AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058404


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058404.t1 MTR_3g008500 98.113 371 7 0 1 371 1 371 0.0 753
MS.gene058404.t1 MTR_4g036090 73.529 374 89 4 1 371 1 367 0.0 550
MS.gene058404.t1 MTR_4g036090 72.063 383 97 4 1 380 1 376 0.0 548
MS.gene058404.t1 MTR_4g101600 60.963 374 138 5 1 371 1 369 9.79e-157 446
MS.gene058404.t1 MTR_8g090330 52.450 347 146 4 25 371 17 344 3.18e-123 360
MS.gene058404.t1 MTR_3g074180 54.717 318 122 4 58 374 53 349 3.50e-120 353
MS.gene058404.t1 MTR_5g063080 53.548 310 124 3 62 371 69 358 7.39e-113 334
MS.gene058404.t1 MTR_3g091010 54.804 281 120 4 95 371 64 341 1.12e-106 318
MS.gene058404.t1 MTR_8g027765 52.158 278 132 1 95 371 20 297 4.22e-102 305
MS.gene058404.t1 MTR_8g090330 51.536 293 123 4 25 317 17 290 3.22e-97 292
MS.gene058404.t1 MTR_4g036685 58.672 271 83 10 70 327 1 255 8.26e-90 271
MS.gene058404.t1 MTR_4g128870 43.220 118 36 4 120 237 6 92 3.87e-20 84.7
MS.gene058404.t1 MTR_4g080160 27.899 276 154 12 114 371 588 836 5.24e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058404.t1 AT4G22590 62.534 371 124 2 1 371 1 356 8.51e-162 459
MS.gene058404.t1 AT5G51460 59.524 378 136 6 1 371 1 368 1.40e-157 448
MS.gene058404.t1 AT5G51460 59.524 378 136 6 1 371 1 368 1.40e-157 448
MS.gene058404.t1 AT5G51460 59.367 379 136 7 1 371 1 369 8.25e-156 444
MS.gene058404.t1 AT5G51460 59.367 379 136 7 1 371 1 369 8.25e-156 444
MS.gene058404.t1 AT5G51460 59.367 379 136 7 1 371 1 369 8.25e-156 444
MS.gene058404.t1 AT4G12430 62.534 371 115 4 1 371 1 347 8.65e-153 436
MS.gene058404.t1 AT1G35910 55.723 332 129 4 45 371 32 350 4.60e-124 363
MS.gene058404.t1 AT4G39770 57.143 308 111 2 64 371 45 331 1.40e-118 347
MS.gene058404.t1 AT4G39770 57.143 308 111 2 64 371 45 331 2.34e-118 347
MS.gene058404.t1 AT1G78090 50.284 352 145 7 31 371 23 355 1.86e-115 340
MS.gene058404.t1 AT1G78090 50.284 352 145 7 31 371 23 355 3.52e-115 340
MS.gene058404.t1 AT5G10100 53.376 311 127 3 62 371 58 351 4.59e-115 339
MS.gene058404.t1 AT5G10100 53.376 311 127 3 62 371 58 351 5.55e-115 340
MS.gene058404.t1 AT5G10100 53.376 311 127 3 62 371 69 362 6.91e-115 340
MS.gene058404.t1 AT5G65140 48.753 361 157 4 22 371 11 354 1.67e-113 336
MS.gene058404.t1 AT2G22190 54.575 306 115 2 66 371 55 336 5.58e-112 331
MS.gene058404.t1 AT2G22190 54.575 306 115 2 66 371 55 336 7.74e-112 331
MS.gene058404.t1 AT1G22210 54.426 305 123 2 67 371 14 302 1.15e-110 327
MS.gene058404.t1 AT5G65140 48.338 331 143 4 22 341 11 324 1.98e-102 306
MS.gene058404.t1 AT5G10100 49.839 311 118 4 62 371 69 342 1.51e-100 302
MS.gene058404.t1 AT5G65140 52.344 256 105 2 62 317 62 300 2.73e-89 272
MS.gene058404.t1 AT1G70290 28.014 282 154 14 119 381 545 796 3.58e-11 65.5
MS.gene058404.t1 AT1G70290 28.014 282 154 14 119 381 583 834 4.24e-11 65.1

Find 82 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCGATGAAGATGCATTTA+AGG 0.231051 3.2:+2942074 MS.gene058404:CDS
CTCGATGATGTTCGTTCTAA+TGG 0.251756 3.2:+2939899 MS.gene058404:CDS
AGTGAGGTTAATAAAGGTTT+TGG 0.252937 3.2:+2942203 MS.gene058404:CDS
TCAGTAGACCTAATGCAATT+AGG 0.262806 3.2:-2940824 None:intergenic
AGAAAAGTTGAAGTGTTTGT+AGG 0.326919 3.2:-2939833 None:intergenic
TAATTTACAGAGTTGGGATT+TGG 0.331008 3.2:+2941627 MS.gene058404:intron
AGTCATGGAATGGACATAAT+TGG 0.337966 3.2:+2940770 MS.gene058404:CDS
GAGGAGCATGATTTGTCTTC+AGG 0.346590 3.2:-2939733 None:intergenic
CAGTAGACCTAATGCAATTA+GGG 0.349056 3.2:-2940823 None:intergenic
CTAGAGTTTCCATCAGCAAT+TGG 0.374834 3.2:+2940130 MS.gene058404:CDS
CGCTCAGGATTGTCAACAAT+TGG 0.385451 3.2:-2940229 None:intergenic
TAAACCGCGTTGCTTTCTTT+AGG 0.393472 3.2:-2942245 None:intergenic
TAGAGTTTCCATCAGCAATT+GGG 0.394464 3.2:+2940131 MS.gene058404:CDS
ATAATCACCCTAATTGCATT+AGG 0.394713 3.2:+2940816 MS.gene058404:CDS
AAGAAAATATCGATGGATAT+TGG 0.400122 3.2:+2939959 MS.gene058404:CDS
CCTTGATCTTGTCCTTGTTA+AGG 0.404552 3.2:-2939774 None:intergenic
ACCAGTGATTGACTGGGATA+AGG 0.413046 3.2:+2941871 MS.gene058404:CDS
TTCCATGACTACCAGCATAA+TGG 0.413429 3.2:-2940757 None:intergenic
CCAGTGATTGACTGGGATAA+GGG 0.414884 3.2:+2941872 MS.gene058404:CDS
CTTCAGGTACATGAATTTGT+TGG 0.418768 3.2:+2940722 MS.gene058404:intron
AGGTTCGACCAGTGATTGAC+TGG 0.424416 3.2:+2941864 MS.gene058404:CDS
ACGATTCCACGGAAGAAGAT+AGG 0.432313 3.2:+2939872 MS.gene058404:CDS
TGATTTGTCTTCAGGTCCAT+TGG 0.443083 3.2:-2939725 None:intergenic
CAGGATATTACATACATTGT+CGG 0.457666 3.2:-2940263 None:intergenic
CCCTTATCCCAGTCAATCAC+TGG 0.457934 3.2:-2941872 None:intergenic
ATGCATACCTCATCAATCAT+AGG 0.460691 3.2:-2941015 None:intergenic
TGCTGCTTATTTAACCTGGC+TGG 0.464042 3.2:+2940009 MS.gene058404:CDS
TACACTCAGTGAGCAACTTA+CGG 0.466005 3.2:-2941252 None:intergenic
TTCCGCTAATTATTGCAGTC+GGG 0.470603 3.2:-2940418 None:intergenic
CTCCATTATGCTGGTAGTCA+TGG 0.474044 3.2:+2940755 MS.gene058404:CDS
CAAATTACTAACCTTGCAAA+AGG 0.474768 3.2:+2940163 MS.gene058404:CDS
CTGATGCTGCTTATTTAACC+TGG 0.480480 3.2:+2940005 MS.gene058404:CDS
TTTACAGAGTTGGGATTTGG+TGG 0.481910 3.2:+2941630 MS.gene058404:intron
GGAGAGCATGACAGACTTGA+AGG 0.486250 3.2:-2939812 None:intergenic
ATGATGTTCGTTCTAATGGT+TGG 0.487662 3.2:+2939903 MS.gene058404:CDS
CATTGTTTCTTGATTACGAT+GGG 0.487850 3.2:+2940197 MS.gene058404:CDS
CTTCCGCTAATTATTGCAGT+CGG 0.489019 3.2:-2940419 None:intergenic
TCAGATACAGACTGTCTAAG+AGG 0.504048 3.2:-2940794 None:intergenic
TTCCCGACTGCAATAATTAG+CGG 0.504745 3.2:+2940416 MS.gene058404:CDS
ACAAGATCAAGGCTCGGTGC+AGG 0.507337 3.2:+2939785 MS.gene058404:CDS
AAGGTTAGTAATTTGTTCAA+AGG 0.511038 3.2:-2940155 None:intergenic
TTCCGTGGAATCGTTAGCGA+TGG 0.515888 3.2:-2939863 None:intergenic
CATTAGGTCTACTGATAAGA+AGG 0.516416 3.2:+2940832 MS.gene058404:CDS
CTCTCTTTCTGATCCTTCAG+AGG 0.524465 3.2:+2942268 MS.gene058404:CDS
TAGCGGAAGAAGTCGTGAAA+AGG 0.529643 3.2:+2940433 MS.gene058404:CDS
AACCTTAAATGCATCTTCAT+CGG 0.535866 3.2:-2942076 None:intergenic
TCAAAGGCCCCAATTGCTGA+TGG 0.536930 3.2:-2940139 None:intergenic
TACTCACAAGAAAATATCGA+TGG 0.547593 3.2:+2939952 MS.gene058404:CDS
CCATGAGTTAATCGTAAATG+TGG 0.548944 3.2:-2941685 None:intergenic
TCGGACATGAAAGCACGCTC+AGG 0.550059 3.2:-2940244 None:intergenic
TTAACAGATCTCCATTATGC+TGG 0.550969 3.2:+2940746 MS.gene058404:CDS
GATGTGCTAGCTATATATAT+TGG 0.554483 3.2:+2942042 MS.gene058404:CDS
ACCATAAGAATTACCTCTGA+AGG 0.557104 3.2:-2942281 None:intergenic
CCTTAACAAGGACAAGATCA+AGG 0.569283 3.2:+2939774 MS.gene058404:CDS
TTATGCTGGTAGTCATGGAA+TGG 0.572153 3.2:+2940760 MS.gene058404:CDS
CTGATACTGCAACCTTAACA+AGG 0.577184 3.2:+2939762 MS.gene058404:CDS
GCAGGAATTCAGCAGCAGGT+TGG 0.579369 3.2:-2940993 None:intergenic
ATACCTCATCAATCATAGGC+AGG 0.580942 3.2:-2941011 None:intergenic
GTATGTGTTTCCTACCAGCC+AGG 0.583641 3.2:-2940023 None:intergenic
ATAGGCAGGAATTCAGCAGC+AGG 0.587802 3.2:-2940997 None:intergenic
CCACATTTACGATTAACTCA+TGG 0.588038 3.2:+2941685 MS.gene058404:CDS
AAGATTATCAAAATCTACCA+AGG 0.590336 3.2:+2942744 MS.gene058404:CDS
CTATATATATTGGTGACGAT+CGG 0.591664 3.2:+2942052 MS.gene058404:CDS
CGCGTTGCTTTCTTTAGGAG+CGG 0.596598 3.2:-2942240 None:intergenic
AGAATTCCTATCTTCTTCCG+TGG 0.605970 3.2:-2939878 None:intergenic
ATATCGATGGATATTGGTCA+TGG 0.606467 3.2:+2939965 MS.gene058404:CDS
GCATTGTTTCTTGATTACGA+TGG 0.607237 3.2:+2940196 MS.gene058404:CDS
GTCCATCGCTAACGATTCCA+CGG 0.607941 3.2:+2939861 MS.gene058404:CDS
ACGATTAACTCATGGTCGGA+AGG 0.614382 3.2:+2941693 MS.gene058404:CDS
AGATTATCAAAATCTACCAA+GGG 0.625044 3.2:+2942745 MS.gene058404:CDS
AGAGTTTCCATCAGCAATTG+GGG 0.625927 3.2:+2940132 MS.gene058404:CDS
GAGTGTACAAAAGACATCAA+AGG 0.636577 3.2:+2941268 MS.gene058404:CDS
ATTTACGATTAACTCATGGT+CGG 0.654472 3.2:+2941689 MS.gene058404:CDS
ATTCCTGCCTATGATTGATG+AGG 0.658507 3.2:+2941008 MS.gene058404:CDS
ACAAGGACAAGATCAAGGCT+CGG 0.658800 3.2:+2939779 MS.gene058404:CDS
GATTATCAAAATCTACCAAG+GGG 0.673290 3.2:+2942746 MS.gene058404:CDS
GGTTCGACCAGTGATTGACT+GGG 0.682318 3.2:+2941865 MS.gene058404:CDS
ACATTATCGCAATGTAGACG+AGG 0.713352 3.2:+2941327 MS.gene058404:CDS
TTATCGCAATGTAGACGAGG+AGG 0.714342 3.2:+2941330 MS.gene058404:CDS
CGCTCCTAAAGAAAGCAACG+CGG 0.719562 3.2:+2942241 MS.gene058404:CDS
GTTGCAGTATCAGCAATGCG+AGG 0.729280 3.2:-2939752 None:intergenic
ATTATCAAAATCTACCAAGG+GGG 0.730497 3.2:+2942747 MS.gene058404:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATAACTGATATAAAA+TGG + chr3.2:2942164-2942183 MS.gene058404:intron 10.0%
!!! TTAATTTGTTGATTATATAA+TGG + chr3.2:2941932-2941951 MS.gene058404:intron 10.0%
!! AGAAGATTATAAATCAATAT+AGG - chr3.2:2940943-2940962 None:intergenic 15.0%
!! GAAGATTATAAATCAATATA+GGG - chr3.2:2940942-2940961 None:intergenic 15.0%
!! TATATCAGTTATATAAAGTA+AGG - chr3.2:2942161-2942180 None:intergenic 15.0%
!!! AATCTAGAATAAAAATTGAT+AGG - chr3.2:2941074-2941093 None:intergenic 15.0%
!!! TATAATCTTCTAAAATTACA+GGG + chr3.2:2940952-2940971 MS.gene058404:intron 15.0%
!!! TTATAATCTTCTAAAATTAC+AGG + chr3.2:2940951-2940970 MS.gene058404:intron 15.0%
!! GAAAACAACAACAAAAAAAT+AGG - chr3.2:2941416-2941435 None:intergenic 20.0%
!! GAATAATGTTTGTATCATTA+GGG + chr3.2:2942394-2942413 MS.gene058404:intron 20.0%
!! TGAAAATGAAACTAAATAAG+AGG - chr3.2:2941605-2941624 None:intergenic 20.0%
!! TGTAAAAAAATGTTGATGTT+AGG + chr3.2:2940668-2940687 MS.gene058404:intron 20.0%
!! TTCATATAATTTACAGAGTT+GGG + chr3.2:2941621-2941640 MS.gene058404:intron 20.0%
!! TTTCATATAATTTACAGAGT+TGG + chr3.2:2941620-2941639 MS.gene058404:intron 20.0%
!!! GAGAAAATTTCAATTTTCAA+GGG + chr3.2:2942587-2942606 MS.gene058404:intron 20.0%
!!! GTTAAAAATGGAATCATTTT+AGG - chr3.2:2941543-2941562 None:intergenic 20.0%
!!! TAAAGATAGATTCTGATTTT+GGG + chr3.2:2942557-2942576 MS.gene058404:intron 20.0%
!!! TCATTTTCTCAAATTCTTAT+TGG + chr3.2:2941142-2941161 MS.gene058404:intron 20.0%
!!! TGAGAAAATTTCAATTTTCA+AGG + chr3.2:2942586-2942605 MS.gene058404:intron 20.0%
!!! TGGTTGTAATTTAGTTTATA+TGG + chr3.2:2942300-2942319 MS.gene058404:intron 20.0%
!!! TTAAAGATAGATTCTGATTT+TGG + chr3.2:2942556-2942575 MS.gene058404:intron 20.0%
! AAAAGAGAAAAATGAAGTAC+AGG - chr3.2:2940495-2940514 None:intergenic 25.0%
! AAAATGTTATTCCTATCTTG+AGG - chr3.2:2942645-2942664 None:intergenic 25.0%
! AAGAAAATATCGATGGATAT+TGG + chr3.2:2939959-2939978 MS.gene058404:CDS 25.0%
! AAGATTATCAAAATCTACCA+AGG + chr3.2:2942744-2942763 MS.gene058404:CDS 25.0%
! ACAAGAGAAGAAAAATAATC+AGG - chr3.2:2940326-2940345 None:intergenic 25.0%
! AGATTATCAAAATCTACCAA+GGG + chr3.2:2942745-2942764 MS.gene058404:CDS 25.0%
! ATAACAGATGTCTCTTAAAA+AGG - chr3.2:2941801-2941820 None:intergenic 25.0%
! ATAAGTTGTTTATCCAAACA+AGG - chr3.2:2942420-2942439 None:intergenic 25.0%
! ATTTACATTTCTCTATATGC+AGG - chr3.2:2940531-2940550 None:intergenic 25.0%
! CTCTATAGTATAATGTATAG+AGG + chr3.2:2942508-2942527 MS.gene058404:intron 25.0%
! GCTGCAAAAATTGTAAAAAA+AGG - chr3.2:2940111-2940130 None:intergenic 25.0%
! GGAATAATGTTTGTATCATT+AGG + chr3.2:2942393-2942412 MS.gene058404:intron 25.0%
! GTAAAAAAAGGAAACGAATA+AGG - chr3.2:2940099-2940118 None:intergenic 25.0%
!! ATTTAAGGTTAATATGTTGC+TGG + chr3.2:2942089-2942108 MS.gene058404:intron 25.0%
!! CTTATTTAAAGTCAAACTTG+TGG + chr3.2:2942435-2942454 MS.gene058404:intron 25.0%
!! TATGTTTACTGATAATGTTC+AGG + chr3.2:2941835-2941854 MS.gene058404:intron 25.0%
!!! AAGGTTAGTAATTTGTTCAA+AGG - chr3.2:2940158-2940177 None:intergenic 25.0%
!!! TCTAGAAGTATCTTTCTAAA+GGG + chr3.2:2940915-2940934 MS.gene058404:intron 25.0%
!!! TTCTAGAAGTATCTTTCTAA+AGG + chr3.2:2940914-2940933 MS.gene058404:intron 25.0%
AACCTTAAATGCATCTTCAT+CGG - chr3.2:2942079-2942098 None:intergenic 30.0%
AGAAATCATGAACTGAAAAG+TGG - chr3.2:2940860-2940879 None:intergenic 30.0%
ATAATCACCCTAATTGCATT+AGG + chr3.2:2940816-2940835 MS.gene058404:CDS 30.0%
ATGTATGTAATATCCTGCAA+AGG + chr3.2:2940269-2940288 MS.gene058404:intron 30.0%
ATTATCAAAATCTACCAAGG+GGG + chr3.2:2942747-2942766 MS.gene058404:CDS 30.0%
ATTTACGATTAACTCATGGT+CGG + chr3.2:2941689-2941708 MS.gene058404:CDS 30.0%
CAAATTACTAACCTTGCAAA+AGG + chr3.2:2940163-2940182 MS.gene058404:CDS 30.0%
CAGGATATTACATACATTGT+CGG - chr3.2:2940266-2940285 None:intergenic 30.0%
GAGAATCAAAAAGGAAAGAA+GGG - chr3.2:2941370-2941389 None:intergenic 30.0%
GATGTGCTAGCTATATATAT+TGG + chr3.2:2942042-2942061 MS.gene058404:CDS 30.0%
GATTATCAAAATCTACCAAG+GGG + chr3.2:2942746-2942765 MS.gene058404:CDS 30.0%
TAATTTACAGAGTTGGGATT+TGG + chr3.2:2941627-2941646 MS.gene058404:intron 30.0%
TACTCACAAGAAAATATCGA+TGG + chr3.2:2939952-2939971 MS.gene058404:CDS 30.0%
TCGACAACAAATTACATAGA+GGG - chr3.2:2940057-2940076 None:intergenic 30.0%
TGTAATACATATGTCAGTGT+TGG - chr3.2:2941112-2941131 None:intergenic 30.0%
TTCATGTACCTGAAGAAATA+AGG - chr3.2:2940717-2940736 None:intergenic 30.0%
TTCGACAACAAATTACATAG+AGG - chr3.2:2940058-2940077 None:intergenic 30.0%
TTGTGGAAGCTGTAAATTAA+TGG + chr3.2:2942695-2942714 MS.gene058404:intron 30.0%
! ACATTTTTGCTTGAATCACT+TGG + chr3.2:2941905-2941924 MS.gene058404:CDS 30.0%
! ACGCGTTTTTGATATTATGA+AGG + chr3.2:2941657-2941676 MS.gene058404:CDS 30.0%
! AGAAAAGTTGAAGTGTTTGT+AGG - chr3.2:2939836-2939855 None:intergenic 30.0%
! AGTGAGGTTAATAAAGGTTT+TGG + chr3.2:2942203-2942222 MS.gene058404:CDS 30.0%
! ATCGATATTTTCTTGTGAGT+AGG - chr3.2:2939953-2939972 None:intergenic 30.0%
! CATTGTTTCTTGATTACGAT+GGG + chr3.2:2940197-2940216 MS.gene058404:CDS 30.0%
! GAAAAGTTTAGATCTAGAAC+TGG - chr3.2:2941726-2941745 None:intergenic 30.0%
! GCAATTTTGTACATTTGCTT+TGG + chr3.2:2942342-2942361 MS.gene058404:intron 30.0%
!! CTATATATATTGGTGACGAT+CGG + chr3.2:2942052-2942071 MS.gene058404:CDS 30.0%
!! GACTTGTTACAAAACTTTAG+TGG + chr3.2:2941767-2941786 MS.gene058404:intron 30.0%
!! GTTTTGAGTGAGGTTAATAA+AGG + chr3.2:2942197-2942216 MS.gene058404:CDS 30.0%
!! TCTTCTAAAATTACAGGGTA+AGG + chr3.2:2940957-2940976 MS.gene058404:intron 30.0%
!! TGATAATGTTCAGGTTTTAG+AGG + chr3.2:2941844-2941863 MS.gene058404:intron 30.0%
!! TTCAATTTTCAAGGGTTTCT+TGG + chr3.2:2942595-2942614 MS.gene058404:intron 30.0%
!!! ATAGATTCTGATTTTGGGTT+TGG + chr3.2:2942562-2942581 MS.gene058404:intron 30.0%
AAATAAGGTGCAACAATGGT+TGG - chr3.2:2940702-2940721 None:intergenic 35.0%
ACCATAAGAATTACCTCTGA+AGG - chr3.2:2942284-2942303 None:intergenic 35.0%
ACTTATCGCGTATTTCATCA+TGG + chr3.2:2941565-2941584 MS.gene058404:intron 35.0%
AGTCATGGAATGGACATAAT+TGG + chr3.2:2940770-2940789 MS.gene058404:CDS 35.0%
ATATCGATGGATATTGGTCA+TGG + chr3.2:2939965-2939984 MS.gene058404:CDS 35.0%
ATGATGTTCGTTCTAATGGT+TGG + chr3.2:2939903-2939922 MS.gene058404:CDS 35.0%
ATGCATACCTCATCAATCAT+AGG - chr3.2:2941018-2941037 None:intergenic 35.0%
CAGTAGACCTAATGCAATTA+GGG - chr3.2:2940826-2940845 None:intergenic 35.0%
CATTAGGTCTACTGATAAGA+AGG + chr3.2:2940832-2940851 MS.gene058404:CDS 35.0%
CCACATTTACGATTAACTCA+TGG + chr3.2:2941685-2941704 MS.gene058404:CDS 35.0%
CCATGAGTTAATCGTAAATG+TGG - chr3.2:2941688-2941707 None:intergenic 35.0%
CGAGAATCAAAAAGGAAAGA+AGG - chr3.2:2941371-2941390 None:intergenic 35.0%
CTTCAGGTACATGAATTTGT+TGG + chr3.2:2940722-2940741 MS.gene058404:intron 35.0%
GAAGAAATAAGGTGCAACAA+TGG - chr3.2:2940706-2940725 None:intergenic 35.0%
GAGTGTACAAAAGACATCAA+AGG + chr3.2:2941268-2941287 MS.gene058404:CDS 35.0%
GATATAAAATGGACCGTAAC+AGG + chr3.2:2942175-2942194 MS.gene058404:intron 35.0%
TACAAGAGCGAGAATCAAAA+AGG - chr3.2:2941379-2941398 None:intergenic 35.0%
TACAAGTAAAGTGACACTGA+TGG - chr3.2:2940652-2940671 None:intergenic 35.0%
TAGAGTTTCCATCAGCAATT+GGG + chr3.2:2940131-2940150 MS.gene058404:CDS 35.0%
TCAGTAGACCTAATGCAATT+AGG - chr3.2:2940827-2940846 None:intergenic 35.0%
TCCTTCAGAGGTAATTCTTA+TGG + chr3.2:2942280-2942299 MS.gene058404:intron 35.0%
TGATGAAATACGCGATAAGT+TGG - chr3.2:2941565-2941584 None:intergenic 35.0%
TTAACAGATCTCCATTATGC+TGG + chr3.2:2940746-2940765 MS.gene058404:CDS 35.0%
! AACACTTCAACTTTTCTGCA+TGG + chr3.2:2939839-2939858 MS.gene058404:CDS 35.0%
! CACGTGACATGTTTTCATTT+AGG + chr3.2:2942003-2942022 MS.gene058404:intron 35.0%
! CTATTTTCTTGCCTTTTGCA+AGG - chr3.2:2940177-2940196 None:intergenic 35.0%
! GCATTGTTTCTTGATTACGA+TGG + chr3.2:2940196-2940215 MS.gene058404:CDS 35.0%
! TTGTTGCACCTTATTTCTTC+AGG + chr3.2:2940706-2940725 MS.gene058404:intron 35.0%
!! CGCGATAAGTTGGTTAAAAA+TGG - chr3.2:2941555-2941574 None:intergenic 35.0%
!!! CTTTTTTCAACTGTACCAGA+GGG - chr3.2:2940628-2940647 None:intergenic 35.0%
!!! TCTTTTTTCAACTGTACCAG+AGG - chr3.2:2940629-2940648 None:intergenic 35.0%
!!! TTTTTTCAACTGTACCAGAG+GGG - chr3.2:2940627-2940646 None:intergenic 35.0%
!!! TTTTTTGCTCAAAGCTCTTG+TGG + chr3.2:2942678-2942697 MS.gene058404:intron 35.0%
ACATTATCGCAATGTAGACG+AGG + chr3.2:2941327-2941346 MS.gene058404:CDS 40.0%
ACCTCACTCAAAACCTGTTA+CGG - chr3.2:2942191-2942210 None:intergenic 40.0%
AGAATTCCTATCTTCTTCCG+TGG - chr3.2:2939881-2939900 None:intergenic 40.0%
AGAGTTTCCATCAGCAATTG+GGG + chr3.2:2940132-2940151 MS.gene058404:CDS 40.0%
ATACCTCATCAATCATAGGC+AGG - chr3.2:2941014-2941033 None:intergenic 40.0%
ATGAGCACTAACACAGATAC+CGG - chr3.2:2941202-2941221 None:intergenic 40.0%
ATTCCTGCCTATGATTGATG+AGG + chr3.2:2941008-2941027 MS.gene058404:CDS 40.0%
CCTTAACAAGGACAAGATCA+AGG + chr3.2:2939774-2939793 MS.gene058404:CDS 40.0%
CCTTGATCTTGTCCTTGTTA+AGG - chr3.2:2939777-2939796 None:intergenic 40.0%
CTAGAGTTTCCATCAGCAAT+TGG + chr3.2:2940130-2940149 MS.gene058404:CDS 40.0%
CTCGATGATGTTCGTTCTAA+TGG + chr3.2:2939899-2939918 MS.gene058404:CDS 40.0%
CTGATACTGCAACCTTAACA+AGG + chr3.2:2939762-2939781 MS.gene058404:CDS 40.0%
CTTCCGCTAATTATTGCAGT+CGG - chr3.2:2940422-2940441 None:intergenic 40.0%
GACCGATGAAGATGCATTTA+AGG + chr3.2:2942074-2942093 MS.gene058404:CDS 40.0%
GATTTGAACTATGTCCCTTG+AGG - chr3.2:2940605-2940624 None:intergenic 40.0%
GGAATTTCTCAAGTCACTTG+TGG + chr3.2:2942472-2942491 MS.gene058404:intron 40.0%
TACACTCAGTGAGCAACTTA+CGG - chr3.2:2941255-2941274 None:intergenic 40.0%
TAGTGCTCATAGATCATGAC+TGG + chr3.2:2941212-2941231 MS.gene058404:intron 40.0%
TCAGATACAGACTGTCTAAG+AGG - chr3.2:2940797-2940816 None:intergenic 40.0%
TCATGTTTGTACTAGCTCAG+TGG + chr3.2:2940560-2940579 MS.gene058404:intron 40.0%
TCTGAAGAAGACCTCAAGAT+AGG + chr3.2:2942631-2942650 MS.gene058404:intron 40.0%
TTATGCTGGTAGTCATGGAA+TGG + chr3.2:2940760-2940779 MS.gene058404:CDS 40.0%
TTCCATGACTACCAGCATAA+TGG - chr3.2:2940760-2940779 None:intergenic 40.0%
TTCCCGACTGCAATAATTAG+CGG + chr3.2:2940416-2940435 MS.gene058404:CDS 40.0%
TTCCGCTAATTATTGCAGTC+GGG - chr3.2:2940421-2940440 None:intergenic 40.0%
TTCTCAAGTCACTTGTGGTA+TGG + chr3.2:2942477-2942496 MS.gene058404:intron 40.0%
TTTACAGAGTTGGGATTTGG+TGG + chr3.2:2941630-2941649 MS.gene058404:intron 40.0%
! CTGATGCTGCTTATTTAACC+TGG + chr3.2:2940005-2940024 MS.gene058404:CDS 40.0%
! TAAACCGCGTTGCTTTCTTT+AGG - chr3.2:2942248-2942267 None:intergenic 40.0%
!! GGCTATTTTGCGTGTATTCA+AGG + chr3.2:2941953-2941972 MS.gene058404:intron 40.0%
!! TCTTATTGGTGTCAGCATGT+CGG + chr3.2:2941156-2941175 MS.gene058404:intron 40.0%
!! TGTATCATTAGGGCCTTGTT+TGG + chr3.2:2942404-2942423 MS.gene058404:intron 40.0%
ACAAGGACAAGATCAAGGCT+CGG + chr3.2:2939779-2939798 MS.gene058404:CDS 45.0%
ACCAGTGATTGACTGGGATA+AGG + chr3.2:2941871-2941890 MS.gene058404:CDS 45.0%
ACGATTAACTCATGGTCGGA+AGG + chr3.2:2941693-2941712 MS.gene058404:CDS 45.0%
ACGATTCCACGGAAGAAGAT+AGG + chr3.2:2939872-2939891 MS.gene058404:CDS 45.0%
CCAGTGATTGACTGGGATAA+GGG + chr3.2:2941872-2941891 MS.gene058404:CDS 45.0%
CGCTCAGGATTGTCAACAAT+TGG - chr3.2:2940232-2940251 None:intergenic 45.0%
CTATGTCCCTTGAGGTTACA+AGG - chr3.2:2940597-2940616 None:intergenic 45.0%
CTCCATTATGCTGGTAGTCA+TGG + chr3.2:2940755-2940774 MS.gene058404:CDS 45.0%
CTCTCTTTCTGATCCTTCAG+AGG + chr3.2:2942268-2942287 MS.gene058404:CDS 45.0%
GACATAGTTCAAATCCCCTC+TGG + chr3.2:2940610-2940629 MS.gene058404:intron 45.0%
GCTTATTTAACCTGGCTGGT+AGG + chr3.2:2940013-2940032 MS.gene058404:intron 45.0%
GTCAAACTTGTGGTGTATGC+AGG + chr3.2:2942445-2942464 MS.gene058404:intron 45.0%
TAGCGGAAGAAGTCGTGAAA+AGG + chr3.2:2940433-2940452 MS.gene058404:CDS 45.0%
TAGGGACAAAATAACCCCCT+TGG - chr3.2:2942764-2942783 None:intergenic 45.0%
TGAGCACTAACACAGATACC+GGG - chr3.2:2941201-2941220 None:intergenic 45.0%
TTATCGCAATGTAGACGAGG+AGG + chr3.2:2941330-2941349 MS.gene058404:CDS 45.0%
! CATGCTGTTTGCTAGTGCAT+TGG + chr3.2:2942372-2942391 MS.gene058404:intron 45.0%
! GAGGAGCATGATTTGTCTTC+AGG - chr3.2:2939736-2939755 None:intergenic 45.0%
! GCGTGCTGCTGTTAAAAATG+TGG + chr3.2:2940385-2940404 MS.gene058404:CDS 45.0%
! TGACTGGCTCATGTTTATGC+AGG + chr3.2:2941228-2941247 MS.gene058404:intron 45.0%
! TGCTGCTTATTTAACCTGGC+TGG + chr3.2:2940009-2940028 MS.gene058404:CDS 45.0%
!!! ACCGTAACAGGTTTTGAGTG+AGG + chr3.2:2942187-2942206 MS.gene058404:intron 45.0%
AGCTCGACCTTGTAACCTCA+AGG + chr3.2:2940587-2940606 MS.gene058404:intron 50.0%
AGGTTCGACCAGTGATTGAC+TGG + chr3.2:2941864-2941883 MS.gene058404:CDS 50.0%
ATAGGCAGGAATTCAGCAGC+AGG - chr3.2:2941000-2941019 None:intergenic 50.0%
CCCTTATCCCAGTCAATCAC+TGG - chr3.2:2941875-2941894 None:intergenic 50.0%
CGCTCCTAAAGAAAGCAACG+CGG + chr3.2:2942241-2942260 MS.gene058404:CDS 50.0%
CTTAGTGTTAGTGTCGTGCC+CGG + chr3.2:2941180-2941199 MS.gene058404:intron 50.0%
CTTGTGGTGTATGCAGGTCA+TGG + chr3.2:2942451-2942470 MS.gene058404:intron 50.0%
GCTCGACCTTGTAACCTCAA+GGG + chr3.2:2940588-2940607 MS.gene058404:intron 50.0%
GGTTCGACCAGTGATTGACT+GGG + chr3.2:2941865-2941884 MS.gene058404:CDS 50.0%
GTATGTGTTTCCTACCAGCC+AGG - chr3.2:2940026-2940045 None:intergenic 50.0%
GTCCATCGCTAACGATTCCA+CGG + chr3.2:2939861-2939880 MS.gene058404:CDS 50.0%
GTTGCAGTATCAGCAATGCG+AGG - chr3.2:2939755-2939774 None:intergenic 50.0%
TCAAAGGCCCCAATTGCTGA+TGG - chr3.2:2940142-2940161 None:intergenic 50.0%
TTCCGTGGAATCGTTAGCGA+TGG - chr3.2:2939866-2939885 None:intergenic 50.0%
! ACAGTGCTATTCGCCTTTGC+AGG - chr3.2:2940285-2940304 None:intergenic 50.0%
! CGCGTTGCTTTCTTTAGGAG+CGG - chr3.2:2942243-2942262 None:intergenic 50.0%
! GGAGAGCATGACAGACTTGA+AGG - chr3.2:2939815-2939834 None:intergenic 50.0%
GCAGGAATTCAGCAGCAGGT+TGG - chr3.2:2940996-2941015 None:intergenic 55.0%
! TCGGACATGAAAGCACGCTC+AGG - chr3.2:2940247-2940266 None:intergenic 55.0%
!! ACAAGATCAAGGCTCGGTGC+AGG + chr3.2:2939785-2939804 MS.gene058404:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 2939728 2942784 2939728 ID=MS.gene058404
chr3.2 mRNA 2939728 2942784 2939728 ID=MS.gene058404.t1;Parent=MS.gene058404
chr3.2 exon 2939728 2940030 2939728 ID=MS.gene058404.t1.exon1;Parent=MS.gene058404.t1
chr3.2 CDS 2939728 2940030 2939728 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2940130 2940270 2940130 ID=MS.gene058404.t1.exon2;Parent=MS.gene058404.t1
chr3.2 CDS 2940130 2940270 2940130 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2940383 2940454 2940383 ID=MS.gene058404.t1.exon3;Parent=MS.gene058404.t1
chr3.2 CDS 2940383 2940454 2940383 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2940728 2940853 2940728 ID=MS.gene058404.t1.exon4;Parent=MS.gene058404.t1
chr3.2 CDS 2940728 2940853 2940728 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2940973 2941029 2940973 ID=MS.gene058404.t1.exon5;Parent=MS.gene058404.t1
chr3.2 CDS 2940973 2941029 2940973 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2941250 2941351 2941250 ID=MS.gene058404.t1.exon6;Parent=MS.gene058404.t1
chr3.2 CDS 2941250 2941351 2941250 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2941637 2941714 2941637 ID=MS.gene058404.t1.exon7;Parent=MS.gene058404.t1
chr3.2 CDS 2941637 2941714 2941637 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2941857 2941926 2941857 ID=MS.gene058404.t1.exon8;Parent=MS.gene058404.t1
chr3.2 CDS 2941857 2941926 2941857 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2942025 2942095 2942025 ID=MS.gene058404.t1.exon9;Parent=MS.gene058404.t1
chr3.2 CDS 2942025 2942095 2942025 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2942197 2942289 2942197 ID=MS.gene058404.t1.exon10;Parent=MS.gene058404.t1
chr3.2 CDS 2942197 2942289 2942197 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
chr3.2 exon 2942743 2942784 2942743 ID=MS.gene058404.t1.exon11;Parent=MS.gene058404.t1
chr3.2 CDS 2942743 2942784 2942743 ID=cds.MS.gene058404.t1;Parent=MS.gene058404.t1
Gene Sequence

>MS.gene058404

ATGGACCTGAAGACAAATCATGCTCCTCGCATTGCTGATACTGCAACCTTAACAAGGACAAGATCAAGGCTCGGTGCAGGCGCACCTTCAAGTCTGTCATGCTCTCCTACAAACACTTCAACTTTTCTGCATGGTCCATCGCTAACGATTCCACGGAAGAAGATAGGAATTCTCGATGATGTTCGTTCTAATGGTTGGCTTGACGCAATGAGATCATCGTCTCCTACTCACAAGAAAATATCGATGGATATTGGTCATGGTGTTGCATCTTCTGAAGCTGATGCTGCTTATTTAACCTGGCTGGTAGGAAACACATACTAGTACTACCCTCTATGTAATTTGTTGTCGAAGTTCAGTTTGTGCAGCATCCTTATTCGTTTCCTTTTTTTACAATTTTTGCAGCTAGAGTTTCCATCAGCAATTGGGGCCTTTGAACAAATTACTAACCTTGCAAAAGGCAAGAAAATAGCATTGTTTCTTGATTACGATGGGACTCTTTCGCCAATTGTTGACAATCCTGAGCGTGCTTTCATGTCCGACAATGTATGTAATATCCTGCAAAGGCGAATAGCACTGTTTCTAGCATTGTTTTTCTCCTGATTATTTTTCTTCTCTTGTTTTGATTTAACTGATTCAGATCATGTAACATCTGCAGATGCGTGCTGCTGTTAAAAATGTGGCAGAGTATTTCCCGACTGCAATAATTAGCGGAAGAAGTCGTGAAAAGGTAGCTGAAGAAATCTATGAAACAAAACTGTTATCTTCCTGTACTTCATTTTTCTCTTTTATGTTTACTAACACCTGCATATAGAGAAATGTAAATGACAAACTTTCATGTTTGTACTAGCTCAGTGGTAAGAGCTCGACCTTGTAACCTCAAGGGACATAGTTCAAATCCCCTCTGGTACAGTTGAAAAAAGACCATCAGTGTCACTTTACTTGTAAAAAAATGTTGATGTTAGGTTTTGATTCCAACCATTGTTGCACCTTATTTCTTCAGGTACATGAATTTGTTGGATTAACAGATCTCCATTATGCTGGTAGTCATGGAATGGACATAATTGGTCCTCTTAGACAGTCTGTATCTGATAATCACCCTAATTGCATTAGGTCTACTGATAAGAAGGTACCACTTTTCAGTTCATGATTTCTATCTAGCATATGTTTATGTTCTTTGTCTCTCTAGTTCTAGAAGTATCTTTCTAAAGGGTCCCTATATTGATTTATAATCTTCTAAAATTACAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCTATGATTGATGAGGTATGCATAATGTATATATGAAAAATACTTCGCTTAAATCACCTATCAATTTTTATTCTAGATTGAAATATGTTATTATCCAACACTGACATATGTATTACATTCAAATATTTCATTTTCTCAAATTCTTATTGGTGTCAGCATGTCGGTCTTAGTGTTAGTGTCGTGCCCGGTATCTGTGTTAGTGCTCATAGATCATGACTGGCTCATGTTTATGCAGGTCCGTAAGTTGCTCACTGAGTGTACAAAAGACATCAAAGGAGCAAAAATTGAGAACAATAAGTTTTGTGTGTCTGTACATTATCGCAATGTAGACGAGGAGGTACTGTCTACTACTCCCTTCTTTCCTTTTTGATTCTCGCTCTTGTATAAAAAGAATTGTTCCTATTTTTTTGTTGTTGTTTTCAATGTTCAATGCAACTTTAACTATTGTTTTGTCAATAATAACGTTAAGTCTTTTGTGATGCTTAGTAGTTAGAAGTATTGATGAATGAATCAGTAGTTTTTCTGCCTAAAATGATTCCATTTTTAACCAACTTATCGCGTATTTCATCATGGTTACTGCATTATTTCCTCTTATTTAGTTTCATTTTCATATAATTTACAGAGTTGGGATTTGGTGGCACAACGCGTTTTTGATATTATGAAGGACTATCCACATTTACGATTAACTCATGGTCGGAAGGTACTATTCCAGTTCTAGATCTAAACTTTTCTACTCATTTTACAAGAGACATGACTTGTTACAAAACTTTAGTGGTTTATGTTCCTTTTTAAGAGACATCTGTTATTCAACTTAGTAATATATGTTTACTGATAATGTTCAGGTTTTAGAGGTTCGACCAGTGATTGACTGGGATAAGGGAAAAGCTGTTACATTTTTGCTTGAATCACTTGGTGAGTTAATTTGTTGATTATATAATGGCTATTTTGCGTGTATTCAAGGATCAGAAATTTGTATTGCAGTAACTGACACGTGACATGTTTTCATTTAGGACTTAGCGACGACGATGATGTGCTAGCTATATATATTGGTGACGATCGGACCGATGAAGATGCATTTAAGGTTAATATGTTGCTGGTTATCATGAGCTATACTTAAATTGAATGTTCTTCAATTTTTCTTTTCCTTACTTTATATAACTGATATAAAATGGACCGTAACAGGTTTTGAGTGAGGTTAATAAAGGTTTTGGAATCTTAGTCTCTTCCGCTCCTAAAGAAAGCAACGCGGTTTACTCTCTTTCTGATCCTTCAGAGGTAATTCTTATGGTTGTAATTTAGTTTATATGGTTCTTTTGACAGTTTTGTTGCAATTTTGTACATTTGCTTTGGCAATAGACATGCTGTTTGCTAGTGCATTGGAATAATGTTTGTATCATTAGGGCCTTGTTTGGATAAACAACTTATTTAAAGTCAAACTTGTGGTGTATGCAGGTCATGGAATTTCTCAAGTCACTTGTGGTATGGAAATCAAGCTCTATAGTATAATGTATAGAGGAGAATATACTCAACTATACTATATATTAAAGATAGATTCTGATTTTGGGTTTGGTTGAGAAAATTTCAATTTTCAAGGGTTTCTTGGAGCAGATTTAAGCTCTGAAGAAGACCTCAAGATAGGAATAACATTTTCATTACTTAGTTTTTTTTTGCTCAAAGCTCTTGTGGAAGCTGTAAATTAATGGCTCATATAATTATTATATATGTCAGAAAGATTATCAAAATCTACCAAGGGGGTTATTTTGTCCCTAG

Protein sequence

>MS.gene058404.t1

MDLKTNHAPRIADTATLTRTRSRLGAGAPSSLSCSPTNTSTFLHGPSLTIPRKKIGILDDVRSNGWLDAMRSSSPTHKKISMDIGHGVASSEADAAYLTWLLEFPSAIGAFEQITNLAKGKKIALFLDYDGTLSPIVDNPERAFMSDNMRAAVKNVAEYFPTAIISGRSREKVHEFVGLTDLHYAGSHGMDIIGPLRQSVSDNHPNCIRSTDKKGKEVNLFQPAAEFLPMIDEVRKLLTECTKDIKGAKIENNKFCVSVHYRNVDEESWDLVAQRVFDIMKDYPHLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLSDDDDVLAIYIGDDRTDEDAFKVLSEVNKGFGILVSSAPKESNAVYSLSDPSEKDYQNLPRGLFCP