Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35603.t1 | XP_013460875.1 | 98.8 | 252 | 3 | 0 | 3 | 254 | 37 | 288 | 1.50E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35603.t1 | Q9SIE0 | 50.9 | 53 | 22 | 1 | 4 | 56 | 14 | 62 | 5.1e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35603.t1 | A0A072UYR5 | 98.8 | 252 | 3 | 0 | 3 | 254 | 37 | 288 | 1.1e-118 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053348 | MS.gene35603 | 0.810799 | 9.63E-51 | -1.69E-46 |
| MS.gene054999 | MS.gene35603 | 0.862133 | 6.29E-64 | -1.69E-46 |
| MS.gene055251 | MS.gene35603 | 0.80294 | 4.42E-49 | -1.69E-46 |
| MS.gene056266 | MS.gene35603 | -0.813813 | 2.12E-51 | -1.69E-46 |
| MS.gene056618 | MS.gene35603 | 0.800302 | 1.54E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35603.t1 | MTR_3g074260 | 98.810 | 252 | 3 | 0 | 3 | 254 | 37 | 288 | 0.0 | 498 |
| MS.gene35603.t1 | MTR_3g074260 | 100.000 | 216 | 0 | 0 | 39 | 254 | 1 | 216 | 1.58e-155 | 431 |
| MS.gene35603.t1 | MTR_3g074260 | 98.171 | 164 | 3 | 0 | 3 | 166 | 37 | 200 | 3.13e-114 | 326 |
| MS.gene35603.t1 | MTR_3g087250 | 59.328 | 268 | 90 | 5 | 3 | 254 | 35 | 299 | 2.04e-94 | 280 |
| MS.gene35603.t1 | MTR_0276s0040 | 48.897 | 272 | 110 | 8 | 2 | 251 | 31 | 295 | 2.95e-63 | 201 |
| MS.gene35603.t1 | MTR_3g036400 | 87.097 | 62 | 8 | 0 | 39 | 100 | 1 | 62 | 2.55e-30 | 108 |
| MS.gene35603.t1 | MTR_7g008860 | 84.211 | 57 | 9 | 0 | 39 | 95 | 1 | 57 | 3.22e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35603.t1 | AT1G78150 | 67.470 | 249 | 64 | 3 | 7 | 254 | 42 | 274 | 2.01e-109 | 317 |
| MS.gene35603.t1 | AT1G78150 | 67.470 | 249 | 64 | 3 | 7 | 254 | 42 | 274 | 2.01e-109 | 317 |
| MS.gene35603.t1 | AT1G35780 | 68.872 | 257 | 66 | 8 | 3 | 254 | 39 | 286 | 3.39e-107 | 311 |
| MS.gene35603.t1 | AT1G78150 | 60.432 | 278 | 64 | 4 | 7 | 254 | 42 | 303 | 6.17e-103 | 301 |
| MS.gene35603.t1 | AT4G39860 | 57.678 | 267 | 95 | 4 | 3 | 254 | 36 | 299 | 1.49e-95 | 282 |
| MS.gene35603.t1 | AT4G39860 | 57.678 | 267 | 95 | 4 | 3 | 254 | 36 | 299 | 1.49e-95 | 282 |
| MS.gene35603.t1 | AT4G39860 | 57.678 | 267 | 95 | 4 | 3 | 254 | 36 | 299 | 1.49e-95 | 282 |
| MS.gene35603.t1 | AT4G39860 | 57.303 | 267 | 95 | 5 | 3 | 254 | 36 | 298 | 6.15e-93 | 276 |
| MS.gene35603.t1 | AT1G35780 | 65.611 | 221 | 62 | 8 | 39 | 254 | 1 | 212 | 1.19e-82 | 246 |
| MS.gene35603.t1 | AT1G35780 | 65.611 | 221 | 62 | 8 | 39 | 254 | 1 | 212 | 1.19e-82 | 246 |
| MS.gene35603.t1 | AT1G35780 | 65.611 | 221 | 62 | 8 | 39 | 254 | 1 | 212 | 1.19e-82 | 246 |
| MS.gene35603.t1 | AT2G22270 | 43.046 | 302 | 117 | 13 | 3 | 254 | 32 | 328 | 1.17e-55 | 181 |
| MS.gene35603.t1 | AT2G22270 | 43.206 | 287 | 109 | 12 | 17 | 254 | 8 | 289 | 2.47e-53 | 174 |
Find 80 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACAGTTCTGCAAATTTC+TGG | 0.130552 | 3.3:-64124220 | None:intergenic |
| ATTGGCCGAGGCTTGATTTC+TGG | 0.202035 | 3.3:-64123744 | None:intergenic |
| GGGTTGGCACTGCCATCCTC+TGG | 0.241194 | 3.3:-64123364 | None:intergenic |
| TCCAATATGCGAGGAGTAAT+TGG | 0.251827 | 3.3:-64123762 | None:intergenic |
| GCCAATTACTCCTCGCATAT+TGG | 0.297633 | 3.3:+64123761 | MS.gene35603:CDS |
| TCAGGAAACAACATATTTAA+AGG | 0.318062 | 3.3:+64124239 | MS.gene35603:CDS |
| TAAGGTGGTGTTTGGTGGTC+AGG | 0.358985 | 3.3:+64122428 | MS.gene35603:CDS |
| GGGATCAGTAAGGTGGTGTT+TGG | 0.367307 | 3.3:+64122420 | MS.gene35603:CDS |
| TACCTGGTACATGCGAATTC+CGG | 0.380145 | 3.3:-64123401 | None:intergenic |
| GCGTGAGCTCAGTGGAACTA+TGG | 0.388798 | 3.3:+64123638 | MS.gene35603:CDS |
| TAAAGGCGACTCTCCACCTT+TGG | 0.396203 | 3.3:+64124256 | MS.gene35603:CDS |
| GGTTGGCACTGCCATCCTCT+GGG | 0.400803 | 3.3:-64123363 | None:intergenic |
| TCACGCTGCTTGGCCACCTC+AGG | 0.402765 | 3.3:-64123621 | None:intergenic |
| TATAAGATGAAGGAGATTAC+TGG | 0.435048 | 3.3:+64123304 | MS.gene35603:CDS |
| AAATTGCAGCAAGCTATTGC+GGG | 0.436764 | 3.3:+64123537 | MS.gene35603:intron |
| AATTTCTAGAAAGCCTTGTT+CGG | 0.448306 | 3.3:+64123279 | MS.gene35603:intron |
| GGAATCAGTCATATCTCCTT+TGG | 0.451670 | 3.3:+64123558 | MS.gene35603:CDS |
| CAGAAATTTGCAGAACTGTC+AGG | 0.455797 | 3.3:+64124221 | MS.gene35603:CDS |
| TGGGGCCTCATCTTCTCCAT+TGG | 0.457851 | 3.3:-64123344 | None:intergenic |
| TGTTACCTTGGTTAGGGTGA+TGG | 0.460687 | 3.3:+64124140 | MS.gene35603:intron |
| GCAATGCTGCTCTCGCCACC+AGG | 0.462130 | 3.3:-64124389 | None:intergenic |
| AACCCTTCAGCAAATAAAAC+CGG | 0.473858 | 3.3:+64123382 | MS.gene35603:CDS |
| GCAAAACTCCGAGAGATAAG+TGG | 0.475331 | 3.3:+64124302 | MS.gene35603:CDS |
| TCCACTGAGCTCACGCTGCT+TGG | 0.483660 | 3.3:-64123631 | None:intergenic |
| ATCAGTAAGGTGGTGTTTGG+TGG | 0.488066 | 3.3:+64122423 | MS.gene35603:CDS |
| GCGGAGTCTAGAGACTATCT+AGG | 0.489892 | 3.3:+64124350 | MS.gene35603:CDS |
| GCCACCTCAGGCAATGAAGC+AGG | 0.491990 | 3.3:-64123609 | None:intergenic |
| GGAGATCAAGACGCTACTAC+AGG | 0.494262 | 3.3:+64124161 | MS.gene35603:CDS |
| CTCGCATATTGGAGTTGAAA+GGG | 0.499999 | 3.3:+64123772 | MS.gene35603:CDS |
| GAGACTATCTAGGCGGCGTA+CGG | 0.501215 | 3.3:+64124360 | MS.gene35603:CDS |
| TTGAAAGGGAGCATAGGCCT+TGG | 0.501700 | 3.3:+64123786 | MS.gene35603:CDS |
| TGGCGAGAGCAGCATTGCGC+TGG | 0.511766 | 3.3:+64124394 | MS.gene35603:CDS |
| GGCGGCGTACGGAAGCCGCC+TGG | 0.516854 | 3.3:+64124371 | MS.gene35603:CDS |
| ATGAAGGAGATTACTGGCAG+TGG | 0.519536 | 3.3:+64123310 | MS.gene35603:CDS |
| AAAATTGCAGCAAGCTATTG+CGG | 0.532841 | 3.3:+64123536 | MS.gene35603:intron |
| GCAAAGTGCAAGGAGCTTAG+TGG | 0.534359 | 3.3:+64123699 | MS.gene35603:CDS |
| GAAGATGAGGCCCCAGAGGA+TGG | 0.538465 | 3.3:+64123352 | MS.gene35603:CDS |
| AACCGGAATTCGCATGTACC+AGG | 0.538686 | 3.3:+64123399 | MS.gene35603:CDS |
| CACCACCAGAAATCAAGCCT+CGG | 0.541618 | 3.3:+64123739 | MS.gene35603:CDS |
| GGGAGTAACATCTTTGCTGA+TGG | 0.546711 | 3.3:+64124323 | MS.gene35603:CDS |
| CGAGGCTTGATTTCTGGTGG+TGG | 0.550569 | 3.3:-64123738 | None:intergenic |
| GCCTGCTTCATTGCCTGAGG+TGG | 0.550736 | 3.3:+64123608 | MS.gene35603:CDS |
| AACACTCTCTTCCTCGCCAA+AGG | 0.557790 | 3.3:-64123574 | None:intergenic |
| AGGTTGAGAGCTTAAACAAA+CGG | 0.563427 | 3.3:+64122463 | MS.gene35603:CDS |
| TGTTACTCCCACTTATCTCT+CGG | 0.571485 | 3.3:-64124310 | None:intergenic |
| TTGTTCGGAGTATAAGATGA+AGG | 0.575022 | 3.3:+64123294 | MS.gene35603:CDS |
| TAACATCTTTGCTGATGGAA+AGG | 0.580663 | 3.3:+64124328 | MS.gene35603:CDS |
| ATGCGAGGAGTAATTGGCCG+AGG | 0.582756 | 3.3:-64123756 | None:intergenic |
| TTCATCTTATACTCCGAACA+AGG | 0.583995 | 3.3:-64123292 | None:intergenic |
| CCTCGCATATTGGAGTTGAA+AGG | 0.584117 | 3.3:+64123771 | MS.gene35603:CDS |
| CTGCTGAGAAATCGTTGAGT+GGG | 0.587772 | 3.3:+64124279 | MS.gene35603:CDS |
| GTTGGCACTGCCATCCTCTG+GGG | 0.593210 | 3.3:-64123362 | None:intergenic |
| GGCCGAGGCTTGATTTCTGG+TGG | 0.598668 | 3.3:-64123741 | None:intergenic |
| GCTTTCTGATGCAAAGTGCA+AGG | 0.600086 | 3.3:+64123689 | MS.gene35603:CDS |
| GATTTCTCAGCAGCCAAAGG+TGG | 0.605023 | 3.3:-64124269 | None:intergenic |
| GAGATCAAGACGCTACTACA+GGG | 0.606115 | 3.3:+64124162 | MS.gene35603:CDS |
| AACGATTTCTCAGCAGCCAA+AGG | 0.608715 | 3.3:-64124272 | None:intergenic |
| TTGGAGTTGAAAGGGAGCAT+AGG | 0.609664 | 3.3:+64123780 | MS.gene35603:CDS |
| CAAAACTCCGAGAGATAAGT+GGG | 0.610976 | 3.3:+64124303 | MS.gene35603:CDS |
| AGTGGAATATTTGTAGCCAA+TGG | 0.611359 | 3.3:+64123328 | MS.gene35603:CDS |
| ATGCTGCTCTCGCCACCAGG+CGG | 0.612447 | 3.3:-64124386 | None:intergenic |
| TGCATACATGACTTTCTCCA+AGG | 0.621174 | 3.3:-64123803 | None:intergenic |
| TGTAGCCAATGGAGAAGATG+AGG | 0.623609 | 3.3:+64123339 | MS.gene35603:CDS |
| GCCGTCGGATGGGATCAGTA+AGG | 0.631418 | 3.3:+64122410 | MS.gene35603:intron |
| GCCAAGCAGCGTGAGCTCAG+TGG | 0.638579 | 3.3:+64123630 | MS.gene35603:CDS |
| GCTGCTGAGAAATCGTTGAG+TGG | 0.639212 | 3.3:+64124278 | MS.gene35603:CDS |
| TGGTCAGGTTACTGATGAAG+AGG | 0.639819 | 3.3:+64122443 | MS.gene35603:CDS |
| AAAGCCTGCTTCATTGCCTG+AGG | 0.644684 | 3.3:+64123605 | MS.gene35603:CDS |
| GGCGTACGGAAGCCGCCTGG+TGG | 0.647825 | 3.3:+64124374 | MS.gene35603:CDS |
| CATCTTTGCTGATGGAAAGG+CGG | 0.648644 | 3.3:+64124331 | MS.gene35603:CDS |
| CAGTCATATCTCCTTTGGCG+AGG | 0.651432 | 3.3:+64123563 | MS.gene35603:CDS |
| GTCGGATGGGATCAGTAAGG+TGG | 0.653944 | 3.3:+64122413 | MS.gene35603:CDS |
| CCTTTCAACTCCAATATGCG+AGG | 0.661806 | 3.3:-64123771 | None:intergenic |
| TGGAGAAGATGAGGCCCCAG+AGG | 0.662591 | 3.3:+64123348 | MS.gene35603:CDS |
| AGATCAAGACGCTACTACAG+GGG | 0.669255 | 3.3:+64124163 | MS.gene35603:CDS |
| ACCTTACTGATCCCATCCGA+CGG | 0.677868 | 3.3:-64122411 | None:intergenic |
| TTTGGCGTGTGAATATGGAG+AGG | 0.686240 | 3.3:+64122179 | None:intergenic |
| TGCTGAGAAATCGTTGAGTG+GGG | 0.718252 | 3.3:+64124280 | MS.gene35603:CDS |
| GAATATGGAGAGGAACACAC+CGG | 0.761577 | 3.3:+64122189 | None:intergenic |
| GAGTCTAGAGACTATCTAGG+CGG | 0.855715 | 3.3:+64124353 | MS.gene35603:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAATTAGCTAAAAATA+AGG | - | chr3.3:64122508-64122527 | None:intergenic | 15.0% |
| !! | ATAAAAATAAATACCTGTCA+CGG | + | chr3.3:64122569-64122588 | MS.gene35603:intron | 20.0% |
| !! | GCTTAAATATGTATCATTTA+TGG | + | chr3.3:64123175-64123194 | MS.gene35603:intron | 20.0% |
| !!! | ATTCATATAGTACTTTGTTT+AGG | + | chr3.3:64123944-64123963 | MS.gene35603:intron | 20.0% |
| !!! | GATCCAAATTTTAAAATTGA+GGG | - | chr3.3:64123892-64123911 | None:intergenic | 20.0% |
| !!! | TGATCCAAATTTTAAAATTG+AGG | - | chr3.3:64123893-64123912 | None:intergenic | 20.0% |
| ! | GAAATCACATTTGCAATATT+GGG | + | chr3.3:64122901-64122920 | MS.gene35603:intron | 25.0% |
| ! | TATAATACCTTCCTATTAGA+TGG | - | chr3.3:64122756-64122775 | None:intergenic | 25.0% |
| ! | TCAGGAAACAACATATTTAA+AGG | + | chr3.3:64124239-64124258 | MS.gene35603:CDS | 25.0% |
| ! | TGTTTAGTAACATACATACA+GGG | + | chr3.3:64123027-64123046 | MS.gene35603:intron | 25.0% |
| ! | TTATTTACCATCTAATAGGA+AGG | + | chr3.3:64122746-64122765 | MS.gene35603:intron | 25.0% |
| ! | TTGTTTAGTAACATACATAC+AGG | + | chr3.3:64123026-64123045 | MS.gene35603:intron | 25.0% |
| !! | AATGCATGTAATGATTTTAC+CGG | + | chr3.3:64123974-64123993 | MS.gene35603:intron | 25.0% |
| !! | TATAGTTTTTGCCTAAATTG+CGG | + | chr3.3:64123056-64123075 | MS.gene35603:intron | 25.0% |
| !!! | AGTATTTTGAGAATGAATCA+TGG | + | chr3.3:64124040-64124059 | MS.gene35603:intron | 25.0% |
| !!! | ATCTAATAGGAAGGTATTAT+AGG | + | chr3.3:64122755-64122774 | MS.gene35603:intron | 25.0% |
| !!! | CATTTTTACCATTTAGAGTA+GGG | + | chr3.3:64122879-64122898 | MS.gene35603:intron | 25.0% |
| !!! | TCATTTTTACCATTTAGAGT+AGG | + | chr3.3:64122878-64122897 | MS.gene35603:intron | 25.0% |
| !!! | TGACCCTCAATTTTAAAATT+TGG | + | chr3.3:64123886-64123905 | MS.gene35603:intron | 25.0% |
| AAAATGACTGCTAATGTTGT+AGG | - | chr3.3:64122971-64122990 | None:intergenic | 30.0% | |
| AAGCTATAGTTATTGCATCA+TGG | + | chr3.3:64124003-64124022 | MS.gene35603:intron | 30.0% | |
| AATAACAACGAAATGTTACG+TGG | - | chr3.3:64122343-64122362 | None:intergenic | 30.0% | |
| AATTTCAATGAGTGGATCTA+TGG | + | chr3.3:64122813-64122832 | MS.gene35603:intron | 30.0% | |
| ACAAACAAAACCTGAAACAA+CGG | - | chr3.3:64122614-64122633 | None:intergenic | 30.0% | |
| ACGTAACATTTCGTTGTTAT+TGG | + | chr3.3:64122342-64122361 | MS.gene35603:intron | 30.0% | |
| AGTTGTTGAATTTCAATGAG+TGG | + | chr3.3:64122805-64122824 | MS.gene35603:intron | 30.0% | |
| CAAGGTAACAACACAATAAA+TGG | - | chr3.3:64124130-64124149 | None:intergenic | 30.0% | |
| CCTATTAGATGGTAAATAAC+AGG | - | chr3.3:64122745-64122764 | None:intergenic | 30.0% | |
| GGAAATCACATTTGCAATAT+TGG | + | chr3.3:64122900-64122919 | MS.gene35603:intron | 30.0% | |
| GTTACTAAACAACTCAATGT+GGG | - | chr3.3:64123018-64123037 | None:intergenic | 30.0% | |
| TATAAGATGAAGGAGATTAC+TGG | + | chr3.3:64123304-64123323 | MS.gene35603:CDS | 30.0% | |
| TATAGGTGAAAAGGGTTAAA+TGG | + | chr3.3:64122772-64122791 | MS.gene35603:intron | 30.0% | |
| TGGATCATATTTCAGTAACT+TGG | + | chr3.3:64123906-64123925 | MS.gene35603:intron | 30.0% | |
| TGTTACTAAACAACTCAATG+TGG | - | chr3.3:64123019-64123038 | None:intergenic | 30.0% | |
| ! | ATAACTATAGCTTTTCGTTC+CGG | - | chr3.3:64123996-64124015 | None:intergenic | 30.0% |
| ! | CATTTATTGTGTTGTTACCT+TGG | + | chr3.3:64124128-64124147 | MS.gene35603:intron | 30.0% |
| ! | CCTGTTATTTACCATCTAAT+AGG | + | chr3.3:64122742-64122761 | MS.gene35603:intron | 30.0% |
| ! | CTAAAAGGCAAAAGTATGTT+TGG | - | chr3.3:64123124-64123143 | None:intergenic | 30.0% |
| ! | TTGCTAACCTGAATTGTTTT+GGG | + | chr3.3:64123836-64123855 | MS.gene35603:intron | 30.0% |
| !! | AATTTCTAGAAAGCCTTGTT+CGG | + | chr3.3:64123279-64123298 | MS.gene35603:intron | 30.0% |
| !! | AGACTATCATAGTTTTGCAA+TGG | + | chr3.3:64123477-64123496 | MS.gene35603:intron | 30.0% |
| !! | GAAGGTATTATAGGTGAAAA+GGG | + | chr3.3:64122764-64122783 | MS.gene35603:intron | 30.0% |
| !!! | TTTTTTTGTTCCGTTGTTTC+AGG | + | chr3.3:64122601-64122620 | MS.gene35603:intron | 30.0% |
| AAAATGTGCTACCGCAATTT+AGG | - | chr3.3:64123070-64123089 | None:intergenic | 35.0% | |
| AAAATTGCAGCAAGCTATTG+CGG | + | chr3.3:64123536-64123555 | MS.gene35603:intron | 35.0% | |
| AACCCTTCAGCAAATAAAAC+CGG | + | chr3.3:64123382-64123401 | MS.gene35603:CDS | 35.0% | |
| AGAAATTCAACAGCCAAACA+AGG | - | chr3.3:64123266-64123285 | None:intergenic | 35.0% | |
| AGGTTGAGAGCTTAAACAAA+CGG | + | chr3.3:64122463-64122482 | MS.gene35603:CDS | 35.0% | |
| AGTGGAATATTTGTAGCCAA+TGG | + | chr3.3:64123328-64123347 | MS.gene35603:CDS | 35.0% | |
| CTTACAAAAAACGCTATACC+TGG | - | chr3.3:64123420-64123439 | None:intergenic | 35.0% | |
| GCAGGGCATATTAAACTAAA+AGG | - | chr3.3:64123139-64123158 | None:intergenic | 35.0% | |
| GTAATCACCCAAAACAATTC+AGG | - | chr3.3:64123846-64123865 | None:intergenic | 35.0% | |
| TAACATCTTTGCTGATGGAA+AGG | + | chr3.3:64124328-64124347 | MS.gene35603:CDS | 35.0% | |
| TGTGATTTCCCTACTCTAAA+TGG | - | chr3.3:64122890-64122909 | None:intergenic | 35.0% | |
| TTCATCTTATACTCCGAACA+AGG | - | chr3.3:64123295-64123314 | None:intergenic | 35.0% | |
| TTGTTCGGAGTATAAGATGA+AGG | + | chr3.3:64123294-64123313 | MS.gene35603:CDS | 35.0% | |
| ! | AATCCTAGATCAGTTTTGCT+TGG | + | chr3.3:64123209-64123228 | MS.gene35603:intron | 35.0% |
| ! | ATTGTGTTGTTACCTTGGTT+AGG | + | chr3.3:64124133-64124152 | MS.gene35603:intron | 35.0% |
| ! | CAAAAGTATGTTTGGATTCG+TGG | - | chr3.3:64123116-64123135 | None:intergenic | 35.0% |
| ! | GTTGCTAACCTGAATTGTTT+TGG | + | chr3.3:64123835-64123854 | MS.gene35603:intron | 35.0% |
| ! | TTCAGGTTAGCAACTTATAG+TGG | - | chr3.3:64123829-64123848 | None:intergenic | 35.0% |
| ! | TTGTGTTGTTACCTTGGTTA+GGG | + | chr3.3:64124134-64124153 | MS.gene35603:intron | 35.0% |
| !! | GGAAGGTATTATAGGTGAAA+AGG | + | chr3.3:64122763-64122782 | MS.gene35603:intron | 35.0% |
| !!! | ATTCCGGTTTTATTTGCTGA+AGG | - | chr3.3:64123388-64123407 | None:intergenic | 35.0% |
| !!! | CAGGTATAGCGTTTTTTGTA+AGG | + | chr3.3:64123418-64123437 | MS.gene35603:intron | 35.0% |
| !!! | TTCCGGTTTTATTTGCTGAA+GGG | - | chr3.3:64123387-64123406 | None:intergenic | 35.0% |
| !!! | TTCTTTGCTGTTTTCAGAAC+TGG | - | chr3.3:64124191-64124210 | None:intergenic | 35.0% |
| AAATTGCAGCAAGCTATTGC+GGG | + | chr3.3:64123537-64123556 | MS.gene35603:intron | 40.0% | |
| ACACCAAGCAAAACTGATCT+AGG | - | chr3.3:64123215-64123234 | None:intergenic | 40.0% | |
| ACCAAGCAATTGAACTCAAG+CGG | - | chr3.3:64122381-64122400 | None:intergenic | 40.0% | |
| CAAAACTCCGAGAGATAAGT+GGG | + | chr3.3:64124303-64124322 | MS.gene35603:CDS | 40.0% | |
| CAACTGCAGATCTACTTGTT+TGG | + | chr3.3:64122230-64122249 | MS.gene35603:intron | 40.0% | |
| CAGAAATTTGCAGAACTGTC+AGG | + | chr3.3:64124221-64124240 | MS.gene35603:CDS | 40.0% | |
| CAGTTAATAAAGCAGCAGCA+GGG | - | chr3.3:64123156-64123175 | None:intergenic | 40.0% | |
| CTCGCATATTGGAGTTGAAA+GGG | + | chr3.3:64123772-64123791 | MS.gene35603:CDS | 40.0% | |
| CTGACAGTTCTGCAAATTTC+TGG | - | chr3.3:64124223-64124242 | None:intergenic | 40.0% | |
| GGAATCAGTCATATCTCCTT+TGG | + | chr3.3:64123558-64123577 | MS.gene35603:CDS | 40.0% | |
| TCACATTTGCAATATTGGGC+TGG | + | chr3.3:64122905-64122924 | MS.gene35603:intron | 40.0% | |
| TCCAATATGCGAGGAGTAAT+TGG | - | chr3.3:64123765-64123784 | None:intergenic | 40.0% | |
| TGCATACATGACTTTCTCCA+AGG | - | chr3.3:64123806-64123825 | None:intergenic | 40.0% | |
| TGTTACTCCCACTTATCTCT+CGG | - | chr3.3:64124313-64124332 | None:intergenic | 40.0% | |
| !!! | GGTTTTATTTGCTGAAGGGT+TGG | - | chr3.3:64123383-64123402 | None:intergenic | 40.0% |
| AAAAACACACAGACCGTGAC+AGG | - | chr3.3:64122585-64122604 | None:intergenic | 45.0% | |
| AACGATTTCTCAGCAGCCAA+AGG | - | chr3.3:64124275-64124294 | None:intergenic | 45.0% | |
| ACCGCTTGAGTTCAATTGCT+TGG | + | chr3.3:64122377-64122396 | MS.gene35603:intron | 45.0% | |
| ACTTACCTGATGAGAACGAG+TGG | - | chr3.3:64122299-64122318 | None:intergenic | 45.0% | |
| AGATCAAGACGCTACTACAG+GGG | + | chr3.3:64124163-64124182 | MS.gene35603:CDS | 45.0% | |
| AGATCTGCAGTTGAAGTGTG+TGG | - | chr3.3:64122223-64122242 | None:intergenic | 45.0% | |
| ATCAGTAAGGTGGTGTTTGG+TGG | + | chr3.3:64122423-64122442 | MS.gene35603:CDS | 45.0% | |
| ATGAAGGAGATTACTGGCAG+TGG | + | chr3.3:64123310-64123329 | MS.gene35603:CDS | 45.0% | |
| CATCTTTGCTGATGGAAAGG+CGG | + | chr3.3:64124331-64124350 | MS.gene35603:CDS | 45.0% | |
| CCTCGCATATTGGAGTTGAA+AGG | + | chr3.3:64123771-64123790 | MS.gene35603:CDS | 45.0% | |
| CCTTTCAACTCCAATATGCG+AGG | - | chr3.3:64123774-64123793 | None:intergenic | 45.0% | |
| CTGCTGAGAAATCGTTGAGT+GGG | + | chr3.3:64124279-64124298 | MS.gene35603:CDS | 45.0% | |
| GAGATCAAGACGCTACTACA+GGG | + | chr3.3:64124162-64124181 | MS.gene35603:CDS | 45.0% | |
| GAGTCTAGAGACTATCTAGG+CGG | + | chr3.3:64124353-64124372 | MS.gene35603:CDS | 45.0% | |
| GCAAAACTCCGAGAGATAAG+TGG | + | chr3.3:64124302-64124321 | MS.gene35603:CDS | 45.0% | |
| GCAGTTAATAAAGCAGCAGC+AGG | - | chr3.3:64123157-64123176 | None:intergenic | 45.0% | |
| GCCAATTACTCCTCGCATAT+TGG | + | chr3.3:64123761-64123780 | MS.gene35603:CDS | 45.0% | |
| GCTTTCTGATGCAAAGTGCA+AGG | + | chr3.3:64123689-64123708 | MS.gene35603:CDS | 45.0% | |
| GGAGCTGGAGAATCATTGAT+TGG | - | chr3.3:64122265-64122284 | None:intergenic | 45.0% | |
| GGGAGTAACATCTTTGCTGA+TGG | + | chr3.3:64124323-64124342 | MS.gene35603:CDS | 45.0% | |
| TACCTGGTACATGCGAATTC+CGG | - | chr3.3:64123404-64123423 | None:intergenic | 45.0% | |
| TGCTGAGAAATCGTTGAGTG+GGG | + | chr3.3:64124280-64124299 | MS.gene35603:CDS | 45.0% | |
| TGGTCAGGTTACTGATGAAG+AGG | + | chr3.3:64122443-64122462 | MS.gene35603:CDS | 45.0% | |
| TGTAGCCAATGGAGAAGATG+AGG | + | chr3.3:64123339-64123358 | MS.gene35603:CDS | 45.0% | |
| TGTTACCTTGGTTAGGGTGA+TGG | + | chr3.3:64124140-64124159 | MS.gene35603:intron | 45.0% | |
| ! | CTTGGTGAATTTTCAGCCGT+CGG | + | chr3.3:64122395-64122414 | MS.gene35603:intron | 45.0% |
| ! | TGAATTTTCAGCCGTCGGAT+GGG | + | chr3.3:64122400-64122419 | MS.gene35603:intron | 45.0% |
| ! | TTGGAGTTGAAAGGGAGCAT+AGG | + | chr3.3:64123780-64123799 | MS.gene35603:CDS | 45.0% |
| !!! | GGCAATGAAGCAGGCTTTTT+TGG | - | chr3.3:64123603-64123622 | None:intergenic | 45.0% |
| !!! | GTTTTTTGTCCAACGTTGCG+TGG | + | chr3.3:64123233-64123252 | MS.gene35603:intron | 45.0% |
| AAAGCCTGCTTCATTGCCTG+AGG | + | chr3.3:64123605-64123624 | MS.gene35603:CDS | 50.0% | |
| AACACTCTCTTCCTCGCCAA+AGG | - | chr3.3:64123577-64123596 | None:intergenic | 50.0% | |
| AACCGGAATTCGCATGTACC+AGG | + | chr3.3:64123399-64123418 | MS.gene35603:CDS | 50.0% | |
| ACCTTACTGATCCCATCCGA+CGG | - | chr3.3:64122414-64122433 | None:intergenic | 50.0% | |
| ATTGGCCGAGGCTTGATTTC+TGG | - | chr3.3:64123747-64123766 | None:intergenic | 50.0% | |
| CACCACCAGAAATCAAGCCT+CGG | + | chr3.3:64123739-64123758 | MS.gene35603:CDS | 50.0% | |
| CAGTCATATCTCCTTTGGCG+AGG | + | chr3.3:64123563-64123582 | MS.gene35603:CDS | 50.0% | |
| GAAGTGTGTGGTTTCCTCAC+CGG | - | chr3.3:64122211-64122230 | None:intergenic | 50.0% | |
| GATCTCCATCACCCTAACCA+AGG | - | chr3.3:64124148-64124167 | None:intergenic | 50.0% | |
| GATTTCTCAGCAGCCAAAGG+TGG | - | chr3.3:64124272-64124291 | None:intergenic | 50.0% | |
| GCAAAGTGCAAGGAGCTTAG+TGG | + | chr3.3:64123699-64123718 | MS.gene35603:CDS | 50.0% | |
| GCGGAGTCTAGAGACTATCT+AGG | + | chr3.3:64124350-64124369 | MS.gene35603:CDS | 50.0% | |
| GCTGCTGAGAAATCGTTGAG+TGG | + | chr3.3:64124278-64124297 | MS.gene35603:CDS | 50.0% | |
| GGAGATCAAGACGCTACTAC+AGG | + | chr3.3:64124161-64124180 | MS.gene35603:CDS | 50.0% | |
| GGGATCAGTAAGGTGGTGTT+TGG | + | chr3.3:64122420-64122439 | MS.gene35603:CDS | 50.0% | |
| TAAAGGCGACTCTCCACCTT+TGG | + | chr3.3:64124256-64124275 | MS.gene35603:CDS | 50.0% | |
| TGAGAACGAGTGGCAGAAGA+AGG | - | chr3.3:64122289-64122308 | None:intergenic | 50.0% | |
| TTCTGCCACTCGTTCTCATC+AGG | + | chr3.3:64122291-64122310 | MS.gene35603:intron | 50.0% | |
| ! | GTGAATTTTCAGCCGTCGGA+TGG | + | chr3.3:64122399-64122418 | MS.gene35603:intron | 50.0% |
| ! | TAAGGTGGTGTTTGGTGGTC+AGG | + | chr3.3:64122428-64122447 | MS.gene35603:CDS | 50.0% |
| ! | TTGAAAGGGAGCATAGGCCT+TGG | + | chr3.3:64123786-64123805 | MS.gene35603:CDS | 50.0% |
| ATGCGAGGAGTAATTGGCCG+AGG | - | chr3.3:64123759-64123778 | None:intergenic | 55.0% | |
| GAACGAGTGGCAGAAGAAGG+AGG | - | chr3.3:64122286-64122305 | None:intergenic | 55.0% | |
| GAGACTATCTAGGCGGCGTA+CGG | + | chr3.3:64124360-64124379 | MS.gene35603:CDS | 55.0% | |
| GCGTGAGCTCAGTGGAACTA+TGG | + | chr3.3:64123638-64123657 | MS.gene35603:CDS | 55.0% | |
| GCGTGGCTTCTGACCTTGTT+TGG | + | chr3.3:64123250-64123269 | MS.gene35603:intron | 55.0% | |
| GTCGGATGGGATCAGTAAGG+TGG | + | chr3.3:64122413-64122432 | MS.gene35603:CDS | 55.0% | |
| TGGGGCCTCATCTTCTCCAT+TGG | - | chr3.3:64123347-64123366 | None:intergenic | 55.0% | |
| !! | CGAGGCTTGATTTCTGGTGG+TGG | - | chr3.3:64123741-64123760 | None:intergenic | 55.0% |
| GAAGATGAGGCCCCAGAGGA+TGG | + | chr3.3:64123352-64123371 | MS.gene35603:CDS | 60.0% | |
| GCCACCTCAGGCAATGAAGC+AGG | - | chr3.3:64123612-64123631 | None:intergenic | 60.0% | |
| GCCGTCGGATGGGATCAGTA+AGG | + | chr3.3:64122410-64122429 | MS.gene35603:intron | 60.0% | |
| GCCTGCTTCATTGCCTGAGG+TGG | + | chr3.3:64123608-64123627 | MS.gene35603:CDS | 60.0% | |
| GGTCAGAAGCCACGCAACGT+TGG | - | chr3.3:64123245-64123264 | None:intergenic | 60.0% | |
| GGTTGGCACTGCCATCCTCT+GGG | - | chr3.3:64123366-64123385 | None:intergenic | 60.0% | |
| GTGGCAGAAGAAGGAGGAGC+TGG | - | chr3.3:64122280-64122299 | None:intergenic | 60.0% | |
| GTTGGCACTGCCATCCTCTG+GGG | - | chr3.3:64123365-64123384 | None:intergenic | 60.0% | |
| TCCACTGAGCTCACGCTGCT+TGG | - | chr3.3:64123634-64123653 | None:intergenic | 60.0% | |
| TGGAGAAGATGAGGCCCCAG+AGG | + | chr3.3:64123348-64123367 | MS.gene35603:CDS | 60.0% | |
| TGGAGAGGAACACACCGGTG+AGG | + | chr3.3:64122194-64122213 | MS.gene35603:intron | 60.0% | |
| ! | GGCCGAGGCTTGATTTCTGG+TGG | - | chr3.3:64123744-64123763 | None:intergenic | 60.0% |
| ATGCTGCTCTCGCCACCAGG+CGG | - | chr3.3:64124389-64124408 | None:intergenic | 65.0% | |
| GCAATGCTGCTCTCGCCACC+AGG | - | chr3.3:64124392-64124411 | None:intergenic | 65.0% | |
| GCCAAGCAGCGTGAGCTCAG+TGG | + | chr3.3:64123630-64123649 | MS.gene35603:CDS | 65.0% | |
| TCACGCTGCTTGGCCACCTC+AGG | - | chr3.3:64123624-64123643 | None:intergenic | 65.0% | |
| TGGCGAGAGCAGCATTGCGC+TGG | + | chr3.3:64124394-64124413 | MS.gene35603:CDS | 65.0% | |
| ! | GGGTTGGCACTGCCATCCTC+TGG | - | chr3.3:64123367-64123386 | None:intergenic | 65.0% |
| GGCGTACGGAAGCCGCCTGG+TGG | + | chr3.3:64124374-64124393 | MS.gene35603:CDS | 75.0% | |
| ! | GGCGGCGTACGGAAGCCGCC+TGG | + | chr3.3:64124371-64124390 | MS.gene35603:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 64122193 | 64124421 | 64122193 | ID=MS.gene35603 |
| chr3.3 | mRNA | 64122193 | 64124421 | 64122193 | ID=MS.gene35603.t1;Parent=MS.gene35603 |
| chr3.3 | exon | 64122193 | 64122210 | 64122193 | ID=MS.gene35603.t1.exon1;Parent=MS.gene35603.t1 |
| chr3.3 | CDS | 64122193 | 64122210 | 64122193 | ID=cds.MS.gene35603.t1;Parent=MS.gene35603.t1 |
| chr3.3 | exon | 64122411 | 64122484 | 64122411 | ID=MS.gene35603.t1.exon2;Parent=MS.gene35603.t1 |
| chr3.3 | CDS | 64122411 | 64122484 | 64122411 | ID=cds.MS.gene35603.t1;Parent=MS.gene35603.t1 |
| chr3.3 | exon | 64123288 | 64123420 | 64123288 | ID=MS.gene35603.t1.exon3;Parent=MS.gene35603.t1 |
| chr3.3 | CDS | 64123288 | 64123420 | 64123288 | ID=cds.MS.gene35603.t1;Parent=MS.gene35603.t1 |
| chr3.3 | exon | 64123546 | 64123818 | 64123546 | ID=MS.gene35603.t1.exon4;Parent=MS.gene35603.t1 |
| chr3.3 | CDS | 64123546 | 64123818 | 64123546 | ID=cds.MS.gene35603.t1;Parent=MS.gene35603.t1 |
| chr3.3 | exon | 64124155 | 64124421 | 64124155 | ID=MS.gene35603.t1.exon5;Parent=MS.gene35603.t1 |
| chr3.3 | CDS | 64124155 | 64124421 | 64124155 | ID=cds.MS.gene35603.t1;Parent=MS.gene35603.t1 |
| Gene Sequence |
| Protein sequence |
