Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35493.t1 | RHN72409.1 | 44.5 | 191 | 40 | 2 | 1 | 127 | 1 | 189 | 4.00E-24 | 121.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35493.t1 | A0A396J316 | 44.5 | 191 | 40 | 2 | 1 | 127 | 1 | 189 | 2.9e-24 | 121.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050437 | MS.gene35493 | 0.82303 | 1.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35493.t1 | MTR_2g021540 | 85.484 | 62 | 9 | 0 | 66 | 127 | 70 | 131 | 2.43e-30 | 109 |
| MS.gene35493.t1 | MTR_2g021510 | 39.873 | 158 | 57 | 5 | 4 | 127 | 13 | 166 | 2.85e-25 | 97.4 |
| MS.gene35493.t1 | MTR_2g021600 | 39.429 | 175 | 58 | 7 | 1 | 127 | 1 | 175 | 2.56e-22 | 91.3 |
| MS.gene35493.t1 | MTR_2g021450 | 36.986 | 146 | 67 | 4 | 3 | 125 | 2 | 145 | 1.86e-18 | 78.6 |
| MS.gene35493.t1 | MTR_2g020500 | 56.522 | 69 | 27 | 2 | 3 | 68 | 13 | 81 | 1.97e-17 | 78.2 |
| MS.gene35493.t1 | MTR_2g021630 | 36.646 | 161 | 58 | 5 | 3 | 127 | 2 | 154 | 3.81e-17 | 75.9 |
| MS.gene35493.t1 | MTR_2g021480 | 55.882 | 68 | 27 | 2 | 1 | 65 | 11 | 78 | 5.45e-16 | 74.7 |
| MS.gene35493.t1 | MTR_2g021660 | 53.333 | 60 | 26 | 1 | 1 | 58 | 1 | 60 | 1.61e-14 | 68.9 |
| MS.gene35493.t1 | MTR_3g087310 | 59.649 | 57 | 21 | 1 | 3 | 57 | 2 | 58 | 2.33e-14 | 65.9 |
| MS.gene35493.t1 | MTR_2g021570 | 50.000 | 72 | 29 | 3 | 12 | 80 | 33 | 100 | 6.63e-14 | 65.5 |
| MS.gene35493.t1 | MTR_2g021590 | 56.923 | 65 | 25 | 2 | 1 | 62 | 4 | 68 | 1.28e-13 | 67.8 |
| MS.gene35493.t1 | MTR_2g021560 | 48.485 | 66 | 31 | 2 | 3 | 65 | 2 | 67 | 5.70e-13 | 66.2 |
| MS.gene35493.t1 | MTR_2g021530 | 46.753 | 77 | 38 | 2 | 7 | 80 | 2 | 78 | 8.74e-13 | 63.2 |
| MS.gene35493.t1 | MTR_0485s0020 | 31.977 | 172 | 66 | 4 | 6 | 126 | 5 | 176 | 1.91e-12 | 63.5 |
| MS.gene35493.t1 | MTR_2g021640 | 68.085 | 47 | 12 | 2 | 8 | 51 | 37 | 83 | 3.38e-12 | 63.2 |
| MS.gene35493.t1 | MTR_5g048270 | 58.824 | 51 | 19 | 1 | 7 | 55 | 2 | 52 | 4.48e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTCCTTACAATTCTTCT+AGG | 0.251423 | 2.4:+65737839 | MS.gene35493:CDS |
| TGCTAAGGCAGATCAAATTT+TGG | 0.261207 | 2.4:+65736867 | MS.gene35493:CDS |
| TCGGTTTCTGAAAGGGAAAT+TGG | 0.276146 | 2.4:+65736897 | MS.gene35493:CDS |
| TTTATCTCAAATGCACATTC+TGG | 0.290745 | 2.4:+65736933 | MS.gene35493:CDS |
| GAAAGACATTTGTGCTTTAG+AGG | 0.316403 | 2.4:+65737867 | MS.gene35493:CDS |
| TCAAGAACTGCTGGTTCTAT+TGG | 0.318107 | 2.4:+65738134 | MS.gene35493:CDS |
| GAGTATTATCAATTCTATAA+AGG | 0.360878 | 2.4:-65736417 | None:intergenic |
| ATTTCGATCAACAGCTCCTC+CGG | 0.414271 | 2.4:-65736394 | None:intergenic |
| AGGAAACGGTATATAACAAT+TGG | 0.422018 | 2.4:+65737887 | MS.gene35493:CDS |
| GGTTCTATTGGAGGGGATGT+TGG | 0.435884 | 2.4:+65738146 | MS.gene35493:CDS |
| CCAGACCTTTGCATATAGAA+AGG | 0.444740 | 2.4:-65736530 | None:intergenic |
| GTGTCTCAAAAGCTTTCTGC+AGG | 0.459684 | 2.4:+65736969 | MS.gene35493:CDS |
| CATTTGTGCTTTAGAGGAAA+CGG | 0.469365 | 2.4:+65737873 | MS.gene35493:CDS |
| GGATGTTGGTGATTGAGAAT+AGG | 0.470879 | 2.4:+65738160 | MS.gene35493:CDS |
| TTGTTGATCATGAATTCGTT+AGG | 0.483387 | 2.4:+65736479 | MS.gene35493:CDS |
| AGAGAGACAATTGATGATGA+TGG | 0.486004 | 2.4:+65736840 | MS.gene35493:CDS |
| CTTACAATTCTTCTAGGTGG+TGG | 0.486227 | 2.4:+65737845 | MS.gene35493:CDS |
| CACCACCTAGAAGAATTGTA+AGG | 0.491127 | 2.4:-65737844 | None:intergenic |
| AGAACTGCTGGTTCTATTGG+AGG | 0.493271 | 2.4:+65738137 | MS.gene35493:CDS |
| TGGATGTTCGGTTTCTGAAA+GGG | 0.496222 | 2.4:+65736890 | MS.gene35493:CDS |
| TTGATAATACTCTGCAATTG+AGG | 0.502997 | 2.4:+65736428 | MS.gene35493:CDS |
| CAGACCTTTGCATATAGAAA+GGG | 0.503695 | 2.4:-65736529 | None:intergenic |
| ATAGAACCAGCAGTTCTTGA+AGG | 0.511915 | 2.4:-65738131 | None:intergenic |
| GGCGATGACGGCGGAAGAGA+CGG | 0.517218 | 2.4:+65736348 | None:intergenic |
| TGAGGTGCGTTTGCAAGTTG+TGG | 0.522625 | 2.4:+65736446 | MS.gene35493:CDS |
| TAACCTCCTTCAAGAACTGC+TGG | 0.523112 | 2.4:+65738125 | MS.gene35493:CDS |
| GTCCTTACAATTCTTCTAGG+TGG | 0.524290 | 2.4:+65737842 | MS.gene35493:CDS |
| GAAGCTCTTATCGAGATTCA+CGG | 0.527926 | 2.4:+65736501 | MS.gene35493:CDS |
| TATCTTGCATAGGGCAGAGT+GGG | 0.529559 | 2.4:+65737807 | MS.gene35493:CDS |
| GTGGATGTTCGGTTTCTGAA+AGG | 0.533998 | 2.4:+65736889 | MS.gene35493:CDS |
| TTTCGATCAACAGCTCCTCC+GGG | 0.539714 | 2.4:-65736393 | None:intergenic |
| GACGGCGGAGTCACCGATCT+CGG | 0.540182 | 2.4:+65736366 | MS.gene35493:CDS |
| GTCACCGATCTCGGTAGTCC+CGG | 0.540650 | 2.4:+65736375 | MS.gene35493:CDS |
| TAGGAGATTGTTTGTGTGGG+AGG | 0.542714 | 2.4:+65738101 | MS.gene35493:intron |
| GAACTGCTGGTTCTATTGGA+GGG | 0.545468 | 2.4:+65738138 | MS.gene35493:CDS |
| GGCGTAGGAGATTGTTTGTG+TGG | 0.550546 | 2.4:+65738097 | MS.gene35493:intron |
| ATGTAGAGTATATCTTGCAT+AGG | 0.555458 | 2.4:+65737797 | MS.gene35493:CDS |
| GATGATGATGGCAGTTGCTA+AGG | 0.561376 | 2.4:+65736852 | MS.gene35493:CDS |
| AACTGCTGGTTCTATTGGAG+GGG | 0.572166 | 2.4:+65738139 | MS.gene35493:CDS |
| TGTAGAGTATATCTTGCATA+GGG | 0.575064 | 2.4:+65737798 | MS.gene35493:CDS |
| GCGTAGGAGATTGTTTGTGT+GGG | 0.577296 | 2.4:+65738098 | MS.gene35493:intron |
| CATTCCCTTTCTATATGCAA+AGG | 0.577837 | 2.4:+65736525 | MS.gene35493:CDS |
| TCCTCCGGGACTACCGAGAT+CGG | 0.585220 | 2.4:-65736379 | None:intergenic |
| ATCTCAAATGCACATTCTGG+AGG | 0.586032 | 2.4:+65736936 | MS.gene35493:CDS |
| GAACCAGCAGTTCTTGAAGG+AGG | 0.601638 | 2.4:-65738128 | None:intergenic |
| TATCGAAGGAAGTTCTTGTG+AGG | 0.624082 | 2.4:+65737770 | MS.gene35493:CDS |
| GAATGAATAGTCATTATCGA+AGG | 0.639862 | 2.4:+65737756 | MS.gene35493:intron |
| AATTCAGCAACAACACAACC+AGG | 0.642169 | 2.4:-65738855 | None:intergenic |
| CCTAACTACGGCGATGACGG+CGG | 0.643219 | 2.4:+65736339 | None:intergenic |
| ACCGATCTCGGTAGTCCCGG+AGG | 0.677550 | 2.4:+65736378 | MS.gene35493:CDS |
| GATGACGGCGGAAGAGACGG+CGG | 0.679894 | 2.4:+65736351 | None:intergenic |
| ATCTTGCATAGGGCAGAGTG+GGG | 0.689782 | 2.4:+65737808 | MS.gene35493:CDS |
| ATATCTTGCATAGGGCAGAG+TGG | 0.715647 | 2.4:+65737806 | MS.gene35493:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTGATTATTAACTAATA+TGG | + | chr2.4:65737079-65737098 | MS.gene35493:intron | 10.0% |
| !! | AAAACATTATTATAAGTAAG+GGG | + | chr2.4:65737395-65737414 | MS.gene35493:intron | 15.0% |
| !! | GAAAACATTATTATAAGTAA+GGG | + | chr2.4:65737394-65737413 | MS.gene35493:intron | 15.0% |
| !! | TGAAAACATTATTATAAGTA+AGG | + | chr2.4:65737393-65737412 | MS.gene35493:intron | 15.0% |
| !! | TTGAAATATATAGAAAACAT+AGG | - | chr2.4:65737302-65737321 | None:intergenic | 15.0% |
| !!! | TCTCTTTAAAAAAAAATAGA+AGG | - | chr2.4:65737578-65737597 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAAAGAGAAAAC+AGG | + | chr2.4:65737582-65737601 | MS.gene35493:intron | 15.0% |
| !! | GAGTATTATCAATTCTATAA+AGG | - | chr2.4:65736420-65736439 | None:intergenic | 20.0% |
| !! | TTGTTAAATGATTATGTTTC+TGG | + | chr2.4:65737328-65737347 | MS.gene35493:intron | 20.0% |
| !!! | AAAAAGTGTTAAGATATATG+TGG | + | chr2.4:65738199-65738218 | MS.gene35493:intron | 20.0% |
| ! | ACATATTTGAAAGACTAAGT+TGG | + | chr2.4:65737462-65737481 | MS.gene35493:intron | 25.0% |
| ! | AGACAATAATCAATACTAAG+AGG | - | chr2.4:65737022-65737041 | None:intergenic | 25.0% |
| ! | ATCAAGAAGAGAAAGTTATA+TGG | - | chr2.4:65737261-65737280 | None:intergenic | 25.0% |
| ! | CAAAATCACAATGCAAAAAA+AGG | - | chr2.4:65738378-65738397 | None:intergenic | 25.0% |
| ! | CATATTTGAAAGACTAAGTT+GGG | + | chr2.4:65737463-65737482 | MS.gene35493:intron | 25.0% |
| ! | CGTAAATAATTCACAAAAAG+AGG | - | chr2.4:65737989-65738008 | None:intergenic | 25.0% |
| ! | CTTAAATGGTTGTAAATGAA+TGG | + | chr2.4:65737190-65737209 | MS.gene35493:intron | 25.0% |
| ! | GAGATAGTTTCTTACTTAAA+TGG | + | chr2.4:65737176-65737195 | MS.gene35493:intron | 25.0% |
| ! | GGAAAAATTGGAAAAAATGA+GGG | + | chr2.4:65737484-65737503 | MS.gene35493:intron | 25.0% |
| ! | GGCTATAAATAATAATGCTA+AGG | + | chr2.4:65738587-65738606 | MS.gene35493:intron | 25.0% |
| !! | CAAAGTTAATAACGTTTTCT+TGG | + | chr2.4:65738238-65738257 | MS.gene35493:intron | 25.0% |
| !! | TGATTTGGCATGTAATATTA+TGG | + | chr2.4:65738523-65738542 | MS.gene35493:intron | 25.0% |
| !! | TGTGATAATTTTTGCAAATG+AGG | + | chr2.4:65738566-65738585 | MS.gene35493:intron | 25.0% |
| !!! | TAATAATGCTAAGGTTTTGT+TGG | + | chr2.4:65738596-65738615 | MS.gene35493:intron | 25.0% |
| !!! | TCATGCTTTTTAGCTTTTAT+GGG | + | chr2.4:65738723-65738742 | MS.gene35493:intron | 25.0% |
| !!! | TTTTTAGAATGGTGAGAAAT+GGG | + | chr2.4:65737923-65737942 | MS.gene35493:intron | 25.0% |
| AAAAAATAGAAGGCCTTCAA+TGG | - | chr2.4:65737568-65737587 | None:intergenic | 30.0% | |
| AAAAAGTAAGAAAATCCGGA+AGG | + | chr2.4:65738491-65738510 | MS.gene35493:intron | 30.0% | |
| AAAAGTAAGAAAATCCGGAA+GGG | + | chr2.4:65738492-65738511 | MS.gene35493:intron | 30.0% | |
| AATCCCAACAGAAAGTAATT+TGG | + | chr2.4:65738278-65738297 | MS.gene35493:intron | 30.0% | |
| ACACCAAATTACTTTCTGTT+GGG | - | chr2.4:65738284-65738303 | None:intergenic | 30.0% | |
| AGGAAACGGTATATAACAAT+TGG | + | chr2.4:65737887-65737906 | MS.gene35493:CDS | 30.0% | |
| AGGGAAAAAGTAAGAAAATC+CGG | + | chr2.4:65738487-65738506 | MS.gene35493:intron | 30.0% | |
| ATCACTATTACTCTTCATTG+TGG | - | chr2.4:65737132-65737151 | None:intergenic | 30.0% | |
| ATGTAGAGTATATCTTGCAT+AGG | + | chr2.4:65737797-65737816 | MS.gene35493:CDS | 30.0% | |
| CTTCAATGGTATTAAAAGCT+AGG | - | chr2.4:65737554-65737573 | None:intergenic | 30.0% | |
| GAATGAATAGTCATTATCGA+AGG | + | chr2.4:65737756-65737775 | MS.gene35493:intron | 30.0% | |
| GGGAAAAATTGGAAAAAATG+AGG | + | chr2.4:65737483-65737502 | MS.gene35493:intron | 30.0% | |
| TAACTTTCTCTTCTTGATCT+TGG | + | chr2.4:65737263-65737282 | MS.gene35493:intron | 30.0% | |
| TACACCAAATTACTTTCTGT+TGG | - | chr2.4:65738285-65738304 | None:intergenic | 30.0% | |
| TAGAACAGGACAAACAAATT+TGG | - | chr2.4:65738457-65738476 | None:intergenic | 30.0% | |
| TGTAGAGTATATCTTGCATA+GGG | + | chr2.4:65737798-65737817 | MS.gene35493:CDS | 30.0% | |
| TGTGTACAATTGAAAGAAGT+AGG | + | chr2.4:65737422-65737441 | MS.gene35493:intron | 30.0% | |
| TTGTTGATCATGAATTCGTT+AGG | + | chr2.4:65736479-65736498 | MS.gene35493:CDS | 30.0% | |
| TTTAGTCCTTGATGTTGATA+GGG | + | chr2.4:65737688-65737707 | MS.gene35493:intron | 30.0% | |
| TTTATCTCAAATGCACATTC+TGG | + | chr2.4:65736933-65736952 | MS.gene35493:CDS | 30.0% | |
| ! | AAGACTAAGTTGGGAAAAAT+TGG | + | chr2.4:65737472-65737491 | MS.gene35493:intron | 30.0% |
| ! | TCTGTTTTATGAATGGTCTT+GGG | + | chr2.4:65738674-65738693 | MS.gene35493:intron | 30.0% |
| ! | TGAATAGTGGAGGATTTAAT+TGG | - | chr2.4:65737655-65737674 | None:intergenic | 30.0% |
| ! | TTGATAATACTCTGCAATTG+AGG | + | chr2.4:65736428-65736447 | MS.gene35493:CDS | 30.0% |
| ! | TTTTAGTCCTTGATGTTGAT+AGG | + | chr2.4:65737687-65737706 | MS.gene35493:intron | 30.0% |
| !! | ATCAAATTTTGGTGGATGTT+CGG | + | chr2.4:65736878-65736897 | MS.gene35493:CDS | 30.0% |
| !! | CAGAAAGTAATTTGGTGTAT+CGG | + | chr2.4:65738286-65738305 | MS.gene35493:intron | 30.0% |
| !! | CTAGCTTTTAATACCATTGA+AGG | + | chr2.4:65737552-65737571 | MS.gene35493:intron | 30.0% |
| !!! | AATTGGTTTTTTCCCTGTTA+GGG | - | chr2.4:65737638-65737657 | None:intergenic | 30.0% |
| !!! | CATGCTTTTTAGCTTTTATG+GGG | + | chr2.4:65738724-65738743 | MS.gene35493:intron | 30.0% |
| !!! | GTCATGCTTTTTAGCTTTTA+TGG | + | chr2.4:65738722-65738741 | MS.gene35493:intron | 30.0% |
| !!! | GTGATTTTGCCTTTAAAGTA+TGG | + | chr2.4:65738389-65738408 | MS.gene35493:intron | 30.0% |
| !!! | GTTTTTAGAATGGTGAGAAA+TGG | + | chr2.4:65737922-65737941 | MS.gene35493:intron | 30.0% |
| !!! | TAATTGGTTTTTTCCCTGTT+AGG | - | chr2.4:65737639-65737658 | None:intergenic | 30.0% |
| !!! | TTTTAGAATGGTGAGAAATG+GGG | + | chr2.4:65737924-65737943 | MS.gene35493:intron | 30.0% |
| ACCAAGCTAACTAAACACTT+TGG | - | chr2.4:65738416-65738435 | None:intergenic | 35.0% | |
| ACCATTCATAAAACAGACAC+GGG | - | chr2.4:65738671-65738690 | None:intergenic | 35.0% | |
| ACGACTAACATAGTGAATAG+TGG | - | chr2.4:65737668-65737687 | None:intergenic | 35.0% | |
| ACTAACATAGTGAATAGTGG+AGG | - | chr2.4:65737665-65737684 | None:intergenic | 35.0% | |
| ACTAATAAGCAAACAATCCC+TGG | - | chr2.4:65738702-65738721 | None:intergenic | 35.0% | |
| ATACTCAACTGTCATCAGAA+TGG | - | chr2.4:65737356-65737375 | None:intergenic | 35.0% | |
| ATATTGCAAAACGAGGGAAA+TGG | + | chr2.4:65737508-65737527 | MS.gene35493:intron | 35.0% | |
| ATCTCTCCATAAACTAGTCA+AGG | - | chr2.4:65737950-65737969 | None:intergenic | 35.0% | |
| ATGCTATAGTGCAAGATTAG+AGG | + | chr2.4:65738037-65738056 | MS.gene35493:intron | 35.0% | |
| CACTTTGGTCCATACTTTAA+AGG | - | chr2.4:65738401-65738420 | None:intergenic | 35.0% | |
| CAGACCTTTGCATATAGAAA+GGG | - | chr2.4:65736532-65736551 | None:intergenic | 35.0% | |
| CATTCCCTTTCTATATGCAA+AGG | + | chr2.4:65736525-65736544 | MS.gene35493:CDS | 35.0% | |
| CTAATAAGCAAACAATCCCT+GGG | - | chr2.4:65738701-65738720 | None:intergenic | 35.0% | |
| CTTGTCCTTACAATTCTTCT+AGG | + | chr2.4:65737839-65737858 | MS.gene35493:CDS | 35.0% | |
| CTTTCTATATGCAAAGGTCT+GGG | + | chr2.4:65736531-65736550 | MS.gene35493:intron | 35.0% | |
| GAAAGACATTTGTGCTTTAG+AGG | + | chr2.4:65737867-65737886 | MS.gene35493:CDS | 35.0% | |
| GAAGAAGAAGATGATGAAGA+AGG | + | chr2.4:65736622-65736641 | MS.gene35493:intron | 35.0% | |
| GACCATTCATAAAACAGACA+CGG | - | chr2.4:65738672-65738691 | None:intergenic | 35.0% | |
| GTTATTAACTTTGACAGTGC+TGG | - | chr2.4:65738231-65738250 | None:intergenic | 35.0% | |
| TAATGTCCCTATCAACATCA+AGG | - | chr2.4:65737697-65737716 | None:intergenic | 35.0% | |
| TACTCAACTGTCATCAGAAT+GGG | - | chr2.4:65737355-65737374 | None:intergenic | 35.0% | |
| TATTGCAAAACGAGGGAAAT+GGG | + | chr2.4:65737509-65737528 | MS.gene35493:intron | 35.0% | |
| TCTTCTTCTTCTTCTTCTTG+AGG | - | chr2.4:65736592-65736611 | None:intergenic | 35.0% | |
| TGCTATAGTGCAAGATTAGA+GGG | + | chr2.4:65738038-65738057 | MS.gene35493:intron | 35.0% | |
| TTTGTTGGATGAGATAAAGG+TGG | + | chr2.4:65738611-65738630 | MS.gene35493:intron | 35.0% | |
| ! | ACCAAAGTGTTTAGTTAGCT+TGG | + | chr2.4:65738412-65738431 | MS.gene35493:intron | 35.0% |
| ! | AGAAGATGATGATGAAGAAG+AGG | + | chr2.4:65736741-65736760 | MS.gene35493:intron | 35.0% |
| ! | GTCTGTTTTATGAATGGTCT+TGG | + | chr2.4:65738673-65738692 | MS.gene35493:intron | 35.0% |
| ! | TAAGGCAGATCAAATTTTGG+TGG | + | chr2.4:65736870-65736889 | MS.gene35493:CDS | 35.0% |
| ! | TGCTAAGGCAGATCAAATTT+TGG | + | chr2.4:65736867-65736886 | MS.gene35493:CDS | 35.0% |
| !! | AGAGAGACAATTGATGATGA+TGG | + | chr2.4:65736840-65736859 | MS.gene35493:CDS | 35.0% |
| !! | CATTTGTGCTTTAGAGGAAA+CGG | + | chr2.4:65737873-65737892 | MS.gene35493:CDS | 35.0% |
| !! | GGTATATAACAATTGGTTCG+CGG | + | chr2.4:65737894-65737913 | MS.gene35493:intron | 35.0% |
| !! | GTATATAACAATTGGTTCGC+GGG | + | chr2.4:65737895-65737914 | MS.gene35493:intron | 35.0% |
| !! | TATATAACAATTGGTTCGCG+GGG | + | chr2.4:65737896-65737915 | MS.gene35493:intron | 35.0% |
| !! | TGACTAGTTTATGGAGAGAT+AGG | + | chr2.4:65737950-65737969 | MS.gene35493:intron | 35.0% |
| !! | TTTTGGCTAAGTGTAGATGA+AGG | + | chr2.4:65737725-65737744 | MS.gene35493:intron | 35.0% |
| !!! | GGTTTTGTTGGATGAGATAA+AGG | + | chr2.4:65738608-65738627 | MS.gene35493:intron | 35.0% |
| !!! | TTTAGCTTTTATGGGGACTT+GGG | + | chr2.4:65738731-65738750 | MS.gene35493:intron | 35.0% |
| !!! | TTTTAGCTTTTATGGGGACT+TGG | + | chr2.4:65738730-65738749 | MS.gene35493:intron | 35.0% |
| AATTCAGCAACAACACAACC+AGG | - | chr2.4:65738858-65738877 | None:intergenic | 40.0% | |
| ACTCAACTGTCATCAGAATG+GGG | - | chr2.4:65737354-65737373 | None:intergenic | 40.0% | |
| ATAGAACCAGCAGTTCTTGA+AGG | - | chr2.4:65738134-65738153 | None:intergenic | 40.0% | |
| ATCTCAAATGCACATTCTGG+AGG | + | chr2.4:65736936-65736955 | MS.gene35493:CDS | 40.0% | |
| ATGAGATAAAGGTGGTATCG+TGG | + | chr2.4:65738619-65738638 | MS.gene35493:intron | 40.0% | |
| CACACTCGAGAATCTTCAAT+TGG | - | chr2.4:65738321-65738340 | None:intergenic | 40.0% | |
| CACCACCTAGAAGAATTGTA+AGG | - | chr2.4:65737847-65737866 | None:intergenic | 40.0% | |
| CCAGACCTTTGCATATAGAA+AGG | - | chr2.4:65736533-65736552 | None:intergenic | 40.0% | |
| CCATTCATAAAACAGACACG+GGG | - | chr2.4:65738670-65738689 | None:intergenic | 40.0% | |
| CCTGTTCTAGTGTTTGAGTA+GGG | + | chr2.4:65738468-65738487 | MS.gene35493:intron | 40.0% | |
| CCTTTCTATATGCAAAGGTC+TGG | + | chr2.4:65736530-65736549 | MS.gene35493:intron | 40.0% | |
| CTAGTTTATGGAGAGATAGG+CGG | + | chr2.4:65737953-65737972 | MS.gene35493:intron | 40.0% | |
| CTTACAATTCTTCTAGGTGG+TGG | + | chr2.4:65737845-65737864 | MS.gene35493:CDS | 40.0% | |
| GAAGAAGATGATGAAGAAGG+AGG | + | chr2.4:65736625-65736644 | MS.gene35493:intron | 40.0% | |
| GAAGCTCTTATCGAGATTCA+CGG | + | chr2.4:65736501-65736520 | MS.gene35493:CDS | 40.0% | |
| GTCCTTACAATTCTTCTAGG+TGG | + | chr2.4:65737842-65737861 | MS.gene35493:CDS | 40.0% | |
| TATCGAAGGAAGTTCTTGTG+AGG | + | chr2.4:65737770-65737789 | MS.gene35493:CDS | 40.0% | |
| TCCTGTTCTAGTGTTTGAGT+AGG | + | chr2.4:65738467-65738486 | MS.gene35493:intron | 40.0% | |
| TGAAGATTCTCGAGTGTGTT+TGG | + | chr2.4:65738323-65738342 | MS.gene35493:intron | 40.0% | |
| TGAGAATAGGTTCAGTAGCA+TGG | + | chr2.4:65738173-65738192 | MS.gene35493:intron | 40.0% | |
| TGATGAAGAAGAGGAAGAAG+AGG | + | chr2.4:65736750-65736769 | MS.gene35493:intron | 40.0% | |
| ! | GAGGGTATATTGCAAAACGA+GGG | + | chr2.4:65737502-65737521 | MS.gene35493:intron | 40.0% |
| ! | GATGACGATGATGATGAAGA+TGG | + | chr2.4:65736712-65736731 | MS.gene35493:intron | 40.0% |
| ! | GGGACATTAACTCAGTCTTT+TGG | + | chr2.4:65737708-65737727 | MS.gene35493:intron | 40.0% |
| ! | TCGGTTTCTGAAAGGGAAAT+TGG | + | chr2.4:65736897-65736916 | MS.gene35493:CDS | 40.0% |
| ! | TGAGGGTATATTGCAAAACG+AGG | + | chr2.4:65737501-65737520 | MS.gene35493:intron | 40.0% |
| ! | TGGATGTTCGGTTTCTGAAA+GGG | + | chr2.4:65736890-65736909 | MS.gene35493:CDS | 40.0% |
| !! | GGATGTTGGTGATTGAGAAT+AGG | + | chr2.4:65738160-65738179 | MS.gene35493:CDS | 40.0% |
| !! | TCAAGAACTGCTGGTTCTAT+TGG | + | chr2.4:65738134-65738153 | MS.gene35493:CDS | 40.0% |
| !! | TTAGCTTTTATGGGGACTTG+GGG | + | chr2.4:65738732-65738751 | MS.gene35493:intron | 40.0% |
| AAATCAACCCATAGCCCTTC+CGG | - | chr2.4:65738509-65738528 | None:intergenic | 45.0% | |
| AAGAAAATCCGGAAGGGCTA+TGG | + | chr2.4:65738498-65738517 | MS.gene35493:intron | 45.0% | |
| AATGTGACAAGGCGAAATGG+TGG | - | chr2.4:65737612-65737631 | None:intergenic | 45.0% | |
| ACAATTGCCGATGAACGAGT+TGG | + | chr2.4:65736786-65736805 | MS.gene35493:intron | 45.0% | |
| ACCAATGTGACAAGGCGAAA+TGG | - | chr2.4:65737615-65737634 | None:intergenic | 45.0% | |
| ACCATTTCGCCTTGTCACAT+TGG | + | chr2.4:65737611-65737630 | MS.gene35493:intron | 45.0% | |
| AGAAAATCCGGAAGGGCTAT+GGG | + | chr2.4:65738499-65738518 | MS.gene35493:intron | 45.0% | |
| AGAGGAAGAAGAGGAAGAAG+AGG | + | chr2.4:65736759-65736778 | MS.gene35493:intron | 45.0% | |
| AGATAAAGGTGGTATCGTGG+AGG | + | chr2.4:65738622-65738641 | MS.gene35493:intron | 45.0% | |
| AGCTTAGCCAACTCGTTCAT+CGG | - | chr2.4:65736796-65736815 | None:intergenic | 45.0% | |
| AGGGAAATGGGATAGGAAAG+TGG | + | chr2.4:65737521-65737540 | MS.gene35493:intron | 45.0% | |
| AGTGCAAGATTAGAGGGTGA+GGG | + | chr2.4:65738044-65738063 | MS.gene35493:intron | 45.0% | |
| ATATCTTGCATAGGGCAGAG+TGG | + | chr2.4:65737806-65737825 | MS.gene35493:CDS | 45.0% | |
| ATCTTCACGACGACATCACA+GGG | - | chr2.4:65738770-65738789 | None:intergenic | 45.0% | |
| ATTTCGATCAACAGCTCCTC+CGG | - | chr2.4:65736397-65736416 | None:intergenic | 45.0% | |
| CAAAACGAGGGAAATGGGAT+AGG | + | chr2.4:65737514-65737533 | MS.gene35493:intron | 45.0% | |
| CCCTACTCAAACACTAGAAC+AGG | - | chr2.4:65738471-65738490 | None:intergenic | 45.0% | |
| GAAGATGATGAAGAAGGAGG+AGG | + | chr2.4:65736628-65736647 | MS.gene35493:intron | 45.0% | |
| GAATAGGTTCAGTAGCATGG+AGG | + | chr2.4:65738176-65738195 | MS.gene35493:intron | 45.0% | |
| GCGTAGGAGATTGTTTGTGT+GGG | + | chr2.4:65738098-65738117 | MS.gene35493:intron | 45.0% | |
| GGGAAATGGGATAGGAAAGT+GGG | + | chr2.4:65737522-65737541 | MS.gene35493:intron | 45.0% | |
| GTGGATGTTCGGTTTCTGAA+AGG | + | chr2.4:65736889-65736908 | MS.gene35493:CDS | 45.0% | |
| GTGTCTCAAAAGCTTTCTGC+AGG | + | chr2.4:65736969-65736988 | MS.gene35493:CDS | 45.0% | |
| TAACCTCCTTCAAGAACTGC+TGG | + | chr2.4:65738125-65738144 | MS.gene35493:CDS | 45.0% | |
| TAGGAGATTGTTTGTGTGGG+AGG | + | chr2.4:65738101-65738120 | MS.gene35493:intron | 45.0% | |
| TAGTGCAAGATTAGAGGGTG+AGG | + | chr2.4:65738043-65738062 | MS.gene35493:intron | 45.0% | |
| TATCTTCACGACGACATCAC+AGG | - | chr2.4:65738771-65738790 | None:intergenic | 45.0% | |
| TATCTTGCATAGGGCAGAGT+GGG | + | chr2.4:65737807-65737826 | MS.gene35493:CDS | 45.0% | |
| TGTCACATTGGTCCCTAACA+GGG | + | chr2.4:65737623-65737642 | MS.gene35493:intron | 45.0% | |
| TGTTAGGGACCAATGTGACA+AGG | - | chr2.4:65737623-65737642 | None:intergenic | 45.0% | |
| TTATGGAGAGATAGGCGGAT+GGG | + | chr2.4:65737958-65737977 | MS.gene35493:intron | 45.0% | |
| TTGTCACATTGGTCCCTAAC+AGG | + | chr2.4:65737622-65737641 | MS.gene35493:intron | 45.0% | |
| TTTATGGAGAGATAGGCGGA+TGG | + | chr2.4:65737957-65737976 | MS.gene35493:intron | 45.0% | |
| ! | CCCCGTGTCTGTTTTATGAA+TGG | + | chr2.4:65738667-65738686 | MS.gene35493:intron | 45.0% |
| !! | AACTGCTGGTTCTATTGGAG+GGG | + | chr2.4:65738139-65738158 | MS.gene35493:CDS | 45.0% |
| !! | AGAACTGCTGGTTCTATTGG+AGG | + | chr2.4:65738137-65738156 | MS.gene35493:CDS | 45.0% |
| !! | ATGGGGCCTTGACTAGTTTA+TGG | + | chr2.4:65737941-65737960 | MS.gene35493:intron | 45.0% |
| !! | GAACTGCTGGTTCTATTGGA+GGG | + | chr2.4:65738138-65738157 | MS.gene35493:CDS | 45.0% |
| !! | GATGATGATGGCAGTTGCTA+AGG | + | chr2.4:65736852-65736871 | MS.gene35493:CDS | 45.0% |
| !! | GTTCTGGTTGTTTGAGTTGC+AGG | + | chr2.4:65738832-65738851 | MS.gene35493:intron | 45.0% |
| !!! | TCTGGAGGTGGGTTTTTTCT+TGG | + | chr2.4:65738076-65738095 | MS.gene35493:intron | 45.0% |
| AGCAGCAGAGAACAGAAAGG+GGG | - | chr2.4:65738809-65738828 | None:intergenic | 50.0% | |
| ATCTTGCATAGGGCAGAGTG+GGG | + | chr2.4:65737808-65737827 | MS.gene35493:CDS | 50.0% | |
| CAAGATTAGAGGGTGAGGGA+AGG | + | chr2.4:65738048-65738067 | MS.gene35493:intron | 50.0% | |
| CAGCAGCAGAGAACAGAAAG+GGG | - | chr2.4:65738810-65738829 | None:intergenic | 50.0% | |
| CTTTCTGTTCTCTGCTGCTG+CGG | + | chr2.4:65738810-65738829 | MS.gene35493:intron | 50.0% | |
| GAACCAGCAGTTCTTGAAGG+AGG | - | chr2.4:65738131-65738150 | None:intergenic | 50.0% | |
| GCAGCAGCAGAGAACAGAAA+GGG | - | chr2.4:65738811-65738830 | None:intergenic | 50.0% | |
| GGAAGGTAATGTCTGGAGGT+GGG | + | chr2.4:65738065-65738084 | MS.gene35493:intron | 50.0% | |
| GGCGTAGGAGATTGTTTGTG+TGG | + | chr2.4:65738097-65738116 | MS.gene35493:intron | 50.0% | |
| GGTTCTATTGGAGGGGATGT+TGG | + | chr2.4:65738146-65738165 | MS.gene35493:CDS | 50.0% | |
| TAAAGGTGGTATCGTGGAGG+TGG | + | chr2.4:65738625-65738644 | MS.gene35493:intron | 50.0% | |
| TATGGAGAGATAGGCGGATG+GGG | + | chr2.4:65737959-65737978 | MS.gene35493:intron | 50.0% | |
| TGAGGGAAGGTAATGTCTGG+AGG | + | chr2.4:65738061-65738080 | MS.gene35493:intron | 50.0% | |
| TGAGGTGCGTTTGCAAGTTG+TGG | + | chr2.4:65736446-65736465 | MS.gene35493:CDS | 50.0% | |
| TTTCGATCAACAGCTCCTCC+GGG | - | chr2.4:65736396-65736415 | None:intergenic | 50.0% | |
| ! | ATGAATGGTCTTGGGACCCA+GGG | + | chr2.4:65738682-65738701 | MS.gene35493:intron | 50.0% |
| ! | GAGGTGGAGTTTGAGACTGA+AGG | + | chr2.4:65738641-65738660 | MS.gene35493:intron | 50.0% |
| ! | TATGAATGGTCTTGGGACCC+AGG | + | chr2.4:65738681-65738700 | MS.gene35493:intron | 50.0% |
| !! | CGCGGGGACAGTTTTTAGAA+TGG | + | chr2.4:65737912-65737931 | MS.gene35493:intron | 50.0% |
| !! | CTCGAGTGTGTTTGGTGTGT+TGG | + | chr2.4:65738331-65738350 | MS.gene35493:intron | 50.0% |
| !! | GGAAGGGCTATGGGTTGATT+TGG | + | chr2.4:65738508-65738527 | MS.gene35493:intron | 50.0% |
| !!! | GGTGGGTTTTTTCTTGGCGT+AGG | + | chr2.4:65738082-65738101 | MS.gene35493:intron | 50.0% |
| CGCAGCAGCAGAGAACAGAA+AGG | - | chr2.4:65738812-65738831 | None:intergenic | 55.0% | |
| GGGAAGGTAATGTCTGGAGG+TGG | + | chr2.4:65738064-65738083 | MS.gene35493:intron | 55.0% | |
| GGGTGAGGGAAGGTAATGTC+TGG | + | chr2.4:65738058-65738077 | MS.gene35493:intron | 55.0% | |
| TTTATGGGGACTTGGGGTGG+AGG | + | chr2.4:65738738-65738757 | MS.gene35493:intron | 55.0% | |
| ! | GCTTTTATGGGGACTTGGGG+TGG | + | chr2.4:65738735-65738754 | MS.gene35493:intron | 55.0% |
| !! | GGTTGTTTGAGTTGCAGGCC+TGG | + | chr2.4:65738837-65738856 | MS.gene35493:intron | 55.0% |
| GTCACCGATCTCGGTAGTCC+CGG | + | chr2.4:65736375-65736394 | MS.gene35493:CDS | 60.0% | |
| GTTCTCTGCTGCTGCGGTTC+TGG | + | chr2.4:65738816-65738835 | MS.gene35493:intron | 60.0% | |
| TCCTCCGGGACTACCGAGAT+CGG | - | chr2.4:65736382-65736401 | None:intergenic | 60.0% | |
| ACCGATCTCGGTAGTCCCGG+AGG | + | chr2.4:65736378-65736397 | MS.gene35493:CDS | 65.0% | |
| GACGGCGGAGTCACCGATCT+CGG | + | chr2.4:65736366-65736385 | MS.gene35493:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 65736352 | 65738881 | 65736352 | ID=MS.gene35493 |
| chr2.4 | mRNA | 65736352 | 65738881 | 65736352 | ID=MS.gene35493.t1;Parent=MS.gene35493 |
| chr2.4 | exon | 65736352 | 65736546 | 65736352 | ID=MS.gene35493.t1.exon1;Parent=MS.gene35493.t1 |
| chr2.4 | CDS | 65736352 | 65736546 | 65736352 | ID=cds.MS.gene35493.t1;Parent=MS.gene35493.t1 |
| chr2.4 | exon | 65736805 | 65736990 | 65736805 | ID=MS.gene35493.t1.exon2;Parent=MS.gene35493.t1 |
| chr2.4 | CDS | 65736805 | 65736990 | 65736805 | ID=cds.MS.gene35493.t1;Parent=MS.gene35493.t1 |
| chr2.4 | exon | 65737766 | 65737908 | 65737766 | ID=MS.gene35493.t1.exon3;Parent=MS.gene35493.t1 |
| chr2.4 | CDS | 65737766 | 65737908 | 65737766 | ID=cds.MS.gene35493.t1;Parent=MS.gene35493.t1 |
| chr2.4 | exon | 65738104 | 65738181 | 65738104 | ID=MS.gene35493.t1.exon4;Parent=MS.gene35493.t1 |
| chr2.4 | CDS | 65738104 | 65738181 | 65738104 | ID=cds.MS.gene35493.t1;Parent=MS.gene35493.t1 |
| chr2.4 | exon | 65738854 | 65738881 | 65738854 | ID=MS.gene35493.t1.exon5;Parent=MS.gene35493.t1 |
| chr2.4 | CDS | 65738854 | 65738881 | 65738854 | ID=cds.MS.gene35493.t1;Parent=MS.gene35493.t1 |
| Gene Sequence |
| Protein sequence |
