Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35247.t1 | XP_013443967.1 | 96.8 | 221 | 7 | 0 | 1 | 221 | 60 | 280 | 6.40E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35247.t1 | Q2JRH1 | 43.1 | 216 | 108 | 5 | 6 | 219 | 34 | 236 | 9.9e-38 | 158.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35247.t1 | A0A072TKF1 | 96.8 | 221 | 7 | 0 | 1 | 221 | 60 | 280 | 4.6e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050099 | MS.gene35247 | 0.817139 | 3.85E-52 | -1.69E-46 |
| MS.gene057121 | MS.gene35247 | 0.813203 | 2.88E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene35247 | 0.820977 | 5.16E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene35247 | 0.817939 | 2.54E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35247.t1 | MTR_8g009700 | 96.833 | 221 | 7 | 0 | 1 | 221 | 60 | 280 | 2.65e-163 | 452 |
| MS.gene35247.t1 | MTR_8g009680 | 92.308 | 221 | 15 | 1 | 1 | 219 | 95 | 315 | 1.47e-152 | 426 |
| MS.gene35247.t1 | MTR_6g018680 | 40.816 | 196 | 107 | 3 | 24 | 218 | 479 | 666 | 3.68e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35247.t1 | AT5G17660 | 64.126 | 223 | 72 | 3 | 2 | 221 | 91 | 308 | 3.15e-106 | 308 |
Find 54 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAACTGCTTAAAAGAAAT+TGG | 0.087540 | 8.3:+79193712 | None:intergenic |
| CCCAAATGATTTCTCGCTTT+AGG | 0.331633 | 8.3:+79194082 | None:intergenic |
| ACCTAAAGCGAGAAATCATT+TGG | 0.332484 | 8.3:-79194083 | MS.gene35247:CDS |
| TCAACTGCTTAAAAGAAATT+GGG | 0.339051 | 8.3:+79193713 | None:intergenic |
| GTGCATCAACTTCATCTAAC+TGG | 0.350365 | 8.3:+79192806 | None:intergenic |
| ATCATTTGGGATTGGAAATA+CGG | 0.352445 | 8.3:-79194069 | MS.gene35247:CDS |
| TAAGCAACCCTATGGGGATT+AGG | 0.353856 | 8.3:-79192726 | MS.gene35247:CDS |
| TATGTCATATTTCAGAATTT+GGG | 0.367238 | 8.3:-79196132 | None:intergenic |
| CTTGCAGTTAGTTTCGATTT+CGG | 0.379115 | 8.3:-79193671 | MS.gene35247:intron |
| TGGTCAAGCGTGCTGAGTTA+TGG | 0.382252 | 8.3:-79193884 | MS.gene35247:CDS |
| TTGCCACTCATGGTAGATAT+TGG | 0.411854 | 8.3:-79194666 | MS.gene35247:CDS |
| ATTTGGGTCATGGCAGAATC+AGG | 0.419446 | 8.3:-79196116 | MS.gene35247:CDS |
| GGTCAAGCGTGCTGAGTTAT+GGG | 0.420860 | 8.3:-79193883 | MS.gene35247:CDS |
| GGGATTGGAAATACGGCAAA+AGG | 0.432298 | 8.3:-79194062 | MS.gene35247:intron |
| AGCGAGAAATCATTTGGGAT+TGG | 0.464188 | 8.3:-79194077 | MS.gene35247:CDS |
| TTCCAGTCTGGTACTTGTGC+AGG | 0.467660 | 8.3:+79194711 | None:intergenic |
| CCTAAAGCGAGAAATCATTT+GGG | 0.468102 | 8.3:-79194082 | MS.gene35247:CDS |
| TCTACCATGAGTGGCAATGC+AGG | 0.471708 | 8.3:+79194672 | None:intergenic |
| TAATTTATCTCCCGGAGGAC+AGG | 0.477829 | 8.3:-79193226 | MS.gene35247:intron |
| GCAGCGGCAGGTTTCTTATG+TGG | 0.479775 | 8.3:-79194120 | MS.gene35247:CDS |
| GCAAAGACCTGGTTCCAGTC+TGG | 0.484688 | 8.3:+79194699 | None:intergenic |
| ATGGTTGTTAAGCAACCCTA+TGG | 0.489763 | 8.3:-79192734 | MS.gene35247:CDS |
| CTCTCAGTCCTAATCCCCAT+AGG | 0.490442 | 8.3:+79192718 | None:intergenic |
| TGAGTTATGGGTAAAAGATC+TGG | 0.497316 | 8.3:-79193871 | MS.gene35247:CDS |
| ATTGTAGATAATTTATCTCC+CGG | 0.499583 | 8.3:-79193234 | MS.gene35247:CDS |
| CAGAAAATATACCTGTCCTC+CGG | 0.501225 | 8.3:+79193215 | None:intergenic |
| AAATAATGTCAGGCAGCGGC+AGG | 0.509305 | 8.3:-79194132 | MS.gene35247:intron |
| GAACATACAGAGAAAGAAGA+AGG | 0.534792 | 8.3:+79196081 | None:intergenic |
| TCTCAGTCCTAATCCCCATA+GGG | 0.549156 | 8.3:+79192719 | None:intergenic |
| AGAAAATATACCTGTCCTCC+GGG | 0.550378 | 8.3:+79193216 | None:intergenic |
| ATGGGTAAAAGATCTGGCTC+TGG | 0.555239 | 8.3:-79193865 | MS.gene35247:CDS |
| TGGTTGTTAAGCAACCCTAT+GGG | 0.568560 | 8.3:-79192733 | MS.gene35247:CDS |
| CTCCTGCACAAGTACCAGAC+TGG | 0.570890 | 8.3:-79194713 | MS.gene35247:CDS |
| AGACCCTGCATTGCCACTCA+TGG | 0.575995 | 8.3:-79194676 | MS.gene35247:CDS |
| CTCATGGTAGATATTGGATG+TGG | 0.587804 | 8.3:-79194660 | MS.gene35247:intron |
| GAAACTAACTGCAAGGGACC+AGG | 0.589756 | 8.3:+79193679 | None:intergenic |
| CGAAATCGAAACTAACTGCA+AGG | 0.590115 | 8.3:+79193672 | None:intergenic |
| GAGATTCATGCTGAATTCGA+AGG | 0.592570 | 8.3:-79192694 | MS.gene35247:CDS |
| ATGCAGGGTCTGCAAAGACC+TGG | 0.597840 | 8.3:+79194688 | None:intergenic |
| CAACTGCTTAAAAGAAATTG+GGG | 0.598384 | 8.3:+79193714 | None:intergenic |
| ATATTTCAGAATTTGGGTCA+TGG | 0.598590 | 8.3:-79196126 | None:intergenic |
| CAGTTGATAGAATCATATCC+TGG | 0.600339 | 8.3:-79193697 | MS.gene35247:CDS |
| AAGGTTGTATGAGAAGAAGC+AGG | 0.607540 | 8.3:-79192656 | MS.gene35247:CDS |
| ACAAGTACCAGACTGGAACC+AGG | 0.613511 | 8.3:-79194706 | MS.gene35247:CDS |
| CTACCATGAGTGGCAATGCA+GGG | 0.613691 | 8.3:+79194673 | None:intergenic |
| AAGGAGTGAAAATCTATCGA+AGG | 0.623652 | 8.3:-79192675 | MS.gene35247:CDS |
| TATTGTGTGACAGTGAAGGA+TGG | 0.628877 | 8.3:-79192753 | MS.gene35247:CDS |
| ACAATCTGATGCACTTGAAG+TGG | 0.636353 | 8.3:-79192845 | MS.gene35247:CDS |
| GATATATTGTGTGACAGTGA+AGG | 0.638001 | 8.3:-79192757 | MS.gene35247:CDS |
| GGTTGTTAAGCAACCCTATG+GGG | 0.644610 | 8.3:-79192732 | MS.gene35247:CDS |
| GAAATCGAAACTAACTGCAA+GGG | 0.651078 | 8.3:+79193673 | None:intergenic |
| CATCCAATATCTACCATGAG+TGG | 0.659846 | 8.3:+79194663 | None:intergenic |
| TCTACAATAGTACCGACCAA+AGG | 0.679747 | 8.3:+79193249 | None:intergenic |
| GTAGATAATTTATCTCCCGG+AGG | 0.720822 | 8.3:-79193231 | MS.gene35247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATGATAATTATAGTAT+AGG | + | chr8.3:79192797-79192816 | None:intergenic | 10.0% |
| !! | ATGTTTATATAATATAATGA+AGG | + | chr8.3:79193761-79193780 | None:intergenic | 10.0% |
| !! | TAAATGATAATTATAGTATA+GGG | + | chr8.3:79192796-79192815 | None:intergenic | 10.0% |
| !! | TTGTATAAAATATATACATT+TGG | - | chr8.3:79193782-79193801 | MS.gene35247:intron | 10.0% |
| !! | AATTATTTAGATTTAAAGAG+GGG | - | chr8.3:79193263-79193282 | MS.gene35247:CDS | 15.0% |
| !! | ACTAAAACAACAAATTTATA+TGG | - | chr8.3:79193716-79193735 | MS.gene35247:CDS | 15.0% |
| !! | CAATATATCATTCATAAAAT+TGG | + | chr8.3:79193914-79193933 | None:intergenic | 15.0% |
| !! | CAATTATTTAGATTTAAAGA+GGG | - | chr8.3:79193262-79193281 | MS.gene35247:CDS | 15.0% |
| !! | TTAACTCATAATCATATTTA+TGG | - | chr8.3:79195806-79195825 | MS.gene35247:intron | 15.0% |
| !!! | AATCATAAACTTTATTTTGA+CGG | - | chr8.3:79194941-79194960 | MS.gene35247:intron | 15.0% |
| !!! | ATTTTATCCTTATTCATTAT+AGG | - | chr8.3:79192745-79192764 | MS.gene35247:CDS | 15.0% |
| !!! | GATATTTTTTCTTTAAATGT+GGG | + | chr8.3:79195476-79195495 | None:intergenic | 15.0% |
| !!! | GATTTTATCATATTATTTGT+AGG | + | chr8.3:79193023-79193042 | None:intergenic | 15.0% |
| !!! | TGATATTTTTTCTTTAAATG+TGG | + | chr8.3:79195477-79195496 | None:intergenic | 15.0% |
| !! | AAGGTGAATTTATAATATAC+AGG | + | chr8.3:79193421-79193440 | None:intergenic | 20.0% |
| !! | AGTAAATTGCACAATATTTA+TGG | + | chr8.3:79195607-79195626 | None:intergenic | 20.0% |
| !! | ATATGAGAAAACATTTGAAT+TGG | + | chr8.3:79192727-79192746 | None:intergenic | 20.0% |
| !! | ATCTAATCCTATAATGAATA+AGG | + | chr8.3:79192755-79192774 | None:intergenic | 20.0% |
| !! | ATTATTTAGATTTAAAGAGG+GGG | - | chr8.3:79193264-79193283 | MS.gene35247:CDS | 20.0% |
| !! | CCAATTATTTAGATTTAAAG+AGG | - | chr8.3:79193261-79193280 | MS.gene35247:CDS | 20.0% |
| !! | CCTCTTTAAATCTAAATAAT+TGG | + | chr8.3:79193264-79193283 | None:intergenic | 20.0% |
| !! | GAAGAAAAAAATATCATTAC+AGG | + | chr8.3:79194030-79194049 | None:intergenic | 20.0% |
| !! | TACACTAATAGTAAGAAAAA+TGG | + | chr8.3:79195717-79195736 | None:intergenic | 20.0% |
| !! | TTACTATTAGTGTAAATGTA+TGG | - | chr8.3:79195723-79195742 | MS.gene35247:intron | 20.0% |
| !! | TTAGCATACATATTAATGAT+TGG | - | chr8.3:79194196-79194215 | MS.gene35247:intron | 20.0% |
| !! | TTCATTAGCAAATCAAAATA+GGG | + | chr8.3:79192851-79192870 | None:intergenic | 20.0% |
| !! | TTTCATTAGCAAATCAAAAT+AGG | + | chr8.3:79192852-79192871 | None:intergenic | 20.0% |
| !!! | AATGAACATCTTTTAAAAAG+GGG | + | chr8.3:79192880-79192899 | None:intergenic | 20.0% |
| !!! | GAATGAACATCTTTTAAAAA+GGG | + | chr8.3:79192881-79192900 | None:intergenic | 20.0% |
| ! | AAAAAACAGGATTTCAAAAG+GGG | - | chr8.3:79193529-79193548 | MS.gene35247:intron | 25.0% |
| ! | ACATGATCTATTATTGAGTT+TGG | - | chr8.3:79194258-79194277 | MS.gene35247:intron | 25.0% |
| ! | AGAAATCAAAATTCACTGAA+AGG | + | chr8.3:79194784-79194803 | None:intergenic | 25.0% |
| ! | ATACAAAATCTTATGTACCA+GGG | + | chr8.3:79195691-79195710 | None:intergenic | 25.0% |
| ! | ATCAACTGCTTAAAAGAAAT+TGG | + | chr8.3:79195059-79195078 | None:intergenic | 25.0% |
| ! | ATTGTAGATAATTTATCTCC+CGG | - | chr8.3:79195534-79195553 | MS.gene35247:intron | 25.0% |
| ! | CAAAAAACAGGATTTCAAAA+GGG | - | chr8.3:79193528-79193547 | MS.gene35247:intron | 25.0% |
| ! | GAAATCAAAATTCACTGAAA+GGG | + | chr8.3:79194783-79194802 | None:intergenic | 25.0% |
| ! | GTGAATTTATAATATACAGG+TGG | + | chr8.3:79193418-79193437 | None:intergenic | 25.0% |
| ! | TACAAGATATGCTGATATTT+AGG | - | chr8.3:79195650-79195669 | MS.gene35247:intron | 25.0% |
| ! | TACATATTAATGATTGGCAT+TGG | - | chr8.3:79194202-79194221 | MS.gene35247:intron | 25.0% |
| ! | TCAACTGCTTAAAAGAAATT+GGG | + | chr8.3:79195058-79195077 | None:intergenic | 25.0% |
| !! | ACTTTGATTACAAGATGTTT+TGG | + | chr8.3:79194309-79194328 | None:intergenic | 25.0% |
| !! | ATTTTCAACAACAGATATAG+TGG | + | chr8.3:79194620-79194639 | None:intergenic | 25.0% |
| !! | TGATTGAAGTTGATCTATTA+AGG | - | chr8.3:79193119-79193138 | MS.gene35247:intron | 25.0% |
| !! | TGTTTTGTACAGATTGAAAA+GGG | + | chr8.3:79193628-79193647 | None:intergenic | 25.0% |
| !!! | CGAATGAACATCTTTTAAAA+AGG | + | chr8.3:79192882-79192901 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTGTCTTAATTGT+AGG | - | chr8.3:79192822-79192841 | MS.gene35247:CDS | 25.0% |
| !!! | TTGTTTTGTACAGATTGAAA+AGG | + | chr8.3:79193629-79193648 | None:intergenic | 25.0% |
| AAAAACAGGATTTCAAAAGG+GGG | - | chr8.3:79193530-79193549 | MS.gene35247:intron | 30.0% | |
| AATTAAGTGCGATGTTTATC+AGG | + | chr8.3:79194594-79194613 | None:intergenic | 30.0% | |
| ACAAGAAATGTCTGCAATTA+AGG | + | chr8.3:79195025-79195044 | None:intergenic | 30.0% | |
| AGATGTTCATTCGTTGAAAT+TGG | - | chr8.3:79192889-79192908 | MS.gene35247:intron | 30.0% | |
| AGGCATGAAATATCGTTAAA+AGG | + | chr8.3:79195843-79195862 | None:intergenic | 30.0% | |
| CAACTGCTTAAAAGAAATTG+GGG | + | chr8.3:79195057-79195076 | None:intergenic | 30.0% | |
| CAAGAAATGTCTGCAATTAA+GGG | + | chr8.3:79195024-79195043 | None:intergenic | 30.0% | |
| CATACAAAATCTTATGTACC+AGG | + | chr8.3:79195692-79195711 | None:intergenic | 30.0% | |
| CCAAAAAACAGGATTTCAAA+AGG | - | chr8.3:79193527-79193546 | MS.gene35247:intron | 30.0% | |
| CGTACATAATGAAAGACAAA+AGG | + | chr8.3:79193991-79194010 | None:intergenic | 30.0% | |
| CTGTTGTTGAAAATAATGTC+AGG | - | chr8.3:79194626-79194645 | MS.gene35247:intron | 30.0% | |
| GACTTAATAGTAAGAACACT+GGG | - | chr8.3:79193693-79193712 | MS.gene35247:CDS | 30.0% | |
| GGCATGAAATATCGTTAAAA+GGG | + | chr8.3:79195842-79195861 | None:intergenic | 30.0% | |
| TCATAAACACGACCATAAAA+TGG | + | chr8.3:79195892-79195911 | None:intergenic | 30.0% | |
| TCTGATTAGATATCTCTGTA+AGG | + | chr8.3:79193871-79193890 | None:intergenic | 30.0% | |
| TCTGCAATTAAGGGAAAAAA+GGG | + | chr8.3:79195015-79195034 | None:intergenic | 30.0% | |
| TGAATTGGTGTAGTAAAGAA+AGG | + | chr8.3:79192712-79192731 | None:intergenic | 30.0% | |
| TTAGAACCTCTTAAAGAATG+CGG | - | chr8.3:79193661-79193680 | MS.gene35247:intron | 30.0% | |
| TTCTGCATGCTCTAATATAT+AGG | - | chr8.3:79195571-79195590 | MS.gene35247:intron | 30.0% | |
| TTGTCTTTCATTATGTACGA+GGG | - | chr8.3:79193992-79194011 | MS.gene35247:intron | 30.0% | |
| TTTGTCTTTCATTATGTACG+AGG | - | chr8.3:79193991-79194010 | MS.gene35247:intron | 30.0% | |
| ! | ATATGGAGACATCTGTATTT+TGG | + | chr8.3:79193053-79193072 | None:intergenic | 30.0% |
| ! | ATCATTTGGGATTGGAAATA+CGG | - | chr8.3:79194699-79194718 | MS.gene35247:CDS | 30.0% |
| ! | GCTACATTGTTGTTACTTAA+AGG | - | chr8.3:79195387-79195406 | MS.gene35247:intron | 30.0% |
| ! | TAGTAGACAATATTAGCTCT+TGG | - | chr8.3:79194545-79194564 | MS.gene35247:intron | 30.0% |
| ! | TTTGGCTCAATATATCAGAA+AGG | + | chr8.3:79194291-79194310 | None:intergenic | 30.0% |
| ! | TTTTTCTTTAAATGTGGGTC+TGG | + | chr8.3:79195471-79195490 | None:intergenic | 30.0% |
| !! | AAAAGCACCAAAGAGAATTT+GGG | - | chr8.3:79195131-79195150 | MS.gene35247:intron | 30.0% |
| !! | TAAAAGCACCAAAGAGAATT+TGG | - | chr8.3:79195130-79195149 | MS.gene35247:intron | 30.0% |
| !!! | ACTTGACACATCACATTTTT+TGG | - | chr8.3:79193483-79193502 | MS.gene35247:intron | 30.0% |
| !!! | CCTTTTGAAATCCTGTTTTT+TGG | + | chr8.3:79193530-79193549 | None:intergenic | 30.0% |
| !!! | GTCAAGTTTTTTATTGACGT+GGG | + | chr8.3:79193470-79193489 | None:intergenic | 30.0% |
| !!! | TGTCAAGTTTTTTATTGACG+TGG | + | chr8.3:79193471-79193490 | None:intergenic | 30.0% |
| !!! | TTAAAGAATGCGGTTTTGAA+AGG | - | chr8.3:79193671-79193690 | MS.gene35247:intron | 30.0% |
| AAGGAGTGAAAATCTATCGA+AGG | - | chr8.3:79196093-79196112 | MS.gene35247:CDS | 35.0% | |
| AATGTAGCCAACAAGTGATT+TGG | + | chr8.3:79195375-79195394 | None:intergenic | 35.0% | |
| ACCTAAAGCGAGAAATCATT+TGG | - | chr8.3:79194685-79194704 | MS.gene35247:CDS | 35.0% | |
| ACGGCAAAGTAAATGTATAC+AGG | - | chr8.3:79194960-79194979 | MS.gene35247:intron | 35.0% | |
| AGAAATGAAACTGAGAGAGA+AGG | - | chr8.3:79193346-79193365 | MS.gene35247:intron | 35.0% | |
| ATCAAATGAAAACCGCACAT+AGG | - | chr8.3:79193156-79193175 | MS.gene35247:intron | 35.0% | |
| ATCTATTAAGGAACCAAGAC+GGG | - | chr8.3:79193131-79193150 | MS.gene35247:intron | 35.0% | |
| CAAAATTCACTGAAAGGGAA+GGG | + | chr8.3:79194778-79194797 | None:intergenic | 35.0% | |
| CACTTTCAGCTTAGAATAGA+GGG | - | chr8.3:79194817-79194836 | MS.gene35247:intron | 35.0% | |
| CCTAAAGCGAGAAATCATTT+GGG | - | chr8.3:79194686-79194705 | MS.gene35247:CDS | 35.0% | |
| CGGCAAAGTAAATGTATACA+GGG | - | chr8.3:79194961-79194980 | MS.gene35247:intron | 35.0% | |
| GAAATCGAAACTAACTGCAA+GGG | + | chr8.3:79195098-79195117 | None:intergenic | 35.0% | |
| GAACATACAGAGAAAGAAGA+AGG | + | chr8.3:79192690-79192709 | None:intergenic | 35.0% | |
| GATATATTGTGTGACAGTGA+AGG | - | chr8.3:79196011-79196030 | MS.gene35247:intron | 35.0% | |
| GATCTATTAAGGAACCAAGA+CGG | - | chr8.3:79193130-79193149 | MS.gene35247:intron | 35.0% | |
| GATGAACCAAATACAGAAAC+CGG | - | chr8.3:79193938-79193957 | MS.gene35247:intron | 35.0% | |
| GGACTTAATAGTAAGAACAC+TGG | - | chr8.3:79193692-79193711 | MS.gene35247:CDS | 35.0% | |
| GTCTGCAATTAAGGGAAAAA+AGG | + | chr8.3:79195016-79195035 | None:intergenic | 35.0% | |
| GTGATTTCATCGTATTAGTG+TGG | + | chr8.3:79193199-79193218 | None:intergenic | 35.0% | |
| TCAAAACCGCATTCTTTAAG+AGG | + | chr8.3:79193670-79193689 | None:intergenic | 35.0% | |
| TCAAAATTCACTGAAAGGGA+AGG | + | chr8.3:79194779-79194798 | None:intergenic | 35.0% | |
| TCAGCATATCTTGTACTAAG+TGG | + | chr8.3:79195645-79195664 | None:intergenic | 35.0% | |
| TGAGTTATGGGTAAAAGATC+TGG | - | chr8.3:79194897-79194916 | MS.gene35247:intron | 35.0% | |
| TGTCTTTCATTATGTACGAG+GGG | - | chr8.3:79193993-79194012 | MS.gene35247:intron | 35.0% | |
| TTGAAAATAATGTCAGGCAG+CGG | - | chr8.3:79194632-79194651 | MS.gene35247:intron | 35.0% | |
| TTTATGGTCGTGTTTATGAC+AGG | - | chr8.3:79195893-79195912 | MS.gene35247:intron | 35.0% | |
| ! | AACTCTTTTACCTCAACATC+AGG | - | chr8.3:79194345-79194364 | MS.gene35247:intron | 35.0% |
| ! | AAGAGTTTTGCAAAAGCCTT+TGG | - | chr8.3:79195503-79195522 | MS.gene35247:intron | 35.0% |
| ! | CTTGCAGTTAGTTTCGATTT+CGG | - | chr8.3:79195097-79195116 | MS.gene35247:intron | 35.0% |
| ! | GTACAGATTGAAAAGGGTAT+AGG | + | chr8.3:79193622-79193641 | None:intergenic | 35.0% |
| !! | ATTAATGATTGGCATTGGCT+TGG | - | chr8.3:79194207-79194226 | MS.gene35247:intron | 35.0% |
| !! | CAGTTGATAGAATCATATCC+TGG | - | chr8.3:79195071-79195090 | MS.gene35247:intron | 35.0% |
| !! | GAGAGTCGTTTTCCATTTTA+TGG | - | chr8.3:79195877-79195896 | MS.gene35247:intron | 35.0% |
| !! | GTCGTGTTATGCTTTTAACT+TGG | + | chr8.3:79192994-79193013 | None:intergenic | 35.0% |
| !! | TATGATTTCTAGCCTATGTG+CGG | + | chr8.3:79193171-79193190 | None:intergenic | 35.0% |
| AAGATGCACAGAAGTGATTC+CGG | - | chr8.3:79193289-79193308 | MS.gene35247:CDS | 40.0% | |
| AAGGTTGTATGAGAAGAAGC+AGG | - | chr8.3:79196112-79196131 | MS.gene35247:CDS | 40.0% | |
| ACAATCTGATGCACTTGAAG+TGG | - | chr8.3:79195923-79195942 | MS.gene35247:intron | 40.0% | |
| ACTGTGTGGAATTATGAGTG+CGG | - | chr8.3:79195344-79195363 | MS.gene35247:intron | 40.0% | |
| ACTTCAATTCCATGTGCAGA+TGG | - | chr8.3:79194864-79194883 | MS.gene35247:intron | 40.0% | |
| AGAAAATATACCTGTCCTCC+GGG | + | chr8.3:79195555-79195574 | None:intergenic | 40.0% | |
| ATACAGAAACCGGACCTAAT+AGG | - | chr8.3:79193948-79193967 | MS.gene35247:intron | 40.0% | |
| ATGGTTGTTAAGCAACCCTA+TGG | - | chr8.3:79196034-79196053 | MS.gene35247:intron | 40.0% | |
| CAATAATCTGAGTGAGTGAG+TGG | + | chr8.3:79193384-79193403 | None:intergenic | 40.0% | |
| CACTCACTCACTCAGATTAT+TGG | - | chr8.3:79193382-79193401 | MS.gene35247:intron | 40.0% | |
| CAGAAAATATACCTGTCCTC+CGG | + | chr8.3:79195556-79195575 | None:intergenic | 40.0% | |
| CATCCAATATCTACCATGAG+TGG | + | chr8.3:79194108-79194127 | None:intergenic | 40.0% | |
| CATTCACGTATTCAGCACAT+CGG | - | chr8.3:79195213-79195232 | MS.gene35247:intron | 40.0% | |
| CCCAAATGATTTCTCGCTTT+AGG | + | chr8.3:79194689-79194708 | None:intergenic | 40.0% | |
| CGAAATCGAAACTAACTGCA+AGG | + | chr8.3:79195099-79195118 | None:intergenic | 40.0% | |
| CTCAACCAATAGCAATGACT+AGG | + | chr8.3:79193091-79193110 | None:intergenic | 40.0% | |
| CTCATGGTAGATATTGGATG+TGG | - | chr8.3:79194108-79194127 | MS.gene35247:CDS | 40.0% | |
| CTCTGTAAGGTGACAAAAGA+TGG | + | chr8.3:79193858-79193877 | None:intergenic | 40.0% | |
| GAGATTCATGCTGAATTCGA+AGG | - | chr8.3:79196074-79196093 | MS.gene35247:intron | 40.0% | |
| GCACTTTCAGCTTAGAATAG+AGG | - | chr8.3:79194816-79194835 | MS.gene35247:intron | 40.0% | |
| GGGAAATCCAAATCACTTGT+TGG | - | chr8.3:79195365-79195384 | MS.gene35247:intron | 40.0% | |
| GGTAACCATTGGATTGAGAT+CGG | - | chr8.3:79195234-79195253 | MS.gene35247:intron | 40.0% | |
| GTAGATAATTTATCTCCCGG+AGG | - | chr8.3:79195537-79195556 | MS.gene35247:intron | 40.0% | |
| GTGCATCAACTTCATCTAAC+TGG | + | chr8.3:79195965-79195984 | None:intergenic | 40.0% | |
| TAGAAAAAACGACCCCTTTC+CGG | - | chr8.3:79193313-79193332 | MS.gene35247:intron | 40.0% | |
| TATTGTGTGACAGTGAAGGA+TGG | - | chr8.3:79196015-79196034 | MS.gene35247:intron | 40.0% | |
| TCTATTAAGGAACCAAGACG+GGG | - | chr8.3:79193132-79193151 | MS.gene35247:intron | 40.0% | |
| TGAAAGACAAAAGGATTCGC+TGG | + | chr8.3:79193982-79194001 | None:intergenic | 40.0% | |
| TGGAAATACGGCAAAAGGTA+AGG | - | chr8.3:79194711-79194730 | MS.gene35247:CDS | 40.0% | |
| TGGTTGTTAAGCAACCCTAT+GGG | - | chr8.3:79196035-79196054 | MS.gene35247:intron | 40.0% | |
| TTAACCACATCCTGATGTTG+AGG | + | chr8.3:79194358-79194377 | None:intergenic | 40.0% | |
| TTAGGTCCGGTTTCTGTATT+TGG | + | chr8.3:79193947-79193966 | None:intergenic | 40.0% | |
| TTCATTTCTTCGTCATCCAC+CGG | + | chr8.3:79193335-79193354 | None:intergenic | 40.0% | |
| TTGCCACTCATGGTAGATAT+TGG | - | chr8.3:79194102-79194121 | MS.gene35247:CDS | 40.0% | |
| TTTACCTCAACATCAGGATG+TGG | - | chr8.3:79194351-79194370 | MS.gene35247:intron | 40.0% | |
| TTTCATTTGATTCCCCGTCT+TGG | + | chr8.3:79193147-79193166 | None:intergenic | 40.0% | |
| ! | AGCGAGAAATCATTTGGGAT+TGG | - | chr8.3:79194691-79194710 | MS.gene35247:CDS | 40.0% |
| ! | GTTTTGCAAAAGCCTTTGGT+CGG | - | chr8.3:79195507-79195526 | MS.gene35247:intron | 40.0% |
| !! | TCTACAATAGTACCGACCAA+AGG | + | chr8.3:79195522-79195541 | None:intergenic | 40.0% |
| !!! | AAGGGGTCGTTTTTTCTATC+CGG | + | chr8.3:79193311-79193330 | None:intergenic | 40.0% |
| AACCGGACCTAATAGGCATT+TGG | - | chr8.3:79193955-79193974 | MS.gene35247:intron | 45.0% | |
| ACTCTCTTAAGTCTTCTCGC+AGG | + | chr8.3:79195863-79195882 | None:intergenic | 45.0% | |
| AGGGAAGGGAGTTATCATCA+AGG | + | chr8.3:79194764-79194783 | None:intergenic | 45.0% | |
| AGTCCAGCCAATAAGCCATT+AGG | + | chr8.3:79195166-79195185 | None:intergenic | 45.0% | |
| AGTGGCACCCAAATTCTCTT+TGG | + | chr8.3:79195141-79195160 | None:intergenic | 45.0% | |
| ATAGCTGCTCTTTGGCAACA+CGG | + | chr8.3:79194388-79194407 | None:intergenic | 45.0% | |
| ATCGTCCGATCTCAATCCAA+TGG | + | chr8.3:79195242-79195261 | None:intergenic | 45.0% | |
| ATGCGTGGAATTGTGACTTC+AGG | + | chr8.3:79195196-79195215 | None:intergenic | 45.0% | |
| ATTTGGGTCATGGCAGAATC+AGG | - | chr8.3:79192652-79192671 | MS.gene35247:CDS | 45.0% | |
| CCAATAAGCCATTAGGTCAG+TGG | + | chr8.3:79195159-79195178 | None:intergenic | 45.0% | |
| CCACTGACCTAATGGCTTAT+TGG | - | chr8.3:79195156-79195175 | MS.gene35247:intron | 45.0% | |
| CTGTGTGGAATTATGAGTGC+GGG | - | chr8.3:79195345-79195364 | MS.gene35247:intron | 45.0% | |
| GACCAAATGCCTATTAGGTC+CGG | + | chr8.3:79193960-79193979 | None:intergenic | 45.0% | |
| GACGACCTAGTCATTGCTAT+TGG | - | chr8.3:79193083-79193102 | MS.gene35247:intron | 45.0% | |
| GGGAAGGGAGTTATCATCAA+GGG | + | chr8.3:79194763-79194782 | None:intergenic | 45.0% | |
| GGGATTGGAAATACGGCAAA+AGG | - | chr8.3:79194706-79194725 | MS.gene35247:CDS | 45.0% | |
| GGTTGTTAAGCAACCCTATG+GGG | - | chr8.3:79196036-79196055 | MS.gene35247:intron | 45.0% | |
| GTCAACACATCAGTGGTTGT+TGG | + | chr8.3:79195326-79195345 | None:intergenic | 45.0% | |
| TAAGCAACCCTATGGGGATT+AGG | - | chr8.3:79196042-79196061 | MS.gene35247:intron | 45.0% | |
| TAATCTGAGTGAGTGAGTGG+AGG | + | chr8.3:79193381-79193400 | None:intergenic | 45.0% | |
| TAATTTATCTCCCGGAGGAC+AGG | - | chr8.3:79195542-79195561 | MS.gene35247:intron | 45.0% | |
| TCTCAGTCCTAATCCCCATA+GGG | + | chr8.3:79196052-79196071 | None:intergenic | 45.0% | |
| TGACCTAATGGCTTATTGGC+TGG | - | chr8.3:79195160-79195179 | MS.gene35247:intron | 45.0% | |
| TGAGCGATGGACCAAAAAAC+AGG | - | chr8.3:79193516-79193535 | MS.gene35247:intron | 45.0% | |
| TTCAGCACATCGGTAACCAT+TGG | - | chr8.3:79195223-79195242 | MS.gene35247:intron | 45.0% | |
| TTGTTCGCGTGGAATCATCA+AGG | + | chr8.3:79193440-79193459 | None:intergenic | 45.0% | |
| ! | AATGGCTTATTGGCTGGACT+TGG | - | chr8.3:79195166-79195185 | MS.gene35247:intron | 45.0% |
| ! | ATGGGTAAAAGATCTGGCTC+TGG | - | chr8.3:79194903-79194922 | MS.gene35247:intron | 45.0% |
| ! | GGACTCTATATTTCTGTCCC+TGG | - | chr8.3:79195671-79195690 | MS.gene35247:intron | 45.0% |
| AAAAAACGACCCCTTTCCGG+TGG | - | chr8.3:79193316-79193335 | MS.gene35247:intron | 50.0% | |
| AAATAATGTCAGGCAGCGGC+AGG | - | chr8.3:79194636-79194655 | MS.gene35247:intron | 50.0% | |
| ACAAGTACCAGACTGGAACC+AGG | - | chr8.3:79194062-79194081 | MS.gene35247:intron | 50.0% | |
| CCACACAGTCAACACATCAG+TGG | + | chr8.3:79195333-79195352 | None:intergenic | 50.0% | |
| CGCTGGACCAAATGCCTATT+AGG | + | chr8.3:79193965-79193984 | None:intergenic | 50.0% | |
| CTACCATGAGTGGCAATGCA+GGG | + | chr8.3:79194098-79194117 | None:intergenic | 50.0% | |
| CTCTCAGTCCTAATCCCCAT+AGG | + | chr8.3:79196053-79196072 | None:intergenic | 50.0% | |
| CTGGACACTGCATGTGTTGA+GGG | + | chr8.3:79195452-79195471 | None:intergenic | 50.0% | |
| GAAACTAACTGCAAGGGACC+AGG | + | chr8.3:79195092-79195111 | None:intergenic | 50.0% | |
| GCTACGCTATAGCTGCTCTT+TGG | + | chr8.3:79194396-79194415 | None:intergenic | 50.0% | |
| GGTCAAGCGTGCTGAGTTAT+GGG | - | chr8.3:79194885-79194904 | MS.gene35247:intron | 50.0% | |
| GGTCGTCAACGTTGCAGATA+TGG | + | chr8.3:79193070-79193089 | None:intergenic | 50.0% | |
| GTGCTGAATACGTGAATGCG+TGG | + | chr8.3:79195211-79195230 | None:intergenic | 50.0% | |
| TCTACCATGAGTGGCAATGC+AGG | + | chr8.3:79194099-79194118 | None:intergenic | 50.0% | |
| TCTGGACACTGCATGTGTTG+AGG | + | chr8.3:79195453-79195472 | None:intergenic | 50.0% | |
| TCTTCGTCATCCACCGGAAA+GGG | + | chr8.3:79193329-79193348 | None:intergenic | 50.0% | |
| TGGTCAAGCGTGCTGAGTTA+TGG | - | chr8.3:79194884-79194903 | MS.gene35247:intron | 50.0% | |
| TGGTCCAGAAATCTGAGCGA+TGG | - | chr8.3:79193503-79193522 | MS.gene35247:intron | 50.0% | |
| TGGTCCATCGCTCAGATTTC+TGG | + | chr8.3:79193510-79193529 | None:intergenic | 50.0% | |
| TTCCAGTCTGGTACTTGTGC+AGG | + | chr8.3:79194060-79194079 | None:intergenic | 50.0% | |
| TTCTTCGTCATCCACCGGAA+AGG | + | chr8.3:79193330-79193349 | None:intergenic | 50.0% | |
| ! | TGGGATCAAACTTGTTCGCG+TGG | + | chr8.3:79193451-79193470 | None:intergenic | 50.0% |
| !! | CCACTGATGTGTTGACTGTG+TGG | - | chr8.3:79195330-79195349 | MS.gene35247:intron | 50.0% |
| !! | TTTGGGTGCCACTGACCTAA+TGG | - | chr8.3:79195148-79195167 | MS.gene35247:intron | 50.0% |
| AGACCCTGCATTGCCACTCA+TGG | - | chr8.3:79194092-79194111 | MS.gene35247:CDS | 55.0% | |
| ATGCAGGGTCTGCAAAGACC+TGG | + | chr8.3:79194083-79194102 | None:intergenic | 55.0% | |
| CACGCTTGACCATCTGCACA+TGG | + | chr8.3:79194876-79194895 | None:intergenic | 55.0% | |
| CTCCTGCACAAGTACCAGAC+TGG | - | chr8.3:79194055-79194074 | MS.gene35247:intron | 55.0% | |
| CTTCGTCATCCACCGGAAAG+GGG | + | chr8.3:79193328-79193347 | None:intergenic | 55.0% | |
| GCAAAGACCTGGTTCCAGTC+TGG | + | chr8.3:79194072-79194091 | None:intergenic | 55.0% | |
| GCAGCGGCAGGTTTCTTATG+TGG | - | chr8.3:79194648-79194667 | MS.gene35247:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79192651 | 79196139 | 79192651 | ID=MS.gene35247 |
| chr8.3 | mRNA | 79192651 | 79196139 | 79192651 | ID=MS.gene35247.t1;Parent=MS.gene35247 |
| chr8.3 | exon | 79196089 | 79196139 | 79196089 | ID=MS.gene35247.t1.exon1;Parent=MS.gene35247.t1 |
| chr8.3 | CDS | 79196089 | 79196139 | 79196089 | ID=cds.MS.gene35247.t1;Parent=MS.gene35247.t1 |
| chr8.3 | exon | 79194661 | 79194736 | 79194661 | ID=MS.gene35247.t1.exon2;Parent=MS.gene35247.t1 |
| chr8.3 | CDS | 79194661 | 79194736 | 79194661 | ID=cds.MS.gene35247.t1;Parent=MS.gene35247.t1 |
| chr8.3 | exon | 79194063 | 79194142 | 79194063 | ID=MS.gene35247.t1.exon3;Parent=MS.gene35247.t1 |
| chr8.3 | CDS | 79194063 | 79194142 | 79194063 | ID=cds.MS.gene35247.t1;Parent=MS.gene35247.t1 |
| chr8.3 | exon | 79193858 | 79193907 | 79193858 | ID=MS.gene35247.t1.exon4;Parent=MS.gene35247.t1 |
| chr8.3 | CDS | 79193858 | 79193907 | 79193858 | ID=cds.MS.gene35247.t1;Parent=MS.gene35247.t1 |
| chr8.3 | exon | 79193672 | 79193756 | 79193672 | ID=MS.gene35247.t1.exon5;Parent=MS.gene35247.t1 |
| chr8.3 | CDS | 79193672 | 79193756 | 79193672 | ID=cds.MS.gene35247.t1;Parent=MS.gene35247.t1 |
| chr8.3 | exon | 79193227 | 79193325 | 79193227 | ID=MS.gene35247.t1.exon6;Parent=MS.gene35247.t1 |
| chr8.3 | CDS | 79193227 | 79193325 | 79193227 | ID=cds.MS.gene35247.t1;Parent=MS.gene35247.t1 |
| chr8.3 | exon | 79192651 | 79192875 | 79192651 | ID=MS.gene35247.t1.exon7;Parent=MS.gene35247.t1 |
| chr8.3 | CDS | 79192651 | 79192875 | 79192651 | ID=cds.MS.gene35247.t1;Parent=MS.gene35247.t1 |
| Gene Sequence |
| Protein sequence |
