Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35536.t1 | XP_003605842.2 | 98.7 | 458 | 6 | 0 | 1 | 458 | 1 | 458 | 3.20E-260 | 907.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35536.t1 | O22216 | 84.0 | 450 | 72 | 0 | 7 | 456 | 12 | 461 | 1.6e-220 | 766.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35536.t1 | G7JUR3 | 98.7 | 458 | 6 | 0 | 1 | 458 | 1 | 458 | 2.3e-260 | 907.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054343 | MS.gene35536 | -0.841632 | 4.22E-58 | -1.69E-46 |
| MS.gene054344 | MS.gene35536 | -0.817122 | 3.89E-52 | -1.69E-46 |
| MS.gene057195 | MS.gene35536 | 0.814612 | 1.41E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35536.t1 | MTR_4g043650 | 98.690 | 458 | 6 | 0 | 1 | 458 | 1 | 458 | 0.0 | 932 |
| MS.gene35536.t1 | MTR_7g090970 | 84.444 | 450 | 70 | 0 | 8 | 457 | 8 | 457 | 0.0 | 797 |
| MS.gene35536.t1 | MTR_7g090970 | 85.366 | 410 | 60 | 0 | 8 | 417 | 8 | 417 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35536.t1 | AT2G41540 | 84.000 | 450 | 72 | 0 | 7 | 456 | 12 | 461 | 0.0 | 770 |
| MS.gene35536.t1 | AT2G41540 | 84.000 | 450 | 72 | 0 | 7 | 456 | 12 | 461 | 0.0 | 770 |
| MS.gene35536.t1 | AT2G41540 | 84.000 | 450 | 72 | 0 | 7 | 456 | 12 | 461 | 0.0 | 770 |
| MS.gene35536.t1 | AT2G41540 | 84.000 | 450 | 72 | 0 | 7 | 456 | 12 | 461 | 0.0 | 770 |
| MS.gene35536.t1 | AT3G07690 | 82.955 | 440 | 75 | 0 | 19 | 458 | 17 | 456 | 0.0 | 769 |
| MS.gene35536.t1 | AT3G07690 | 81.111 | 450 | 75 | 1 | 19 | 458 | 17 | 466 | 0.0 | 760 |
| MS.gene35536.t1 | AT5G40610 | 26.988 | 415 | 217 | 20 | 30 | 426 | 48 | 394 | 7.35e-15 | 76.6 |
Find 110 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCTGTCATTATTTCTT+TGG | 0.246368 | 4.2:+63441063 | MS.gene35536:CDS |
| CATCATCAACTTTCCCCATT+AGG | 0.251148 | 4.2:-63440598 | None:intergenic |
| GGTTCTCTTCAAAGTGTAAA+TGG | 0.275107 | 4.2:+63440542 | MS.gene35536:CDS |
| ATCATCAACTTTCCCCATTA+GGG | 0.290579 | 4.2:-63440597 | None:intergenic |
| TATATAAAATACTAATATTA+AGG | 0.295699 | 4.2:+63442642 | MS.gene35536:CDS |
| TTGTGTTGGAGGTGGTGCTT+GGG | 0.318205 | 4.2:+63440637 | MS.gene35536:CDS |
| TTTGTGTTGGAGGTGGTGCT+TGG | 0.332168 | 4.2:+63440636 | MS.gene35536:CDS |
| ATTGAAAATATTCTCTATCT+TGG | 0.332464 | 4.2:+63441409 | MS.gene35536:CDS |
| GCTCTATCAACCGCTCTTCC+TGG | 0.341553 | 4.2:-63440737 | None:intergenic |
| TGATGCTGTCACCCATTTCA+AGG | 0.343219 | 4.2:-63442388 | None:intergenic |
| TCGAGGGGAGATTAGGTGAT+AGG | 0.347018 | 4.2:+63440846 | MS.gene35536:CDS |
| TGTCATTATTTCTTTGGCTA+AGG | 0.357253 | 4.2:+63441069 | MS.gene35536:CDS |
| CAAGGGCAAGGGGATGATTC+AGG | 0.359334 | 4.2:+63442409 | MS.gene35536:CDS |
| TTCAAGGCTCAATTCTCCTT+TGG | 0.370084 | 4.2:-63442372 | None:intergenic |
| AGAGGGCCTGCAAGTTTCTC+TGG | 0.371971 | 4.2:-63442287 | None:intergenic |
| TAAGGGTGTGGAGGCTGAAT+TGG | 0.382414 | 4.2:+63441087 | MS.gene35536:CDS |
| GAAGAACCAGAGAAACTTGC+AGG | 0.385116 | 4.2:+63442281 | MS.gene35536:CDS |
| TACACCTGTTTGCCCTTTGA+AGG | 0.390970 | 4.2:+63440922 | MS.gene35536:CDS |
| AGGAGAATTGAGCCTTGAAA+TGG | 0.391296 | 4.2:+63442376 | MS.gene35536:CDS |
| GAAGGTTGTGACGAATTTGC+AGG | 0.392149 | 4.2:+63440940 | MS.gene35536:CDS |
| ATGTGTTGAGGAGGTTGATT+AGG | 0.393435 | 4.2:+63440801 | MS.gene35536:CDS |
| TCTTGTTACTCATGAAGTTA+TGG | 0.394359 | 4.2:+63441564 | MS.gene35536:CDS |
| TTGAAGAAATTAGTAAGTAT+TGG | 0.395541 | 4.2:+63441026 | MS.gene35536:CDS |
| GTCATTATTTCTTTGGCTAA+GGG | 0.400519 | 4.2:+63441070 | MS.gene35536:CDS |
| GATGAGCTTAGAACCCTAAT+GGG | 0.411719 | 4.2:+63440584 | MS.gene35536:CDS |
| TATTTCTTTGGCTAAGGGTG+TGG | 0.412534 | 4.2:+63441075 | MS.gene35536:CDS |
| TGATGAGCTTAGAACCCTAA+TGG | 0.413049 | 4.2:+63440583 | MS.gene35536:CDS |
| TTAAAGAATGTATATGCAAT+TGG | 0.421984 | 4.2:+63441592 | MS.gene35536:CDS |
| CTTGTTACTCATGAAGTTAT+GGG | 0.422177 | 4.2:+63441565 | MS.gene35536:CDS |
| CGAATTTGCAGGAAGCTGTA+TGG | 0.426348 | 4.2:+63440951 | MS.gene35536:CDS |
| AAATATGTCGAGGGGAGATT+AGG | 0.426665 | 4.2:+63440839 | MS.gene35536:CDS |
| TAAATCTCGGAGGCAATGTT+AGG | 0.432930 | 4.2:-63441436 | None:intergenic |
| GGTGTTATGATCCGCGGCTC+AGG | 0.435974 | 4.2:-63441112 | None:intergenic |
| AAGATGGGACAAAGCTCGAC+AGG | 0.442551 | 4.2:-63442611 | None:intergenic |
| ATATTCTTTGTTGTAAATCT+CGG | 0.448562 | 4.2:-63441449 | None:intergenic |
| GAAACTTGCAGGCCCTCTCT+TGG | 0.454109 | 4.2:+63442292 | MS.gene35536:CDS |
| GCTTGAAGTATAGCCTGTAC+TGG | 0.457035 | 4.2:-63443260 | None:intergenic |
| TTTATATAACATCTTCAAGA+TGG | 0.462752 | 4.2:-63442627 | None:intergenic |
| TTCTTTGGCTAAGGGTGTGG+AGG | 0.466579 | 4.2:+63441078 | MS.gene35536:CDS |
| ACAACCTTCAAAGGGCAAAC+AGG | 0.479400 | 4.2:-63440926 | None:intergenic |
| GAAAATATTCTCTATCTTGG+AGG | 0.480816 | 4.2:+63441412 | MS.gene35536:CDS |
| GCTATGTTACAAGAGGCTTA+TGG | 0.483493 | 4.2:+63440674 | MS.gene35536:CDS |
| GGGTGACAGCATCAAGGGCA+AGG | 0.485731 | 4.2:+63442397 | MS.gene35536:CDS |
| AGCAAAGTAGACTGATTTGC+TGG | 0.487927 | 4.2:-63442216 | None:intergenic |
| GGCTCTGAGCAATCTTAATA+CGG | 0.496152 | 4.2:-63443316 | None:intergenic |
| ACGGTCTCGAGGATCATTCA+TGG | 0.497246 | 4.2:-63443297 | None:intergenic |
| TTGAGAATAGTTTGTGTTGG+AGG | 0.502821 | 4.2:+63440626 | MS.gene35536:CDS |
| TTATATAACATCTTCAAGAT+GGG | 0.503001 | 4.2:-63442626 | None:intergenic |
| AACCATCATGGATACTCAAA+TGG | 0.503751 | 4.2:+63440521 | MS.gene35536:CDS |
| AAATTCGTCACAACCTTCAA+AGG | 0.506986 | 4.2:-63440935 | None:intergenic |
| TAATTTCTTCAAACACCTCA+CGG | 0.507384 | 4.2:-63441015 | None:intergenic |
| AATGTATATGCAATTGGAGC+AGG | 0.513242 | 4.2:+63441598 | MS.gene35536:CDS |
| GTTTGAAGTGATTAATTCGA+GGG | 0.516179 | 4.2:+63440775 | MS.gene35536:CDS |
| CCAACACAAACTATTCTCAA+TGG | 0.516452 | 4.2:-63440623 | None:intergenic |
| AAAGGTCGTAATGCATGGTA+TGG | 0.519099 | 4.2:+63442338 | MS.gene35536:CDS |
| GGAGAATTGAGCCTTGAAAT+GGG | 0.522487 | 4.2:+63442377 | MS.gene35536:CDS |
| TATGCAAATGCTCGAATATG+TGG | 0.524238 | 4.2:+63441469 | MS.gene35536:CDS |
| CTTCAGGGAATCTCCAGTAC+AGG | 0.526916 | 4.2:+63443247 | MS.gene35536:intron |
| AGGATCTAAGACATTTAAGC+TGG | 0.528053 | 4.2:-63442567 | None:intergenic |
| ACCTCACGGGTTTCTGTCGA+TGG | 0.528482 | 4.2:-63441001 | None:intergenic |
| TGCATGGTATGGACAAAAGT+TGG | 0.531855 | 4.2:+63442349 | MS.gene35536:CDS |
| GGTGACAGCATCAAGGGCAA+GGG | 0.540284 | 4.2:+63442398 | MS.gene35536:CDS |
| AATTTCTTCAAACACCTCAC+GGG | 0.548801 | 4.2:-63441014 | None:intergenic |
| CGAGGGGAGATTAGGTGATA+GGG | 0.549275 | 4.2:+63440847 | MS.gene35536:CDS |
| CCATTGAGAATAGTTTGTGT+TGG | 0.551150 | 4.2:+63440623 | MS.gene35536:CDS |
| GGCTGCTGACCAAGAAGAGA+TGG | 0.553433 | 4.2:-63443353 | None:intergenic |
| AGAATAGTTTGTGTTGGAGG+TGG | 0.557952 | 4.2:+63440629 | MS.gene35536:CDS |
| TGAAATGGGTGACAGCATCA+AGG | 0.560053 | 4.2:+63442391 | MS.gene35536:CDS |
| TGTGTTGGAGGTGGTGCTTG+GGG | 0.568789 | 4.2:+63440638 | MS.gene35536:CDS |
| ACTTATGTAACCTTGTTGAA+AGG | 0.569017 | 4.2:+63442320 | MS.gene35536:CDS |
| AATTCGTCACAACCTTCAAA+GGG | 0.569811 | 4.2:-63440934 | None:intergenic |
| GAAATGGGTGACAGCATCAA+GGG | 0.570576 | 4.2:+63442392 | MS.gene35536:CDS |
| TGAAGTGATTAATTCGAGGG+AGG | 0.572910 | 4.2:+63440778 | MS.gene35536:CDS |
| TGTTTGAAGTGATTAATTCG+AGG | 0.574810 | 4.2:+63440774 | MS.gene35536:CDS |
| GAATTTGCAGGAAGCTGTAT+GGG | 0.578928 | 4.2:+63440952 | MS.gene35536:CDS |
| GGCAGGCGCACTTTATAGTG+TGG | 0.581523 | 4.2:+63441530 | MS.gene35536:CDS |
| GTGACAGCATCAAGGGCAAG+GGG | 0.585669 | 4.2:+63442399 | MS.gene35536:CDS |
| AACCATTTGAGTATCCATGA+TGG | 0.585718 | 4.2:-63440523 | None:intergenic |
| GTTTACAGCTATGTTACAAG+AGG | 0.586719 | 4.2:+63440667 | MS.gene35536:CDS |
| GGATCAAAGATGAACCATCA+TGG | 0.587501 | 4.2:+63440509 | None:intergenic |
| CGAGGGAGGATGTGTTGAGG+AGG | 0.589261 | 4.2:+63440792 | MS.gene35536:CDS |
| TGTTGAAAGGTCGTAATGCA+TGG | 0.592104 | 4.2:+63442333 | MS.gene35536:CDS |
| GTTACTCATGAAGTTATGGG+TGG | 0.597858 | 4.2:+63441568 | MS.gene35536:CDS |
| TTCAAACAAATGCGTAGCCG+TGG | 0.598990 | 4.2:-63440759 | None:intergenic |
| TTAGCCAAAGAAATAATGAC+AGG | 0.600030 | 4.2:-63441067 | None:intergenic |
| ATTAGGATATGGAGAAGACC+AGG | 0.601604 | 4.2:+63440719 | MS.gene35536:CDS |
| TGCGTATTTGAAATATGTCG+AGG | 0.602106 | 4.2:+63440829 | MS.gene35536:CDS |
| GCAGGCGCACTTTATAGTGT+GGG | 0.609902 | 4.2:+63441531 | MS.gene35536:CDS |
| CTGAATTGGTTCCTGAGCCG+CGG | 0.610242 | 4.2:+63441101 | MS.gene35536:CDS |
| GCGTATTTGAAATATGTCGA+GGG | 0.611600 | 4.2:+63440830 | MS.gene35536:CDS |
| AGATGGGACAAAGCTCGACA+GGG | 0.616695 | 4.2:-63442610 | None:intergenic |
| TTCTTTGTTGTAAATCTCGG+AGG | 0.618426 | 4.2:-63441446 | None:intergenic |
| CATAAGTATCAGCCAAGAGA+GGG | 0.625499 | 4.2:-63442304 | None:intergenic |
| ACATAAGTATCAGCCAAGAG+AGG | 0.630335 | 4.2:-63442305 | None:intergenic |
| TGCATTACGACCTTTCAACA+AGG | 0.634314 | 4.2:-63442330 | None:intergenic |
| GCTGACCAAGAAGAGATGGC+CGG | 0.634478 | 4.2:-63443349 | None:intergenic |
| ATTCGAGGGAGGATGTGTTG+AGG | 0.636238 | 4.2:+63440789 | MS.gene35536:CDS |
| AGCGTAGGTGTTATGATCCG+CGG | 0.638818 | 4.2:-63441118 | None:intergenic |
| TATGGACAAAAGTTGGCCAA+AGG | 0.655927 | 4.2:+63442356 | MS.gene35536:CDS |
| ATGGAGAAGACCAGGAAGAG+CGG | 0.661540 | 4.2:+63440727 | MS.gene35536:CDS |
| GCTCGACTGATCATTAGCGT+AGG | 0.663687 | 4.2:-63441133 | None:intergenic |
| CGTATTTGAAATATGTCGAG+GGG | 0.666107 | 4.2:+63440831 | MS.gene35536:CDS |
| GAGATGGCCGGTAAAACACA+TGG | 0.670898 | 4.2:-63443337 | None:intergenic |
| ATGAGCTTAGAACCCTAATG+GGG | 0.672787 | 4.2:+63440585 | MS.gene35536:CDS |
| GCAATCTTAATACGGTCTCG+AGG | 0.679304 | 4.2:-63443308 | None:intergenic |
| AAGAGCGGTTGATAGAGCCA+CGG | 0.687252 | 4.2:+63440742 | MS.gene35536:CDS |
| GATGGGACAAAGCTCGACAG+GGG | 0.689704 | 4.2:-63442609 | None:intergenic |
| AAAGTAGACTGATTTGCTGG+TGG | 0.693461 | 4.2:-63442213 | None:intergenic |
| GATGCTGACATTGTGATCAA+CGG | 0.725021 | 4.2:+63440974 | MS.gene35536:CDS |
| GCCATCGACAGAAACCCGTG+AGG | 0.775448 | 4.2:+63441000 | MS.gene35536:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTTAAAATTTCATTTT+GGG | + | chr4.2:63441975-63441994 | MS.gene35536:intron | 10.0% |
| !! | TTGAAAAACAATAAATTTCA+TGG | - | chr4.2:63441231-63441250 | None:intergenic | 15.0% |
| !!! | CATTGTTTAAAATTTCATTT+TGG | + | chr4.2:63441974-63441993 | MS.gene35536:intron | 15.0% |
| !! | AGAAACTAAAATCAAATCAA+GGG | - | chr4.2:63441344-63441363 | None:intergenic | 20.0% |
| !! | AGTTCAATAATATTTCCAAT+TGG | - | chr4.2:63443050-63443069 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCTCTATCT+TGG | + | chr4.2:63441409-63441428 | MS.gene35536:CDS | 20.0% |
| !! | TATAAACAACAATTGAATGT+AGG | - | chr4.2:63441801-63441820 | None:intergenic | 20.0% |
| !! | TTAAAGAATGTATATGCAAT+TGG | + | chr4.2:63441592-63441611 | MS.gene35536:CDS | 20.0% |
| !! | TTATATAACATCTTCAAGAT+GGG | - | chr4.2:63442629-63442648 | None:intergenic | 20.0% |
| !! | TTGAAGAAATTAGTAAGTAT+TGG | + | chr4.2:63441026-63441045 | MS.gene35536:CDS | 20.0% |
| !! | TTTATATAACATCTTCAAGA+TGG | - | chr4.2:63442630-63442649 | None:intergenic | 20.0% |
| !!! | AAGATAGAGAATATTTTCAA+TGG | - | chr4.2:63441410-63441429 | None:intergenic | 20.0% |
| !!! | AGATAGAGAATATTTTCAAT+GGG | - | chr4.2:63441409-63441428 | None:intergenic | 20.0% |
| !!! | ATATTCTTTGTTGTAAATCT+CGG | - | chr4.2:63441452-63441471 | None:intergenic | 20.0% |
| !!! | TATGTAACTAACTTTTTCTT+TGG | + | chr4.2:63443202-63443221 | MS.gene35536:intron | 20.0% |
| ! | AAAATTCATAAAAGGATTGC+TGG | - | chr4.2:63442773-63442792 | None:intergenic | 25.0% |
| ! | AAACAATAAATTTCATGGTG+TGG | - | chr4.2:63441226-63441245 | None:intergenic | 25.0% |
| ! | AACTCAATTGTTTATTCTTC+AGG | + | chr4.2:63443066-63443085 | MS.gene35536:intron | 25.0% |
| ! | CAGAAACTAAAATCAAATCA+AGG | - | chr4.2:63441345-63441364 | None:intergenic | 25.0% |
| ! | CAGTTGAAATTTCATTTAAG+AGG | + | chr4.2:63441772-63441791 | MS.gene35536:intron | 25.0% |
| ! | GAAAAAGTTAGTTACATAAC+TGG | - | chr4.2:63443200-63443219 | None:intergenic | 25.0% |
| ! | GCAATTATATCAAATAAGAC+AGG | - | chr4.2:63441753-63441772 | None:intergenic | 25.0% |
| ! | GTTGGAACAAAATTCATAAA+AGG | - | chr4.2:63442781-63442800 | None:intergenic | 25.0% |
| ! | TTACTAATAGAGATCTTATG+TGG | + | chr4.2:63443145-63443164 | MS.gene35536:intron | 25.0% |
| !! | ATTTCATTCAAGTTTCTACT+TGG | + | chr4.2:63442461-63442480 | MS.gene35536:intron | 25.0% |
| !! | GATAGAGAATATTTTCAATG+GGG | - | chr4.2:63441408-63441427 | None:intergenic | 25.0% |
| !! | GATTTTTATCACTCATCTAT+TGG | + | chr4.2:63442256-63442275 | MS.gene35536:CDS | 25.0% |
| !! | TCATTAGTTTCTTTATGTTG+TGG | + | chr4.2:63441181-63441200 | MS.gene35536:intron | 25.0% |
| !! | TGTTTTGCCAGATATTATTT+GGG | + | chr4.2:63441877-63441896 | MS.gene35536:intron | 25.0% |
| !! | TTATGATGATCGATTTAACA+GGG | + | chr4.2:63442162-63442181 | MS.gene35536:intron | 25.0% |
| !! | TTTATGATGATCGATTTAAC+AGG | + | chr4.2:63442161-63442180 | MS.gene35536:intron | 25.0% |
| !!! | CTTGATTTGATTTTAGTTTC+TGG | + | chr4.2:63441343-63441362 | MS.gene35536:intron | 25.0% |
| !!! | TAAAAGGTGCATTTTAACTA+AGG | - | chr4.2:63442872-63442891 | None:intergenic | 25.0% |
| !!! | TTGTTTTGCCAGATATTATT+TGG | + | chr4.2:63441876-63441895 | MS.gene35536:intron | 25.0% |
| !!! | TTTTCTTTGGTTTTGATTTG+TGG | + | chr4.2:63443215-63443234 | MS.gene35536:intron | 25.0% |
| ACTTATGTAACCTTGTTGAA+AGG | + | chr4.2:63442320-63442339 | MS.gene35536:CDS | 30.0% | |
| CACACATAAATAACATCAAG+AGG | - | chr4.2:63442060-63442079 | None:intergenic | 30.0% | |
| CTTGTTACTCATGAAGTTAT+GGG | + | chr4.2:63441565-63441584 | MS.gene35536:CDS | 30.0% | |
| GAAAATATTCTCTATCTTGG+AGG | + | chr4.2:63441412-63441431 | MS.gene35536:CDS | 30.0% | |
| GTAATCATGTTACATATGCA+GGG | + | chr4.2:63443119-63443138 | MS.gene35536:intron | 30.0% | |
| TAATTTCTTCAAACACCTCA+CGG | - | chr4.2:63441018-63441037 | None:intergenic | 30.0% | |
| TCTTGTTACTCATGAAGTTA+TGG | + | chr4.2:63441564-63441583 | MS.gene35536:CDS | 30.0% | |
| TGTAATCATGTTACATATGC+AGG | + | chr4.2:63443118-63443137 | MS.gene35536:intron | 30.0% | |
| TTAGCCAAAGAAATAATGAC+AGG | - | chr4.2:63441070-63441089 | None:intergenic | 30.0% | |
| TTTAACTAAGGACAAAACTG+TGG | - | chr4.2:63442860-63442879 | None:intergenic | 30.0% | |
| ! | AGTTCCTGTCATTATTTCTT+TGG | + | chr4.2:63441063-63441082 | MS.gene35536:CDS | 30.0% |
| ! | CTTTGGGTTCAGATAAATTT+AGG | + | chr4.2:63442964-63442983 | MS.gene35536:intron | 30.0% |
| ! | GTCATTATTTCTTTGGCTAA+GGG | + | chr4.2:63441070-63441089 | MS.gene35536:CDS | 30.0% |
| ! | GTTTGAAGTGATTAATTCGA+GGG | + | chr4.2:63440775-63440794 | MS.gene35536:CDS | 30.0% |
| ! | TGTCATTATTTCTTTGGCTA+AGG | + | chr4.2:63441069-63441088 | MS.gene35536:CDS | 30.0% |
| ! | TGTTTGAAGTGATTAATTCG+AGG | + | chr4.2:63440774-63440793 | MS.gene35536:CDS | 30.0% |
| !! | CAAATCTGGCTTTAGTTAAA+AGG | - | chr4.2:63442888-63442907 | None:intergenic | 30.0% |
| !! | CAGATGAGATTTTGAAAGAT+GGG | + | chr4.2:63440879-63440898 | MS.gene35536:CDS | 30.0% |
| !!! | ACAAGGTTTTGATTAGGATA+TGG | + | chr4.2:63440708-63440727 | MS.gene35536:CDS | 30.0% |
| !!! | AGATGGGTTTTGTTTGAATA+TGG | + | chr4.2:63440895-63440914 | MS.gene35536:CDS | 30.0% |
| !!! | GGATTTAGTTTTGATTTTGC+AGG | - | chr4.2:63443179-63443198 | None:intergenic | 30.0% |
| !!! | TTAGAGACAAGGTTTTGATT+AGG | + | chr4.2:63440702-63440721 | MS.gene35536:CDS | 30.0% |
| !!! | TTATGGTAGTTTTAGAGACA+AGG | + | chr4.2:63440691-63440710 | MS.gene35536:CDS | 30.0% |
| AAATTCGTCACAACCTTCAA+AGG | - | chr4.2:63440938-63440957 | None:intergenic | 35.0% | |
| AACCATCATGGATACTCAAA+TGG | + | chr4.2:63440521-63440540 | MS.gene35536:CDS | 35.0% | |
| AACCATTTGAGTATCCATGA+TGG | - | chr4.2:63440526-63440545 | None:intergenic | 35.0% | |
| AACTAAAGCCAGATTTGTGT+GGG | + | chr4.2:63442891-63442910 | MS.gene35536:intron | 35.0% | |
| AATGTATATGCAATTGGAGC+AGG | + | chr4.2:63441598-63441617 | MS.gene35536:CDS | 35.0% | |
| AATTCGTCACAACCTTCAAA+GGG | - | chr4.2:63440937-63440956 | None:intergenic | 35.0% | |
| AATTTCTTCAAACACCTCAC+GGG | - | chr4.2:63441017-63441036 | None:intergenic | 35.0% | |
| AGAAAAATGGAGGAAACCAT+TGG | + | chr4.2:63441495-63441514 | MS.gene35536:CDS | 35.0% | |
| ATAATATTTCCAATTGGCGC+AGG | - | chr4.2:63443044-63443063 | None:intergenic | 35.0% | |
| ATCATCAACTTTCCCCATTA+GGG | - | chr4.2:63440600-63440619 | None:intergenic | 35.0% | |
| ATTCATAAAAGGATTGCTGG+AGG | - | chr4.2:63442770-63442789 | None:intergenic | 35.0% | |
| CCAACACAAACTATTCTCAA+TGG | - | chr4.2:63440626-63440645 | None:intergenic | 35.0% | |
| GAATATGTGGAGCAGAAAAA+TGG | + | chr4.2:63441482-63441501 | MS.gene35536:CDS | 35.0% | |
| GGTTCTCTTCAAAGTGTAAA+TGG | + | chr4.2:63440542-63440561 | MS.gene35536:CDS | 35.0% | |
| GTTTACAGCTATGTTACAAG+AGG | + | chr4.2:63440667-63440686 | MS.gene35536:CDS | 35.0% | |
| TAACTAAAGCCAGATTTGTG+TGG | + | chr4.2:63442890-63442909 | MS.gene35536:intron | 35.0% | |
| TATGCAAATGCTCGAATATG+TGG | + | chr4.2:63441469-63441488 | MS.gene35536:CDS | 35.0% | |
| TCTATGATATCGTACGCTTT+AGG | + | chr4.2:63442823-63442842 | MS.gene35536:intron | 35.0% | |
| TTCATAAAAGGATTGCTGGA+GGG | - | chr4.2:63442769-63442788 | None:intergenic | 35.0% | |
| TTGATATTATGCTTTGCAGC+TGG | + | chr4.2:63441379-63441398 | MS.gene35536:intron | 35.0% | |
| TTGCCAGATATTATTTGGGA+GGG | + | chr4.2:63441881-63441900 | MS.gene35536:intron | 35.0% | |
| TTTGCCAGATATTATTTGGG+AGG | + | chr4.2:63441880-63441899 | MS.gene35536:intron | 35.0% | |
| ! | AACCATTGGCAAAGTTTTTG+AGG | + | chr4.2:63441509-63441528 | MS.gene35536:CDS | 35.0% |
| ! | AGGATCTAAGACATTTAAGC+TGG | - | chr4.2:63442570-63442589 | None:intergenic | 35.0% |
| ! | ATTTTGCCTTCCATCTTGTA+GGG | + | chr4.2:63442503-63442522 | MS.gene35536:intron | 35.0% |
| ! | CCATTGAGAATAGTTTGTGT+TGG | + | chr4.2:63440623-63440642 | MS.gene35536:CDS | 35.0% |
| ! | CGTATTTGAAATATGTCGAG+GGG | + | chr4.2:63440831-63440850 | MS.gene35536:CDS | 35.0% |
| ! | CTGTTTTCTCATTCAAAGAG+AGG | - | chr4.2:63442707-63442726 | None:intergenic | 35.0% |
| ! | GCGTATTTGAAATATGTCGA+GGG | + | chr4.2:63440830-63440849 | MS.gene35536:CDS | 35.0% |
| ! | TATTTTGCCTTCCATCTTGT+AGG | + | chr4.2:63442502-63442521 | MS.gene35536:intron | 35.0% |
| ! | TGCGTATTTGAAATATGTCG+AGG | + | chr4.2:63440829-63440848 | MS.gene35536:CDS | 35.0% |
| ! | TTCTTTGTTGTAAATCTCGG+AGG | - | chr4.2:63441449-63441468 | None:intergenic | 35.0% |
| ! | TTGAGAATAGTTTGTGTTGG+AGG | + | chr4.2:63440626-63440645 | MS.gene35536:CDS | 35.0% |
| !! | AAGTGTCGTTCTTTTAAGCT+AGG | - | chr4.2:63441950-63441969 | None:intergenic | 35.0% |
| !! | GCAGATGAGATTTTGAAAGA+TGG | + | chr4.2:63440878-63440897 | MS.gene35536:CDS | 35.0% |
| !! | TCGAAGGTATTATCTGCTTT+GGG | - | chr4.2:63442928-63442947 | None:intergenic | 35.0% |
| !! | TTCGAAGGTATTATCTGCTT+TGG | - | chr4.2:63442929-63442948 | None:intergenic | 35.0% |
| AAAGGTCGTAATGCATGGTA+TGG | + | chr4.2:63442338-63442357 | MS.gene35536:CDS | 40.0% | |
| AAATATGTCGAGGGGAGATT+AGG | + | chr4.2:63440839-63440858 | MS.gene35536:CDS | 40.0% | |
| AACATGCATTCAAATGCTCG+AGG | - | chr4.2:63441265-63441284 | None:intergenic | 40.0% | |
| ACATAAGTATCAGCCAAGAG+AGG | - | chr4.2:63442308-63442327 | None:intergenic | 40.0% | |
| ACATGCATTCAAATGCTCGA+GGG | - | chr4.2:63441264-63441283 | None:intergenic | 40.0% | |
| AGGAGAATTGAGCCTTGAAA+TGG | + | chr4.2:63442376-63442395 | MS.gene35536:CDS | 40.0% | |
| ATGAGCTTAGAACCCTAATG+GGG | + | chr4.2:63440585-63440604 | MS.gene35536:CDS | 40.0% | |
| ATTAGGATATGGAGAAGACC+AGG | + | chr4.2:63440719-63440738 | MS.gene35536:CDS | 40.0% | |
| CATAAGTATCAGCCAAGAGA+GGG | - | chr4.2:63442307-63442326 | None:intergenic | 40.0% | |
| CATCATCAACTTTCCCCATT+AGG | - | chr4.2:63440601-63440620 | None:intergenic | 40.0% | |
| GAATTTGCAGGAAGCTGTAT+GGG | + | chr4.2:63440952-63440971 | MS.gene35536:CDS | 40.0% | |
| GATGAGCTTAGAACCCTAAT+GGG | + | chr4.2:63440584-63440603 | MS.gene35536:CDS | 40.0% | |
| GATGCTGACATTGTGATCAA+CGG | + | chr4.2:63440974-63440993 | MS.gene35536:CDS | 40.0% | |
| GCTATGTTACAAGAGGCTTA+TGG | + | chr4.2:63440674-63440693 | MS.gene35536:CDS | 40.0% | |
| GGAGAATTGAGCCTTGAAAT+GGG | + | chr4.2:63442377-63442396 | MS.gene35536:CDS | 40.0% | |
| GTTACTCATGAAGTTATGGG+TGG | + | chr4.2:63441568-63441587 | MS.gene35536:CDS | 40.0% | |
| TAAATCTCGGAGGCAATGTT+AGG | - | chr4.2:63441439-63441458 | None:intergenic | 40.0% | |
| TAGCCCTCCCAAATAATATC+TGG | - | chr4.2:63441887-63441906 | None:intergenic | 40.0% | |
| TATGGACAAAAGTTGGCCAA+AGG | + | chr4.2:63442356-63442375 | MS.gene35536:CDS | 40.0% | |
| TATGTGGAGCAGAAAAATGG+AGG | + | chr4.2:63441485-63441504 | MS.gene35536:CDS | 40.0% | |
| TATTTCTTTGGCTAAGGGTG+TGG | + | chr4.2:63441075-63441094 | MS.gene35536:CDS | 40.0% | |
| TGAAGTGATTAATTCGAGGG+AGG | + | chr4.2:63440778-63440797 | MS.gene35536:CDS | 40.0% | |
| TGATGAGCTTAGAACCCTAA+TGG | + | chr4.2:63440583-63440602 | MS.gene35536:CDS | 40.0% | |
| TGCATGGTATGGACAAAAGT+TGG | + | chr4.2:63442349-63442368 | MS.gene35536:CDS | 40.0% | |
| TGCATTACGACCTTTCAACA+AGG | - | chr4.2:63442333-63442352 | None:intergenic | 40.0% | |
| TGCCTCAAAAACTTTGCCAA+TGG | - | chr4.2:63441514-63441533 | None:intergenic | 40.0% | |
| TGTTGAAAGGTCGTAATGCA+TGG | + | chr4.2:63442333-63442352 | MS.gene35536:CDS | 40.0% | |
| TTCAAGGCTCAATTCTCCTT+TGG | - | chr4.2:63442375-63442394 | None:intergenic | 40.0% | |
| TTGTGGACCTCTTATCTTCA+GGG | + | chr4.2:63443232-63443251 | MS.gene35536:intron | 40.0% | |
| TTTGTGGACCTCTTATCTTC+AGG | + | chr4.2:63443231-63443250 | MS.gene35536:intron | 40.0% | |
| ! | AAAAACCGTTCAGTGGACTT+TGG | + | chr4.2:63442947-63442966 | MS.gene35536:intron | 40.0% |
| ! | AAAACCGTTCAGTGGACTTT+GGG | + | chr4.2:63442948-63442967 | MS.gene35536:intron | 40.0% |
| ! | AGAATAGTTTGTGTTGGAGG+TGG | + | chr4.2:63440629-63440648 | MS.gene35536:CDS | 40.0% |
| ! | ATGTGTTGAGGAGGTTGATT+AGG | + | chr4.2:63440801-63440820 | MS.gene35536:CDS | 40.0% |
| ! | GATGATCGATTTAACAGGGA+TGG | + | chr4.2:63442166-63442185 | MS.gene35536:intron | 40.0% |
| !! | AAAGTAGACTGATTTGCTGG+TGG | - | chr4.2:63442216-63442235 | None:intergenic | 40.0% |
| !! | AGCAAAGTAGACTGATTTGC+TGG | - | chr4.2:63442219-63442238 | None:intergenic | 40.0% |
| !! | GCAACATGCTTGTTTTCATC+AGG | - | chr4.2:63442590-63442609 | None:intergenic | 40.0% |
| !! | GGCTCTGAGCAATCTTAATA+CGG | - | chr4.2:63443319-63443338 | None:intergenic | 40.0% |
| !!! | ATTGGCAAAGTTTTTGAGGC+AGG | + | chr4.2:63441513-63441532 | MS.gene35536:CDS | 40.0% |
| AACAGCAGTTCAACAGACTC+GGG | - | chr4.2:63442804-63442823 | None:intergenic | 45.0% | |
| ACAACCTTCAAAGGGCAAAC+AGG | - | chr4.2:63440929-63440948 | None:intergenic | 45.0% | |
| ACCTTCGAAAAACCGTTCAG+TGG | + | chr4.2:63442940-63442959 | MS.gene35536:intron | 45.0% | |
| CAGGAGCTTAACAGTTAGGT+AGG | - | chr4.2:63443025-63443044 | None:intergenic | 45.0% | |
| CGAATTTGCAGGAAGCTGTA+TGG | + | chr4.2:63440951-63440970 | MS.gene35536:CDS | 45.0% | |
| GAAATGGGTGACAGCATCAA+GGG | + | chr4.2:63442392-63442411 | MS.gene35536:CDS | 45.0% | |
| GAACAGCAGTTCAACAGACT+CGG | - | chr4.2:63442805-63442824 | None:intergenic | 45.0% | |
| GAAGAACCAGAGAAACTTGC+AGG | + | chr4.2:63442281-63442300 | MS.gene35536:CDS | 45.0% | |
| GAAGGTTGTGACGAATTTGC+AGG | + | chr4.2:63440940-63440959 | MS.gene35536:CDS | 45.0% | |
| GCAATCTTAATACGGTCTCG+AGG | - | chr4.2:63443311-63443330 | None:intergenic | 45.0% | |
| GCTTGAAGTATAGCCTGTAC+TGG | - | chr4.2:63443263-63443282 | None:intergenic | 45.0% | |
| GGAGATTCCCTGAAGATAAG+AGG | - | chr4.2:63443242-63443261 | None:intergenic | 45.0% | |
| GGAGGGCTAAAAGATTAGAG+GGG | + | chr4.2:63441898-63441917 | MS.gene35536:intron | 45.0% | |
| GGGAGGGCTAAAAGATTAGA+GGG | + | chr4.2:63441897-63441916 | MS.gene35536:intron | 45.0% | |
| TACACCTGTTTGCCCTTTGA+AGG | + | chr4.2:63440922-63440941 | MS.gene35536:CDS | 45.0% | |
| TGAAATGGGTGACAGCATCA+AGG | + | chr4.2:63442391-63442410 | MS.gene35536:CDS | 45.0% | |
| TGAACCCAAAGTCCACTGAA+CGG | - | chr4.2:63442955-63442974 | None:intergenic | 45.0% | |
| TGATGCTGTCACCCATTTCA+AGG | - | chr4.2:63442391-63442410 | None:intergenic | 45.0% | |
| TGGGAGGGCTAAAAGATTAG+AGG | + | chr4.2:63441896-63441915 | MS.gene35536:intron | 45.0% | |
| TGTGTAAGCCCACACAAATC+TGG | - | chr4.2:63442902-63442921 | None:intergenic | 45.0% | |
| TTCAAACAAATGCGTAGCCG+TGG | - | chr4.2:63440762-63440781 | None:intergenic | 45.0% | |
| ! | CAGATGAACCTGAGCTTTAG+TGG | + | chr4.2:63442724-63442743 | MS.gene35536:intron | 45.0% |
| ! | CTCAGAGCCATGTGTTTTAC+CGG | + | chr4.2:63443330-63443349 | MS.gene35536:CDS | 45.0% |
| ! | TTTTACCGGCCATCTCTTCT+TGG | + | chr4.2:63443344-63443363 | MS.gene35536:CDS | 45.0% |
| !! | TCCACTGAACGGTTTTTCGA+AGG | - | chr4.2:63442944-63442963 | None:intergenic | 45.0% |
| !! | TATATAAAATACTAATATTA+AGG | + | chr4.2:63442642-63442661 | MS.gene35536:CDS | 5.0% |
| AAGATGGGACAAAGCTCGAC+AGG | - | chr4.2:63442614-63442633 | None:intergenic | 50.0% | |
| ACAGCAGTTCAACAGACTCG+GGG | - | chr4.2:63442803-63442822 | None:intergenic | 50.0% | |
| ACGGTCTCGAGGATCATTCA+TGG | - | chr4.2:63443300-63443319 | None:intergenic | 50.0% | |
| AGATGGGACAAAGCTCGACA+GGG | - | chr4.2:63442613-63442632 | None:intergenic | 50.0% | |
| AGCAGAGACTCCCTACAAGA+TGG | - | chr4.2:63442516-63442535 | None:intergenic | 50.0% | |
| ATGGAGAAGACCAGGAAGAG+CGG | + | chr4.2:63440727-63440746 | MS.gene35536:CDS | 50.0% | |
| ATTCGAGGGAGGATGTGTTG+AGG | + | chr4.2:63440789-63440808 | MS.gene35536:CDS | 50.0% | |
| CACTTGAGCCACTAAAGCTC+AGG | - | chr4.2:63442735-63442754 | None:intergenic | 50.0% | |
| CGAGGGGAGATTAGGTGATA+GGG | + | chr4.2:63440847-63440866 | MS.gene35536:CDS | 50.0% | |
| CTTCAGGGAATCTCCAGTAC+AGG | + | chr4.2:63443247-63443266 | MS.gene35536:intron | 50.0% | |
| GAGACTCCCTACAAGATGGA+AGG | - | chr4.2:63442512-63442531 | None:intergenic | 50.0% | |
| GAGATGGCCGGTAAAACACA+TGG | - | chr4.2:63443340-63443359 | None:intergenic | 50.0% | |
| GCAGGCGCACTTTATAGTGT+GGG | + | chr4.2:63441531-63441550 | MS.gene35536:CDS | 50.0% | |
| GCTCGACTGATCATTAGCGT+AGG | - | chr4.2:63441136-63441155 | None:intergenic | 50.0% | |
| TCGAGGGGAGATTAGGTGAT+AGG | + | chr4.2:63440846-63440865 | MS.gene35536:CDS | 50.0% | |
| TGTTAAGCTCCTGCGCCAAT+TGG | + | chr4.2:63443032-63443051 | MS.gene35536:intron | 50.0% | |
| TTGTGTTGGAGGTGGTGCTT+GGG | + | chr4.2:63440637-63440656 | MS.gene35536:CDS | 50.0% | |
| TTTGTGTTGGAGGTGGTGCT+TGG | + | chr4.2:63440636-63440655 | MS.gene35536:CDS | 50.0% | |
| ! | AGCGTAGGTGTTATGATCCG+CGG | - | chr4.2:63441121-63441140 | None:intergenic | 50.0% |
| ! | TAAGGGTGTGGAGGCTGAAT+TGG | + | chr4.2:63441087-63441106 | MS.gene35536:CDS | 50.0% |
| ! | TTCTTTGGCTAAGGGTGTGG+AGG | + | chr4.2:63441078-63441097 | MS.gene35536:CDS | 50.0% |
| !! | AAGAGCGGTTGATAGAGCCA+CGG | + | chr4.2:63440742-63440761 | MS.gene35536:CDS | 50.0% |
| ACCTCACGGGTTTCTGTCGA+TGG | - | chr4.2:63441004-63441023 | None:intergenic | 55.0% | |
| AGAGGGCCTGCAAGTTTCTC+TGG | - | chr4.2:63442290-63442309 | None:intergenic | 55.0% | |
| CAAGGGCAAGGGGATGATTC+AGG | + | chr4.2:63442409-63442428 | MS.gene35536:CDS | 55.0% | |
| CAGTTCAACAGACTCGGGGT+TGG | - | chr4.2:63442799-63442818 | None:intergenic | 55.0% | |
| GAAACTTGCAGGCCCTCTCT+TGG | + | chr4.2:63442292-63442311 | MS.gene35536:CDS | 55.0% | |
| GATGGGACAAAGCTCGACAG+GGG | - | chr4.2:63442612-63442631 | None:intergenic | 55.0% | |
| GCTCTATCAACCGCTCTTCC+TGG | - | chr4.2:63440740-63440759 | None:intergenic | 55.0% | |
| GCTGACCAAGAAGAGATGGC+CGG | - | chr4.2:63443352-63443371 | None:intergenic | 55.0% | |
| GGCAGGCGCACTTTATAGTG+TGG | + | chr4.2:63441530-63441549 | MS.gene35536:CDS | 55.0% | |
| GGCGCAGGAGCTTAACAGTT+AGG | - | chr4.2:63443029-63443048 | None:intergenic | 55.0% | |
| GGCTGCTGACCAAGAAGAGA+TGG | - | chr4.2:63443356-63443375 | None:intergenic | 55.0% | |
| GGTGACAGCATCAAGGGCAA+GGG | + | chr4.2:63442398-63442417 | MS.gene35536:CDS | 55.0% | |
| GTGACAGCATCAAGGGCAAG+GGG | + | chr4.2:63442399-63442418 | MS.gene35536:CDS | 55.0% | |
| TGTGTTGGAGGTGGTGCTTG+GGG | + | chr4.2:63440638-63440657 | MS.gene35536:CDS | 55.0% | |
| ! | CTGAATTGGTTCCTGAGCCG+CGG | + | chr4.2:63441101-63441120 | MS.gene35536:CDS | 55.0% |
| CGAGGGAGGATGTGTTGAGG+AGG | + | chr4.2:63440792-63440811 | MS.gene35536:CDS | 60.0% | |
| GCCATCGACAGAAACCCGTG+AGG | + | chr4.2:63441000-63441019 | MS.gene35536:CDS | 60.0% | |
| GGGTGACAGCATCAAGGGCA+AGG | + | chr4.2:63442397-63442416 | MS.gene35536:CDS | 60.0% | |
| ! | GGTGTTATGATCCGCGGCTC+AGG | - | chr4.2:63441115-63441134 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 63440518 | 63443379 | 63440518 | ID=MS.gene35536 |
| chr4.2 | mRNA | 63440518 | 63443379 | 63440518 | ID=MS.gene35536.t1;Parent=MS.gene35536 |
| chr4.2 | exon | 63440518 | 63441157 | 63440518 | ID=MS.gene35536.t1.exon1;Parent=MS.gene35536.t1 |
| chr4.2 | CDS | 63440518 | 63441157 | 63440518 | ID=cds.MS.gene35536.t1;Parent=MS.gene35536.t1 |
| chr4.2 | exon | 63441398 | 63441619 | 63441398 | ID=MS.gene35536.t1.exon2;Parent=MS.gene35536.t1 |
| chr4.2 | CDS | 63441398 | 63441619 | 63441398 | ID=cds.MS.gene35536.t1;Parent=MS.gene35536.t1 |
| chr4.2 | exon | 63442183 | 63442430 | 63442183 | ID=MS.gene35536.t1.exon3;Parent=MS.gene35536.t1 |
| chr4.2 | CDS | 63442183 | 63442430 | 63442183 | ID=cds.MS.gene35536.t1;Parent=MS.gene35536.t1 |
| chr4.2 | exon | 63442524 | 63442663 | 63442524 | ID=MS.gene35536.t1.exon4;Parent=MS.gene35536.t1 |
| chr4.2 | CDS | 63442524 | 63442663 | 63442524 | ID=cds.MS.gene35536.t1;Parent=MS.gene35536.t1 |
| chr4.2 | exon | 63443253 | 63443379 | 63443253 | ID=MS.gene35536.t1.exon5;Parent=MS.gene35536.t1 |
| chr4.2 | CDS | 63443253 | 63443379 | 63443253 | ID=cds.MS.gene35536.t1;Parent=MS.gene35536.t1 |
| Gene Sequence |
| Protein sequence |
