Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35194.t1 | KEH31414.1 | 90.3 | 226 | 20 | 1 | 1 | 224 | 1 | 226 | 2.60E-110 | 408.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35194.t1 | O23006 | 49.1 | 220 | 111 | 1 | 7 | 225 | 1 | 220 | 1.6e-52 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35194.t1 | G8A1U1 | 90.3 | 226 | 20 | 1 | 1 | 224 | 1 | 226 | 1.9e-110 | 408.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058404 | MS.gene35194 | 0.817397 | 3.37E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35194.t1 | MTR_4g094730 | 90.265 | 226 | 20 | 1 | 1 | 224 | 1 | 226 | 1.82e-148 | 421 |
| MS.gene35194.t1 | MTR_4g094730 | 90.265 | 226 | 20 | 1 | 1 | 224 | 1 | 226 | 1.25e-147 | 421 |
| MS.gene35194.t1 | MTR_3g072410 | 29.358 | 218 | 139 | 7 | 38 | 243 | 29 | 243 | 3.63e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35194.t1 | AT2G17120 | 49.091 | 220 | 111 | 1 | 7 | 225 | 1 | 220 | 4.33e-65 | 209 |
| MS.gene35194.t1 | AT1G21880 | 28.745 | 247 | 158 | 8 | 10 | 243 | 8 | 249 | 4.47e-21 | 92.4 |
| MS.gene35194.t1 | AT1G21880 | 28.745 | 247 | 158 | 8 | 10 | 243 | 8 | 249 | 6.43e-20 | 90.1 |
| MS.gene35194.t1 | AT1G77630 | 29.864 | 221 | 144 | 6 | 6 | 223 | 6 | 218 | 2.99e-15 | 76.6 |
Find 78 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGATGTTCCCCTTCC+AGG | 0.233486 | 4.4:-18861999 | MS.gene35194:intron |
| GAATCTATTGCTCAAGAATA+TGG | 0.284679 | 4.4:-18862089 | MS.gene35194:CDS |
| GGTTCCGGTGATTCAGATTC+AGG | 0.298259 | 4.4:-18860877 | MS.gene35194:CDS |
| TATGCACATATTGTTCCAAT+AGG | 0.319611 | 4.4:-18862122 | MS.gene35194:CDS |
| CTGGAATCTTATTCGCCGTT+TGG | 0.323481 | 4.4:+18862231 | None:intergenic |
| GAGGGTTAAGTTTGCGGGTT+TGG | 0.357501 | 4.4:-18862270 | MS.gene35194:CDS |
| AAACACTTGAAGTTTGCTTC+TGG | 0.364154 | 4.4:+18862634 | None:intergenic |
| TGTTCCGTTACTACATTTGC+AGG | 0.366257 | 4.4:+18862426 | None:intergenic |
| CAATCTTGTACTTGGGTACA+TGG | 0.382662 | 4.4:+18862321 | None:intergenic |
| CAGGGTTGCTATTTCCTTCA+AGG | 0.391811 | 4.4:+18862555 | None:intergenic |
| GATTCAATACTACTCCCTAT+TGG | 0.402734 | 4.4:+18862107 | None:intergenic |
| TAACTGCTGGTGCTACCATT+TGG | 0.408386 | 4.4:-18862196 | MS.gene35194:CDS |
| ATTAACTTTGTAACTGTTGT+TGG | 0.409815 | 4.4:+18862477 | None:intergenic |
| TTTGCCTTGTAGCTGTGATC+AGG | 0.415056 | 4.4:-18862168 | MS.gene35194:CDS |
| TGTTAGCTCCAAGGAGGTCT+AGG | 0.416629 | 4.4:+18862515 | None:intergenic |
| TTGGGCTCTAGCATGCTTCT+CGG | 0.418534 | 4.4:+18861605 | None:intergenic |
| ATAGCGAGGGTTAAGTTTGC+GGG | 0.428857 | 4.4:-18862275 | MS.gene35194:CDS |
| GCAGTTATATTATTAGCATC+TGG | 0.430813 | 4.4:+18862212 | None:intergenic |
| ACAGTGGCACCTAGTGGTTC+CGG | 0.432003 | 4.4:-18860892 | MS.gene35194:intron |
| ATTGATTACAAATGAATGTA+TGG | 0.440774 | 4.4:-18861516 | MS.gene35194:CDS |
| CAAGGTTGTTGCGTTTGTGC+TGG | 0.440828 | 4.4:+18862573 | None:intergenic |
| ATGCACATATTGTTCCAATA+GGG | 0.447055 | 4.4:-18862121 | MS.gene35194:CDS |
| CACAAACGCAACAACCTTGA+AGG | 0.449829 | 4.4:-18862569 | MS.gene35194:CDS |
| ACCCGGTACAATCTTGTACT+TGG | 0.454063 | 4.4:+18862313 | None:intergenic |
| TGTTGTTGGTGTTGCTTGGA+AGG | 0.464563 | 4.4:+18862491 | None:intergenic |
| TGCAAATGTAGTAACGGAAC+AGG | 0.465594 | 4.4:-18862424 | MS.gene35194:intron |
| GGAACCTTGATGACTTGGTT+GGG | 0.472297 | 4.4:+18862454 | None:intergenic |
| TAACTGTTGTTGGTGTTGCT+TGG | 0.473100 | 4.4:+18862487 | None:intergenic |
| TTGCAGTAGTAGCAAGTGTT+GGG | 0.480370 | 4.4:-18862678 | MS.gene35194:CDS |
| TACAAGATTGTACCGGGTGA+TGG | 0.483742 | 4.4:-18862308 | MS.gene35194:CDS |
| GTTGCATTTGGCACAAGGAA+TGG | 0.486915 | 4.4:+18861269 | None:intergenic |
| TTACTACATTTGCAGGGGAA+TGG | 0.490191 | 4.4:+18862433 | None:intergenic |
| AAGGAAATAGCAACCCTGTT+CGG | 0.499124 | 4.4:-18862550 | MS.gene35194:CDS |
| GATTGTACCGGGTGATGGGC+TGG | 0.502517 | 4.4:-18862303 | MS.gene35194:CDS |
| GTGTAGAAATATGTTGCATT+TGG | 0.504690 | 4.4:+18861257 | None:intergenic |
| AATAGCGAGGGTTAAGTTTG+CGG | 0.512277 | 4.4:-18862276 | MS.gene35194:CDS |
| TGCGTTTGTGCTGGTGTAGT+CGG | 0.516449 | 4.4:+18862582 | None:intergenic |
| CCCGGTACAATCTTGTACTT+GGG | 0.517809 | 4.4:+18862314 | None:intergenic |
| TGCTCCTGAATCTGAATCAC+CGG | 0.520712 | 4.4:+18860873 | None:intergenic |
| GGAACAAGATGGTCACTGTA+TGG | 0.521397 | 4.4:-18862711 | MS.gene35194:CDS |
| ACAAGATTGTACCGGGTGAT+GGG | 0.522910 | 4.4:-18862307 | MS.gene35194:CDS |
| TGTAGCTGTGATCAGGCGGA+TGG | 0.526869 | 4.4:-18862161 | MS.gene35194:CDS |
| AAATGTAAATGCGACTCTAC+TGG | 0.530306 | 4.4:-18861218 | MS.gene35194:CDS |
| ATTCAGATTCAGGAGCATCT+AGG | 0.534605 | 4.4:-18860867 | MS.gene35194:CDS |
| CTTGTACTTGGGTACATGGT+TGG | 0.536258 | 4.4:+18862325 | None:intergenic |
| TTGTAAGAAATTACCTGGAA+GGG | 0.540901 | 4.4:+18861986 | None:intergenic |
| GATGCTAATAATATAACTGC+TGG | 0.541523 | 4.4:-18862209 | MS.gene35194:CDS |
| GTTGCAGTAGTAGCAAGTGT+TGG | 0.544877 | 4.4:-18862679 | MS.gene35194:CDS |
| AAACACTTCCTAGACCTCCT+TGG | 0.549330 | 4.4:-18862523 | MS.gene35194:CDS |
| TAATCCCAACCAAGTCATCA+AGG | 0.555223 | 4.4:-18862458 | MS.gene35194:CDS |
| GGAATGGAACCTTGATGACT+TGG | 0.557647 | 4.4:+18862449 | None:intergenic |
| AATATGTTGCATTTGGCACA+AGG | 0.563072 | 4.4:+18861264 | None:intergenic |
| TTGGAAGGTTGTTAGCTCCA+AGG | 0.565038 | 4.4:+18862506 | None:intergenic |
| TGTAAGAAATTACCTGGAAG+GGG | 0.571154 | 4.4:+18861987 | None:intergenic |
| ACAAGGCAAAGGAATCCAAA+TGG | 0.573212 | 4.4:+18862181 | None:intergenic |
| GTTGTAAGAAATTACCTGGA+AGG | 0.576069 | 4.4:+18861985 | None:intergenic |
| AACACCAAAACATGAGCGTA+GGG | 0.577240 | 4.4:-18862732 | None:intergenic |
| GAGTATCAAAAGTGATTCAT+CGG | 0.580179 | 4.4:-18861297 | MS.gene35194:CDS |
| ACCCAAGTACAAGATTGTAC+CGG | 0.581624 | 4.4:-18862315 | MS.gene35194:CDS |
| TCCGCCTGATCACAGCTACA+AGG | 0.581971 | 4.4:+18862164 | None:intergenic |
| GTTCCGTTACTACATTTGCA+GGG | 0.582825 | 4.4:+18862427 | None:intergenic |
| CCCAAGTACAAGATTGTACC+GGG | 0.582853 | 4.4:-18862314 | MS.gene35194:CDS |
| AACACTTGCTACTACTGCAA+CGG | 0.583006 | 4.4:+18862681 | None:intergenic |
| GAACACCAAAACATGAGCGT+AGG | 0.583823 | 4.4:-18862733 | None:intergenic |
| GTAGCTGTGATCAGGCGGAT+GGG | 0.585028 | 4.4:-18862160 | MS.gene35194:CDS |
| TGGAACCTTGATGACTTGGT+TGG | 0.596529 | 4.4:+18862453 | None:intergenic |
| TTCCCCTGCAAATGTAGTAA+CGG | 0.598287 | 4.4:-18862430 | MS.gene35194:CDS |
| GCCTTGTAGCTGTGATCAGG+CGG | 0.600681 | 4.4:-18862165 | MS.gene35194:CDS |
| GAAGTATCAACAGATCCAAA+CGG | 0.604999 | 4.4:-18862246 | MS.gene35194:CDS |
| TCTGAATCACCGGAACCACT+AGG | 0.612532 | 4.4:+18860883 | None:intergenic |
| TTCCGTTACTACATTTGCAG+GGG | 0.619937 | 4.4:+18862428 | None:intergenic |
| TGATCACAGCTACAAGGCAA+AGG | 0.620145 | 4.4:+18862170 | None:intergenic |
| ATTGCATCCAGCCCATCACC+CGG | 0.634313 | 4.4:+18862296 | None:intergenic |
| ATGGGCTGGATGCAATAGCG+AGG | 0.663816 | 4.4:-18862289 | MS.gene35194:CDS |
| TGGGCTGGATGCAATAGCGA+GGG | 0.677894 | 4.4:-18862288 | MS.gene35194:CDS |
| CATGAGCGTAGGGAACAAGA+TGG | 0.678380 | 4.4:-18862722 | MS.gene35194:CDS |
| GAAGGTTGTTAGCTCCAAGG+AGG | 0.706118 | 4.4:+18862509 | None:intergenic |
| GTCGGCTAAACTACGACACG+TGG | 0.738036 | 4.4:+18862600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTTACAAATTATCTATT+TGG | - | chr4.4:18862603-18862622 | MS.gene35194:CDS | 15.0% |
| !! | AAAGAAAAAGAAATTGTTTC+TGG | - | chr4.4:18861997-18862016 | MS.gene35194:intron | 20.0% |
| !! | ATTGATTACAAATGAATGTA+TGG | - | chr4.4:18862062-18862081 | MS.gene35194:CDS | 20.0% |
| !! | CTAATTGAACTAAAAACATA+GGG | + | chr4.4:18862208-18862227 | None:intergenic | 20.0% |
| !! | GTATTACATTCTTTCAATTA+CGG | - | chr4.4:18861769-18861788 | MS.gene35194:intron | 20.0% |
| !! | TAGCTATATTTATTTACCTT+AGG | + | chr4.4:18862105-18862124 | None:intergenic | 20.0% |
| !! | TCTAATTGAACTAAAAACAT+AGG | + | chr4.4:18862209-18862228 | None:intergenic | 20.0% |
| !!! | AACAATTTCTTTTTCTTTGT+TGG | + | chr4.4:18861995-18862014 | None:intergenic | 20.0% |
| !!! | ACAATTTCTTTTTCTTTGTT+GGG | + | chr4.4:18861994-18862013 | None:intergenic | 20.0% |
| !!! | ATCTAAAACCGATAAATAAT+TGG | - | chr4.4:18862415-18862434 | MS.gene35194:intron | 20.0% |
| ! | AAAACCGATAAATAATTGGT+CGG | - | chr4.4:18862419-18862438 | MS.gene35194:intron | 25.0% |
| ! | AAGATAACTAAAAGTCTGTT+TGG | + | chr4.4:18861916-18861935 | None:intergenic | 25.0% |
| ! | ATTAACTTTGTAACTGTTGT+TGG | + | chr4.4:18861104-18861123 | None:intergenic | 25.0% |
| ! | TAACTAACAAACTAACTAAC+CGG | + | chr4.4:18862586-18862605 | None:intergenic | 25.0% |
| ! | TTGATTGAATTTATAGTGCT+TGG | - | chr4.4:18861730-18861749 | MS.gene35194:intron | 25.0% |
| ! | TTTAAACTACCATGTACAAT+AGG | + | chr4.4:18861620-18861639 | None:intergenic | 25.0% |
| !!! | AACAGACTTTTAGTTATCTT+AGG | - | chr4.4:18861916-18861935 | MS.gene35194:intron | 25.0% |
| !!! | TCTGATTTGTTTTTAAACAG+TGG | - | chr4.4:18862670-18862689 | MS.gene35194:CDS | 25.0% |
| !!! | TTTGATTTGTGTGATGATAT+TGG | - | chr4.4:18862245-18862264 | MS.gene35194:CDS | 25.0% |
| AGCTGTTAGTTGGTTATATT+AGG | - | chr4.4:18861653-18861672 | MS.gene35194:intron | 30.0% | |
| ATGCACATATTGTTCCAATA+GGG | - | chr4.4:18861457-18861476 | MS.gene35194:intron | 30.0% | |
| CAAACCGACCAATTATTTAT+CGG | + | chr4.4:18862426-18862445 | None:intergenic | 30.0% | |
| GAATCTATTGCTCAAGAATA+TGG | - | chr4.4:18861489-18861508 | MS.gene35194:intron | 30.0% | |
| GAGTATCAAAAGTGATTCAT+CGG | - | chr4.4:18862281-18862300 | MS.gene35194:CDS | 30.0% | |
| GATGCTAATAATATAACTGC+TGG | - | chr4.4:18861369-18861388 | MS.gene35194:intron | 30.0% | |
| GCAGTTATATTATTAGCATC+TGG | + | chr4.4:18861369-18861388 | None:intergenic | 30.0% | |
| GTGTAGAAATATGTTGCATT+TGG | + | chr4.4:18862324-18862343 | None:intergenic | 30.0% | |
| TATGCACATATTGTTCCAAT+AGG | - | chr4.4:18861456-18861475 | MS.gene35194:intron | 30.0% | |
| TCTTTCAATTACGGTAACAT+GGG | - | chr4.4:18861778-18861797 | MS.gene35194:intron | 30.0% | |
| TTCTTTCAATTACGGTAACA+TGG | - | chr4.4:18861777-18861796 | MS.gene35194:intron | 30.0% | |
| TTGAATTTATAGTGCTTGGT+AGG | - | chr4.4:18861734-18861753 | MS.gene35194:intron | 30.0% | |
| TTGTAAGAAATTACCTGGAA+GGG | + | chr4.4:18861595-18861614 | None:intergenic | 30.0% | |
| !! | GTTATATTAGGCTTTGTTTG+TGG | - | chr4.4:18861665-18861684 | MS.gene35194:intron | 30.0% |
| !! | TGTATGGTCATTTTATACAG+TGG | - | chr4.4:18862078-18862097 | MS.gene35194:CDS | 30.0% |
| AAATGTAAATGCGACTCTAC+TGG | - | chr4.4:18862360-18862379 | MS.gene35194:intron | 35.0% | |
| AATATGTTGCATTTGGCACA+AGG | + | chr4.4:18862317-18862336 | None:intergenic | 35.0% | |
| AGGAGTTGTAAGAAATTACC+TGG | + | chr4.4:18861600-18861619 | None:intergenic | 35.0% | |
| CAACAACAACTTACAATGTG+AGG | - | chr4.4:18862386-18862405 | MS.gene35194:intron | 35.0% | |
| CTTACAACTCCTATTGTACA+TGG | - | chr4.4:18861608-18861627 | MS.gene35194:CDS | 35.0% | |
| GATTCAATACTACTCCCTAT+TGG | + | chr4.4:18861474-18861493 | None:intergenic | 35.0% | |
| GTTGTAAGAAATTACCTGGA+AGG | + | chr4.4:18861596-18861615 | None:intergenic | 35.0% | |
| TGTAAGAAATTACCTGGAAG+GGG | + | chr4.4:18861594-18861613 | None:intergenic | 35.0% | |
| ! | AAACACTTGAAGTTTGCTTC+TGG | + | chr4.4:18860947-18860966 | None:intergenic | 35.0% |
| ! | AGTTGTGATTAGCTGTTAGT+TGG | - | chr4.4:18861643-18861662 | MS.gene35194:intron | 35.0% |
| ! | CATTTTATACAGTGGTCCTA+AGG | - | chr4.4:18862086-18862105 | MS.gene35194:CDS | 35.0% |
| ! | GAAGTATCAACAGATCCAAA+CGG | - | chr4.4:18861332-18861351 | MS.gene35194:intron | 35.0% |
| AAGGAAATAGCAACCCTGTT+CGG | - | chr4.4:18861028-18861047 | MS.gene35194:intron | 40.0% | |
| AATAGCGAGGGTTAAGTTTG+CGG | - | chr4.4:18861302-18861321 | MS.gene35194:CDS | 40.0% | |
| ACAAGGCAAAGGAATCCAAA+TGG | + | chr4.4:18861400-18861419 | None:intergenic | 40.0% | |
| ACCCAAGTACAAGATTGTAC+CGG | - | chr4.4:18861263-18861282 | MS.gene35194:CDS | 40.0% | |
| CAATCTTGTACTTGGGTACA+TGG | + | chr4.4:18861260-18861279 | None:intergenic | 40.0% | |
| CTTAGGATGATCTCTTTCAC+CGG | - | chr4.4:18861933-18861952 | MS.gene35194:intron | 40.0% | |
| GTTCCGTTACTACATTTGCA+GGG | + | chr4.4:18861154-18861173 | None:intergenic | 40.0% | |
| GTTGGATGTACCTGTTGAAA+CGG | + | chr4.4:18861238-18861257 | None:intergenic | 40.0% | |
| TAATCCCAACCAAGTCATCA+AGG | - | chr4.4:18861120-18861139 | MS.gene35194:intron | 40.0% | |
| TGTTCCGTTACTACATTTGC+AGG | + | chr4.4:18861155-18861174 | None:intergenic | 40.0% | |
| TTACTACATTTGCAGGGGAA+TGG | + | chr4.4:18861148-18861167 | None:intergenic | 40.0% | |
| TTCCCCTGCAAATGTAGTAA+CGG | - | chr4.4:18861148-18861167 | MS.gene35194:intron | 40.0% | |
| TTCCGTTACTACATTTGCAG+GGG | + | chr4.4:18861153-18861172 | None:intergenic | 40.0% | |
| TTGCAGTAGTAGCAAGTGTT+GGG | - | chr4.4:18860900-18860919 | MS.gene35194:intron | 40.0% | |
| ! | AACACTTGCTACTACTGCAA+CGG | + | chr4.4:18860900-18860919 | None:intergenic | 40.0% |
| ! | AGTGTTCTGAGTAGTAAGAG+TGG | + | chr4.4:18862559-18862578 | None:intergenic | 40.0% |
| ! | GACCAGCTTGAAGCTTTTTA+GGG | + | chr4.4:18861557-18861576 | None:intergenic | 40.0% |
| ! | TGACCAGCTTGAAGCTTTTT+AGG | + | chr4.4:18861558-18861577 | None:intergenic | 40.0% |
| ! | TGCAAATGTAGTAACGGAAC+AGG | - | chr4.4:18861154-18861173 | MS.gene35194:intron | 40.0% |
| ! | TTTTAAACAGTGGCACCTAG+TGG | - | chr4.4:18862680-18862699 | MS.gene35194:CDS | 40.0% |
| !! | ATTCAGATTCAGGAGCATCT+AGG | - | chr4.4:18862711-18862730 | MS.gene35194:CDS | 40.0% |
| !! | GAAGTGTTTTACACCGAACA+GGG | + | chr4.4:18861044-18861063 | None:intergenic | 40.0% |
| !! | TAACTGTTGTTGGTGTTGCT+TGG | + | chr4.4:18861094-18861113 | None:intergenic | 40.0% |
| AAACACTTCCTAGACCTCCT+TGG | - | chr4.4:18861055-18861074 | MS.gene35194:intron | 45.0% | |
| ACAAGATTGTACCGGGTGAT+GGG | - | chr4.4:18861271-18861290 | MS.gene35194:CDS | 45.0% | |
| ACCCGGTACAATCTTGTACT+TGG | + | chr4.4:18861268-18861287 | None:intergenic | 45.0% | |
| ACTACTCAGAACACTTGTGC+CGG | - | chr4.4:18862564-18862583 | MS.gene35194:CDS | 45.0% | |
| ATAGCGAGGGTTAAGTTTGC+GGG | - | chr4.4:18861303-18861322 | MS.gene35194:CDS | 45.0% | |
| CACAAACGCAACAACCTTGA+AGG | - | chr4.4:18861009-18861028 | MS.gene35194:intron | 45.0% | |
| CCCAAGTACAAGATTGTACC+GGG | - | chr4.4:18861264-18861283 | MS.gene35194:CDS | 45.0% | |
| CCCGGTACAATCTTGTACTT+GGG | + | chr4.4:18861267-18861286 | None:intergenic | 45.0% | |
| CGTACAGTTTGTGATTACGC+TGG | - | chr4.4:18862510-18862529 | MS.gene35194:CDS | 45.0% | |
| CTAACACTGACCGTTTCAAC+AGG | - | chr4.4:18861225-18861244 | MS.gene35194:CDS | 45.0% | |
| CTGGAATCTTATTCGCCGTT+TGG | + | chr4.4:18861350-18861369 | None:intergenic | 45.0% | |
| CTTGTACTTGGGTACATGGT+TGG | + | chr4.4:18861256-18861275 | None:intergenic | 45.0% | |
| GACCCTAAAAAGCTTCAAGC+TGG | - | chr4.4:18861552-18861571 | MS.gene35194:CDS | 45.0% | |
| GGAACAAGATGGTCACTGTA+TGG | - | chr4.4:18860867-18860886 | MS.gene35194:CDS | 45.0% | |
| GTTGCAGTAGTAGCAAGTGT+TGG | - | chr4.4:18860899-18860918 | MS.gene35194:intron | 45.0% | |
| GTTGCATTTGGCACAAGGAA+TGG | + | chr4.4:18862312-18862331 | None:intergenic | 45.0% | |
| TACAAGATTGTACCGGGTGA+TGG | - | chr4.4:18861270-18861289 | MS.gene35194:CDS | 45.0% | |
| TGATCACAGCTACAAGGCAA+AGG | + | chr4.4:18861411-18861430 | None:intergenic | 45.0% | |
| TGCTCCTGAATCTGAATCAC+CGG | + | chr4.4:18862708-18862727 | None:intergenic | 45.0% | |
| TTGGAAGGTTGTTAGCTCCA+AGG | + | chr4.4:18861075-18861094 | None:intergenic | 45.0% | |
| TTTGCCTTGTAGCTGTGATC+AGG | - | chr4.4:18861410-18861429 | MS.gene35194:intron | 45.0% | |
| ! | GGAATGGAACCTTGATGACT+TGG | + | chr4.4:18861132-18861151 | None:intergenic | 45.0% |
| !! | CAGGGTTGCTATTTCCTTCA+AGG | + | chr4.4:18861026-18861045 | None:intergenic | 45.0% |
| !! | GGAACCTTGATGACTTGGTT+GGG | + | chr4.4:18861127-18861146 | None:intergenic | 45.0% |
| !! | GGTTCTGAAGCTATCGTATC+CGG | + | chr4.4:18861955-18861974 | None:intergenic | 45.0% |
| !! | TAACTGCTGGTGCTACCATT+TGG | - | chr4.4:18861382-18861401 | MS.gene35194:intron | 45.0% |
| !! | TGGAACCTTGATGACTTGGT+TGG | + | chr4.4:18861128-18861147 | None:intergenic | 45.0% |
| !! | TGTTGTTGGTGTTGCTTGGA+AGG | + | chr4.4:18861090-18861109 | None:intergenic | 45.0% |
| !!! | GGAAGTGTTTTACACCGAAC+AGG | + | chr4.4:18861045-18861064 | None:intergenic | 45.0% |
| CAAGGTTGTTGCGTTTGTGC+TGG | + | chr4.4:18861008-18861027 | None:intergenic | 50.0% | |
| CTTCTTGATGTTCCCCTTCC+AGG | - | chr4.4:18861579-18861598 | MS.gene35194:CDS | 50.0% | |
| GAAGGTTGTTAGCTCCAAGG+AGG | + | chr4.4:18861072-18861091 | None:intergenic | 50.0% | |
| GAGGGTTAAGTTTGCGGGTT+TGG | - | chr4.4:18861308-18861327 | MS.gene35194:CDS | 50.0% | |
| GGTTCCGGTGATTCAGATTC+AGG | - | chr4.4:18862701-18862720 | MS.gene35194:CDS | 50.0% | |
| TCTGAATCACCGGAACCACT+AGG | + | chr4.4:18862698-18862717 | None:intergenic | 50.0% | |
| TGTACGACTACACGAAGCTG+TGG | + | chr4.4:18862496-18862515 | None:intergenic | 50.0% | |
| TGTCCGTCTATGGAATGCTC+CGG | - | chr4.4:18862444-18862463 | MS.gene35194:CDS | 50.0% | |
| TGTTAGCTCCAAGGAGGTCT+AGG | + | chr4.4:18861066-18861085 | None:intergenic | 50.0% | |
| ! | TGCGTTTGTGCTGGTGTAGT+CGG | + | chr4.4:18860999-18861018 | None:intergenic | 50.0% |
| ! | TTGGGCTCTAGCATGCTTCT+CGG | + | chr4.4:18861976-18861995 | None:intergenic | 50.0% |
| !! | TTGGTCGGTTTGTCCGTCTA+TGG | - | chr4.4:18862434-18862453 | MS.gene35194:CDS | 50.0% |
| ACAGTGGCACCTAGTGGTTC+CGG | - | chr4.4:18862686-18862705 | MS.gene35194:CDS | 55.0% | |
| ATTGCATCCAGCCCATCACC+CGG | + | chr4.4:18861285-18861304 | None:intergenic | 55.0% | |
| GCCTTGTAGCTGTGATCAGG+CGG | - | chr4.4:18861413-18861432 | MS.gene35194:intron | 55.0% | |
| GTAGCTGTGATCAGGCGGAT+GGG | - | chr4.4:18861418-18861437 | MS.gene35194:intron | 55.0% | |
| GTCCGTCTATGGAATGCTCC+GGG | - | chr4.4:18862445-18862464 | MS.gene35194:CDS | 55.0% | |
| GTCGGCTAAACTACGACACG+TGG | + | chr4.4:18860981-18861000 | None:intergenic | 55.0% | |
| GTTCCCAAGCATCACACTCC+CGG | + | chr4.4:18862466-18862485 | None:intergenic | 55.0% | |
| TCCGCCTGATCACAGCTACA+AGG | + | chr4.4:18861417-18861436 | None:intergenic | 55.0% | |
| TGTAGCTGTGATCAGGCGGA+TGG | - | chr4.4:18861417-18861436 | MS.gene35194:intron | 55.0% | |
| ! | CTCCCGGAGCATTCCATAGA+CGG | + | chr4.4:18862450-18862469 | None:intergenic | 55.0% |
| ! | TGGGCTGGATGCAATAGCGA+GGG | - | chr4.4:18861290-18861309 | MS.gene35194:CDS | 55.0% |
| !! | ATGGGCTGGATGCAATAGCG+AGG | - | chr4.4:18861289-18861308 | MS.gene35194:CDS | 55.0% |
| ! | GCTCCGGGAGTGTGATGCTT+GGG | - | chr4.4:18862460-18862479 | MS.gene35194:CDS | 60.0% |
| ! | TGCTCCGGGAGTGTGATGCT+TGG | - | chr4.4:18862459-18862478 | MS.gene35194:CDS | 60.0% |
| !! | GATTGTACCGGGTGATGGGC+TGG | - | chr4.4:18861275-18861294 | MS.gene35194:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18860857 | 18862743 | 18860857 | ID=MS.gene35194 |
| chr4.4 | mRNA | 18860857 | 18862743 | 18860857 | ID=MS.gene35194.t1;Parent=MS.gene35194 |
| chr4.4 | exon | 18862425 | 18862743 | 18862425 | ID=MS.gene35194.t1.exon1;Parent=MS.gene35194.t1 |
| chr4.4 | CDS | 18862425 | 18862743 | 18862425 | ID=cds.MS.gene35194.t1;Parent=MS.gene35194.t1 |
| chr4.4 | exon | 18862000 | 18862353 | 18862000 | ID=MS.gene35194.t1.exon2;Parent=MS.gene35194.t1 |
| chr4.4 | CDS | 18862000 | 18862353 | 18862000 | ID=cds.MS.gene35194.t1;Parent=MS.gene35194.t1 |
| chr4.4 | exon | 18861493 | 18861635 | 18861493 | ID=MS.gene35194.t1.exon3;Parent=MS.gene35194.t1 |
| chr4.4 | CDS | 18861493 | 18861635 | 18861493 | ID=cds.MS.gene35194.t1;Parent=MS.gene35194.t1 |
| chr4.4 | exon | 18861198 | 18861329 | 18861198 | ID=MS.gene35194.t1.exon4;Parent=MS.gene35194.t1 |
| chr4.4 | CDS | 18861198 | 18861329 | 18861198 | ID=cds.MS.gene35194.t1;Parent=MS.gene35194.t1 |
| chr4.4 | exon | 18860857 | 18860910 | 18860857 | ID=MS.gene35194.t1.exon5;Parent=MS.gene35194.t1 |
| chr4.4 | CDS | 18860857 | 18860910 | 18860857 | ID=cds.MS.gene35194.t1;Parent=MS.gene35194.t1 |
| Gene Sequence |
| Protein sequence |
