Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35251.t1 | XP_013443975.1 | 97.9 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 4.10E-249 | 870.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35251.t1 | A0A072TKP9 | 97.9 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 3.0e-249 | 870.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35251 | MS.gene063341 | PPI |
| MS.gene35251 | MS.gene75022 | PPI |
| MS.gene030339 | MS.gene35251 | PPI |
| MS.gene66390 | MS.gene35251 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35251.t1 | MTR_8g009770 | 97.921 | 433 | 9 | 0 | 1 | 433 | 1 | 433 | 0.0 | 868 |
| MS.gene35251.t1 | MTR_3g110630 | 39.207 | 454 | 239 | 12 | 1 | 427 | 1 | 444 | 2.59e-91 | 284 |
| MS.gene35251.t1 | MTR_6g090060 | 38.235 | 442 | 232 | 11 | 1 | 429 | 1 | 414 | 1.49e-84 | 265 |
| MS.gene35251.t1 | MTR_5g005420 | 36.283 | 452 | 230 | 12 | 1 | 430 | 1 | 416 | 8.78e-79 | 250 |
| MS.gene35251.t1 | MTR_8g102270 | 39.763 | 337 | 162 | 10 | 95 | 427 | 53 | 352 | 8.11e-58 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35251.t1 | AT5G17640 | 73.349 | 424 | 103 | 6 | 1 | 420 | 1 | 418 | 0.0 | 597 |
| MS.gene35251.t1 | AT1G10020 | 39.262 | 461 | 238 | 13 | 1 | 427 | 1 | 453 | 2.15e-90 | 281 |
| MS.gene35251.t1 | AT4G29310 | 39.636 | 439 | 227 | 10 | 1 | 427 | 1 | 413 | 3.15e-89 | 277 |
| MS.gene35251.t1 | AT3G19680 | 34.747 | 495 | 246 | 13 | 1 | 430 | 1 | 483 | 8.52e-74 | 239 |
| MS.gene35251.t1 | AT1G50040 | 36.229 | 472 | 241 | 15 | 1 | 431 | 1 | 453 | 1.85e-67 | 222 |
| MS.gene35251.t1 | AT4G29310 | 38.507 | 335 | 183 | 8 | 1 | 323 | 1 | 324 | 1.24e-60 | 200 |
Find 122 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCCCTTCACCCCATTC+AGG | 0.254809 | 8.3:-78886910 | None:intergenic |
| TTCCATCTTCAGGTTGTGAT+TGG | 0.257792 | 8.3:+78888096 | MS.gene35251:CDS |
| ACTCCATTTGTTCCATCTTC+AGG | 0.295514 | 8.3:+78888086 | MS.gene35251:CDS |
| TGGATCCCCAGGCCTTTATT+AGG | 0.311476 | 8.3:+78886536 | MS.gene35251:CDS |
| TAGGTTGTCGATAGGCTCTC+TGG | 0.312333 | 8.3:+78886555 | MS.gene35251:CDS |
| ACCAAAGTCTCCGCTACTTT+GGG | 0.330454 | 8.3:-78888396 | None:intergenic |
| CTATAATCCTCATGCATGTT+TGG | 0.342455 | 8.3:+78886798 | MS.gene35251:CDS |
| ATTGTGGAGTTGGTGTTAAA+AGG | 0.354539 | 8.3:+78886854 | MS.gene35251:CDS |
| GAACCGAACACTGGAAAATC+TGG | 0.358986 | 8.3:+78886598 | MS.gene35251:CDS |
| CTAAACTTGCAACTGAAGAT+TGG | 0.389372 | 8.3:-78887111 | None:intergenic |
| TCAAACCGGAACACGTATCT+AGG | 0.390399 | 8.3:-78887033 | None:intergenic |
| TCCCCACGGCTGCCAGCTCT+CGG | 0.391454 | 8.3:-78888177 | None:intergenic |
| CTTCAGTTGCAAGTTTAGTA+AGG | 0.396399 | 8.3:+78887116 | MS.gene35251:CDS |
| GACATTTCTGACTTAGAATC+CGG | 0.396894 | 8.3:+78887987 | MS.gene35251:CDS |
| GCCTATCGACAACCTAATAA+AGG | 0.397474 | 8.3:-78886548 | None:intergenic |
| CACCAAAGTCTCCGCTACTT+TGG | 0.403157 | 8.3:-78888397 | None:intergenic |
| CTACTTTGGGGACTAGGTAT+TGG | 0.403650 | 8.3:-78888383 | None:intergenic |
| TTTAACGGATGGACATGTAT+TGG | 0.403761 | 8.3:+78886943 | MS.gene35251:CDS |
| TCTCCGCTACTTTGGGGACT+AGG | 0.411180 | 8.3:-78888389 | None:intergenic |
| CTGATCCTAGATACGTGTTC+CGG | 0.418994 | 8.3:+78887028 | MS.gene35251:CDS |
| CGCAATGCCAGCTGTACTAA+TGG | 0.422674 | 8.3:-78888488 | None:intergenic |
| AATTCATATAAATGCCGAAA+AGG | 0.425545 | 8.3:+78888301 | MS.gene35251:CDS |
| CTTCTGATCTTCCTTCGAAA+AGG | 0.428055 | 8.3:-78888590 | None:intergenic |
| TTTAACTTTCAAATGCAATT+CGG | 0.430158 | 8.3:-78886998 | None:intergenic |
| GTCATGAGCTGTAGAGTTCA+AGG | 0.432518 | 8.3:+78888446 | MS.gene35251:CDS |
| AAATGCAGGTTGGCCCTGAA+TGG | 0.434195 | 8.3:+78886896 | MS.gene35251:CDS |
| GGAGGATGCTGCCATCTTCA+TGG | 0.442367 | 8.3:+78888526 | MS.gene35251:CDS |
| GTGAAGATACATGATCTATC+TGG | 0.443249 | 8.3:+78888035 | MS.gene35251:CDS |
| CAACCTGAAGATGGAACAAA+TGG | 0.444232 | 8.3:-78888089 | None:intergenic |
| TTCAAATGCAATTCGGCACC+TGG | 0.448516 | 8.3:-78886991 | None:intergenic |
| TCCCTTCTTCCCTGAAAATA+CGG | 0.451160 | 8.3:-78886827 | None:intergenic |
| CATGAGAACTGTGGCTTCTA+CGG | 0.453039 | 8.3:+78888355 | MS.gene35251:CDS |
| CACTGAGTCCGGTTGTTGGA+GGG | 0.453922 | 8.3:+78888420 | MS.gene35251:CDS |
| ATGACAAACCCTCCAACAAC+CGG | 0.456528 | 8.3:-78888428 | None:intergenic |
| CGAACAATCAACCAAGCTCC+TGG | 0.461063 | 8.3:-78888134 | None:intergenic |
| AGACTTTGGTGCACTGAGTC+CGG | 0.461560 | 8.3:+78888409 | MS.gene35251:CDS |
| TTAAAAGCGTTGTTAGCTCC+TGG | 0.463507 | 8.3:+78886769 | MS.gene35251:CDS |
| TCCATCTTCAGGTTGTGATT+GGG | 0.472477 | 8.3:+78888097 | MS.gene35251:CDS |
| GGGACTGATGATGTTTGAAC+AGG | 0.472804 | 8.3:-78886673 | None:intergenic |
| GGTGCACTGAGTCCGGTTGT+TGG | 0.478743 | 8.3:+78888416 | MS.gene35251:CDS |
| CGACAACCTAATAAAGGCCT+GGG | 0.480173 | 8.3:-78886542 | None:intergenic |
| GTTTCCCTTCACCCCATTCA+GGG | 0.481122 | 8.3:-78886909 | None:intergenic |
| TCGACAACCTAATAAAGGCC+TGG | 0.481266 | 8.3:-78886543 | None:intergenic |
| CCCCAAAGTAGCGGAGACTT+TGG | 0.482551 | 8.3:+78888395 | MS.gene35251:CDS |
| TCCGGGAGGAGAGAGAGAAA+AGG | 0.486246 | 8.3:+78888005 | MS.gene35251:CDS |
| GATCCGAGAGCTGGCAGCCG+TGG | 0.487143 | 8.3:+78888174 | MS.gene35251:CDS |
| AACTTCGGCAGAGGTTATCA+AGG | 0.487315 | 8.3:-78886695 | None:intergenic |
| ATTGCCTCCATCTTGAGGTT+CGG | 0.487757 | 8.3:-78888264 | None:intergenic |
| GGAAGATCAGAAGAGGGATT+CGG | 0.491187 | 8.3:+78888600 | MS.gene35251:CDS |
| GAGAGAGAGAAAAGGGTGGA+AGG | 0.491297 | 8.3:+78888013 | MS.gene35251:CDS |
| CCGGGAGGAGAGAGAGAAAA+GGG | 0.498010 | 8.3:+78888006 | MS.gene35251:CDS |
| CGGAACACGTATCTAGGATC+AGG | 0.500149 | 8.3:-78887027 | None:intergenic |
| CTCGTTGAGCACATACTGGT+CGG | 0.500573 | 8.3:+78887956 | MS.gene35251:CDS |
| TGCGGCAAGTGCCATGAAGA+TGG | 0.500784 | 8.3:-78888537 | None:intergenic |
| GTTGGCCCTGAATGGGGTGA+AGG | 0.501092 | 8.3:+78886904 | MS.gene35251:CDS |
| AAGGGATCTCATTGTGGAGT+TGG | 0.502031 | 8.3:+78886844 | MS.gene35251:CDS |
| TCGGATCTACCAACCACATC+GGG | 0.502382 | 8.3:-78888158 | None:intergenic |
| CAAGATCCAACCCAGGAGCT+TGG | 0.503040 | 8.3:+78888123 | MS.gene35251:CDS |
| ATGTATTGGCAAGAACAAAC+AGG | 0.506986 | 8.3:+78886957 | MS.gene35251:CDS |
| CTTGAGGTTCGGATAGAAGA+TGG | 0.507376 | 8.3:-78888253 | None:intergenic |
| GTTGCAAGTTTAGTAAGGAC+AGG | 0.508269 | 8.3:+78887121 | MS.gene35251:CDS |
| GGCAAGAACAAACAGGAGAA+TGG | 0.510514 | 8.3:+78886964 | MS.gene35251:CDS |
| ATTCATATAAATGCCGAAAA+GGG | 0.511316 | 8.3:+78888302 | MS.gene35251:CDS |
| AATGCAGGTTGGCCCTGAAT+GGG | 0.514543 | 8.3:+78886897 | MS.gene35251:CDS |
| ACCCAATCACAACCTGAAGA+TGG | 0.516099 | 8.3:-78888098 | None:intergenic |
| GCCTTTATTAGGTTGTCGAT+AGG | 0.516364 | 8.3:+78886547 | MS.gene35251:CDS |
| GTTTGTGAGATACGACTTCG+AGG | 0.518240 | 8.3:+78886646 | MS.gene35251:CDS |
| ATGTTGTTATATCTTCAAAC+CGG | 0.520294 | 8.3:-78887047 | None:intergenic |
| TGGTAAACCATTAGTACAGC+TGG | 0.521217 | 8.3:+78888481 | MS.gene35251:CDS |
| TCTCTGGGTTTGAGAAGTAC+TGG | 0.531608 | 8.3:+78886571 | MS.gene35251:CDS |
| CTTGAAGCATGGCGCGAGCG+TGG | 0.532811 | 8.3:+78888203 | MS.gene35251:CDS |
| ATCCGAGAGCTGGCAGCCGT+GGG | 0.537636 | 8.3:+78888175 | MS.gene35251:CDS |
| GGTGTTAAAAGGCAGCAAAT+CGG | 0.539455 | 8.3:+78886865 | MS.gene35251:CDS |
| AGGTTGTCGATAGGCTCTCT+GGG | 0.543318 | 8.3:+78886556 | MS.gene35251:CDS |
| TTGGCCCTGAATGGGGTGAA+GGG | 0.544814 | 8.3:+78886905 | MS.gene35251:CDS |
| TTGACTCGTTGAGCACATAC+TGG | 0.554206 | 8.3:+78887952 | MS.gene35251:CDS |
| GATTCTAAGTCAGAAATGTC+AGG | 0.555492 | 8.3:-78887984 | None:intergenic |
| CTTCTATCCGAACCTCAAGA+TGG | 0.556068 | 8.3:+78888257 | MS.gene35251:CDS |
| GCACTGAGTCCGGTTGTTGG+AGG | 0.556371 | 8.3:+78888419 | MS.gene35251:CDS |
| TTCGAAGGAAGATCAGAAGA+GGG | 0.558928 | 8.3:+78888594 | MS.gene35251:CDS |
| TCGTTGAGCACATACTGGTC+GGG | 0.560757 | 8.3:+78887957 | MS.gene35251:CDS |
| AGAAGATTGCCTCCATCTTG+AGG | 0.562373 | 8.3:-78888269 | None:intergenic |
| AATCAACCAAGCTCCTGGGT+TGG | 0.563544 | 8.3:-78888129 | None:intergenic |
| TGACAAGTATATGGATCCCC+AGG | 0.575787 | 8.3:+78886525 | None:intergenic |
| AGCTGTAGAGTTCAAGGTGA+AGG | 0.578146 | 8.3:+78888452 | MS.gene35251:CDS |
| ACTGGAATTGAACCGAACAC+TGG | 0.584986 | 8.3:+78886589 | MS.gene35251:CDS |
| TGGTTGGTAGATCCGAGAGC+TGG | 0.587077 | 8.3:+78888165 | MS.gene35251:CDS |
| CATGCTTCAAGCTTTCCCCA+CGG | 0.589453 | 8.3:-78888191 | None:intergenic |
| CGTGGGGAAAGCTTGAAGCA+TGG | 0.596348 | 8.3:+78888192 | MS.gene35251:CDS |
| ACATTTCTGACTTAGAATCC+GGG | 0.603126 | 8.3:+78887988 | MS.gene35251:CDS |
| ATCACGTATAACTTCGGCAG+AGG | 0.604581 | 8.3:-78886704 | None:intergenic |
| CATATAAATGCCGAAAAGGG+TGG | 0.606361 | 8.3:+78888305 | MS.gene35251:CDS |
| GAACAATCAACCAAGCTCCT+GGG | 0.607466 | 8.3:-78888133 | None:intergenic |
| TTTCGAAGGAAGATCAGAAG+AGG | 0.610704 | 8.3:+78888593 | MS.gene35251:CDS |
| CTGTGTATCACGTATAACTT+CGG | 0.610865 | 8.3:-78886710 | None:intergenic |
| ATTGTTCGTCCCGATGTGGT+TGG | 0.613008 | 8.3:+78888149 | MS.gene35251:CDS |
| AACAAATGGAGTTGTTATGA+AGG | 0.614304 | 8.3:-78888075 | None:intergenic |
| GCTTGCATGCCTCAATGCTG+AGG | 0.626470 | 8.3:-78888568 | None:intergenic |
| AGCTGTTGACCTCAGCATTG+AGG | 0.627543 | 8.3:+78888559 | MS.gene35251:CDS |
| ACTTCGGCAGAGGTTATCAA+GGG | 0.632357 | 8.3:-78886694 | None:intergenic |
| CCTCAGATAGTTCTGCTGCA+AGG | 0.634975 | 8.3:+78887075 | MS.gene35251:CDS |
| CTCGGATCTACCAACCACAT+CGG | 0.640213 | 8.3:-78888159 | None:intergenic |
| AAACAGGAGAATGGAAAACC+AGG | 0.643217 | 8.3:+78886973 | MS.gene35251:CDS |
| GGGAAGAAGGGATCTCATTG+TGG | 0.645030 | 8.3:+78886838 | MS.gene35251:CDS |
| CCAAAGTCTCCGCTACTTTG+GGG | 0.645734 | 8.3:-78888395 | None:intergenic |
| CCTTGCAGCAGAACTATCTG+AGG | 0.650920 | 8.3:-78887075 | None:intergenic |
| GTTGATTGTTCGTCCCGATG+TGG | 0.653420 | 8.3:+78888145 | MS.gene35251:CDS |
| CTATCCGAACCTCAAGATGG+AGG | 0.654553 | 8.3:+78888260 | MS.gene35251:CDS |
| GGAGGAGAGAGAGAAAAGGG+TGG | 0.657083 | 8.3:+78888009 | MS.gene35251:CDS |
| ATACCTAGTCCCCAAAGTAG+CGG | 0.662442 | 8.3:+78888386 | MS.gene35251:CDS |
| TCCGAGAGCTGGCAGCCGTG+GGG | 0.668783 | 8.3:+78888176 | MS.gene35251:CDS |
| GCGATCTCCAAACATGCATG+AGG | 0.673993 | 8.3:-78886805 | None:intergenic |
| ATTGCGACACGTGACGTGCG+TGG | 0.677610 | 8.3:+78888505 | MS.gene35251:CDS |
| ATGCAGGTTGGCCCTGAATG+GGG | 0.680133 | 8.3:+78886898 | MS.gene35251:CDS |
| AATGCTGAGGTCAACAGCTG+CGG | 0.681482 | 8.3:-78888555 | None:intergenic |
| TGAGGATTATAGAAACAACC+AGG | 0.699777 | 8.3:-78886787 | None:intergenic |
| TGGGTTGCAAGATCCAACCC+AGG | 0.701236 | 8.3:+78888116 | MS.gene35251:CDS |
| GTTCAAGGTGAAGGAAAGCG+TGG | 0.702926 | 8.3:+78888461 | MS.gene35251:CDS |
| CTTCGGCAGAGGTTATCAAG+GGG | 0.718907 | 8.3:-78886693 | None:intergenic |
| TTTCTGACTTAGAATCCGGG+AGG | 0.722320 | 8.3:+78887991 | MS.gene35251:CDS |
| GACAACCTAATAAAGGCCTG+GGG | 0.731055 | 8.3:-78886541 | None:intergenic |
| GCGACACGTGACGTGCGTGG+AGG | 0.761972 | 8.3:+78888508 | MS.gene35251:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCAAAAAAAAATTAAAAAAA+TGG | + | chr8.3:78887407-78887426 | MS.gene35251:intron | 10.0% |
| !!! | AAAGTGATTAATTTTATAGT+AGG | - | chr8.3:78887359-78887378 | None:intergenic | 15.0% |
| !!! | CATACATTTTATTAACATTT+TGG | - | chr8.3:78887869-78887888 | None:intergenic | 15.0% |
| !!! | AAACCTATGATTCTTTTTAA+CGG | + | chr8.3:78886928-78886947 | MS.gene35251:CDS | 20.0% |
| !!! | GCATTCAAATTTTAAAATCA+AGG | + | chr8.3:78887216-78887235 | MS.gene35251:intron | 20.0% |
| !!! | TTATGATAATGGTGAATATA+CGG | + | chr8.3:78887585-78887604 | MS.gene35251:intron | 20.0% |
| !!! | TTGATAGTTATTAAATGACA+GGG | + | chr8.3:78887920-78887939 | MS.gene35251:intron | 20.0% |
| !!! | TTTAACTTTCAAATGCAATT+CGG | - | chr8.3:78887001-78887020 | None:intergenic | 20.0% |
| !!! | TTTGATAGTTATTAAATGAC+AGG | + | chr8.3:78887919-78887938 | MS.gene35251:intron | 20.0% |
| ! | AATATACGGTAAGGTTAATT+TGG | + | chr8.3:78887599-78887618 | MS.gene35251:intron | 25.0% |
| ! | AATTCATATAAATGCCGAAA+AGG | + | chr8.3:78888301-78888320 | MS.gene35251:CDS | 25.0% |
| ! | ACAAATCAATATCTTTCACT+TGG | + | chr8.3:78887559-78887578 | MS.gene35251:intron | 25.0% |
| ! | ATGTTGTTATATCTTCAAAC+CGG | - | chr8.3:78887050-78887069 | None:intergenic | 25.0% |
| ! | ATTCATATAAATGCCGAAAA+GGG | + | chr8.3:78888302-78888321 | MS.gene35251:CDS | 25.0% |
| AACAAATGGAGTTGTTATGA+AGG | - | chr8.3:78888078-78888097 | None:intergenic | 30.0% | |
| ATAATGGTGAATATACGGTA+AGG | + | chr8.3:78887590-78887609 | MS.gene35251:intron | 30.0% | |
| CATCCGTTAAAAAGAATCAT+AGG | - | chr8.3:78886934-78886953 | None:intergenic | 30.0% | |
| ! | CTATGATTCTTTTTAACGGA+TGG | + | chr8.3:78886932-78886951 | MS.gene35251:CDS | 30.0% |
| ! | CTTTTAAATCAGATTCTTCG+AGG | - | chr8.3:78886756-78886775 | None:intergenic | 30.0% |
| !! | TCACTTGGCTTTTATGATAA+TGG | + | chr8.3:78887574-78887593 | MS.gene35251:intron | 30.0% |
| !!! | AATCGGCATTTTTAAAATGC+AGG | + | chr8.3:78886882-78886901 | MS.gene35251:CDS | 30.0% |
| !!! | TTTTTTTTGCAAAAGCCAGA+GGG | - | chr8.3:78887397-78887416 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGCAAAAGCCAG+AGG | - | chr8.3:78887398-78887417 | None:intergenic | 30.0% |
| ACATTTCTGACTTAGAATCC+GGG | + | chr8.3:78887988-78888007 | MS.gene35251:CDS | 35.0% | |
| CTAAACTTGCAACTGAAGAT+TGG | - | chr8.3:78887114-78887133 | None:intergenic | 35.0% | |
| CTATAATCCTCATGCATGTT+TGG | + | chr8.3:78886798-78886817 | MS.gene35251:CDS | 35.0% | |
| CTGTGTATCACGTATAACTT+CGG | - | chr8.3:78886713-78886732 | None:intergenic | 35.0% | |
| CTTCAGTTGCAAGTTTAGTA+AGG | + | chr8.3:78887116-78887135 | MS.gene35251:CDS | 35.0% | |
| GACATTTCTGACTTAGAATC+CGG | + | chr8.3:78887987-78888006 | MS.gene35251:CDS | 35.0% | |
| GATTCTAAGTCAGAAATGTC+AGG | - | chr8.3:78887987-78888006 | None:intergenic | 35.0% | |
| GCAAAAAGTAACTGTCTGAA+TGG | + | chr8.3:78887470-78887489 | MS.gene35251:intron | 35.0% | |
| GCTAATGTGACACTCATAAT+GGG | - | chr8.3:78887452-78887471 | None:intergenic | 35.0% | |
| GTGAAGATACATGATCTATC+TGG | + | chr8.3:78888035-78888054 | MS.gene35251:CDS | 35.0% | |
| TGAGGATTATAGAAACAACC+AGG | - | chr8.3:78886790-78886809 | None:intergenic | 35.0% | |
| TGCTAATGTGACACTCATAA+TGG | - | chr8.3:78887453-78887472 | None:intergenic | 35.0% | |
| TGTACCTCAAGCAACATATT+TGG | - | chr8.3:78887283-78887302 | None:intergenic | 35.0% | |
| ! | ATGTATTGGCAAGAACAAAC+AGG | + | chr8.3:78886957-78886976 | MS.gene35251:CDS | 35.0% |
| ! | ATTCCAGATTTTCCAGTGTT+CGG | - | chr8.3:78886604-78886623 | None:intergenic | 35.0% |
| ! | CACAGTTCTCATGTGTTTTT+CGG | - | chr8.3:78888348-78888367 | None:intergenic | 35.0% |
| ! | TTTAACGGATGGACATGTAT+TGG | + | chr8.3:78886943-78886962 | MS.gene35251:CDS | 35.0% |
| ! | TTTCTTTGCAATCTGAAGCA+TGG | + | chr8.3:78887825-78887844 | MS.gene35251:intron | 35.0% |
| !! | ATTGTGGAGTTGGTGTTAAA+AGG | + | chr8.3:78886854-78886873 | MS.gene35251:CDS | 35.0% |
| !!! | GGCATTTTTAAAATGCAGGT+TGG | + | chr8.3:78886886-78886905 | MS.gene35251:CDS | 35.0% |
| AAACAGGAGAATGGAAAACC+AGG | + | chr8.3:78886973-78886992 | MS.gene35251:CDS | 40.0% | |
| ACATATTTGGACCAAGGACA+TGG | - | chr8.3:78887270-78887289 | None:intergenic | 40.0% | |
| ACTCCATTTGTTCCATCTTC+AGG | + | chr8.3:78888086-78888105 | MS.gene35251:CDS | 40.0% | |
| ATAGTAGGAATGACACAGTC+AGG | - | chr8.3:78887344-78887363 | None:intergenic | 40.0% | |
| CAACCTGAAGATGGAACAAA+TGG | - | chr8.3:78888092-78888111 | None:intergenic | 40.0% | |
| CAAGCAACATATTTGGACCA+AGG | - | chr8.3:78887276-78887295 | None:intergenic | 40.0% | |
| CATATAAATGCCGAAAAGGG+TGG | + | chr8.3:78888305-78888324 | MS.gene35251:CDS | 40.0% | |
| CGAAAAACACATGAGAACTG+TGG | + | chr8.3:78888346-78888365 | MS.gene35251:CDS | 40.0% | |
| CTTCTGATCTTCCTTCGAAA+AGG | - | chr8.3:78888593-78888612 | None:intergenic | 40.0% | |
| GCCTATCGACAACCTAATAA+AGG | - | chr8.3:78886551-78886570 | None:intergenic | 40.0% | |
| GGTGTTAAAAGGCAGCAAAT+CGG | + | chr8.3:78886865-78886884 | MS.gene35251:CDS | 40.0% | |
| GTTGCAAGTTTAGTAAGGAC+AGG | + | chr8.3:78887121-78887140 | MS.gene35251:CDS | 40.0% | |
| TCCCTTCTTCCCTGAAAATA+CGG | - | chr8.3:78886830-78886849 | None:intergenic | 40.0% | |
| TGGTAAACCATTAGTACAGC+TGG | + | chr8.3:78888481-78888500 | MS.gene35251:CDS | 40.0% | |
| TTCGAAGGAAGATCAGAAGA+GGG | + | chr8.3:78888594-78888613 | MS.gene35251:CDS | 40.0% | |
| TTTCGAAGGAAGATCAGAAG+AGG | + | chr8.3:78888593-78888612 | MS.gene35251:CDS | 40.0% | |
| ! | GCCTTTATTAGGTTGTCGAT+AGG | + | chr8.3:78886547-78886566 | MS.gene35251:CDS | 40.0% |
| ! | TGGTCCAAATATGTTGCTTG+AGG | + | chr8.3:78887276-78887295 | MS.gene35251:intron | 40.0% |
| !! | CTAAGCTTGCTGCATGATAT+AGG | + | chr8.3:78887314-78887333 | MS.gene35251:intron | 40.0% |
| !! | TCCATCTTCAGGTTGTGATT+GGG | + | chr8.3:78888097-78888116 | MS.gene35251:CDS | 40.0% |
| !! | TTAAAAGCGTTGTTAGCTCC+TGG | + | chr8.3:78886769-78886788 | MS.gene35251:CDS | 40.0% |
| !! | TTCCATCTTCAGGTTGTGAT+TGG | + | chr8.3:78888096-78888115 | MS.gene35251:CDS | 40.0% |
| AACTTCGGCAGAGGTTATCA+AGG | - | chr8.3:78886698-78886717 | None:intergenic | 45.0% | |
| AAGGGATCTCATTGTGGAGT+TGG | + | chr8.3:78886844-78886863 | MS.gene35251:CDS | 45.0% | |
| ACCAGATGTGACACTCACAA+TGG | + | chr8.3:78887677-78887696 | MS.gene35251:intron | 45.0% | |
| ACCATAACACTCCATGTCCT+TGG | + | chr8.3:78887256-78887275 | MS.gene35251:intron | 45.0% | |
| ACCCAATCACAACCTGAAGA+TGG | - | chr8.3:78888101-78888120 | None:intergenic | 45.0% | |
| ACTGGAATTGAACCGAACAC+TGG | + | chr8.3:78886589-78886608 | MS.gene35251:CDS | 45.0% | |
| ACTTCGGCAGAGGTTATCAA+GGG | - | chr8.3:78886697-78886716 | None:intergenic | 45.0% | |
| AGAAGATTGCCTCCATCTTG+AGG | - | chr8.3:78888272-78888291 | None:intergenic | 45.0% | |
| AGCTGTAGAGTTCAAGGTGA+AGG | + | chr8.3:78888452-78888471 | MS.gene35251:CDS | 45.0% | |
| ATACCTAGTCCCCAAAGTAG+CGG | + | chr8.3:78888386-78888405 | MS.gene35251:CDS | 45.0% | |
| ATCACGTATAACTTCGGCAG+AGG | - | chr8.3:78886707-78886726 | None:intergenic | 45.0% | |
| ATGACAAACCCTCCAACAAC+CGG | - | chr8.3:78888431-78888450 | None:intergenic | 45.0% | |
| ATGTGACACTCACAATGGGA+CGG | + | chr8.3:78887682-78887701 | MS.gene35251:intron | 45.0% | |
| ATTGCCTCCATCTTGAGGTT+CGG | - | chr8.3:78888267-78888286 | None:intergenic | 45.0% | |
| CATGAGAACTGTGGCTTCTA+CGG | + | chr8.3:78888355-78888374 | MS.gene35251:CDS | 45.0% | |
| CCAGATGTGACACTCACAAT+GGG | + | chr8.3:78887678-78887697 | MS.gene35251:intron | 45.0% | |
| CGACAACCTAATAAAGGCCT+GGG | - | chr8.3:78886545-78886564 | None:intergenic | 45.0% | |
| CTGATCCTAGATACGTGTTC+CGG | + | chr8.3:78887028-78887047 | MS.gene35251:CDS | 45.0% | |
| CTTCTATCCGAACCTCAAGA+TGG | + | chr8.3:78888257-78888276 | MS.gene35251:CDS | 45.0% | |
| CTTGAGGTTCGGATAGAAGA+TGG | - | chr8.3:78888256-78888275 | None:intergenic | 45.0% | |
| GAACAATCAACCAAGCTCCT+GGG | - | chr8.3:78888136-78888155 | None:intergenic | 45.0% | |
| GAACCGAACACTGGAAAATC+TGG | + | chr8.3:78886598-78886617 | MS.gene35251:CDS | 45.0% | |
| GACAACCTAATAAAGGCCTG+GGG | - | chr8.3:78886544-78886563 | None:intergenic | 45.0% | |
| GCATTAGAGATTACTCCCTC+TGG | + | chr8.3:78887379-78887398 | MS.gene35251:intron | 45.0% | |
| GGAAGATCAGAAGAGGGATT+CGG | + | chr8.3:78888600-78888619 | MS.gene35251:CDS | 45.0% | |
| GGCAAGAACAAACAGGAGAA+TGG | + | chr8.3:78886964-78886983 | MS.gene35251:CDS | 45.0% | |
| GTCATGAGCTGTAGAGTTCA+AGG | + | chr8.3:78888446-78888465 | MS.gene35251:CDS | 45.0% | |
| GTTTGTGAGATACGACTTCG+AGG | + | chr8.3:78886646-78886665 | MS.gene35251:CDS | 45.0% | |
| TCAAACCGGAACACGTATCT+AGG | - | chr8.3:78887036-78887055 | None:intergenic | 45.0% | |
| TCGACAACCTAATAAAGGCC+TGG | - | chr8.3:78886546-78886565 | None:intergenic | 45.0% | |
| TTCAAATGCAATTCGGCACC+TGG | - | chr8.3:78886994-78887013 | None:intergenic | 45.0% | |
| TTTCTGACTTAGAATCCGGG+AGG | + | chr8.3:78887991-78888010 | MS.gene35251:CDS | 45.0% | |
| ! | ACCAAAGTCTCCGCTACTTT+GGG | - | chr8.3:78888399-78888418 | None:intergenic | 45.0% |
| ! | ACCAAGGACATGGAGTGTTA+TGG | - | chr8.3:78887260-78887279 | None:intergenic | 45.0% |
| ! | CTACTTTGGGGACTAGGTAT+TGG | - | chr8.3:78888386-78888405 | None:intergenic | 45.0% |
| ! | GAAAAACTCGCCACCCTTTT+CGG | - | chr8.3:78888318-78888337 | None:intergenic | 45.0% |
| ! | GGGACTGATGATGTTTGAAC+AGG | - | chr8.3:78886676-78886695 | None:intergenic | 45.0% |
| ! | TCTCTGGGTTTGAGAAGTAC+TGG | + | chr8.3:78886571-78886590 | MS.gene35251:CDS | 45.0% |
| ! | TGGAGATCGCCGTATTTTCA+GGG | + | chr8.3:78886818-78886837 | MS.gene35251:CDS | 45.0% |
| ! | TTGACTCGTTGAGCACATAC+TGG | + | chr8.3:78887952-78887971 | MS.gene35251:CDS | 45.0% |
| ! | TTGGAGATCGCCGTATTTTC+AGG | + | chr8.3:78886817-78886836 | MS.gene35251:CDS | 45.0% |
| !! | GCCGTATTTTCAGGGAAGAA+GGG | + | chr8.3:78886826-78886845 | MS.gene35251:CDS | 45.0% |
| AATCAACCAAGCTCCTGGGT+TGG | - | chr8.3:78888132-78888151 | None:intergenic | 50.0% | |
| AATGCTGAGGTCAACAGCTG+CGG | - | chr8.3:78888558-78888577 | None:intergenic | 50.0% | |
| AGCTGTTGACCTCAGCATTG+AGG | + | chr8.3:78888559-78888578 | MS.gene35251:CDS | 50.0% | |
| AGGTTGTCGATAGGCTCTCT+GGG | + | chr8.3:78886556-78886575 | MS.gene35251:CDS | 50.0% | |
| ATTGTTCGTCCCGATGTGGT+TGG | + | chr8.3:78888149-78888168 | MS.gene35251:CDS | 50.0% | |
| CACCAAAGTCTCCGCTACTT+TGG | - | chr8.3:78888400-78888419 | None:intergenic | 50.0% | |
| CATGCTTCAAGCTTTCCCCA+CGG | - | chr8.3:78888194-78888213 | None:intergenic | 50.0% | |
| CCCATTGTGAGTGTCACATC+TGG | - | chr8.3:78887681-78887700 | None:intergenic | 50.0% | |
| CCTTGCAGCAGAACTATCTG+AGG | - | chr8.3:78887078-78887097 | None:intergenic | 50.0% | |
| CGAACAATCAACCAAGCTCC+TGG | - | chr8.3:78888137-78888156 | None:intergenic | 50.0% | |
| CGCAATGCCAGCTGTACTAA+TGG | - | chr8.3:78888491-78888510 | None:intergenic | 50.0% | |
| CTATCCGAACCTCAAGATGG+AGG | + | chr8.3:78888260-78888279 | MS.gene35251:CDS | 50.0% | |
| CTCGGATCTACCAACCACAT+CGG | - | chr8.3:78888162-78888181 | None:intergenic | 50.0% | |
| CTCGTTGAGCACATACTGGT+CGG | + | chr8.3:78887956-78887975 | MS.gene35251:CDS | 50.0% | |
| CTTCGGCAGAGGTTATCAAG+GGG | - | chr8.3:78886696-78886715 | None:intergenic | 50.0% | |
| GAGAGAGAGAAAAGGGTGGA+AGG | + | chr8.3:78888013-78888032 | MS.gene35251:CDS | 50.0% | |
| GCGATCTCCAAACATGCATG+AGG | - | chr8.3:78886808-78886827 | None:intergenic | 50.0% | |
| GGGAAGAAGGGATCTCATTG+TGG | + | chr8.3:78886838-78886857 | MS.gene35251:CDS | 50.0% | |
| GTTCAAGGTGAAGGAAAGCG+TGG | + | chr8.3:78888461-78888480 | MS.gene35251:CDS | 50.0% | |
| GTTGATTGTTCGTCCCGATG+TGG | + | chr8.3:78888145-78888164 | MS.gene35251:CDS | 50.0% | |
| GTTTCCCTTCACCCCATTCA+GGG | - | chr8.3:78886912-78886931 | None:intergenic | 50.0% | |
| TAGGTTGTCGATAGGCTCTC+TGG | + | chr8.3:78886555-78886574 | MS.gene35251:CDS | 50.0% | |
| TCGGATCTACCAACCACATC+GGG | - | chr8.3:78888161-78888180 | None:intergenic | 50.0% | |
| TCGTTGAGCACATACTGGTC+GGG | + | chr8.3:78887957-78887976 | MS.gene35251:CDS | 50.0% | |
| TGGATCCCCAGGCCTTTATT+AGG | + | chr8.3:78886536-78886555 | MS.gene35251:CDS | 50.0% | |
| ! | AAATGCAGGTTGGCCCTGAA+TGG | + | chr8.3:78886896-78886915 | MS.gene35251:CDS | 50.0% |
| ! | AATGCAGGTTGGCCCTGAAT+GGG | + | chr8.3:78886897-78886916 | MS.gene35251:CDS | 50.0% |
| ! | AGACTTTGGTGCACTGAGTC+CGG | + | chr8.3:78888409-78888428 | MS.gene35251:CDS | 50.0% |
| ! | AGGCATGCAAGCCTTTTCGA+AGG | + | chr8.3:78888579-78888598 | MS.gene35251:CDS | 50.0% |
| ! | CCAAAGTCTCCGCTACTTTG+GGG | - | chr8.3:78888398-78888417 | None:intergenic | 50.0% |
| ! | CCTCAGATAGTTCTGCTGCA+AGG | + | chr8.3:78887075-78887094 | MS.gene35251:CDS | 50.0% |
| ! | CGGAACACGTATCTAGGATC+AGG | - | chr8.3:78887030-78887049 | None:intergenic | 50.0% |
| !! | CGCCGTATTTTCAGGGAAGA+AGG | + | chr8.3:78886825-78886844 | MS.gene35251:CDS | 50.0% |
| CAAGATCCAACCCAGGAGCT+TGG | + | chr8.3:78888123-78888142 | MS.gene35251:CDS | 55.0% | |
| CACTGAGTCCGGTTGTTGGA+GGG | + | chr8.3:78888420-78888439 | MS.gene35251:CDS | 55.0% | |
| CCGGGAGGAGAGAGAGAAAA+GGG | + | chr8.3:78888006-78888025 | MS.gene35251:CDS | 55.0% | |
| CGTGGGGAAAGCTTGAAGCA+TGG | + | chr8.3:78888192-78888211 | MS.gene35251:CDS | 55.0% | |
| GACACTCACAATGGGACGGA+GGG | + | chr8.3:78887686-78887705 | MS.gene35251:intron | 55.0% | |
| GCTTGCATGCCTCAATGCTG+AGG | - | chr8.3:78888571-78888590 | None:intergenic | 55.0% | |
| GGAGGAGAGAGAGAAAAGGG+TGG | + | chr8.3:78888009-78888028 | MS.gene35251:CDS | 55.0% | |
| GGAGGATGCTGCCATCTTCA+TGG | + | chr8.3:78888526-78888545 | MS.gene35251:CDS | 55.0% | |
| GGTTTCCCTTCACCCCATTC+AGG | - | chr8.3:78886913-78886932 | None:intergenic | 55.0% | |
| TCCGGGAGGAGAGAGAGAAA+AGG | + | chr8.3:78888005-78888024 | MS.gene35251:CDS | 55.0% | |
| TGACACTCACAATGGGACGG+AGG | + | chr8.3:78887685-78887704 | MS.gene35251:intron | 55.0% | |
| TGCGGCAAGTGCCATGAAGA+TGG | - | chr8.3:78888540-78888559 | None:intergenic | 55.0% | |
| TGGGTTGCAAGATCCAACCC+AGG | + | chr8.3:78888116-78888135 | MS.gene35251:CDS | 55.0% | |
| TTGGCCCTGAATGGGGTGAA+GGG | + | chr8.3:78886905-78886924 | MS.gene35251:CDS | 55.0% | |
| ! | ATGCAGGTTGGCCCTGAATG+GGG | + | chr8.3:78886898-78886917 | MS.gene35251:CDS | 55.0% |
| ! | CCCCAAAGTAGCGGAGACTT+TGG | + | chr8.3:78888395-78888414 | MS.gene35251:CDS | 55.0% |
| ! | CCCTTTTCTCTCTCTCCTCC+CGG | - | chr8.3:78888009-78888028 | None:intergenic | 55.0% |
| ! | TCTCCGCTACTTTGGGGACT+AGG | - | chr8.3:78888392-78888411 | None:intergenic | 55.0% |
| !! | TGGTTGGTAGATCCGAGAGC+TGG | + | chr8.3:78888165-78888184 | MS.gene35251:CDS | 55.0% |
| ATTGCGACACGTGACGTGCG+TGG | + | chr8.3:78888505-78888524 | MS.gene35251:CDS | 60.0% | |
| GCACTGAGTCCGGTTGTTGG+AGG | + | chr8.3:78888419-78888438 | MS.gene35251:CDS | 60.0% | |
| GGTGCACTGAGTCCGGTTGT+TGG | + | chr8.3:78888416-78888435 | MS.gene35251:CDS | 60.0% | |
| GTTGGCCCTGAATGGGGTGA+AGG | + | chr8.3:78886904-78886923 | MS.gene35251:CDS | 60.0% | |
| ATCCGAGAGCTGGCAGCCGT+GGG | + | chr8.3:78888175-78888194 | MS.gene35251:CDS | 65.0% | |
| CTTGAAGCATGGCGCGAGCG+TGG | + | chr8.3:78888203-78888222 | MS.gene35251:CDS | 65.0% | |
| GATCCGAGAGCTGGCAGCCG+TGG | + | chr8.3:78888174-78888193 | MS.gene35251:CDS | 70.0% | |
| GCGACACGTGACGTGCGTGG+AGG | + | chr8.3:78888508-78888527 | MS.gene35251:CDS | 70.0% | |
| TCCCCACGGCTGCCAGCTCT+CGG | - | chr8.3:78888180-78888199 | None:intergenic | 70.0% | |
| TCCGAGAGCTGGCAGCCGTG+GGG | + | chr8.3:78888176-78888195 | MS.gene35251:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 78886535 | 78888634 | 78886535 | ID=MS.gene35251 |
| chr8.3 | mRNA | 78886535 | 78888634 | 78886535 | ID=MS.gene35251.t1;Parent=MS.gene35251 |
| chr8.3 | exon | 78886535 | 78887142 | 78886535 | ID=MS.gene35251.t1.exon1;Parent=MS.gene35251.t1 |
| chr8.3 | CDS | 78886535 | 78887142 | 78886535 | ID=cds.MS.gene35251.t1;Parent=MS.gene35251.t1 |
| chr8.3 | exon | 78887941 | 78888634 | 78887941 | ID=MS.gene35251.t1.exon2;Parent=MS.gene35251.t1 |
| chr8.3 | CDS | 78887941 | 78888634 | 78887941 | ID=cds.MS.gene35251.t1;Parent=MS.gene35251.t1 |
| Gene Sequence |
| Protein sequence |
