Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058404.t1 | XP_003598212.1 | 98.1 | 371 | 7 | 0 | 1 | 371 | 1 | 371 | 1.10E-192 | 682.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058404.t1 | Q9SUW0 | 67.4 | 331 | 107 | 1 | 41 | 371 | 27 | 356 | 6.4e-125 | 448.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058404.t1 | G7IYG6 | 98.1 | 371 | 7 | 0 | 1 | 371 | 1 | 371 | 7.8e-193 | 682.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058404 | MS.gene066204 | 0.805077 | 1.59E-49 | -1.69E-46 |
MS.gene058404 | MS.gene09078 | 0.809336 | 1.99E-50 | -1.69E-46 |
MS.gene058404 | MS.gene09818 | 0.813717 | 2.22E-51 | -1.69E-46 |
MS.gene058404 | MS.gene24332 | 0.80765 | 4.56E-50 | -1.69E-46 |
MS.gene058404 | MS.gene34720 | 0.829248 | 5.72E-55 | -1.69E-46 |
MS.gene058404 | MS.gene35194 | 0.817397 | 3.37E-52 | -1.69E-46 |
MS.gene058404 | MS.gene36330 | 0.821624 | 3.66E-53 | -1.69E-46 |
MS.gene058404 | MS.gene47799 | 0.833245 | 5.96E-56 | -1.69E-46 |
MS.gene058404 | MS.gene56231 | 0.883499 | 4.26E-71 | -1.69E-46 |
MS.gene058404 | MS.gene62896 | 0.810771 | 9.76E-51 | -1.69E-46 |
MS.gene058404 | MS.gene63043 | 0.847446 | 1.15E-59 | -1.69E-46 |
MS.gene058404 | MS.gene65682 | 0.82721 | 1.77E-54 | -1.69E-46 |
MS.gene058404 | MS.gene76513 | 0.82394 | 1.06E-53 | -1.69E-46 |
MS.gene058404 | MS.gene77179 | 0.808992 | 2.36E-50 | -1.69E-46 |
MS.gene058404 | MS.gene81115 | 0.821443 | 4.03E-53 | -1.69E-46 |
MS.gene058404 | MS.gene84358 | 0.90474 | 8.94E-80 | -1.69E-46 |
MS.gene058404 | MS.gene85128 | 0.822553 | 2.23E-53 | -1.69E-46 |
MS.gene058404 | MS.gene90181 | 0.821294 | 4.36E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058404.t1 | MTR_3g008500 | 98.113 | 371 | 7 | 0 | 1 | 371 | 1 | 371 | 0.0 | 753 |
MS.gene058404.t1 | MTR_4g036090 | 73.529 | 374 | 89 | 4 | 1 | 371 | 1 | 367 | 0.0 | 550 |
MS.gene058404.t1 | MTR_4g036090 | 72.063 | 383 | 97 | 4 | 1 | 380 | 1 | 376 | 0.0 | 548 |
MS.gene058404.t1 | MTR_4g101600 | 60.963 | 374 | 138 | 5 | 1 | 371 | 1 | 369 | 9.79e-157 | 446 |
MS.gene058404.t1 | MTR_8g090330 | 52.450 | 347 | 146 | 4 | 25 | 371 | 17 | 344 | 3.18e-123 | 360 |
MS.gene058404.t1 | MTR_3g074180 | 54.717 | 318 | 122 | 4 | 58 | 374 | 53 | 349 | 3.50e-120 | 353 |
MS.gene058404.t1 | MTR_5g063080 | 53.548 | 310 | 124 | 3 | 62 | 371 | 69 | 358 | 7.39e-113 | 334 |
MS.gene058404.t1 | MTR_3g091010 | 54.804 | 281 | 120 | 4 | 95 | 371 | 64 | 341 | 1.12e-106 | 318 |
MS.gene058404.t1 | MTR_8g027765 | 52.158 | 278 | 132 | 1 | 95 | 371 | 20 | 297 | 4.22e-102 | 305 |
MS.gene058404.t1 | MTR_8g090330 | 51.536 | 293 | 123 | 4 | 25 | 317 | 17 | 290 | 3.22e-97 | 292 |
MS.gene058404.t1 | MTR_4g036685 | 58.672 | 271 | 83 | 10 | 70 | 327 | 1 | 255 | 8.26e-90 | 271 |
MS.gene058404.t1 | MTR_4g128870 | 43.220 | 118 | 36 | 4 | 120 | 237 | 6 | 92 | 3.87e-20 | 84.7 |
MS.gene058404.t1 | MTR_4g080160 | 27.899 | 276 | 154 | 12 | 114 | 371 | 588 | 836 | 5.24e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058404.t1 | AT4G22590 | 62.534 | 371 | 124 | 2 | 1 | 371 | 1 | 356 | 8.51e-162 | 459 |
MS.gene058404.t1 | AT5G51460 | 59.524 | 378 | 136 | 6 | 1 | 371 | 1 | 368 | 1.40e-157 | 448 |
MS.gene058404.t1 | AT5G51460 | 59.524 | 378 | 136 | 6 | 1 | 371 | 1 | 368 | 1.40e-157 | 448 |
MS.gene058404.t1 | AT5G51460 | 59.367 | 379 | 136 | 7 | 1 | 371 | 1 | 369 | 8.25e-156 | 444 |
MS.gene058404.t1 | AT5G51460 | 59.367 | 379 | 136 | 7 | 1 | 371 | 1 | 369 | 8.25e-156 | 444 |
MS.gene058404.t1 | AT5G51460 | 59.367 | 379 | 136 | 7 | 1 | 371 | 1 | 369 | 8.25e-156 | 444 |
MS.gene058404.t1 | AT4G12430 | 62.534 | 371 | 115 | 4 | 1 | 371 | 1 | 347 | 8.65e-153 | 436 |
MS.gene058404.t1 | AT1G35910 | 55.723 | 332 | 129 | 4 | 45 | 371 | 32 | 350 | 4.60e-124 | 363 |
MS.gene058404.t1 | AT4G39770 | 57.143 | 308 | 111 | 2 | 64 | 371 | 45 | 331 | 1.40e-118 | 347 |
MS.gene058404.t1 | AT4G39770 | 57.143 | 308 | 111 | 2 | 64 | 371 | 45 | 331 | 2.34e-118 | 347 |
MS.gene058404.t1 | AT1G78090 | 50.284 | 352 | 145 | 7 | 31 | 371 | 23 | 355 | 1.86e-115 | 340 |
MS.gene058404.t1 | AT1G78090 | 50.284 | 352 | 145 | 7 | 31 | 371 | 23 | 355 | 3.52e-115 | 340 |
MS.gene058404.t1 | AT5G10100 | 53.376 | 311 | 127 | 3 | 62 | 371 | 58 | 351 | 4.59e-115 | 339 |
MS.gene058404.t1 | AT5G10100 | 53.376 | 311 | 127 | 3 | 62 | 371 | 58 | 351 | 5.55e-115 | 340 |
MS.gene058404.t1 | AT5G10100 | 53.376 | 311 | 127 | 3 | 62 | 371 | 69 | 362 | 6.91e-115 | 340 |
MS.gene058404.t1 | AT5G65140 | 48.753 | 361 | 157 | 4 | 22 | 371 | 11 | 354 | 1.67e-113 | 336 |
MS.gene058404.t1 | AT2G22190 | 54.575 | 306 | 115 | 2 | 66 | 371 | 55 | 336 | 5.58e-112 | 331 |
MS.gene058404.t1 | AT2G22190 | 54.575 | 306 | 115 | 2 | 66 | 371 | 55 | 336 | 7.74e-112 | 331 |
MS.gene058404.t1 | AT1G22210 | 54.426 | 305 | 123 | 2 | 67 | 371 | 14 | 302 | 1.15e-110 | 327 |
MS.gene058404.t1 | AT5G65140 | 48.338 | 331 | 143 | 4 | 22 | 341 | 11 | 324 | 1.98e-102 | 306 |
MS.gene058404.t1 | AT5G10100 | 49.839 | 311 | 118 | 4 | 62 | 371 | 69 | 342 | 1.51e-100 | 302 |
MS.gene058404.t1 | AT5G65140 | 52.344 | 256 | 105 | 2 | 62 | 317 | 62 | 300 | 2.73e-89 | 272 |
MS.gene058404.t1 | AT1G70290 | 28.014 | 282 | 154 | 14 | 119 | 381 | 545 | 796 | 3.58e-11 | 65.5 |
MS.gene058404.t1 | AT1G70290 | 28.014 | 282 | 154 | 14 | 119 | 381 | 583 | 834 | 4.24e-11 | 65.1 |
Find 82 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACCGATGAAGATGCATTTA+AGG | 0.231051 | 3.2:+2942074 | MS.gene058404:CDS |
CTCGATGATGTTCGTTCTAA+TGG | 0.251756 | 3.2:+2939899 | MS.gene058404:CDS |
AGTGAGGTTAATAAAGGTTT+TGG | 0.252937 | 3.2:+2942203 | MS.gene058404:CDS |
TCAGTAGACCTAATGCAATT+AGG | 0.262806 | 3.2:-2940824 | None:intergenic |
AGAAAAGTTGAAGTGTTTGT+AGG | 0.326919 | 3.2:-2939833 | None:intergenic |
TAATTTACAGAGTTGGGATT+TGG | 0.331008 | 3.2:+2941627 | MS.gene058404:intron |
AGTCATGGAATGGACATAAT+TGG | 0.337966 | 3.2:+2940770 | MS.gene058404:CDS |
GAGGAGCATGATTTGTCTTC+AGG | 0.346590 | 3.2:-2939733 | None:intergenic |
CAGTAGACCTAATGCAATTA+GGG | 0.349056 | 3.2:-2940823 | None:intergenic |
CTAGAGTTTCCATCAGCAAT+TGG | 0.374834 | 3.2:+2940130 | MS.gene058404:CDS |
CGCTCAGGATTGTCAACAAT+TGG | 0.385451 | 3.2:-2940229 | None:intergenic |
TAAACCGCGTTGCTTTCTTT+AGG | 0.393472 | 3.2:-2942245 | None:intergenic |
TAGAGTTTCCATCAGCAATT+GGG | 0.394464 | 3.2:+2940131 | MS.gene058404:CDS |
ATAATCACCCTAATTGCATT+AGG | 0.394713 | 3.2:+2940816 | MS.gene058404:CDS |
AAGAAAATATCGATGGATAT+TGG | 0.400122 | 3.2:+2939959 | MS.gene058404:CDS |
CCTTGATCTTGTCCTTGTTA+AGG | 0.404552 | 3.2:-2939774 | None:intergenic |
ACCAGTGATTGACTGGGATA+AGG | 0.413046 | 3.2:+2941871 | MS.gene058404:CDS |
TTCCATGACTACCAGCATAA+TGG | 0.413429 | 3.2:-2940757 | None:intergenic |
CCAGTGATTGACTGGGATAA+GGG | 0.414884 | 3.2:+2941872 | MS.gene058404:CDS |
CTTCAGGTACATGAATTTGT+TGG | 0.418768 | 3.2:+2940722 | MS.gene058404:intron |
AGGTTCGACCAGTGATTGAC+TGG | 0.424416 | 3.2:+2941864 | MS.gene058404:CDS |
ACGATTCCACGGAAGAAGAT+AGG | 0.432313 | 3.2:+2939872 | MS.gene058404:CDS |
TGATTTGTCTTCAGGTCCAT+TGG | 0.443083 | 3.2:-2939725 | None:intergenic |
CAGGATATTACATACATTGT+CGG | 0.457666 | 3.2:-2940263 | None:intergenic |
CCCTTATCCCAGTCAATCAC+TGG | 0.457934 | 3.2:-2941872 | None:intergenic |
ATGCATACCTCATCAATCAT+AGG | 0.460691 | 3.2:-2941015 | None:intergenic |
TGCTGCTTATTTAACCTGGC+TGG | 0.464042 | 3.2:+2940009 | MS.gene058404:CDS |
TACACTCAGTGAGCAACTTA+CGG | 0.466005 | 3.2:-2941252 | None:intergenic |
TTCCGCTAATTATTGCAGTC+GGG | 0.470603 | 3.2:-2940418 | None:intergenic |
CTCCATTATGCTGGTAGTCA+TGG | 0.474044 | 3.2:+2940755 | MS.gene058404:CDS |
CAAATTACTAACCTTGCAAA+AGG | 0.474768 | 3.2:+2940163 | MS.gene058404:CDS |
CTGATGCTGCTTATTTAACC+TGG | 0.480480 | 3.2:+2940005 | MS.gene058404:CDS |
TTTACAGAGTTGGGATTTGG+TGG | 0.481910 | 3.2:+2941630 | MS.gene058404:intron |
GGAGAGCATGACAGACTTGA+AGG | 0.486250 | 3.2:-2939812 | None:intergenic |
ATGATGTTCGTTCTAATGGT+TGG | 0.487662 | 3.2:+2939903 | MS.gene058404:CDS |
CATTGTTTCTTGATTACGAT+GGG | 0.487850 | 3.2:+2940197 | MS.gene058404:CDS |
CTTCCGCTAATTATTGCAGT+CGG | 0.489019 | 3.2:-2940419 | None:intergenic |
TCAGATACAGACTGTCTAAG+AGG | 0.504048 | 3.2:-2940794 | None:intergenic |
TTCCCGACTGCAATAATTAG+CGG | 0.504745 | 3.2:+2940416 | MS.gene058404:CDS |
ACAAGATCAAGGCTCGGTGC+AGG | 0.507337 | 3.2:+2939785 | MS.gene058404:CDS |
AAGGTTAGTAATTTGTTCAA+AGG | 0.511038 | 3.2:-2940155 | None:intergenic |
TTCCGTGGAATCGTTAGCGA+TGG | 0.515888 | 3.2:-2939863 | None:intergenic |
CATTAGGTCTACTGATAAGA+AGG | 0.516416 | 3.2:+2940832 | MS.gene058404:CDS |
CTCTCTTTCTGATCCTTCAG+AGG | 0.524465 | 3.2:+2942268 | MS.gene058404:CDS |
TAGCGGAAGAAGTCGTGAAA+AGG | 0.529643 | 3.2:+2940433 | MS.gene058404:CDS |
AACCTTAAATGCATCTTCAT+CGG | 0.535866 | 3.2:-2942076 | None:intergenic |
TCAAAGGCCCCAATTGCTGA+TGG | 0.536930 | 3.2:-2940139 | None:intergenic |
TACTCACAAGAAAATATCGA+TGG | 0.547593 | 3.2:+2939952 | MS.gene058404:CDS |
CCATGAGTTAATCGTAAATG+TGG | 0.548944 | 3.2:-2941685 | None:intergenic |
TCGGACATGAAAGCACGCTC+AGG | 0.550059 | 3.2:-2940244 | None:intergenic |
TTAACAGATCTCCATTATGC+TGG | 0.550969 | 3.2:+2940746 | MS.gene058404:CDS |
GATGTGCTAGCTATATATAT+TGG | 0.554483 | 3.2:+2942042 | MS.gene058404:CDS |
ACCATAAGAATTACCTCTGA+AGG | 0.557104 | 3.2:-2942281 | None:intergenic |
CCTTAACAAGGACAAGATCA+AGG | 0.569283 | 3.2:+2939774 | MS.gene058404:CDS |
TTATGCTGGTAGTCATGGAA+TGG | 0.572153 | 3.2:+2940760 | MS.gene058404:CDS |
CTGATACTGCAACCTTAACA+AGG | 0.577184 | 3.2:+2939762 | MS.gene058404:CDS |
GCAGGAATTCAGCAGCAGGT+TGG | 0.579369 | 3.2:-2940993 | None:intergenic |
ATACCTCATCAATCATAGGC+AGG | 0.580942 | 3.2:-2941011 | None:intergenic |
GTATGTGTTTCCTACCAGCC+AGG | 0.583641 | 3.2:-2940023 | None:intergenic |
ATAGGCAGGAATTCAGCAGC+AGG | 0.587802 | 3.2:-2940997 | None:intergenic |
CCACATTTACGATTAACTCA+TGG | 0.588038 | 3.2:+2941685 | MS.gene058404:CDS |
AAGATTATCAAAATCTACCA+AGG | 0.590336 | 3.2:+2942744 | MS.gene058404:CDS |
CTATATATATTGGTGACGAT+CGG | 0.591664 | 3.2:+2942052 | MS.gene058404:CDS |
CGCGTTGCTTTCTTTAGGAG+CGG | 0.596598 | 3.2:-2942240 | None:intergenic |
AGAATTCCTATCTTCTTCCG+TGG | 0.605970 | 3.2:-2939878 | None:intergenic |
ATATCGATGGATATTGGTCA+TGG | 0.606467 | 3.2:+2939965 | MS.gene058404:CDS |
GCATTGTTTCTTGATTACGA+TGG | 0.607237 | 3.2:+2940196 | MS.gene058404:CDS |
GTCCATCGCTAACGATTCCA+CGG | 0.607941 | 3.2:+2939861 | MS.gene058404:CDS |
ACGATTAACTCATGGTCGGA+AGG | 0.614382 | 3.2:+2941693 | MS.gene058404:CDS |
AGATTATCAAAATCTACCAA+GGG | 0.625044 | 3.2:+2942745 | MS.gene058404:CDS |
AGAGTTTCCATCAGCAATTG+GGG | 0.625927 | 3.2:+2940132 | MS.gene058404:CDS |
GAGTGTACAAAAGACATCAA+AGG | 0.636577 | 3.2:+2941268 | MS.gene058404:CDS |
ATTTACGATTAACTCATGGT+CGG | 0.654472 | 3.2:+2941689 | MS.gene058404:CDS |
ATTCCTGCCTATGATTGATG+AGG | 0.658507 | 3.2:+2941008 | MS.gene058404:CDS |
ACAAGGACAAGATCAAGGCT+CGG | 0.658800 | 3.2:+2939779 | MS.gene058404:CDS |
GATTATCAAAATCTACCAAG+GGG | 0.673290 | 3.2:+2942746 | MS.gene058404:CDS |
GGTTCGACCAGTGATTGACT+GGG | 0.682318 | 3.2:+2941865 | MS.gene058404:CDS |
ACATTATCGCAATGTAGACG+AGG | 0.713352 | 3.2:+2941327 | MS.gene058404:CDS |
TTATCGCAATGTAGACGAGG+AGG | 0.714342 | 3.2:+2941330 | MS.gene058404:CDS |
CGCTCCTAAAGAAAGCAACG+CGG | 0.719562 | 3.2:+2942241 | MS.gene058404:CDS |
GTTGCAGTATCAGCAATGCG+AGG | 0.729280 | 3.2:-2939752 | None:intergenic |
ATTATCAAAATCTACCAAGG+GGG | 0.730497 | 3.2:+2942747 | MS.gene058404:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATATAACTGATATAAAA+TGG | + | chr3.2:2942164-2942183 | MS.gene058404:intron | 10.0% |
!!! | TTAATTTGTTGATTATATAA+TGG | + | chr3.2:2941932-2941951 | MS.gene058404:intron | 10.0% |
!! | AGAAGATTATAAATCAATAT+AGG | - | chr3.2:2940943-2940962 | None:intergenic | 15.0% |
!! | GAAGATTATAAATCAATATA+GGG | - | chr3.2:2940942-2940961 | None:intergenic | 15.0% |
!! | TATATCAGTTATATAAAGTA+AGG | - | chr3.2:2942161-2942180 | None:intergenic | 15.0% |
!!! | AATCTAGAATAAAAATTGAT+AGG | - | chr3.2:2941074-2941093 | None:intergenic | 15.0% |
!!! | TATAATCTTCTAAAATTACA+GGG | + | chr3.2:2940952-2940971 | MS.gene058404:intron | 15.0% |
!!! | TTATAATCTTCTAAAATTAC+AGG | + | chr3.2:2940951-2940970 | MS.gene058404:intron | 15.0% |
!! | GAAAACAACAACAAAAAAAT+AGG | - | chr3.2:2941416-2941435 | None:intergenic | 20.0% |
!! | GAATAATGTTTGTATCATTA+GGG | + | chr3.2:2942394-2942413 | MS.gene058404:intron | 20.0% |
!! | TGAAAATGAAACTAAATAAG+AGG | - | chr3.2:2941605-2941624 | None:intergenic | 20.0% |
!! | TGTAAAAAAATGTTGATGTT+AGG | + | chr3.2:2940668-2940687 | MS.gene058404:intron | 20.0% |
!! | TTCATATAATTTACAGAGTT+GGG | + | chr3.2:2941621-2941640 | MS.gene058404:intron | 20.0% |
!! | TTTCATATAATTTACAGAGT+TGG | + | chr3.2:2941620-2941639 | MS.gene058404:intron | 20.0% |
!!! | GAGAAAATTTCAATTTTCAA+GGG | + | chr3.2:2942587-2942606 | MS.gene058404:intron | 20.0% |
!!! | GTTAAAAATGGAATCATTTT+AGG | - | chr3.2:2941543-2941562 | None:intergenic | 20.0% |
!!! | TAAAGATAGATTCTGATTTT+GGG | + | chr3.2:2942557-2942576 | MS.gene058404:intron | 20.0% |
!!! | TCATTTTCTCAAATTCTTAT+TGG | + | chr3.2:2941142-2941161 | MS.gene058404:intron | 20.0% |
!!! | TGAGAAAATTTCAATTTTCA+AGG | + | chr3.2:2942586-2942605 | MS.gene058404:intron | 20.0% |
!!! | TGGTTGTAATTTAGTTTATA+TGG | + | chr3.2:2942300-2942319 | MS.gene058404:intron | 20.0% |
!!! | TTAAAGATAGATTCTGATTT+TGG | + | chr3.2:2942556-2942575 | MS.gene058404:intron | 20.0% |
! | AAAAGAGAAAAATGAAGTAC+AGG | - | chr3.2:2940495-2940514 | None:intergenic | 25.0% |
! | AAAATGTTATTCCTATCTTG+AGG | - | chr3.2:2942645-2942664 | None:intergenic | 25.0% |
! | AAGAAAATATCGATGGATAT+TGG | + | chr3.2:2939959-2939978 | MS.gene058404:CDS | 25.0% |
! | AAGATTATCAAAATCTACCA+AGG | + | chr3.2:2942744-2942763 | MS.gene058404:CDS | 25.0% |
! | ACAAGAGAAGAAAAATAATC+AGG | - | chr3.2:2940326-2940345 | None:intergenic | 25.0% |
! | AGATTATCAAAATCTACCAA+GGG | + | chr3.2:2942745-2942764 | MS.gene058404:CDS | 25.0% |
! | ATAACAGATGTCTCTTAAAA+AGG | - | chr3.2:2941801-2941820 | None:intergenic | 25.0% |
! | ATAAGTTGTTTATCCAAACA+AGG | - | chr3.2:2942420-2942439 | None:intergenic | 25.0% |
! | ATTTACATTTCTCTATATGC+AGG | - | chr3.2:2940531-2940550 | None:intergenic | 25.0% |
! | CTCTATAGTATAATGTATAG+AGG | + | chr3.2:2942508-2942527 | MS.gene058404:intron | 25.0% |
! | GCTGCAAAAATTGTAAAAAA+AGG | - | chr3.2:2940111-2940130 | None:intergenic | 25.0% |
! | GGAATAATGTTTGTATCATT+AGG | + | chr3.2:2942393-2942412 | MS.gene058404:intron | 25.0% |
! | GTAAAAAAAGGAAACGAATA+AGG | - | chr3.2:2940099-2940118 | None:intergenic | 25.0% |
!! | ATTTAAGGTTAATATGTTGC+TGG | + | chr3.2:2942089-2942108 | MS.gene058404:intron | 25.0% |
!! | CTTATTTAAAGTCAAACTTG+TGG | + | chr3.2:2942435-2942454 | MS.gene058404:intron | 25.0% |
!! | TATGTTTACTGATAATGTTC+AGG | + | chr3.2:2941835-2941854 | MS.gene058404:intron | 25.0% |
!!! | AAGGTTAGTAATTTGTTCAA+AGG | - | chr3.2:2940158-2940177 | None:intergenic | 25.0% |
!!! | TCTAGAAGTATCTTTCTAAA+GGG | + | chr3.2:2940915-2940934 | MS.gene058404:intron | 25.0% |
!!! | TTCTAGAAGTATCTTTCTAA+AGG | + | chr3.2:2940914-2940933 | MS.gene058404:intron | 25.0% |
AACCTTAAATGCATCTTCAT+CGG | - | chr3.2:2942079-2942098 | None:intergenic | 30.0% | |
AGAAATCATGAACTGAAAAG+TGG | - | chr3.2:2940860-2940879 | None:intergenic | 30.0% | |
ATAATCACCCTAATTGCATT+AGG | + | chr3.2:2940816-2940835 | MS.gene058404:CDS | 30.0% | |
ATGTATGTAATATCCTGCAA+AGG | + | chr3.2:2940269-2940288 | MS.gene058404:intron | 30.0% | |
ATTATCAAAATCTACCAAGG+GGG | + | chr3.2:2942747-2942766 | MS.gene058404:CDS | 30.0% | |
ATTTACGATTAACTCATGGT+CGG | + | chr3.2:2941689-2941708 | MS.gene058404:CDS | 30.0% | |
CAAATTACTAACCTTGCAAA+AGG | + | chr3.2:2940163-2940182 | MS.gene058404:CDS | 30.0% | |
CAGGATATTACATACATTGT+CGG | - | chr3.2:2940266-2940285 | None:intergenic | 30.0% | |
GAGAATCAAAAAGGAAAGAA+GGG | - | chr3.2:2941370-2941389 | None:intergenic | 30.0% | |
GATGTGCTAGCTATATATAT+TGG | + | chr3.2:2942042-2942061 | MS.gene058404:CDS | 30.0% | |
GATTATCAAAATCTACCAAG+GGG | + | chr3.2:2942746-2942765 | MS.gene058404:CDS | 30.0% | |
TAATTTACAGAGTTGGGATT+TGG | + | chr3.2:2941627-2941646 | MS.gene058404:intron | 30.0% | |
TACTCACAAGAAAATATCGA+TGG | + | chr3.2:2939952-2939971 | MS.gene058404:CDS | 30.0% | |
TCGACAACAAATTACATAGA+GGG | - | chr3.2:2940057-2940076 | None:intergenic | 30.0% | |
TGTAATACATATGTCAGTGT+TGG | - | chr3.2:2941112-2941131 | None:intergenic | 30.0% | |
TTCATGTACCTGAAGAAATA+AGG | - | chr3.2:2940717-2940736 | None:intergenic | 30.0% | |
TTCGACAACAAATTACATAG+AGG | - | chr3.2:2940058-2940077 | None:intergenic | 30.0% | |
TTGTGGAAGCTGTAAATTAA+TGG | + | chr3.2:2942695-2942714 | MS.gene058404:intron | 30.0% | |
! | ACATTTTTGCTTGAATCACT+TGG | + | chr3.2:2941905-2941924 | MS.gene058404:CDS | 30.0% |
! | ACGCGTTTTTGATATTATGA+AGG | + | chr3.2:2941657-2941676 | MS.gene058404:CDS | 30.0% |
! | AGAAAAGTTGAAGTGTTTGT+AGG | - | chr3.2:2939836-2939855 | None:intergenic | 30.0% |
! | AGTGAGGTTAATAAAGGTTT+TGG | + | chr3.2:2942203-2942222 | MS.gene058404:CDS | 30.0% |
! | ATCGATATTTTCTTGTGAGT+AGG | - | chr3.2:2939953-2939972 | None:intergenic | 30.0% |
! | CATTGTTTCTTGATTACGAT+GGG | + | chr3.2:2940197-2940216 | MS.gene058404:CDS | 30.0% |
! | GAAAAGTTTAGATCTAGAAC+TGG | - | chr3.2:2941726-2941745 | None:intergenic | 30.0% |
! | GCAATTTTGTACATTTGCTT+TGG | + | chr3.2:2942342-2942361 | MS.gene058404:intron | 30.0% |
!! | CTATATATATTGGTGACGAT+CGG | + | chr3.2:2942052-2942071 | MS.gene058404:CDS | 30.0% |
!! | GACTTGTTACAAAACTTTAG+TGG | + | chr3.2:2941767-2941786 | MS.gene058404:intron | 30.0% |
!! | GTTTTGAGTGAGGTTAATAA+AGG | + | chr3.2:2942197-2942216 | MS.gene058404:CDS | 30.0% |
!! | TCTTCTAAAATTACAGGGTA+AGG | + | chr3.2:2940957-2940976 | MS.gene058404:intron | 30.0% |
!! | TGATAATGTTCAGGTTTTAG+AGG | + | chr3.2:2941844-2941863 | MS.gene058404:intron | 30.0% |
!! | TTCAATTTTCAAGGGTTTCT+TGG | + | chr3.2:2942595-2942614 | MS.gene058404:intron | 30.0% |
!!! | ATAGATTCTGATTTTGGGTT+TGG | + | chr3.2:2942562-2942581 | MS.gene058404:intron | 30.0% |
AAATAAGGTGCAACAATGGT+TGG | - | chr3.2:2940702-2940721 | None:intergenic | 35.0% | |
ACCATAAGAATTACCTCTGA+AGG | - | chr3.2:2942284-2942303 | None:intergenic | 35.0% | |
ACTTATCGCGTATTTCATCA+TGG | + | chr3.2:2941565-2941584 | MS.gene058404:intron | 35.0% | |
AGTCATGGAATGGACATAAT+TGG | + | chr3.2:2940770-2940789 | MS.gene058404:CDS | 35.0% | |
ATATCGATGGATATTGGTCA+TGG | + | chr3.2:2939965-2939984 | MS.gene058404:CDS | 35.0% | |
ATGATGTTCGTTCTAATGGT+TGG | + | chr3.2:2939903-2939922 | MS.gene058404:CDS | 35.0% | |
ATGCATACCTCATCAATCAT+AGG | - | chr3.2:2941018-2941037 | None:intergenic | 35.0% | |
CAGTAGACCTAATGCAATTA+GGG | - | chr3.2:2940826-2940845 | None:intergenic | 35.0% | |
CATTAGGTCTACTGATAAGA+AGG | + | chr3.2:2940832-2940851 | MS.gene058404:CDS | 35.0% | |
CCACATTTACGATTAACTCA+TGG | + | chr3.2:2941685-2941704 | MS.gene058404:CDS | 35.0% | |
CCATGAGTTAATCGTAAATG+TGG | - | chr3.2:2941688-2941707 | None:intergenic | 35.0% | |
CGAGAATCAAAAAGGAAAGA+AGG | - | chr3.2:2941371-2941390 | None:intergenic | 35.0% | |
CTTCAGGTACATGAATTTGT+TGG | + | chr3.2:2940722-2940741 | MS.gene058404:intron | 35.0% | |
GAAGAAATAAGGTGCAACAA+TGG | - | chr3.2:2940706-2940725 | None:intergenic | 35.0% | |
GAGTGTACAAAAGACATCAA+AGG | + | chr3.2:2941268-2941287 | MS.gene058404:CDS | 35.0% | |
GATATAAAATGGACCGTAAC+AGG | + | chr3.2:2942175-2942194 | MS.gene058404:intron | 35.0% | |
TACAAGAGCGAGAATCAAAA+AGG | - | chr3.2:2941379-2941398 | None:intergenic | 35.0% | |
TACAAGTAAAGTGACACTGA+TGG | - | chr3.2:2940652-2940671 | None:intergenic | 35.0% | |
TAGAGTTTCCATCAGCAATT+GGG | + | chr3.2:2940131-2940150 | MS.gene058404:CDS | 35.0% | |
TCAGTAGACCTAATGCAATT+AGG | - | chr3.2:2940827-2940846 | None:intergenic | 35.0% | |
TCCTTCAGAGGTAATTCTTA+TGG | + | chr3.2:2942280-2942299 | MS.gene058404:intron | 35.0% | |
TGATGAAATACGCGATAAGT+TGG | - | chr3.2:2941565-2941584 | None:intergenic | 35.0% | |
TTAACAGATCTCCATTATGC+TGG | + | chr3.2:2940746-2940765 | MS.gene058404:CDS | 35.0% | |
! | AACACTTCAACTTTTCTGCA+TGG | + | chr3.2:2939839-2939858 | MS.gene058404:CDS | 35.0% |
! | CACGTGACATGTTTTCATTT+AGG | + | chr3.2:2942003-2942022 | MS.gene058404:intron | 35.0% |
! | CTATTTTCTTGCCTTTTGCA+AGG | - | chr3.2:2940177-2940196 | None:intergenic | 35.0% |
! | GCATTGTTTCTTGATTACGA+TGG | + | chr3.2:2940196-2940215 | MS.gene058404:CDS | 35.0% |
! | TTGTTGCACCTTATTTCTTC+AGG | + | chr3.2:2940706-2940725 | MS.gene058404:intron | 35.0% |
!! | CGCGATAAGTTGGTTAAAAA+TGG | - | chr3.2:2941555-2941574 | None:intergenic | 35.0% |
!!! | CTTTTTTCAACTGTACCAGA+GGG | - | chr3.2:2940628-2940647 | None:intergenic | 35.0% |
!!! | TCTTTTTTCAACTGTACCAG+AGG | - | chr3.2:2940629-2940648 | None:intergenic | 35.0% |
!!! | TTTTTTCAACTGTACCAGAG+GGG | - | chr3.2:2940627-2940646 | None:intergenic | 35.0% |
!!! | TTTTTTGCTCAAAGCTCTTG+TGG | + | chr3.2:2942678-2942697 | MS.gene058404:intron | 35.0% |
ACATTATCGCAATGTAGACG+AGG | + | chr3.2:2941327-2941346 | MS.gene058404:CDS | 40.0% | |
ACCTCACTCAAAACCTGTTA+CGG | - | chr3.2:2942191-2942210 | None:intergenic | 40.0% | |
AGAATTCCTATCTTCTTCCG+TGG | - | chr3.2:2939881-2939900 | None:intergenic | 40.0% | |
AGAGTTTCCATCAGCAATTG+GGG | + | chr3.2:2940132-2940151 | MS.gene058404:CDS | 40.0% | |
ATACCTCATCAATCATAGGC+AGG | - | chr3.2:2941014-2941033 | None:intergenic | 40.0% | |
ATGAGCACTAACACAGATAC+CGG | - | chr3.2:2941202-2941221 | None:intergenic | 40.0% | |
ATTCCTGCCTATGATTGATG+AGG | + | chr3.2:2941008-2941027 | MS.gene058404:CDS | 40.0% | |
CCTTAACAAGGACAAGATCA+AGG | + | chr3.2:2939774-2939793 | MS.gene058404:CDS | 40.0% | |
CCTTGATCTTGTCCTTGTTA+AGG | - | chr3.2:2939777-2939796 | None:intergenic | 40.0% | |
CTAGAGTTTCCATCAGCAAT+TGG | + | chr3.2:2940130-2940149 | MS.gene058404:CDS | 40.0% | |
CTCGATGATGTTCGTTCTAA+TGG | + | chr3.2:2939899-2939918 | MS.gene058404:CDS | 40.0% | |
CTGATACTGCAACCTTAACA+AGG | + | chr3.2:2939762-2939781 | MS.gene058404:CDS | 40.0% | |
CTTCCGCTAATTATTGCAGT+CGG | - | chr3.2:2940422-2940441 | None:intergenic | 40.0% | |
GACCGATGAAGATGCATTTA+AGG | + | chr3.2:2942074-2942093 | MS.gene058404:CDS | 40.0% | |
GATTTGAACTATGTCCCTTG+AGG | - | chr3.2:2940605-2940624 | None:intergenic | 40.0% | |
GGAATTTCTCAAGTCACTTG+TGG | + | chr3.2:2942472-2942491 | MS.gene058404:intron | 40.0% | |
TACACTCAGTGAGCAACTTA+CGG | - | chr3.2:2941255-2941274 | None:intergenic | 40.0% | |
TAGTGCTCATAGATCATGAC+TGG | + | chr3.2:2941212-2941231 | MS.gene058404:intron | 40.0% | |
TCAGATACAGACTGTCTAAG+AGG | - | chr3.2:2940797-2940816 | None:intergenic | 40.0% | |
TCATGTTTGTACTAGCTCAG+TGG | + | chr3.2:2940560-2940579 | MS.gene058404:intron | 40.0% | |
TCTGAAGAAGACCTCAAGAT+AGG | + | chr3.2:2942631-2942650 | MS.gene058404:intron | 40.0% | |
TTATGCTGGTAGTCATGGAA+TGG | + | chr3.2:2940760-2940779 | MS.gene058404:CDS | 40.0% | |
TTCCATGACTACCAGCATAA+TGG | - | chr3.2:2940760-2940779 | None:intergenic | 40.0% | |
TTCCCGACTGCAATAATTAG+CGG | + | chr3.2:2940416-2940435 | MS.gene058404:CDS | 40.0% | |
TTCCGCTAATTATTGCAGTC+GGG | - | chr3.2:2940421-2940440 | None:intergenic | 40.0% | |
TTCTCAAGTCACTTGTGGTA+TGG | + | chr3.2:2942477-2942496 | MS.gene058404:intron | 40.0% | |
TTTACAGAGTTGGGATTTGG+TGG | + | chr3.2:2941630-2941649 | MS.gene058404:intron | 40.0% | |
! | CTGATGCTGCTTATTTAACC+TGG | + | chr3.2:2940005-2940024 | MS.gene058404:CDS | 40.0% |
! | TAAACCGCGTTGCTTTCTTT+AGG | - | chr3.2:2942248-2942267 | None:intergenic | 40.0% |
!! | GGCTATTTTGCGTGTATTCA+AGG | + | chr3.2:2941953-2941972 | MS.gene058404:intron | 40.0% |
!! | TCTTATTGGTGTCAGCATGT+CGG | + | chr3.2:2941156-2941175 | MS.gene058404:intron | 40.0% |
!! | TGTATCATTAGGGCCTTGTT+TGG | + | chr3.2:2942404-2942423 | MS.gene058404:intron | 40.0% |
ACAAGGACAAGATCAAGGCT+CGG | + | chr3.2:2939779-2939798 | MS.gene058404:CDS | 45.0% | |
ACCAGTGATTGACTGGGATA+AGG | + | chr3.2:2941871-2941890 | MS.gene058404:CDS | 45.0% | |
ACGATTAACTCATGGTCGGA+AGG | + | chr3.2:2941693-2941712 | MS.gene058404:CDS | 45.0% | |
ACGATTCCACGGAAGAAGAT+AGG | + | chr3.2:2939872-2939891 | MS.gene058404:CDS | 45.0% | |
CCAGTGATTGACTGGGATAA+GGG | + | chr3.2:2941872-2941891 | MS.gene058404:CDS | 45.0% | |
CGCTCAGGATTGTCAACAAT+TGG | - | chr3.2:2940232-2940251 | None:intergenic | 45.0% | |
CTATGTCCCTTGAGGTTACA+AGG | - | chr3.2:2940597-2940616 | None:intergenic | 45.0% | |
CTCCATTATGCTGGTAGTCA+TGG | + | chr3.2:2940755-2940774 | MS.gene058404:CDS | 45.0% | |
CTCTCTTTCTGATCCTTCAG+AGG | + | chr3.2:2942268-2942287 | MS.gene058404:CDS | 45.0% | |
GACATAGTTCAAATCCCCTC+TGG | + | chr3.2:2940610-2940629 | MS.gene058404:intron | 45.0% | |
GCTTATTTAACCTGGCTGGT+AGG | + | chr3.2:2940013-2940032 | MS.gene058404:intron | 45.0% | |
GTCAAACTTGTGGTGTATGC+AGG | + | chr3.2:2942445-2942464 | MS.gene058404:intron | 45.0% | |
TAGCGGAAGAAGTCGTGAAA+AGG | + | chr3.2:2940433-2940452 | MS.gene058404:CDS | 45.0% | |
TAGGGACAAAATAACCCCCT+TGG | - | chr3.2:2942764-2942783 | None:intergenic | 45.0% | |
TGAGCACTAACACAGATACC+GGG | - | chr3.2:2941201-2941220 | None:intergenic | 45.0% | |
TTATCGCAATGTAGACGAGG+AGG | + | chr3.2:2941330-2941349 | MS.gene058404:CDS | 45.0% | |
! | CATGCTGTTTGCTAGTGCAT+TGG | + | chr3.2:2942372-2942391 | MS.gene058404:intron | 45.0% |
! | GAGGAGCATGATTTGTCTTC+AGG | - | chr3.2:2939736-2939755 | None:intergenic | 45.0% |
! | GCGTGCTGCTGTTAAAAATG+TGG | + | chr3.2:2940385-2940404 | MS.gene058404:CDS | 45.0% |
! | TGACTGGCTCATGTTTATGC+AGG | + | chr3.2:2941228-2941247 | MS.gene058404:intron | 45.0% |
! | TGCTGCTTATTTAACCTGGC+TGG | + | chr3.2:2940009-2940028 | MS.gene058404:CDS | 45.0% |
!!! | ACCGTAACAGGTTTTGAGTG+AGG | + | chr3.2:2942187-2942206 | MS.gene058404:intron | 45.0% |
AGCTCGACCTTGTAACCTCA+AGG | + | chr3.2:2940587-2940606 | MS.gene058404:intron | 50.0% | |
AGGTTCGACCAGTGATTGAC+TGG | + | chr3.2:2941864-2941883 | MS.gene058404:CDS | 50.0% | |
ATAGGCAGGAATTCAGCAGC+AGG | - | chr3.2:2941000-2941019 | None:intergenic | 50.0% | |
CCCTTATCCCAGTCAATCAC+TGG | - | chr3.2:2941875-2941894 | None:intergenic | 50.0% | |
CGCTCCTAAAGAAAGCAACG+CGG | + | chr3.2:2942241-2942260 | MS.gene058404:CDS | 50.0% | |
CTTAGTGTTAGTGTCGTGCC+CGG | + | chr3.2:2941180-2941199 | MS.gene058404:intron | 50.0% | |
CTTGTGGTGTATGCAGGTCA+TGG | + | chr3.2:2942451-2942470 | MS.gene058404:intron | 50.0% | |
GCTCGACCTTGTAACCTCAA+GGG | + | chr3.2:2940588-2940607 | MS.gene058404:intron | 50.0% | |
GGTTCGACCAGTGATTGACT+GGG | + | chr3.2:2941865-2941884 | MS.gene058404:CDS | 50.0% | |
GTATGTGTTTCCTACCAGCC+AGG | - | chr3.2:2940026-2940045 | None:intergenic | 50.0% | |
GTCCATCGCTAACGATTCCA+CGG | + | chr3.2:2939861-2939880 | MS.gene058404:CDS | 50.0% | |
GTTGCAGTATCAGCAATGCG+AGG | - | chr3.2:2939755-2939774 | None:intergenic | 50.0% | |
TCAAAGGCCCCAATTGCTGA+TGG | - | chr3.2:2940142-2940161 | None:intergenic | 50.0% | |
TTCCGTGGAATCGTTAGCGA+TGG | - | chr3.2:2939866-2939885 | None:intergenic | 50.0% | |
! | ACAGTGCTATTCGCCTTTGC+AGG | - | chr3.2:2940285-2940304 | None:intergenic | 50.0% |
! | CGCGTTGCTTTCTTTAGGAG+CGG | - | chr3.2:2942243-2942262 | None:intergenic | 50.0% |
! | GGAGAGCATGACAGACTTGA+AGG | - | chr3.2:2939815-2939834 | None:intergenic | 50.0% |
GCAGGAATTCAGCAGCAGGT+TGG | - | chr3.2:2940996-2941015 | None:intergenic | 55.0% | |
! | TCGGACATGAAAGCACGCTC+AGG | - | chr3.2:2940247-2940266 | None:intergenic | 55.0% |
!! | ACAAGATCAAGGCTCGGTGC+AGG | + | chr3.2:2939785-2939804 | MS.gene058404:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 2939728 | 2942784 | 2939728 | ID=MS.gene058404 |
chr3.2 | mRNA | 2939728 | 2942784 | 2939728 | ID=MS.gene058404.t1;Parent=MS.gene058404 |
chr3.2 | exon | 2939728 | 2940030 | 2939728 | ID=MS.gene058404.t1.exon1;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2939728 | 2940030 | 2939728 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2940130 | 2940270 | 2940130 | ID=MS.gene058404.t1.exon2;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2940130 | 2940270 | 2940130 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2940383 | 2940454 | 2940383 | ID=MS.gene058404.t1.exon3;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2940383 | 2940454 | 2940383 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2940728 | 2940853 | 2940728 | ID=MS.gene058404.t1.exon4;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2940728 | 2940853 | 2940728 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2940973 | 2941029 | 2940973 | ID=MS.gene058404.t1.exon5;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2940973 | 2941029 | 2940973 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2941250 | 2941351 | 2941250 | ID=MS.gene058404.t1.exon6;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2941250 | 2941351 | 2941250 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2941637 | 2941714 | 2941637 | ID=MS.gene058404.t1.exon7;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2941637 | 2941714 | 2941637 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2941857 | 2941926 | 2941857 | ID=MS.gene058404.t1.exon8;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2941857 | 2941926 | 2941857 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2942025 | 2942095 | 2942025 | ID=MS.gene058404.t1.exon9;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2942025 | 2942095 | 2942025 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2942197 | 2942289 | 2942197 | ID=MS.gene058404.t1.exon10;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2942197 | 2942289 | 2942197 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
chr3.2 | exon | 2942743 | 2942784 | 2942743 | ID=MS.gene058404.t1.exon11;Parent=MS.gene058404.t1 |
chr3.2 | CDS | 2942743 | 2942784 | 2942743 | ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1 |
Gene Sequence |
Protein sequence |