Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35250.t1 | XP_013443975.1 | 97.9 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 4.10E-249 | 870.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35250.t1 | A0A072TKP9 | 97.9 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 3.0e-249 | 870.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030339 | MS.gene35250 | PPI |
| MS.gene35250 | MS.gene063341 | PPI |
| MS.gene35250 | MS.gene66390 | PPI |
| MS.gene35250 | MS.gene75022 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35250.t1 | MTR_8g009770 | 97.921 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 0.0 | 868 |
| MS.gene35250.t1 | MTR_3g110630 | 39.207 | 454 | 239 | 12 | 1 | 427 | 1 | 444 | 2.59e-91 | 284 |
| MS.gene35250.t1 | MTR_6g090060 | 38.235 | 442 | 232 | 11 | 1 | 429 | 1 | 414 | 1.49e-84 | 265 |
| MS.gene35250.t1 | MTR_5g005420 | 36.283 | 452 | 230 | 12 | 1 | 430 | 1 | 416 | 8.78e-79 | 250 |
| MS.gene35250.t1 | MTR_8g102270 | 39.763 | 337 | 162 | 10 | 95 | 427 | 53 | 352 | 8.11e-58 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35250.t1 | AT5G17640 | 73.349 | 424 | 103 | 6 | 1 | 420 | 1 | 418 | 0.0 | 597 |
| MS.gene35250.t1 | AT1G10020 | 39.262 | 461 | 238 | 13 | 1 | 427 | 1 | 453 | 2.15e-90 | 281 |
| MS.gene35250.t1 | AT4G29310 | 39.636 | 439 | 227 | 10 | 1 | 427 | 1 | 413 | 3.15e-89 | 277 |
| MS.gene35250.t1 | AT3G19680 | 34.747 | 495 | 246 | 13 | 1 | 430 | 1 | 483 | 8.52e-74 | 239 |
| MS.gene35250.t1 | AT1G50040 | 36.229 | 472 | 241 | 15 | 1 | 431 | 1 | 453 | 1.85e-67 | 222 |
| MS.gene35250.t1 | AT4G29310 | 38.507 | 335 | 183 | 8 | 1 | 323 | 1 | 324 | 1.24e-60 | 200 |
Find 122 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCCCTTCACCCCATTC+AGG | 0.254809 | 8.3:+79157760 | None:intergenic |
| TTCCATCTTCAGGTTGTGAT+TGG | 0.257792 | 8.3:-79156574 | MS.gene35250:CDS |
| ACTCCATTTGTTCCATCTTC+AGG | 0.295514 | 8.3:-79156584 | MS.gene35250:CDS |
| TGGATCCCCAGGCCTTTATT+AGG | 0.311476 | 8.3:-79158134 | MS.gene35250:CDS |
| TAGGTTGTCGATAGGCTCTC+TGG | 0.312333 | 8.3:-79158115 | MS.gene35250:CDS |
| ACCAAAGTCTCCGCTACTTT+GGG | 0.330454 | 8.3:+79156274 | None:intergenic |
| CTATAATCCTCATGCATGTT+TGG | 0.342455 | 8.3:-79157872 | MS.gene35250:CDS |
| ATTGTGGAGTTGGTGTTAAA+AGG | 0.354539 | 8.3:-79157816 | MS.gene35250:CDS |
| GAACCGAACACTGGAAAATC+TGG | 0.358986 | 8.3:-79158072 | MS.gene35250:CDS |
| CTAAACTTGCAACTGAAGAT+TGG | 0.389372 | 8.3:+79157559 | None:intergenic |
| TCAAACCGGAACACGTATCT+AGG | 0.390399 | 8.3:+79157637 | None:intergenic |
| TCCCCACGGCTGCCAGCTCT+CGG | 0.391454 | 8.3:+79156493 | None:intergenic |
| CTTCAGTTGCAAGTTTAGTA+AGG | 0.396399 | 8.3:-79157554 | MS.gene35250:CDS |
| GACATTTCTGACTTAGAATC+CGG | 0.396894 | 8.3:-79156683 | MS.gene35250:CDS |
| GCCTATCGACAACCTAATAA+AGG | 0.397474 | 8.3:+79158122 | None:intergenic |
| CACCAAAGTCTCCGCTACTT+TGG | 0.403157 | 8.3:+79156273 | None:intergenic |
| CTACTTTGGGGACTAGGTAT+TGG | 0.403650 | 8.3:+79156287 | None:intergenic |
| TTTAACGGATGGACATGTAT+TGG | 0.403761 | 8.3:-79157727 | MS.gene35250:CDS |
| TCTCCGCTACTTTGGGGACT+AGG | 0.411180 | 8.3:+79156281 | None:intergenic |
| CTGATCCTAGATACGTGTTC+CGG | 0.418994 | 8.3:-79157642 | MS.gene35250:CDS |
| CGCAATGCCAGCTGTACTAA+TGG | 0.422674 | 8.3:+79156182 | None:intergenic |
| AATTCATATAAATGCCGAAA+AGG | 0.425545 | 8.3:-79156369 | MS.gene35250:CDS |
| CTTCTGATCTTCCTTCGAAA+AGG | 0.428055 | 8.3:+79156080 | None:intergenic |
| TTTAACTTTCAAATGCAATT+CGG | 0.430158 | 8.3:+79157672 | None:intergenic |
| GTCATGAGCTGTAGAGTTCA+AGG | 0.432518 | 8.3:-79156224 | MS.gene35250:CDS |
| AAATGCAGGTTGGCCCTGAA+TGG | 0.434195 | 8.3:-79157774 | MS.gene35250:CDS |
| GGAGGATGCTGCCATCTTCA+TGG | 0.442367 | 8.3:-79156144 | MS.gene35250:CDS |
| GTGAAGATACATGATCTATC+TGG | 0.443249 | 8.3:-79156635 | MS.gene35250:CDS |
| CAACCTGAAGATGGAACAAA+TGG | 0.444232 | 8.3:+79156581 | None:intergenic |
| TTCAAATGCAATTCGGCACC+TGG | 0.448516 | 8.3:+79157679 | None:intergenic |
| TCCCTTCTTCCCTGAAAATA+CGG | 0.451160 | 8.3:+79157843 | None:intergenic |
| CATGAGAACTGTGGCTTCTA+CGG | 0.453039 | 8.3:-79156315 | MS.gene35250:CDS |
| CACTGAGTCCGGTTGTTGGA+GGG | 0.453922 | 8.3:-79156250 | MS.gene35250:CDS |
| ATGACAAACCCTCCAACAAC+CGG | 0.456528 | 8.3:+79156242 | None:intergenic |
| CGAACAATCAACCAAGCTCC+TGG | 0.461063 | 8.3:+79156536 | None:intergenic |
| AGACTTTGGTGCACTGAGTC+CGG | 0.461560 | 8.3:-79156261 | MS.gene35250:CDS |
| TTAAAAGCGTTGTTAGCTCC+TGG | 0.463507 | 8.3:-79157901 | MS.gene35250:CDS |
| TCCATCTTCAGGTTGTGATT+GGG | 0.472477 | 8.3:-79156573 | MS.gene35250:CDS |
| GGGACTGATGATGTTTGAAC+AGG | 0.472804 | 8.3:+79157997 | None:intergenic |
| GGTGCACTGAGTCCGGTTGT+TGG | 0.478743 | 8.3:-79156254 | MS.gene35250:CDS |
| CGACAACCTAATAAAGGCCT+GGG | 0.480173 | 8.3:+79158128 | None:intergenic |
| GTTTCCCTTCACCCCATTCA+GGG | 0.481122 | 8.3:+79157761 | None:intergenic |
| TCGACAACCTAATAAAGGCC+TGG | 0.481266 | 8.3:+79158127 | None:intergenic |
| CCCCAAAGTAGCGGAGACTT+TGG | 0.482551 | 8.3:-79156275 | MS.gene35250:CDS |
| TCCGGGAGGAGAGAGAGAAA+AGG | 0.486246 | 8.3:-79156665 | MS.gene35250:CDS |
| GATCCGAGAGCTGGCAGCCG+TGG | 0.487143 | 8.3:-79156496 | MS.gene35250:CDS |
| AACTTCGGCAGAGGTTATCA+AGG | 0.487315 | 8.3:+79157975 | None:intergenic |
| ATTGCCTCCATCTTGAGGTT+CGG | 0.487757 | 8.3:+79156406 | None:intergenic |
| GGAAGATCAGAAGAGGGATT+CGG | 0.491187 | 8.3:-79156070 | MS.gene35250:CDS |
| GAGAGAGAGAAAAGGGTGGA+AGG | 0.491297 | 8.3:-79156657 | MS.gene35250:CDS |
| CCGGGAGGAGAGAGAGAAAA+GGG | 0.498010 | 8.3:-79156664 | MS.gene35250:CDS |
| CGGAACACGTATCTAGGATC+AGG | 0.500149 | 8.3:+79157643 | None:intergenic |
| CTCGTTGAGCACATACTGGT+CGG | 0.500573 | 8.3:-79156714 | MS.gene35250:CDS |
| TGCGGCAAGTGCCATGAAGA+TGG | 0.500784 | 8.3:+79156133 | None:intergenic |
| GTTGGCCCTGAATGGGGTGA+AGG | 0.501092 | 8.3:-79157766 | MS.gene35250:CDS |
| AAGGGATCTCATTGTGGAGT+TGG | 0.502031 | 8.3:-79157826 | MS.gene35250:CDS |
| TCGGATCTACCAACCACATC+GGG | 0.502382 | 8.3:+79156512 | None:intergenic |
| CAAGATCCAACCCAGGAGCT+TGG | 0.503040 | 8.3:-79156547 | MS.gene35250:CDS |
| ATGTATTGGCAAGAACAAAC+AGG | 0.506986 | 8.3:-79157713 | MS.gene35250:CDS |
| CTTGAGGTTCGGATAGAAGA+TGG | 0.507376 | 8.3:+79156417 | None:intergenic |
| GTTGCAAGTTTAGTAAGGAC+AGG | 0.508269 | 8.3:-79157549 | MS.gene35250:intron |
| GGCAAGAACAAACAGGAGAA+TGG | 0.510514 | 8.3:-79157706 | MS.gene35250:CDS |
| ATTCATATAAATGCCGAAAA+GGG | 0.511316 | 8.3:-79156368 | MS.gene35250:CDS |
| AATGCAGGTTGGCCCTGAAT+GGG | 0.514543 | 8.3:-79157773 | MS.gene35250:CDS |
| ACCCAATCACAACCTGAAGA+TGG | 0.516099 | 8.3:+79156572 | None:intergenic |
| GCCTTTATTAGGTTGTCGAT+AGG | 0.516364 | 8.3:-79158123 | MS.gene35250:CDS |
| GTTTGTGAGATACGACTTCG+AGG | 0.518240 | 8.3:-79158024 | MS.gene35250:CDS |
| ATGTTGTTATATCTTCAAAC+CGG | 0.520294 | 8.3:+79157623 | None:intergenic |
| TGGTAAACCATTAGTACAGC+TGG | 0.521217 | 8.3:-79156189 | MS.gene35250:CDS |
| TCTCTGGGTTTGAGAAGTAC+TGG | 0.531608 | 8.3:-79158099 | MS.gene35250:CDS |
| CTTGAAGCATGGCGCGAGCG+TGG | 0.532811 | 8.3:-79156467 | MS.gene35250:CDS |
| ATCCGAGAGCTGGCAGCCGT+GGG | 0.537636 | 8.3:-79156495 | MS.gene35250:CDS |
| GGTGTTAAAAGGCAGCAAAT+CGG | 0.539455 | 8.3:-79157805 | MS.gene35250:CDS |
| AGGTTGTCGATAGGCTCTCT+GGG | 0.543318 | 8.3:-79158114 | MS.gene35250:CDS |
| TTGGCCCTGAATGGGGTGAA+GGG | 0.544814 | 8.3:-79157765 | MS.gene35250:CDS |
| TTGACTCGTTGAGCACATAC+TGG | 0.554206 | 8.3:-79156718 | MS.gene35250:CDS |
| GATTCTAAGTCAGAAATGTC+AGG | 0.555492 | 8.3:+79156686 | None:intergenic |
| CTTCTATCCGAACCTCAAGA+TGG | 0.556068 | 8.3:-79156413 | MS.gene35250:CDS |
| GCACTGAGTCCGGTTGTTGG+AGG | 0.556371 | 8.3:-79156251 | MS.gene35250:CDS |
| TTCGAAGGAAGATCAGAAGA+GGG | 0.558928 | 8.3:-79156076 | MS.gene35250:CDS |
| TCGTTGAGCACATACTGGTC+GGG | 0.560757 | 8.3:-79156713 | MS.gene35250:CDS |
| AGAAGATTGCCTCCATCTTG+AGG | 0.562373 | 8.3:+79156401 | None:intergenic |
| AATCAACCAAGCTCCTGGGT+TGG | 0.563544 | 8.3:+79156541 | None:intergenic |
| TGACAAGTATATGGATCCCC+AGG | 0.575787 | 8.3:-79158145 | None:intergenic |
| AGCTGTAGAGTTCAAGGTGA+AGG | 0.578146 | 8.3:-79156218 | MS.gene35250:CDS |
| ACTGGAATTGAACCGAACAC+TGG | 0.584986 | 8.3:-79158081 | MS.gene35250:CDS |
| TGGTTGGTAGATCCGAGAGC+TGG | 0.587077 | 8.3:-79156505 | MS.gene35250:CDS |
| CATGCTTCAAGCTTTCCCCA+CGG | 0.589453 | 8.3:+79156479 | None:intergenic |
| CGTGGGGAAAGCTTGAAGCA+TGG | 0.596348 | 8.3:-79156478 | MS.gene35250:CDS |
| ACATTTCTGACTTAGAATCC+GGG | 0.603126 | 8.3:-79156682 | MS.gene35250:CDS |
| ATCACGTATAACTTCGGCAG+AGG | 0.604581 | 8.3:+79157966 | None:intergenic |
| CATATAAATGCCGAAAAGGG+TGG | 0.606361 | 8.3:-79156365 | MS.gene35250:CDS |
| GAACAATCAACCAAGCTCCT+GGG | 0.607466 | 8.3:+79156537 | None:intergenic |
| TTTCGAAGGAAGATCAGAAG+AGG | 0.610704 | 8.3:-79156077 | MS.gene35250:CDS |
| CTGTGTATCACGTATAACTT+CGG | 0.610865 | 8.3:+79157960 | None:intergenic |
| ATTGTTCGTCCCGATGTGGT+TGG | 0.613008 | 8.3:-79156521 | MS.gene35250:CDS |
| AACAAATGGAGTTGTTATGA+AGG | 0.614304 | 8.3:+79156595 | None:intergenic |
| GCTTGCATGCCTCAATGCTG+AGG | 0.626470 | 8.3:+79156102 | None:intergenic |
| AGCTGTTGACCTCAGCATTG+AGG | 0.627543 | 8.3:-79156111 | MS.gene35250:CDS |
| ACTTCGGCAGAGGTTATCAA+GGG | 0.632357 | 8.3:+79157976 | None:intergenic |
| CCTCAGATAGTTCTGCTGCA+AGG | 0.634975 | 8.3:-79157595 | MS.gene35250:CDS |
| CTCGGATCTACCAACCACAT+CGG | 0.640213 | 8.3:+79156511 | None:intergenic |
| AAACAGGAGAATGGAAAACC+AGG | 0.643217 | 8.3:-79157697 | MS.gene35250:CDS |
| GGGAAGAAGGGATCTCATTG+TGG | 0.645030 | 8.3:-79157832 | MS.gene35250:CDS |
| CCAAAGTCTCCGCTACTTTG+GGG | 0.645734 | 8.3:+79156275 | None:intergenic |
| CCTTGCAGCAGAACTATCTG+AGG | 0.650920 | 8.3:+79157595 | None:intergenic |
| GTTGATTGTTCGTCCCGATG+TGG | 0.653420 | 8.3:-79156525 | MS.gene35250:CDS |
| CTATCCGAACCTCAAGATGG+AGG | 0.654553 | 8.3:-79156410 | MS.gene35250:CDS |
| GGAGGAGAGAGAGAAAAGGG+TGG | 0.657083 | 8.3:-79156661 | MS.gene35250:CDS |
| ATACCTAGTCCCCAAAGTAG+CGG | 0.662442 | 8.3:-79156284 | MS.gene35250:CDS |
| TCCGAGAGCTGGCAGCCGTG+GGG | 0.668783 | 8.3:-79156494 | MS.gene35250:CDS |
| GCGATCTCCAAACATGCATG+AGG | 0.673993 | 8.3:+79157865 | None:intergenic |
| ATTGCGACACGTGACGTGCG+TGG | 0.677610 | 8.3:-79156165 | MS.gene35250:CDS |
| ATGCAGGTTGGCCCTGAATG+GGG | 0.680133 | 8.3:-79157772 | MS.gene35250:CDS |
| AATGCTGAGGTCAACAGCTG+CGG | 0.681482 | 8.3:+79156115 | None:intergenic |
| TGAGGATTATAGAAACAACC+AGG | 0.699777 | 8.3:+79157883 | None:intergenic |
| TGGGTTGCAAGATCCAACCC+AGG | 0.701236 | 8.3:-79156554 | MS.gene35250:CDS |
| GTTCAAGGTGAAGGAAAGCG+TGG | 0.702926 | 8.3:-79156209 | MS.gene35250:CDS |
| CTTCGGCAGAGGTTATCAAG+GGG | 0.718907 | 8.3:+79157977 | None:intergenic |
| TTTCTGACTTAGAATCCGGG+AGG | 0.722320 | 8.3:-79156679 | MS.gene35250:CDS |
| GACAACCTAATAAAGGCCTG+GGG | 0.731055 | 8.3:+79158129 | None:intergenic |
| GCGACACGTGACGTGCGTGG+AGG | 0.761972 | 8.3:-79156162 | MS.gene35250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCAAAAAAAAATTAAAAAAA+TGG | - | chr8.3:79156930-79156949 | MS.gene35250:intron | 10.0% |
| !!! | AAAGTGATTAATTTTATAGT+AGG | + | chr8.3:79156882-79156901 | None:intergenic | 15.0% |
| !!! | CATACATTTTATTAACATTT+TGG | + | chr8.3:79157392-79157411 | None:intergenic | 15.0% |
| !!! | AAACCTATGATTCTTTTTAA+CGG | - | chr8.3:79156451-79156470 | MS.gene35250:CDS | 20.0% |
| !!! | GCATTCAAATTTTAAAATCA+AGG | - | chr8.3:79156739-79156758 | MS.gene35250:intron | 20.0% |
| !!! | TTATGATAATGGTGAATATA+CGG | - | chr8.3:79157108-79157127 | MS.gene35250:intron | 20.0% |
| !!! | TTGATAGTTATTAAATGACA+GGG | - | chr8.3:79157443-79157462 | MS.gene35250:intron | 20.0% |
| !!! | TTTAACTTTCAAATGCAATT+CGG | + | chr8.3:79156524-79156543 | None:intergenic | 20.0% |
| !!! | TTTGATAGTTATTAAATGAC+AGG | - | chr8.3:79157442-79157461 | MS.gene35250:intron | 20.0% |
| ! | AATATACGGTAAGGTTAATT+TGG | - | chr8.3:79157122-79157141 | MS.gene35250:intron | 25.0% |
| ! | AATTCATATAAATGCCGAAA+AGG | - | chr8.3:79157824-79157843 | MS.gene35250:CDS | 25.0% |
| ! | ACAAATCAATATCTTTCACT+TGG | - | chr8.3:79157082-79157101 | MS.gene35250:intron | 25.0% |
| ! | ATGTTGTTATATCTTCAAAC+CGG | + | chr8.3:79156573-79156592 | None:intergenic | 25.0% |
| ! | ATTCATATAAATGCCGAAAA+GGG | - | chr8.3:79157825-79157844 | MS.gene35250:CDS | 25.0% |
| AACAAATGGAGTTGTTATGA+AGG | + | chr8.3:79157601-79157620 | None:intergenic | 30.0% | |
| ATAATGGTGAATATACGGTA+AGG | - | chr8.3:79157113-79157132 | MS.gene35250:intron | 30.0% | |
| CATCCGTTAAAAAGAATCAT+AGG | + | chr8.3:79156457-79156476 | None:intergenic | 30.0% | |
| ! | CTATGATTCTTTTTAACGGA+TGG | - | chr8.3:79156455-79156474 | MS.gene35250:CDS | 30.0% |
| ! | CTTTTAAATCAGATTCTTCG+AGG | + | chr8.3:79156279-79156298 | None:intergenic | 30.0% |
| !! | TCACTTGGCTTTTATGATAA+TGG | - | chr8.3:79157097-79157116 | MS.gene35250:intron | 30.0% |
| !!! | AATCGGCATTTTTAAAATGC+AGG | - | chr8.3:79156405-79156424 | MS.gene35250:CDS | 30.0% |
| !!! | TTTTTTTTGCAAAAGCCAGA+GGG | + | chr8.3:79156920-79156939 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGCAAAAGCCAG+AGG | + | chr8.3:79156921-79156940 | None:intergenic | 30.0% |
| ACATTTCTGACTTAGAATCC+GGG | - | chr8.3:79157511-79157530 | MS.gene35250:intron | 35.0% | |
| CTAAACTTGCAACTGAAGAT+TGG | + | chr8.3:79156637-79156656 | None:intergenic | 35.0% | |
| CTATAATCCTCATGCATGTT+TGG | - | chr8.3:79156321-79156340 | MS.gene35250:CDS | 35.0% | |
| CTGTGTATCACGTATAACTT+CGG | + | chr8.3:79156236-79156255 | None:intergenic | 35.0% | |
| CTTCAGTTGCAAGTTTAGTA+AGG | - | chr8.3:79156639-79156658 | MS.gene35250:CDS | 35.0% | |
| GACATTTCTGACTTAGAATC+CGG | - | chr8.3:79157510-79157529 | MS.gene35250:intron | 35.0% | |
| GATTCTAAGTCAGAAATGTC+AGG | + | chr8.3:79157510-79157529 | None:intergenic | 35.0% | |
| GCAAAAAGTAACTGTCTGAA+TGG | - | chr8.3:79156993-79157012 | MS.gene35250:intron | 35.0% | |
| GCTAATGTGACACTCATAAT+GGG | + | chr8.3:79156975-79156994 | None:intergenic | 35.0% | |
| GTGAAGATACATGATCTATC+TGG | - | chr8.3:79157558-79157577 | MS.gene35250:CDS | 35.0% | |
| TGAGGATTATAGAAACAACC+AGG | + | chr8.3:79156313-79156332 | None:intergenic | 35.0% | |
| TGCTAATGTGACACTCATAA+TGG | + | chr8.3:79156976-79156995 | None:intergenic | 35.0% | |
| TGTACCTCAAGCAACATATT+TGG | + | chr8.3:79156806-79156825 | None:intergenic | 35.0% | |
| ! | ATGTATTGGCAAGAACAAAC+AGG | - | chr8.3:79156480-79156499 | MS.gene35250:CDS | 35.0% |
| ! | ATTCCAGATTTTCCAGTGTT+CGG | + | chr8.3:79156127-79156146 | None:intergenic | 35.0% |
| ! | CACAGTTCTCATGTGTTTTT+CGG | + | chr8.3:79157871-79157890 | None:intergenic | 35.0% |
| ! | TTTAACGGATGGACATGTAT+TGG | - | chr8.3:79156466-79156485 | MS.gene35250:CDS | 35.0% |
| ! | TTTCTTTGCAATCTGAAGCA+TGG | - | chr8.3:79157348-79157367 | MS.gene35250:intron | 35.0% |
| !! | ATTGTGGAGTTGGTGTTAAA+AGG | - | chr8.3:79156377-79156396 | MS.gene35250:CDS | 35.0% |
| !!! | GGCATTTTTAAAATGCAGGT+TGG | - | chr8.3:79156409-79156428 | MS.gene35250:CDS | 35.0% |
| AAACAGGAGAATGGAAAACC+AGG | - | chr8.3:79156496-79156515 | MS.gene35250:CDS | 40.0% | |
| ACATATTTGGACCAAGGACA+TGG | + | chr8.3:79156793-79156812 | None:intergenic | 40.0% | |
| ACTCCATTTGTTCCATCTTC+AGG | - | chr8.3:79157609-79157628 | MS.gene35250:CDS | 40.0% | |
| ATAGTAGGAATGACACAGTC+AGG | + | chr8.3:79156867-79156886 | None:intergenic | 40.0% | |
| CAACCTGAAGATGGAACAAA+TGG | + | chr8.3:79157615-79157634 | None:intergenic | 40.0% | |
| CAAGCAACATATTTGGACCA+AGG | + | chr8.3:79156799-79156818 | None:intergenic | 40.0% | |
| CATATAAATGCCGAAAAGGG+TGG | - | chr8.3:79157828-79157847 | MS.gene35250:CDS | 40.0% | |
| CGAAAAACACATGAGAACTG+TGG | - | chr8.3:79157869-79157888 | MS.gene35250:CDS | 40.0% | |
| CTTCTGATCTTCCTTCGAAA+AGG | + | chr8.3:79158116-79158135 | None:intergenic | 40.0% | |
| GCCTATCGACAACCTAATAA+AGG | + | chr8.3:79156074-79156093 | None:intergenic | 40.0% | |
| GGTGTTAAAAGGCAGCAAAT+CGG | - | chr8.3:79156388-79156407 | MS.gene35250:CDS | 40.0% | |
| GTTGCAAGTTTAGTAAGGAC+AGG | - | chr8.3:79156644-79156663 | MS.gene35250:CDS | 40.0% | |
| TCCCTTCTTCCCTGAAAATA+CGG | + | chr8.3:79156353-79156372 | None:intergenic | 40.0% | |
| TGGTAAACCATTAGTACAGC+TGG | - | chr8.3:79158004-79158023 | MS.gene35250:CDS | 40.0% | |
| TTCGAAGGAAGATCAGAAGA+GGG | - | chr8.3:79158117-79158136 | MS.gene35250:CDS | 40.0% | |
| TTTCGAAGGAAGATCAGAAG+AGG | - | chr8.3:79158116-79158135 | MS.gene35250:CDS | 40.0% | |
| ! | GCCTTTATTAGGTTGTCGAT+AGG | - | chr8.3:79156070-79156089 | MS.gene35250:CDS | 40.0% |
| ! | TGGTCCAAATATGTTGCTTG+AGG | - | chr8.3:79156799-79156818 | MS.gene35250:intron | 40.0% |
| !! | CTAAGCTTGCTGCATGATAT+AGG | - | chr8.3:79156837-79156856 | MS.gene35250:intron | 40.0% |
| !! | TCCATCTTCAGGTTGTGATT+GGG | - | chr8.3:79157620-79157639 | MS.gene35250:CDS | 40.0% |
| !! | TTAAAAGCGTTGTTAGCTCC+TGG | - | chr8.3:79156292-79156311 | MS.gene35250:CDS | 40.0% |
| !! | TTCCATCTTCAGGTTGTGAT+TGG | - | chr8.3:79157619-79157638 | MS.gene35250:CDS | 40.0% |
| AACTTCGGCAGAGGTTATCA+AGG | + | chr8.3:79156221-79156240 | None:intergenic | 45.0% | |
| AAGGGATCTCATTGTGGAGT+TGG | - | chr8.3:79156367-79156386 | MS.gene35250:CDS | 45.0% | |
| ACCAGATGTGACACTCACAA+TGG | - | chr8.3:79157200-79157219 | MS.gene35250:intron | 45.0% | |
| ACCATAACACTCCATGTCCT+TGG | - | chr8.3:79156779-79156798 | MS.gene35250:intron | 45.0% | |
| ACCCAATCACAACCTGAAGA+TGG | + | chr8.3:79157624-79157643 | None:intergenic | 45.0% | |
| ACTGGAATTGAACCGAACAC+TGG | - | chr8.3:79156112-79156131 | MS.gene35250:CDS | 45.0% | |
| ACTTCGGCAGAGGTTATCAA+GGG | + | chr8.3:79156220-79156239 | None:intergenic | 45.0% | |
| AGAAGATTGCCTCCATCTTG+AGG | + | chr8.3:79157795-79157814 | None:intergenic | 45.0% | |
| AGCTGTAGAGTTCAAGGTGA+AGG | - | chr8.3:79157975-79157994 | MS.gene35250:CDS | 45.0% | |
| ATACCTAGTCCCCAAAGTAG+CGG | - | chr8.3:79157909-79157928 | MS.gene35250:CDS | 45.0% | |
| ATCACGTATAACTTCGGCAG+AGG | + | chr8.3:79156230-79156249 | None:intergenic | 45.0% | |
| ATGACAAACCCTCCAACAAC+CGG | + | chr8.3:79157954-79157973 | None:intergenic | 45.0% | |
| ATGTGACACTCACAATGGGA+CGG | - | chr8.3:79157205-79157224 | MS.gene35250:intron | 45.0% | |
| ATTGCCTCCATCTTGAGGTT+CGG | + | chr8.3:79157790-79157809 | None:intergenic | 45.0% | |
| CATGAGAACTGTGGCTTCTA+CGG | - | chr8.3:79157878-79157897 | MS.gene35250:CDS | 45.0% | |
| CCAGATGTGACACTCACAAT+GGG | - | chr8.3:79157201-79157220 | MS.gene35250:intron | 45.0% | |
| CGACAACCTAATAAAGGCCT+GGG | + | chr8.3:79156068-79156087 | None:intergenic | 45.0% | |
| CTGATCCTAGATACGTGTTC+CGG | - | chr8.3:79156551-79156570 | MS.gene35250:CDS | 45.0% | |
| CTTCTATCCGAACCTCAAGA+TGG | - | chr8.3:79157780-79157799 | MS.gene35250:CDS | 45.0% | |
| CTTGAGGTTCGGATAGAAGA+TGG | + | chr8.3:79157779-79157798 | None:intergenic | 45.0% | |
| GAACAATCAACCAAGCTCCT+GGG | + | chr8.3:79157659-79157678 | None:intergenic | 45.0% | |
| GAACCGAACACTGGAAAATC+TGG | - | chr8.3:79156121-79156140 | MS.gene35250:CDS | 45.0% | |
| GACAACCTAATAAAGGCCTG+GGG | + | chr8.3:79156067-79156086 | None:intergenic | 45.0% | |
| GCATTAGAGATTACTCCCTC+TGG | - | chr8.3:79156902-79156921 | MS.gene35250:intron | 45.0% | |
| GGAAGATCAGAAGAGGGATT+CGG | - | chr8.3:79158123-79158142 | MS.gene35250:CDS | 45.0% | |
| GGCAAGAACAAACAGGAGAA+TGG | - | chr8.3:79156487-79156506 | MS.gene35250:CDS | 45.0% | |
| GTCATGAGCTGTAGAGTTCA+AGG | - | chr8.3:79157969-79157988 | MS.gene35250:CDS | 45.0% | |
| GTTTGTGAGATACGACTTCG+AGG | - | chr8.3:79156169-79156188 | MS.gene35250:CDS | 45.0% | |
| TCAAACCGGAACACGTATCT+AGG | + | chr8.3:79156559-79156578 | None:intergenic | 45.0% | |
| TCGACAACCTAATAAAGGCC+TGG | + | chr8.3:79156069-79156088 | None:intergenic | 45.0% | |
| TTCAAATGCAATTCGGCACC+TGG | + | chr8.3:79156517-79156536 | None:intergenic | 45.0% | |
| TTTCTGACTTAGAATCCGGG+AGG | - | chr8.3:79157514-79157533 | MS.gene35250:intron | 45.0% | |
| ! | ACCAAAGTCTCCGCTACTTT+GGG | + | chr8.3:79157922-79157941 | None:intergenic | 45.0% |
| ! | ACCAAGGACATGGAGTGTTA+TGG | + | chr8.3:79156783-79156802 | None:intergenic | 45.0% |
| ! | CTACTTTGGGGACTAGGTAT+TGG | + | chr8.3:79157909-79157928 | None:intergenic | 45.0% |
| ! | GAAAAACTCGCCACCCTTTT+CGG | + | chr8.3:79157841-79157860 | None:intergenic | 45.0% |
| ! | GGGACTGATGATGTTTGAAC+AGG | + | chr8.3:79156199-79156218 | None:intergenic | 45.0% |
| ! | TCTCTGGGTTTGAGAAGTAC+TGG | - | chr8.3:79156094-79156113 | MS.gene35250:CDS | 45.0% |
| ! | TGGAGATCGCCGTATTTTCA+GGG | - | chr8.3:79156341-79156360 | MS.gene35250:CDS | 45.0% |
| ! | TTGACTCGTTGAGCACATAC+TGG | - | chr8.3:79157475-79157494 | MS.gene35250:intron | 45.0% |
| ! | TTGGAGATCGCCGTATTTTC+AGG | - | chr8.3:79156340-79156359 | MS.gene35250:CDS | 45.0% |
| !! | GCCGTATTTTCAGGGAAGAA+GGG | - | chr8.3:79156349-79156368 | MS.gene35250:CDS | 45.0% |
| AATCAACCAAGCTCCTGGGT+TGG | + | chr8.3:79157655-79157674 | None:intergenic | 50.0% | |
| AATGCTGAGGTCAACAGCTG+CGG | + | chr8.3:79158081-79158100 | None:intergenic | 50.0% | |
| AGCTGTTGACCTCAGCATTG+AGG | - | chr8.3:79158082-79158101 | MS.gene35250:CDS | 50.0% | |
| AGGTTGTCGATAGGCTCTCT+GGG | - | chr8.3:79156079-79156098 | MS.gene35250:CDS | 50.0% | |
| ATTGTTCGTCCCGATGTGGT+TGG | - | chr8.3:79157672-79157691 | MS.gene35250:CDS | 50.0% | |
| CACCAAAGTCTCCGCTACTT+TGG | + | chr8.3:79157923-79157942 | None:intergenic | 50.0% | |
| CATGCTTCAAGCTTTCCCCA+CGG | + | chr8.3:79157717-79157736 | None:intergenic | 50.0% | |
| CCCATTGTGAGTGTCACATC+TGG | + | chr8.3:79157204-79157223 | None:intergenic | 50.0% | |
| CCTTGCAGCAGAACTATCTG+AGG | + | chr8.3:79156601-79156620 | None:intergenic | 50.0% | |
| CGAACAATCAACCAAGCTCC+TGG | + | chr8.3:79157660-79157679 | None:intergenic | 50.0% | |
| CGCAATGCCAGCTGTACTAA+TGG | + | chr8.3:79158014-79158033 | None:intergenic | 50.0% | |
| CTATCCGAACCTCAAGATGG+AGG | - | chr8.3:79157783-79157802 | MS.gene35250:CDS | 50.0% | |
| CTCGGATCTACCAACCACAT+CGG | + | chr8.3:79157685-79157704 | None:intergenic | 50.0% | |
| CTCGTTGAGCACATACTGGT+CGG | - | chr8.3:79157479-79157498 | MS.gene35250:intron | 50.0% | |
| CTTCGGCAGAGGTTATCAAG+GGG | + | chr8.3:79156219-79156238 | None:intergenic | 50.0% | |
| GAGAGAGAGAAAAGGGTGGA+AGG | - | chr8.3:79157536-79157555 | MS.gene35250:intron | 50.0% | |
| GCGATCTCCAAACATGCATG+AGG | + | chr8.3:79156331-79156350 | None:intergenic | 50.0% | |
| GGGAAGAAGGGATCTCATTG+TGG | - | chr8.3:79156361-79156380 | MS.gene35250:CDS | 50.0% | |
| GTTCAAGGTGAAGGAAAGCG+TGG | - | chr8.3:79157984-79158003 | MS.gene35250:CDS | 50.0% | |
| GTTGATTGTTCGTCCCGATG+TGG | - | chr8.3:79157668-79157687 | MS.gene35250:CDS | 50.0% | |
| GTTTCCCTTCACCCCATTCA+GGG | + | chr8.3:79156435-79156454 | None:intergenic | 50.0% | |
| TAGGTTGTCGATAGGCTCTC+TGG | - | chr8.3:79156078-79156097 | MS.gene35250:CDS | 50.0% | |
| TCGGATCTACCAACCACATC+GGG | + | chr8.3:79157684-79157703 | None:intergenic | 50.0% | |
| TCGTTGAGCACATACTGGTC+GGG | - | chr8.3:79157480-79157499 | MS.gene35250:intron | 50.0% | |
| TGGATCCCCAGGCCTTTATT+AGG | - | chr8.3:79156059-79156078 | MS.gene35250:CDS | 50.0% | |
| ! | AAATGCAGGTTGGCCCTGAA+TGG | - | chr8.3:79156419-79156438 | MS.gene35250:CDS | 50.0% |
| ! | AATGCAGGTTGGCCCTGAAT+GGG | - | chr8.3:79156420-79156439 | MS.gene35250:CDS | 50.0% |
| ! | AGACTTTGGTGCACTGAGTC+CGG | - | chr8.3:79157932-79157951 | MS.gene35250:CDS | 50.0% |
| ! | AGGCATGCAAGCCTTTTCGA+AGG | - | chr8.3:79158102-79158121 | MS.gene35250:CDS | 50.0% |
| ! | CCAAAGTCTCCGCTACTTTG+GGG | + | chr8.3:79157921-79157940 | None:intergenic | 50.0% |
| ! | CCTCAGATAGTTCTGCTGCA+AGG | - | chr8.3:79156598-79156617 | MS.gene35250:CDS | 50.0% |
| ! | CGGAACACGTATCTAGGATC+AGG | + | chr8.3:79156553-79156572 | None:intergenic | 50.0% |
| !! | CGCCGTATTTTCAGGGAAGA+AGG | - | chr8.3:79156348-79156367 | MS.gene35250:CDS | 50.0% |
| CAAGATCCAACCCAGGAGCT+TGG | - | chr8.3:79157646-79157665 | MS.gene35250:CDS | 55.0% | |
| CACTGAGTCCGGTTGTTGGA+GGG | - | chr8.3:79157943-79157962 | MS.gene35250:CDS | 55.0% | |
| CCGGGAGGAGAGAGAGAAAA+GGG | - | chr8.3:79157529-79157548 | MS.gene35250:intron | 55.0% | |
| CGTGGGGAAAGCTTGAAGCA+TGG | - | chr8.3:79157715-79157734 | MS.gene35250:CDS | 55.0% | |
| GACACTCACAATGGGACGGA+GGG | - | chr8.3:79157209-79157228 | MS.gene35250:intron | 55.0% | |
| GCTTGCATGCCTCAATGCTG+AGG | + | chr8.3:79158094-79158113 | None:intergenic | 55.0% | |
| GGAGGAGAGAGAGAAAAGGG+TGG | - | chr8.3:79157532-79157551 | MS.gene35250:intron | 55.0% | |
| GGAGGATGCTGCCATCTTCA+TGG | - | chr8.3:79158049-79158068 | MS.gene35250:CDS | 55.0% | |
| GGTTTCCCTTCACCCCATTC+AGG | + | chr8.3:79156436-79156455 | None:intergenic | 55.0% | |
| TCCGGGAGGAGAGAGAGAAA+AGG | - | chr8.3:79157528-79157547 | MS.gene35250:intron | 55.0% | |
| TGACACTCACAATGGGACGG+AGG | - | chr8.3:79157208-79157227 | MS.gene35250:intron | 55.0% | |
| TGCGGCAAGTGCCATGAAGA+TGG | + | chr8.3:79158063-79158082 | None:intergenic | 55.0% | |
| TGGGTTGCAAGATCCAACCC+AGG | - | chr8.3:79157639-79157658 | MS.gene35250:CDS | 55.0% | |
| TTGGCCCTGAATGGGGTGAA+GGG | - | chr8.3:79156428-79156447 | MS.gene35250:CDS | 55.0% | |
| ! | ATGCAGGTTGGCCCTGAATG+GGG | - | chr8.3:79156421-79156440 | MS.gene35250:CDS | 55.0% |
| ! | CCCCAAAGTAGCGGAGACTT+TGG | - | chr8.3:79157918-79157937 | MS.gene35250:CDS | 55.0% |
| ! | CCCTTTTCTCTCTCTCCTCC+CGG | + | chr8.3:79157532-79157551 | None:intergenic | 55.0% |
| ! | TCTCCGCTACTTTGGGGACT+AGG | + | chr8.3:79157915-79157934 | None:intergenic | 55.0% |
| !! | TGGTTGGTAGATCCGAGAGC+TGG | - | chr8.3:79157688-79157707 | MS.gene35250:CDS | 55.0% |
| ATTGCGACACGTGACGTGCG+TGG | - | chr8.3:79158028-79158047 | MS.gene35250:CDS | 60.0% | |
| GCACTGAGTCCGGTTGTTGG+AGG | - | chr8.3:79157942-79157961 | MS.gene35250:CDS | 60.0% | |
| GGTGCACTGAGTCCGGTTGT+TGG | - | chr8.3:79157939-79157958 | MS.gene35250:CDS | 60.0% | |
| GTTGGCCCTGAATGGGGTGA+AGG | - | chr8.3:79156427-79156446 | MS.gene35250:CDS | 60.0% | |
| ATCCGAGAGCTGGCAGCCGT+GGG | - | chr8.3:79157698-79157717 | MS.gene35250:CDS | 65.0% | |
| CTTGAAGCATGGCGCGAGCG+TGG | - | chr8.3:79157726-79157745 | MS.gene35250:CDS | 65.0% | |
| GATCCGAGAGCTGGCAGCCG+TGG | - | chr8.3:79157697-79157716 | MS.gene35250:CDS | 70.0% | |
| GCGACACGTGACGTGCGTGG+AGG | - | chr8.3:79158031-79158050 | MS.gene35250:CDS | 70.0% | |
| TCCCCACGGCTGCCAGCTCT+CGG | + | chr8.3:79157703-79157722 | None:intergenic | 70.0% | |
| TCCGAGAGCTGGCAGCCGTG+GGG | - | chr8.3:79157699-79157718 | MS.gene35250:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79156058 | 79158157 | 79156058 | ID=MS.gene35250 |
| chr8.3 | mRNA | 79156058 | 79158157 | 79156058 | ID=MS.gene35250.t1;Parent=MS.gene35250 |
| chr8.3 | exon | 79157550 | 79158157 | 79157550 | ID=MS.gene35250.t1.exon1;Parent=MS.gene35250.t1 |
| chr8.3 | CDS | 79157550 | 79158157 | 79157550 | ID=cds.MS.gene35250.t1;Parent=MS.gene35250.t1 |
| chr8.3 | exon | 79156058 | 79156751 | 79156058 | ID=MS.gene35250.t1.exon2;Parent=MS.gene35250.t1 |
| chr8.3 | CDS | 79156058 | 79156751 | 79156058 | ID=cds.MS.gene35250.t1;Parent=MS.gene35250.t1 |
| Gene Sequence |
| Protein sequence |
