0.726055 | 4.4:+19664774 | MS.gene35126:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATCTATCTTTAACTAA+TGG | - | chr4.4:19665741-19665760 | None:intergenic | 15.0% |
| !! | TATACTAATTCTTAAATAGT+TGG | + | chr4.4:19665757-19665776 | MS.gene35126:intron | 15.0% |
| !! | TCAATTATATATATCTTAAC+AGG | - | chr4.4:19665188-19665207 | None:intergenic | 15.0% |
| !! | AGATATCATCAAAATAAACA+TGG | + | chr4.4:19664705-19664724 | MS.gene35126:CDS | 20.0% |
| !! | ATGTTTAATTAACAAGCAAA+TGG | + | chr4.4:19665901-19665920 | MS.gene35126:intron | 20.0% |
| !! | TATTACATGAACAAATAGAA+GGG | - | chr4.4:19665860-19665879 | None:intergenic | 20.0% |
| !!! | TTGCTTGTTAATTAAACATT+TGG | - | chr4.4:19665900-19665919 | None:intergenic | 20.0% |
| ! | AAACTATCAGATAACTCAAA+AGG | + | chr4.4:19665224-19665243 | MS.gene35126:CDS | 25.0% |
| ! | AAATTGTGTTTCATGATTTC+AGG | + | chr4.4:19666028-19666047 | MS.gene35126:intron | 25.0% |
| ! | AGACAAACAAACTACAAATT+TGG | - | chr4.4:19665472-19665491 | None:intergenic | 25.0% |
| ! | ATCTGATAGTTTCAAAGTAT+CGG | - | chr4.4:19665216-19665235 | None:intergenic | 25.0% |
| ! | CTATTACATGAACAAATAGA+AGG | - | chr4.4:19665861-19665880 | None:intergenic | 25.0% |
| ! | GATTAAAGATGTATATGAGT+CGG | + | chr4.4:19665796-19665815 | MS.gene35126:intron | 25.0% |
| ! | TTCAAAAAAGAACTTAAGCA+TGG | - | chr4.4:19664483-19664502 | None:intergenic | 25.0% |
| !! | ATCTAAGATACACAGTAAAA+TGG | + | chr4.4:19665138-19665157 | MS.gene35126:CDS | 25.0% |
| !! | CATGTAATAGTTTTCAATTG+AGG | + | chr4.4:19665871-19665890 | MS.gene35126:intron | 25.0% |
| !! | TCTAAGATACACAGTAAAAT+GGG | + | chr4.4:19665139-19665158 | MS.gene35126:CDS | 25.0% |
| !! | TTTATATTTTGTGAACTGAC+TGG | - | chr4.4:19665331-19665350 | None:intergenic | 25.0% |
| !!! | TACTCGTTCTTCATTTTTTA+TGG | + | chr4.4:19666292-19666311 | MS.gene35126:CDS | 25.0% |
| !!! | TATGATATTGATTTTCCAAG+AGG | + | chr4.4:19664585-19664604 | MS.gene35126:CDS | 25.0% |
| AATACTCTTGGACAATACTT+TGG | + | chr4.4:19664810-19664829 | MS.gene35126:CDS | 30.0% | |
| ACTTTCACAATATCAGAACT+TGG | - | chr4.4:19664765-19664784 | None:intergenic | 30.0% | |
| ATATAACACTAGTCCATTGT+TGG | + | chr4.4:19665513-19665532 | MS.gene35126:intron | 30.0% | |
| ATGAAACTTATCTCCATCAT+TGG | + | chr4.4:19664673-19664692 | MS.gene35126:CDS | 30.0% | |
| ATGAATATGGAAGGTCTATA+AGG | + | chr4.4:19665027-19665046 | MS.gene35126:CDS | 30.0% | |
| TATAACACTAGTCCATTGTT+GGG | + | chr4.4:19665514-19665533 | MS.gene35126:intron | 30.0% | |
| TCTATAAGGCCAGATTATAA+AGG | + | chr4.4:19665041-19665060 | MS.gene35126:CDS | 30.0% | |
| TGAAACTTATCTCCATCATT+GGG | + | chr4.4:19664674-19664693 | MS.gene35126:CDS | 30.0% | |
| TGTGAATAATTAGCAGTTGA+GGG | + | chr4.4:19665924-19665943 | MS.gene35126:intron | 30.0% | |
| TTACTGTGTATCTTAGATAG+AGG | - | chr4.4:19665136-19665155 | None:intergenic | 30.0% | |
| ! | AATGATGGAGATAAGTTTCA+TGG | - | chr4.4:19664674-19664693 | None:intergenic | 30.0% |
| ! | TCTTTATTGATAACTGATCC+AGG | - | chr4.4:19664561-19664580 | None:intergenic | 30.0% |
| !! | TGCTTGTTTTCATTGTATAC+TGG | + | chr4.4:19665954-19665973 | MS.gene35126:intron | 30.0% |
| AAATACCGAGCTTGAAATCT+AGG | + | chr4.4:19665377-19665396 | MS.gene35126:intron | 35.0% | |
| AACCAACCTCCTTTATAATC+TGG | - | chr4.4:19665053-19665072 | None:intergenic | 35.0% | |
| AATGTTACGGTGGATGAATA+TGG | + | chr4.4:19665014-19665033 | MS.gene35126:CDS | 35.0% | |
| ATAAGGCCAGATTATAAAGG+AGG | + | chr4.4:19665044-19665063 | MS.gene35126:CDS | 35.0% | |
| ATATGTCAGGGAAATACTCT+TGG | + | chr4.4:19664798-19664817 | MS.gene35126:CDS | 35.0% | |
| ATGGCTGTGTTAATGTAAAG+AGG | + | chr4.4:19665618-19665637 | MS.gene35126:CDS | 35.0% | |
| ATTAAGCACCCATTTATCCT+CGG | - | chr4.4:19664925-19664944 | None:intergenic | 35.0% | |
| CCAATACTTCTGCTATTGTT+TGG | + | chr4.4:19664453-19664472 | MS.gene35126:CDS | 35.0% | |
| CTCATTATGATACCCAACAA+TGG | - | chr4.4:19665529-19665548 | None:intergenic | 35.0% | |
| GAAACTTATCTCCATCATTG+GGG | + | chr4.4:19664675-19664694 | MS.gene35126:CDS | 35.0% | |
| GGAAATTACCTGTCCATATA+GGG | - | chr4.4:19665720-19665739 | None:intergenic | 35.0% | |
| GTCAATGCATCAATGAATGT+TGG | + | chr4.4:19665298-19665317 | MS.gene35126:intron | 35.0% | |
| GTGTGAATAATTAGCAGTTG+AGG | + | chr4.4:19665923-19665942 | MS.gene35126:intron | 35.0% | |
| GTGTTTCATGATTTCAGGAT+GGG | + | chr4.4:19666033-19666052 | MS.gene35126:intron | 35.0% | |
| GTTCTGATATTGTGAAAGTG+AGG | + | chr4.4:19664766-19664785 | MS.gene35126:CDS | 35.0% | |
| TGGAAATTACCTGTCCATAT+AGG | - | chr4.4:19665721-19665740 | None:intergenic | 35.0% | |
| TGTGTTTCATGATTTCAGGA+TGG | + | chr4.4:19666032-19666051 | MS.gene35126:intron | 35.0% | |
| TTACCTATCTCTATACCGAA+AGG | - | chr4.4:19664879-19664898 | None:intergenic | 35.0% | |
| TTCACCATCAATTATCGTGA+CGG | - | chr4.4:19666162-19666181 | None:intergenic | 35.0% | |
| ! | AGATTTCAAGCTCGGTATTT+TGG | - | chr4.4:19665377-19665396 | None:intergenic | 35.0% |
| ! | CCAAACAATAGCAGAAGTAT+TGG | - | chr4.4:19664456-19664475 | None:intergenic | 35.0% |
| ! | GGCACTGAAAATACAAACTT+AGG | - | chr4.4:19664435-19664454 | None:intergenic | 35.0% |
| ! | GTGCGAGCTTTATAATGTTA+CGG | + | chr4.4:19665001-19665020 | MS.gene35126:CDS | 35.0% |
| ! | TAAGTTTCATGGAGAGGTAT+AGG | - | chr4.4:19664663-19664682 | None:intergenic | 35.0% |
| !! | AAGTTGAAGGAAGGTTTTGA+GGG | + | chr4.4:19665098-19665117 | MS.gene35126:CDS | 35.0% |
| !! | ACACAGTAAAATGGGTTGAT+TGG | + | chr4.4:19665147-19665166 | MS.gene35126:CDS | 35.0% |
| !! | CACAGTAAAATGGGTTGATT+GGG | + | chr4.4:19665148-19665167 | MS.gene35126:CDS | 35.0% |
| !! | TCAACTTGTTATCCTAAACC+AGG | + | chr4.4:19666134-19666153 | MS.gene35126:CDS | 35.0% |
| AACAATAGCCAAGAACACAC+TGG | + | chr4.4:19666206-19666225 | MS.gene35126:CDS | 40.0% | |
| AAGAACACACTGGAGTAATG+GGG | + | chr4.4:19666216-19666235 | MS.gene35126:CDS | 40.0% | |
| AATGAGACAGGCTACATTGT+AGG | + | chr4.4:19666107-19666126 | MS.gene35126:CDS | 40.0% | |
| AATTACCTGTCCATATAGGG+TGG | - | chr4.4:19665717-19665736 | None:intergenic | 40.0% | |
| AATTAGCAGTTGAGGGCTAT+CGG | + | chr4.4:19665931-19665950 | MS.gene35126:intron | 40.0% | |
| ACAAGTCTCCCATTTCAAAC+TGG | + | chr4.4:19665641-19665660 | MS.gene35126:CDS | 40.0% | |
| ACACAAGAAATGATGGCCAA+AGG | + | chr4.4:19664733-19664752 | MS.gene35126:CDS | 40.0% | |
| ACAGATATTCCGGAACCTTT+CGG | + | chr4.4:19664861-19664880 | MS.gene35126:CDS | 40.0% | |
| ACAGTCCTAGATTTCAAGCT+CGG | - | chr4.4:19665385-19665404 | None:intergenic | 40.0% | |
| ACATAGCCACCAGTTTGAAA+TGG | - | chr4.4:19665653-19665672 | None:intergenic | 40.0% | |
| AGATGTATATGAGTCGGACA+CGG | + | chr4.4:19665802-19665821 | MS.gene35126:intron | 40.0% | |
| AGGAACAGCAACAGATATTC+CGG | + | chr4.4:19664851-19664870 | MS.gene35126:CDS | 40.0% | |
| AGGTCCTAACTCAAATTTCG+GGG | - | chr4.4:19664541-19664560 | None:intergenic | 40.0% | |
| ATCTCTATACCGAAAGGTTC+CGG | - | chr4.4:19664873-19664892 | None:intergenic | 40.0% | |
| ATTGTGAAAGTGAGGAACAG+TGG | + | chr4.4:19664774-19664793 | MS.gene35126:CDS | 40.0% | |
| CAAGAACACACTGGAGTAAT+GGG | + | chr4.4:19666215-19666234 | MS.gene35126:CDS | 40.0% | |
| CAGACTGTTGGATCAAAGAT+CGG | - | chr4.4:19665408-19665427 | None:intergenic | 40.0% | |
| CAGGTCCTAACTCAAATTTC+GGG | - | chr4.4:19664542-19664561 | None:intergenic | 40.0% | |
| CCAGGTCCTAACTCAAATTT+CGG | - | chr4.4:19664543-19664562 | None:intergenic | 40.0% | |
| CTTAGATAGAGGCTTCTCTT+TGG | - | chr4.4:19665125-19665144 | None:intergenic | 40.0% | |
| CTTGGACAATACTTTGGCAT+TGG | + | chr4.4:19664816-19664835 | MS.gene35126:CDS | 40.0% | |
| GAACCTTTCGGTATAGAGAT+AGG | + | chr4.4:19664873-19664892 | MS.gene35126:CDS | 40.0% | |
| GAACTCTGATCATGATTGCA+AGG | + | chr4.4:19665250-19665269 | MS.gene35126:CDS | 40.0% | |
| TATGGAAATGGAAACGAAGC+AGG | + | chr4.4:19666083-19666102 | MS.gene35126:CDS | 40.0% | |
| TCCATACCACGTTATGGAAA+TGG | + | chr4.4:19666071-19666090 | MS.gene35126:CDS | 40.0% | |
| TCCATTTCCATAACGTGGTA+TGG | - | chr4.4:19666075-19666094 | None:intergenic | 40.0% | |
| TCGTTTCCATTTCCATAACG+TGG | - | chr4.4:19666080-19666099 | None:intergenic | 40.0% | |
| TGGAGATAAGTTTCATGGAG+AGG | - | chr4.4:19664669-19664688 | None:intergenic | 40.0% | |
| TGTTCTTCCATACCACGTTA+TGG | + | chr4.4:19666065-19666084 | MS.gene35126:CDS | 40.0% | |
| TTACGGTGGATGAATATGGA+AGG | + | chr4.4:19665018-19665037 | MS.gene35126:CDS | 40.0% | |
| TTCATGATTTCAGGATGGGA+GGG | + | chr4.4:19666037-19666056 | MS.gene35126:intron | 40.0% | |
| TTGAGTGCAATATGACCTCT+TGG | - | chr4.4:19664603-19664622 | None:intergenic | 40.0% | |
| TTTCATGATTTCAGGATGGG+AGG | + | chr4.4:19666036-19666055 | MS.gene35126:intron | 40.0% | |
| ! | AATGGGGCTTTTCTACCTAT+TGG | + | chr4.4:19666232-19666251 | MS.gene35126:CDS | 40.0% |
| ! | CATAGCCACCAGTTTGAAAT+GGG | - | chr4.4:19665652-19665671 | None:intergenic | 40.0% |
| ! | CGAGCTTTATAATGTTACGG+TGG | + | chr4.4:19665004-19665023 | MS.gene35126:CDS | 40.0% |
| ! | GAGTAGAATGTCTGAGTTGA+TGG | - | chr4.4:19666277-19666296 | None:intergenic | 40.0% |
| ! | TTGTACACAGTGCAAGTTGA+AGG | + | chr4.4:19665085-19665104 | MS.gene35126:CDS | 40.0% |
| ! | TTGTCCCCGAAATTTGAGTT+AGG | + | chr4.4:19664534-19664553 | MS.gene35126:CDS | 40.0% |
| !! | CAAGTTGAAGGAAGGTTTTG+AGG | + | chr4.4:19665097-19665116 | MS.gene35126:CDS | 40.0% |
| !! | GAATGTCTGAGTTGATGGTA+TGG | - | chr4.4:19666272-19666291 | None:intergenic | 40.0% |
| AACGAAGCAGGAAATGAGAC+AGG | + | chr4.4:19666095-19666114 | MS.gene35126:CDS | 45.0% | |
| AATCCTGCAGAGGTTTCAGA+AGG | + | chr4.4:19664897-19664916 | MS.gene35126:CDS | 45.0% | |
| ACAAACCACAAGGAGCGAAA+TGG | + | chr4.4:19665599-19665618 | MS.gene35126:CDS | 45.0% | |
| ACTGGTGGCTATGTGATCTA+TGG | + | chr4.4:19665659-19665678 | MS.gene35126:CDS | 45.0% | |
| AGAAGGGTCCGAGGATAAAT+GGG | + | chr4.4:19664914-19664933 | MS.gene35126:CDS | 45.0% | |
| AGAGATAGGTAATCCTGCAG+AGG | + | chr4.4:19664887-19664906 | MS.gene35126:CDS | 45.0% | |
| AGGAACAGTGGCATATGTCA+GGG | + | chr4.4:19664786-19664805 | MS.gene35126:CDS | 45.0% | |
| AGTCTCCCATTTCAAACTGG+TGG | + | chr4.4:19665644-19665663 | MS.gene35126:CDS | 45.0% | |
| ATCCTGCAGAGGTTTCAGAA+GGG | + | chr4.4:19664898-19664917 | MS.gene35126:CDS | 45.0% | |
| ATCTTGCAACACCCCAATGA+TGG | - | chr4.4:19664689-19664708 | None:intergenic | 45.0% | |
| ATCTTGCAGCACAAACCACA+AGG | + | chr4.4:19665589-19665608 | MS.gene35126:CDS | 45.0% | |
| CATCAGCATTCAGGTGGAAT+TGG | + | chr4.4:19665689-19665708 | MS.gene35126:CDS | 45.0% | |
| CCAAGAACACACTGGAGTAA+TGG | + | chr4.4:19666214-19666233 | MS.gene35126:CDS | 45.0% | |
| CCATTACTCCAGTGTGTTCT+TGG | - | chr4.4:19666217-19666236 | None:intergenic | 45.0% | |
| GGAATTGGATCCACCCTATA+TGG | + | chr4.4:19665704-19665723 | MS.gene35126:CDS | 45.0% | |
| GGCACACACACAAGAAATGA+TGG | + | chr4.4:19664726-19664745 | MS.gene35126:CDS | 45.0% | |
| GGCCAGATTATAAAGGAGGT+TGG | + | chr4.4:19665048-19665067 | MS.gene35126:CDS | 45.0% | |
| GGGTATCATAATGAGCGACA+TGG | + | chr4.4:19665534-19665553 | MS.gene35126:intron | 45.0% | |
| GGTTCCGTCACGATAATTGA+TGG | + | chr4.4:19666155-19666174 | MS.gene35126:CDS | 45.0% | |
| GTTCATGCCATTGATACACG+TGG | + | chr4.4:19664945-19664964 | MS.gene35126:CDS | 45.0% | |
| ! | ACACAGTGCAAGTTGAAGGA+AGG | + | chr4.4:19665089-19665108 | MS.gene35126:CDS | 45.0% |
| ! | CCGAAATTTGAGTTAGGACC+TGG | + | chr4.4:19664540-19664559 | MS.gene35126:CDS | 45.0% |
| ! | GTTGCTGTTCTGCAACCAAT+AGG | - | chr4.4:19666250-19666269 | None:intergenic | 45.0% |
| ! | TCAATTATCGTGACGGAACC+TGG | - | chr4.4:19666155-19666174 | None:intergenic | 45.0% |
| ! | TGTTGCTGTTCCTCGTGTTT+CGG | - | chr4.4:19664844-19664863 | None:intergenic | 45.0% |
| !! | CAGAACTTGGAAGCATCCTT+TGG | - | chr4.4:19664752-19664771 | None:intergenic | 45.0% |
| !! | GCTGAAGTAGTTGATGATGC+TGG | + | chr4.4:19664633-19664652 | MS.gene35126:CDS | 45.0% |
| ACGCAATCAGCACAGACTGT+TGG | - | chr4.4:19665420-19665439 | None:intergenic | 50.0% | |
| CAGAAGGGTCCGAGGATAAA+TGG | + | chr4.4:19664913-19664932 | MS.gene35126:CDS | 50.0% | |
| GAGGAACAGTGGCATATGTC+AGG | + | chr4.4:19664785-19664804 | MS.gene35126:CDS | 50.0% | |
| GTGGCGTGGAGGATAAGTTA+GGG | + | chr4.4:19664964-19664983 | MS.gene35126:CDS | 50.0% | |
| GTTGCACATCAGCATTCAGG+TGG | + | chr4.4:19665683-19665702 | MS.gene35126:CDS | 50.0% | |
| TGGATCCACCCTATATGGAC+AGG | + | chr4.4:19665709-19665728 | MS.gene35126:CDS | 50.0% | |
| TGTAGAGTCTCTCGACTGCT+AGG | + | chr4.4:19665443-19665462 | MS.gene35126:intron | 50.0% | |
| ! | ATCGTGACGGAACCTGGTTT+AGG | - | chr4.4:19666149-19666168 | None:intergenic | 50.0% |
| ! | GGTGTTGCACATCAGCATTC+AGG | + | chr4.4:19665680-19665699 | MS.gene35126:CDS | 50.0% |
| AGAGGTTTCAGAAGGGTCCG+AGG | + | chr4.4:19664905-19664924 | MS.gene35126:CDS | 55.0% | |
| CACAGCCATTTCGCTCCTTG+TGG | - | chr4.4:19665607-19665626 | None:intergenic | 55.0% | |
| CATTGATACACGTGGCGTGG+AGG | + | chr4.4:19664953-19664972 | MS.gene35126:CDS | 55.0% | |
| CGTGGCGTGGAGGATAAGTT+AGG | + | chr4.4:19664963-19664982 | MS.gene35126:CDS | 55.0% | |
| CTCCACGCCACGTGTATCAA+TGG | - | chr4.4:19664955-19664974 | None:intergenic | 55.0% | |
| TGCCATTGATACACGTGGCG+TGG | + | chr4.4:19664950-19664969 | MS.gene35126:CDS | 55.0% | |
| ! | GGCATTGGATCCGAAACACG+AGG | + | chr4.4:19664831-19664850 | MS.gene35126:CDS | 55.0% |
| !! | GACCCTTCTGAAACCTCTGC+AGG | - | chr4.4:19664903-19664922 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19664420 | 19666343 | 19664420 | ID=MS.gene35126 |
| chr4.4 | mRNA | 19664420 | 19666343 | 19664420 | ID=MS.gene35126.t1;Parent=MS.gene35126 |
| chr4.4 | exon | 19664420 | 19665271 | 19664420 | ID=MS.gene35126.t1.exon1;Parent=MS.gene35126.t1 |
| chr4.4 | CDS | 19664420 | 19665271 | 19664420 | ID=cds.MS.gene35126.t1;Parent=MS.gene35126.t1 |
| chr4.4 | exon | 19665572 | 19665730 | 19665572 | ID=MS.gene35126.t1.exon2;Parent=MS.gene35126.t1 |
| chr4.4 | CDS | 19665572 | 19665730 | 19665572 | ID=cds.MS.gene35126.t1;Parent=MS.gene35126.t1 |
| chr4.4 | exon | 19666050 | 19666343 | 19666050 | ID=MS.gene35126.t1.exon3;Parent=MS.gene35126.t1 |
| chr4.4 | CDS | 19666050 | 19666343 | 19666050 | ID=cds.MS.gene35126.t1;Parent=MS.gene35126.t1 |
| Gene Sequence |
| Protein sequence |
