Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050437.t1 | XP_024625665.1 | 96.7 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 4.20E-58 | 233.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050437.t1 | G7KTP9 | 96.7 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 3.0e-58 | 233.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene050437 | 0.826765 | 2.27E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene050437 | 0.807767 | 4.30E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene050689 | 0.83572 | 1.42E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene050752 | 0.86622 | 3.34E-65 | -1.69E-46 |
| MS.gene050437 | MS.gene050955 | 0.872199 | 3.82E-67 | -1.69E-46 |
| MS.gene050437 | MS.gene051003 | 0.836293 | 1.02E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene051234 | 0.803862 | 2.85E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene051241 | 0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene051328 | 0.836014 | 1.20E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene05134 | 0.823197 | 1.58E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene052947 | 0.803039 | 4.22E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene053590 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene054403 | 0.86172 | 8.41E-64 | -1.69E-46 |
| MS.gene050437 | MS.gene055162 | 0.833199 | 6.12E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene056760 | 0.803888 | 2.81E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene056787 | 0.805241 | 1.47E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene057694 | 0.821404 | 4.11E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene057705 | 0.832462 | 9.32E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene058906 | 0.800318 | 1.52E-48 | -1.69E-46 |
| MS.gene050437 | MS.gene06172 | 0.80986 | 1.54E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene061877 | 0.811803 | 5.83E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene061878 | 0.832958 | 7.02E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene061963 | 0.801599 | 8.35E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene063025 | 0.800349 | 1.50E-48 | -1.69E-46 |
| MS.gene050437 | MS.gene063026 | 0.848365 | 6.42E-60 | -1.69E-46 |
| MS.gene050437 | MS.gene063119 | 0.803223 | 3.86E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene06371 | 0.803498 | 3.39E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene063787 | 0.803681 | 3.10E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene064071 | 0.864962 | 8.33E-65 | -1.69E-46 |
| MS.gene050437 | MS.gene064072 | 0.866562 | 2.60E-65 | -1.69E-46 |
| MS.gene050437 | MS.gene065072 | 0.805813 | 1.11E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene066543 | 0.834887 | 2.31E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene067571 | 0.803544 | 3.31E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene068164 | 0.834559 | 2.79E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene068166 | 0.864979 | 8.23E-65 | -1.69E-46 |
| MS.gene050437 | MS.gene069310 | 0.8172 | 3.73E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene069828 | 0.82414 | 9.49E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene06984 | 0.828112 | 1.08E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene06989 | 0.835465 | 1.65E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene070222 | 0.814304 | 1.65E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene07090 | 0.943255 | 1.67E-102 | -1.69E-46 |
| MS.gene050437 | MS.gene07100 | 0.860662 | 1.77E-63 | -1.69E-46 |
| MS.gene050437 | MS.gene071074 | 0.818194 | 2.23E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene071076 | 0.804791 | 1.82E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene071751 | 0.818255 | 2.16E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene07217 | 0.841943 | 3.50E-58 | -1.69E-46 |
| MS.gene050437 | MS.gene07222 | 0.831738 | 1.41E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene072424 | 0.821712 | 3.49E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene072555 | 0.87953 | 1.16E-69 | -1.69E-46 |
| MS.gene050437 | MS.gene073207 | 0.833814 | 4.30E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene07339 | 0.814793 | 1.29E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene073674 | 0.856835 | 2.46E-62 | -1.69E-46 |
| MS.gene050437 | MS.gene073954 | 0.813598 | 2.36E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene074000 | 0.808175 | 3.52E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene074435 | 0.802856 | 4.60E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene08428 | 0.818364 | 2.04E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene08470 | 0.819244 | 1.29E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene08724 | 0.816095 | 6.60E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene08793 | 0.803547 | 3.31E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene09032 | 0.828393 | 9.22E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene09870 | 0.809123 | 2.21E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene20302 | 0.805831 | 1.10E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene20740 | 0.832247 | 1.05E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene20886 | 0.82924 | 5.75E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene22321 | 0.801309 | 9.57E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene22499 | 0.809394 | 1.93E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene22740 | 0.818244 | 2.17E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene22968 | 0.84044 | 8.68E-58 | -1.69E-46 |
| MS.gene050437 | MS.gene23058 | 0.80378 | 2.96E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene23954 | 0.80856 | 2.92E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene24610 | 0.804288 | 2.32E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene24923 | 0.813841 | 2.09E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene24930 | 0.829549 | 4.84E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene26567 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene32183 | 0.847523 | 1.10E-59 | -1.69E-46 |
| MS.gene050437 | MS.gene35034 | 0.825165 | 5.44E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene35048 | 0.833579 | 4.92E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene35214 | 0.827098 | 1.89E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene35493 | 0.82303 | 1.72E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene38569 | 0.802688 | 4.98E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene39405 | 0.84541 | 4.13E-59 | -1.69E-46 |
| MS.gene050437 | MS.gene39586 | 0.802824 | 4.67E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene40055 | 0.823017 | 1.74E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene40595 | 0.815914 | 7.24E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene41775 | 0.80207 | 6.68E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene42302 | 0.805891 | 1.07E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene43537 | 0.81109 | 8.33E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene44141 | 0.814678 | 1.36E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene44260 | 0.804257 | 2.36E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene46252 | 0.837402 | 5.31E-57 | -1.69E-46 |
| MS.gene050437 | MS.gene48256 | 0.828794 | 7.37E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene50004 | 0.815573 | 8.63E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene50013 | 0.813419 | 2.58E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene51142 | 0.803761 | 2.99E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene51445 | 0.823922 | 1.07E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene52075 | 0.80462 | 1.98E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene52837 | 0.842161 | 3.06E-58 | -1.69E-46 |
| MS.gene050437 | MS.gene53070 | 0.8095 | 1.84E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene54282 | 0.808224 | 3.44E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene54919 | 0.834695 | 2.58E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene55530 | 0.807589 | 4.70E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene55887 | 0.835988 | 1.22E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene55988 | 0.806752 | 7.06E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene56436 | 0.807639 | 4.58E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene56451 | 0.841753 | 3.92E-58 | -1.69E-46 |
| MS.gene050437 | MS.gene56656 | 0.845242 | 4.59E-59 | -1.69E-46 |
| MS.gene050437 | MS.gene57210 | 0.828754 | 7.54E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene57214 | 0.836062 | 1.17E-56 | -1.69E-46 |
| MS.gene050437 | MS.gene59505 | 0.818592 | 1.81E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene59979 | 0.817747 | 2.81E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene60717 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene61543 | 0.815651 | 8.29E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene62834 | 0.816856 | 4.46E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene63726 | 0.815875 | 7.39E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene64806 | 0.819647 | 1.04E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene68136 | 0.883607 | 3.89E-71 | -1.69E-46 |
| MS.gene050437 | MS.gene68215 | 0.805294 | 1.43E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene68735 | 0.876086 | 1.85E-68 | -1.69E-46 |
| MS.gene050437 | MS.gene68810 | 0.859666 | 3.53E-63 | -1.69E-46 |
| MS.gene050437 | MS.gene69649 | 0.823817 | 1.13E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene69820 | 0.828109 | 1.08E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene70398 | 0.832098 | 1.15E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene70460 | 0.80179 | 7.62E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene70577 | 0.800983 | 1.12E-48 | -1.69E-46 |
| MS.gene050437 | MS.gene71215 | 0.830828 | 2.36E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene71616 | 0.811657 | 6.27E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene71994 | 0.801843 | 7.44E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene72285 | 0.826657 | 2.41E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene72413 | 0.821155 | 4.69E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene73243 | 0.801361 | 9.34E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene73364 | 0.815774 | 7.78E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene74458 | 0.848303 | 6.68E-60 | -1.69E-46 |
| MS.gene050437 | MS.gene75148 | 0.828869 | 7.07E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene75604 | 0.8223 | 2.55E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene75680 | 0.826514 | 2.60E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene76248 | 0.808548 | 2.93E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene76635 | 0.808435 | 3.10E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene78314 | 0.814974 | 1.17E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene82421 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene85610 | 0.806535 | 7.85E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene86265 | 0.813537 | 2.43E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene86381 | 0.807341 | 5.30E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene86392 | 0.815113 | 1.09E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene87292 | 0.823152 | 1.62E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene89027 | 0.809185 | 2.14E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene89677 | 0.854531 | 1.16E-61 | -1.69E-46 |
| MS.gene050437 | MS.gene90232 | 0.817909 | 2.58E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene90649 | 0.809321 | 2.00E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene90861 | 0.8437 | 1.19E-58 | -1.69E-46 |
| MS.gene050437 | MS.gene90981 | 0.850607 | 1.52E-60 | -1.69E-46 |
| MS.gene050437 | MS.gene91203 | 0.839698 | 1.36E-57 | -1.69E-46 |
| MS.gene050437 | MS.gene92135 | 0.800678 | 1.29E-48 | -1.69E-46 |
| MS.gene050437 | MS.gene92572 | 0.81471 | 1.34E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene94952 | 0.821244 | 4.48E-53 | -1.69E-46 |
| MS.gene050437 | MS.gene95233 | 0.820671 | 6.06E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050437.t1 | MTR_7g109980 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 2.55e-81 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050437.t1 | AT4G01897 | 63.248 | 117 | 43 | 0 | 3 | 119 | 5 | 121 | 2.97e-55 | 168 |
Find 24 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATCTAGTTTGCTAAGA+TGG | 0.325847 | 7.1:+4611843 | None:intergenic |
| CAAAGAAATGGGTCCACTTT+CGG | 0.360708 | 7.1:-4611896 | MS.gene050437:CDS |
| TCCTCAGCTTGGCGATGGTT+TGG | 0.387394 | 7.1:-4610600 | MS.gene050437:intron |
| TGGGAAGAATTGCAAAGAAA+TGG | 0.392074 | 7.1:-4611908 | MS.gene050437:CDS |
| TCTTCAGATTGATGCTAAGA+AGG | 0.429001 | 7.1:-4611636 | MS.gene050437:intron |
| CCATCTTAGCAAACTAGATC+AGG | 0.463319 | 7.1:-4611843 | MS.gene050437:intron |
| GTCAAGTTCACCACCGAAAG+TGG | 0.465358 | 7.1:+4611883 | None:intergenic |
| CTATTTCCTCAGCTTGGCGA+TGG | 0.484872 | 7.1:-4610605 | MS.gene050437:intron |
| AATCAGCACGGCGAAGGAAT+GGG | 0.486850 | 7.1:-4611927 | MS.gene050437:CDS |
| GGGAAGAATTGCAAAGAAAT+GGG | 0.488668 | 7.1:-4611907 | MS.gene050437:CDS |
| GAATCAGCACGGCGAAGGAA+TGG | 0.494049 | 7.1:-4611928 | MS.gene050437:CDS |
| GAGAAGCTGTCTCTTTCAAA+TGG | 0.500982 | 7.1:-4610482 | MS.gene050437:CDS |
| AGCTGTCTCTTTCAAATGGT+CGG | 0.507865 | 7.1:-4610478 | MS.gene050437:CDS |
| TCTTAGCATCAATCTGAAGA+AGG | 0.553114 | 7.1:+4611639 | None:intergenic |
| TGGTTTGGTGTATGAAATTG+TGG | 0.564813 | 7.1:-4610585 | MS.gene050437:CDS |
| GTGACCACATCTAGAGAGAG+AGG | 0.580003 | 7.1:+4610512 | None:intergenic |
| GTACAGAATCAGCACGGCGA+AGG | 0.581959 | 7.1:-4611933 | MS.gene050437:CDS |
| ATTGCAGGTTCGATCAACGT+TGG | 0.585116 | 7.1:-4611696 | MS.gene050437:intron |
| TATCCCTCTCTCTCTAGATG+TGG | 0.592426 | 7.1:-4610516 | MS.gene050437:CDS |
| TTGGTGTATGAAATTGTGGA+CGG | 0.638694 | 7.1:-4610581 | MS.gene050437:CDS |
| AGAAATGGGTCCACTTTCGG+TGG | 0.639639 | 7.1:-4611893 | MS.gene050437:CDS |
| TCTAGATGTGGTCACAAAAG+CGG | 0.643197 | 7.1:-4610504 | MS.gene050437:CDS |
| AGAGGGATAAAGCTTCGAGA+AGG | 0.643890 | 7.1:+4610530 | None:intergenic |
| TGACCACATCTAGAGAGAGA+GGG | 0.654116 | 7.1:+4610513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTATTTTATTATTGC+AGG | - | chr7.1:4610690-4610709 | MS.gene050437:intron | 10.0% |
| !! | CACAGTTATTTATTATTATT+AGG | - | chr7.1:4611713-4611732 | MS.gene050437:intron | 15.0% |
| !! | TAATTAAAAAACATGCTTAT+TGG | - | chr7.1:4610853-4610872 | MS.gene050437:intron | 15.0% |
| !!! | GTTTCTTTTACTATAAATAT+AGG | + | chr7.1:4611379-4611398 | None:intergenic | 15.0% |
| !!! | ATTTTTCAGAAACGTATTTT+TGG | + | chr7.1:4611428-4611447 | None:intergenic | 20.0% |
| !!! | CAGATTTGTTACAATTTTAT+GGG | + | chr7.1:4611403-4611422 | None:intergenic | 20.0% |
| !!! | TAAAAAAAAGCATAGTGAAA+GGG | + | chr7.1:4610804-4610823 | None:intergenic | 20.0% |
| !!! | TTAAAAAAAAGCATAGTGAA+AGG | + | chr7.1:4610805-4610824 | None:intergenic | 20.0% |
| !!! | TTTTTCAGAAACGTATTTTT+GGG | + | chr7.1:4611427-4611446 | None:intergenic | 20.0% |
| ! | CCATAAAATTGTAACAAATC+TGG | - | chr7.1:4611401-4611420 | MS.gene050437:intron | 25.0% |
| ! | GTTCTATTCACTTTGATTAT+TGG | + | chr7.1:4610977-4610996 | None:intergenic | 25.0% |
| ! | TTGATTCAACTAAAATCTGA+AGG | - | chr7.1:4611614-4611633 | MS.gene050437:intron | 25.0% |
| !! | TTTCAGCAAACATCAATTTT+TGG | - | chr7.1:4611550-4611569 | MS.gene050437:intron | 25.0% |
| !!! | CCAGATTTGTTACAATTTTA+TGG | + | chr7.1:4611404-4611423 | None:intergenic | 25.0% |
| !!! | TATTAGAAAAGTATCTGTTG+CGG | - | chr7.1:4610889-4610908 | MS.gene050437:intron | 25.0% |
| AAAATAACAGCACGCAAAAT+CGG | - | chr7.1:4611443-4611462 | MS.gene050437:intron | 30.0% | |
| TAACGTTACTCATCATATAG+TGG | + | chr7.1:4611128-4611147 | None:intergenic | 30.0% | |
| TATAAGTCGCTTCATTCATT+CGG | - | chr7.1:4610648-4610667 | MS.gene050437:intron | 30.0% | |
| TTGTATAGAGTTTGTCTCTT+TGG | + | chr7.1:4611282-4611301 | None:intergenic | 30.0% | |
| TTGTGAAAGTGACTCAAAAT+TGG | + | chr7.1:4611586-4611605 | None:intergenic | 30.0% | |
| ! | TGTTTGCTGAAAGTACAAAT+CGG | + | chr7.1:4611542-4611561 | None:intergenic | 30.0% |
| ! | TTACTCATCATATAGTGGAA+CGG | + | chr7.1:4611123-4611142 | None:intergenic | 30.0% |
| !! | AATAGCTTCCCTCATTTTTA+TGG | - | chr7.1:4611847-4611866 | MS.gene050437:CDS | 30.0% |
| !! | AGTGTAAACTTTGAGATAGA+GGG | + | chr7.1:4611347-4611366 | None:intergenic | 30.0% |
| !! | ATAGCTTCCCTCATTTTTAT+GGG | - | chr7.1:4611848-4611867 | MS.gene050437:CDS | 30.0% |
| AAATAACAGCACGCAAAATC+GGG | - | chr7.1:4611444-4611463 | MS.gene050437:intron | 35.0% | |
| AAGAATCTGTTTACCCAGTT+CGG | - | chr7.1:4611061-4611080 | MS.gene050437:intron | 35.0% | |
| AATCCTAATAGTGTTTCCCA+AGG | - | chr7.1:4611227-4611246 | MS.gene050437:intron | 35.0% | |
| ACCAATAACAACTTGATGTG+TGG | - | chr7.1:4610931-4610950 | MS.gene050437:intron | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | + | chr7.1:4611219-4611238 | None:intergenic | 35.0% | |
| AGAAAGGCAACAACAAAACT+AGG | + | chr7.1:4611307-4611326 | None:intergenic | 35.0% | |
| AGTGACTCAAAATTGGAGTT+TGG | + | chr7.1:4611579-4611598 | None:intergenic | 35.0% | |
| GAAAGGCAACAACAAAACTA+GGG | + | chr7.1:4611306-4611325 | None:intergenic | 35.0% | |
| GAGTAACGTTACAAAAGAGA+TGG | - | chr7.1:4611137-4611156 | MS.gene050437:intron | 35.0% | |
| GGGAAGAATTGCAAAGAAAT+GGG | - | chr7.1:4610494-4610513 | MS.gene050437:CDS | 35.0% | |
| TCTTAGCATCAATCTGAAGA+AGG | + | chr7.1:4610765-4610784 | None:intergenic | 35.0% | |
| TCTTCAGATTGATGCTAAGA+AGG | - | chr7.1:4610765-4610784 | MS.gene050437:intron | 35.0% | |
| TGGGAAGAATTGCAAAGAAA+TGG | - | chr7.1:4610493-4610512 | MS.gene050437:CDS | 35.0% | |
| TTGGTGTATGAAATTGTGGA+CGG | - | chr7.1:4611820-4611839 | MS.gene050437:intron | 35.0% | |
| ! | CAGTTTGGTACTGGAAAAAT+CGG | + | chr7.1:4611493-4611512 | None:intergenic | 35.0% |
| ! | GTTTGCTGAAAGTACAAATC+GGG | + | chr7.1:4611541-4611560 | None:intergenic | 35.0% |
| ! | TCCACACATCAAGTTGTTAT+TGG | + | chr7.1:4610935-4610954 | None:intergenic | 35.0% |
| ! | TTTGCTGAAAGTACAAATCG+GGG | + | chr7.1:4611540-4611559 | None:intergenic | 35.0% |
| ! | TTTTGTGTACAGAATCAGCA+CGG | - | chr7.1:4610462-4610481 | MS.gene050437:CDS | 35.0% |
| !! | CAGTGTAAACTTTGAGATAG+AGG | + | chr7.1:4611348-4611367 | None:intergenic | 35.0% |
| !! | GTGTAAACTTTGAGATAGAG+GGG | + | chr7.1:4611346-4611365 | None:intergenic | 35.0% |
| !! | TGGTTTGGTGTATGAAATTG+TGG | - | chr7.1:4611816-4611835 | MS.gene050437:intron | 35.0% |
| !! | TGTAAACTTTGAGATAGAGG+GGG | + | chr7.1:4611345-4611364 | None:intergenic | 35.0% |
| !!! | GCTGTGTTGTTTTCTACTTT+TGG | + | chr7.1:4611015-4611034 | None:intergenic | 35.0% |
| !!! | TTTTGAGGTTGATTCACCTT+GGG | + | chr7.1:4611246-4611265 | None:intergenic | 35.0% |
| AGCTGTCTCTTTCAAATGGT+CGG | - | chr7.1:4611923-4611942 | MS.gene050437:CDS | 40.0% | |
| AGGATTGAGTCTCTTGGTTA+CGG | + | chr7.1:4611213-4611232 | None:intergenic | 40.0% | |
| CAAAGAAATGGGTCCACTTT+CGG | - | chr7.1:4610505-4610524 | MS.gene050437:CDS | 40.0% | |
| CCATCTTAGCAAACTAGATC+AGG | - | chr7.1:4610558-4610577 | MS.gene050437:CDS | 40.0% | |
| GACTCAAAATTGGAGTTTGG+AGG | + | chr7.1:4611576-4611595 | None:intergenic | 40.0% | |
| GAGAAGCTGTCTCTTTCAAA+TGG | - | chr7.1:4611919-4611938 | MS.gene050437:CDS | 40.0% | |
| GAGAAGGCCCATAAAAATGA+GGG | + | chr7.1:4611858-4611877 | None:intergenic | 40.0% | |
| GCTGAAACAAGGGTTTAGAA+AGG | + | chr7.1:4611323-4611342 | None:intergenic | 40.0% | |
| TCACCTTGGGAAACACTATT+AGG | + | chr7.1:4611233-4611252 | None:intergenic | 40.0% | |
| TCTAGATGTGGTCACAAAAG+CGG | - | chr7.1:4611897-4611916 | MS.gene050437:CDS | 40.0% | |
| ! | GGAACAAACACTAGGTTTTG+AGG | + | chr7.1:4611261-4611280 | None:intergenic | 40.0% |
| ! | TCATCATATAGTGGAACGGA+GGG | + | chr7.1:4611119-4611138 | None:intergenic | 40.0% |
| !! | CCTGATCTAGTTTGCTAAGA+TGG | + | chr7.1:4610561-4610580 | None:intergenic | 40.0% |
| !! | GTCTCTTTGGAACAAACACT+AGG | + | chr7.1:4611269-4611288 | None:intergenic | 40.0% |
| !!! | GTTTTGAGGTTGATTCACCT+TGG | + | chr7.1:4611247-4611266 | None:intergenic | 40.0% |
| AGAGGGATAAAGCTTCGAGA+AGG | + | chr7.1:4611874-4611893 | None:intergenic | 45.0% | |
| AGGTCAATTTGGACCGAACT+GGG | + | chr7.1:4611077-4611096 | None:intergenic | 45.0% | |
| ATTGCAGGTTCGATCAACGT+TGG | - | chr7.1:4610705-4610724 | MS.gene050437:intron | 45.0% | |
| CAACTTGATGTGTGGAGCAA+AGG | - | chr7.1:4610939-4610958 | MS.gene050437:intron | 45.0% | |
| CGAGAAGGCCCATAAAAATG+AGG | + | chr7.1:4611859-4611878 | None:intergenic | 45.0% | |
| CTCCCAAAGACAGCCAAAAT+CGG | - | chr7.1:4611513-4611532 | MS.gene050437:intron | 45.0% | |
| GCTGGGATTTGGGTAGAATT+AGG | + | chr7.1:4611184-4611203 | None:intergenic | 45.0% | |
| GGATTGAGTCTCTTGGTTAC+GGG | + | chr7.1:4611212-4611231 | None:intergenic | 45.0% | |
| GGATTTGGGTAGAATTAGGC+GGG | + | chr7.1:4611180-4611199 | None:intergenic | 45.0% | |
| GGGATTTGGGTAGAATTAGG+CGG | + | chr7.1:4611181-4611200 | None:intergenic | 45.0% | |
| GGTCCAAATTGACCTAGTCT+GGG | - | chr7.1:4611082-4611101 | MS.gene050437:intron | 45.0% | |
| GTCCAAATTGACCTAGTCTG+GGG | - | chr7.1:4611083-4611102 | MS.gene050437:intron | 45.0% | |
| TAGGTCAATTTGGACCGAAC+TGG | + | chr7.1:4611078-4611097 | None:intergenic | 45.0% | |
| TATCCCTCTCTCTCTAGATG+TGG | - | chr7.1:4611885-4611904 | MS.gene050437:CDS | 45.0% | |
| TCCAAATTGACCTAGTCTGG+GGG | - | chr7.1:4611084-4611103 | MS.gene050437:intron | 45.0% | |
| TCCCAAAGACAGCCAAAATC+GGG | - | chr7.1:4611514-4611533 | MS.gene050437:intron | 45.0% | |
| TGACCACATCTAGAGAGAGA+GGG | + | chr7.1:4611891-4611910 | None:intergenic | 45.0% | |
| ! | CTCATCATATAGTGGAACGG+AGG | + | chr7.1:4611120-4611139 | None:intergenic | 45.0% |
| !! | GCTATGCTATTTCCTCAGCT+TGG | - | chr7.1:4611790-4611809 | MS.gene050437:intron | 45.0% |
| AATCAGCACGGCGAAGGAAT+GGG | - | chr7.1:4610474-4610493 | MS.gene050437:CDS | 50.0% | |
| AGAAATGGGTCCACTTTCGG+TGG | - | chr7.1:4610508-4610527 | MS.gene050437:CDS | 50.0% | |
| AGATAGAGGGGGCTGAAACA+AGG | + | chr7.1:4611334-4611353 | None:intergenic | 50.0% | |
| AGTCTCTTGGTTACGGGAAG+AGG | + | chr7.1:4611206-4611225 | None:intergenic | 50.0% | |
| CGCCCGAATGGTAAAAATCG+GGG | + | chr7.1:4611470-4611489 | None:intergenic | 50.0% | |
| CGGTCCAAATTGACCTAGTC+TGG | - | chr7.1:4611081-4611100 | MS.gene050437:intron | 50.0% | |
| CTATTTCCTCAGCTTGGCGA+TGG | - | chr7.1:4611796-4611815 | MS.gene050437:intron | 50.0% | |
| GATAGAGGGGGCTGAAACAA+GGG | + | chr7.1:4611333-4611352 | None:intergenic | 50.0% | |
| GCGCCCGAATGGTAAAAATC+GGG | + | chr7.1:4611471-4611490 | None:intergenic | 50.0% | |
| GGCGCCCGAATGGTAAAAAT+CGG | + | chr7.1:4611472-4611491 | None:intergenic | 50.0% | |
| GTCAAGTTCACCACCGAAAG+TGG | + | chr7.1:4610521-4610540 | None:intergenic | 50.0% | |
| GTGACCACATCTAGAGAGAG+AGG | + | chr7.1:4611892-4611911 | None:intergenic | 50.0% | |
| TCCCCCAGACTAGGTCAATT+TGG | + | chr7.1:4611088-4611107 | None:intergenic | 50.0% | |
| ! | CTTTGGGAGCAGTTTGGTAC+TGG | + | chr7.1:4611502-4611521 | None:intergenic | 50.0% |
| ! | GGCCCCGATTTTTACCATTC+GGG | - | chr7.1:4611465-4611484 | MS.gene050437:intron | 50.0% |
| ! | GGGCCCCGATTTTTACCATT+CGG | - | chr7.1:4611464-4611483 | MS.gene050437:intron | 50.0% |
| ! | TACAAATCGGGGCCCGATTT+TGG | + | chr7.1:4611529-4611548 | None:intergenic | 50.0% |
| !!! | GCCCGATTTTGGCTGTCTTT+GGG | + | chr7.1:4611518-4611537 | None:intergenic | 50.0% |
| ACCAAACCATCGCCAAGCTG+AGG | + | chr7.1:4611805-4611824 | None:intergenic | 55.0% | |
| ACGGGAAGAGGCTGGGATTT+GGG | + | chr7.1:4611194-4611213 | None:intergenic | 55.0% | |
| CTTGGTTACGGGAAGAGGCT+GGG | + | chr7.1:4611201-4611220 | None:intergenic | 55.0% | |
| GAATCAGCACGGCGAAGGAA+TGG | - | chr7.1:4610473-4610492 | MS.gene050437:CDS | 55.0% | |
| GTACAGAATCAGCACGGCGA+AGG | - | chr7.1:4610468-4610487 | MS.gene050437:CDS | 55.0% | |
| TACGGGAAGAGGCTGGGATT+TGG | + | chr7.1:4611195-4611214 | None:intergenic | 55.0% | |
| TCCTCAGCTTGGCGATGGTT+TGG | - | chr7.1:4611801-4611820 | MS.gene050437:intron | 55.0% | |
| TCTTGGTTACGGGAAGAGGC+TGG | + | chr7.1:4611202-4611221 | None:intergenic | 55.0% | |
| TGGAAAAATCGGCGCCCGAA+TGG | + | chr7.1:4611482-4611501 | None:intergenic | 55.0% | |
| ! | GGCTGTCTTTGGGAGCAGTT+TGG | + | chr7.1:4611508-4611527 | None:intergenic | 55.0% |
| !!! | GGCCCGATTTTGGCTGTCTT+TGG | + | chr7.1:4611519-4611538 | None:intergenic | 55.0% |
| GCTGCTCTCTCCCCCAGACT+AGG | + | chr7.1:4611097-4611116 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 4610454 | 4611969 | 4610454 | ID=MS.gene050437 |
| chr7.1 | mRNA | 4610454 | 4611969 | 4610454 | ID=MS.gene050437.t1;Parent=MS.gene050437 |
| chr7.1 | exon | 4611844 | 4611969 | 4611844 | ID=MS.gene050437.t1.exon1;Parent=MS.gene050437.t1 |
| chr7.1 | CDS | 4611844 | 4611969 | 4611844 | ID=cds.MS.gene050437.t1;Parent=MS.gene050437.t1 |
| chr7.1 | exon | 4611637 | 4611711 | 4611637 | ID=MS.gene050437.t1.exon2;Parent=MS.gene050437.t1 |
| chr7.1 | CDS | 4611637 | 4611711 | 4611637 | ID=cds.MS.gene050437.t1;Parent=MS.gene050437.t1 |
| chr7.1 | exon | 4610454 | 4610615 | 4610454 | ID=MS.gene050437.t1.exon3;Parent=MS.gene050437.t1 |
| chr7.1 | CDS | 4610454 | 4610615 | 4610454 | ID=cds.MS.gene050437.t1;Parent=MS.gene050437.t1 |
| Gene Sequence |
| Protein sequence |
