AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35784

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35784.t1 MTR_2g088930 93.902 246 15 0 1 246 1 246 9.27e-166 457
MS.gene35784.t1 MTR_2g088980 74.390 246 63 0 1 246 1 246 8.59e-135 379
MS.gene35784.t1 MTR_7g052020 35.865 237 146 3 10 243 3 236 4.61e-49 162
MS.gene35784.t1 MTR_6g055960 39.506 243 137 5 9 245 6 244 8.40e-47 166
MS.gene35784.t1 MTR_6g055960 31.556 225 144 4 22 243 265 482 7.15e-31 120
MS.gene35784.t1 MTR_6g055960 26.776 183 109 3 76 238 186 363 3.83e-11 63.2
MS.gene35784.t1 MTR_1g105820 36.066 244 147 5 6 243 9 249 4.81e-45 160
MS.gene35784.t1 MTR_6g463830 39.544 263 129 9 1 245 1 251 4.83e-45 161
MS.gene35784.t1 MTR_6g463830 31.579 228 145 6 22 246 272 491 4.07e-29 115
MS.gene35784.t1 MTR_1g105615 35.887 248 149 6 6 245 8 253 1.42e-43 154
MS.gene35784.t1 MTR_1g105650 39.286 224 125 5 29 245 35 254 8.90e-43 154
MS.gene35784.t1 MTR_1g104890 38.073 218 129 4 33 246 45 260 1.27e-41 145
MS.gene35784.t1 MTR_5g068260 38.278 209 123 3 38 243 38 243 1.54e-41 150
MS.gene35784.t1 MTR_1g104890 38.073 218 129 4 33 246 45 260 1.59e-40 144
MS.gene35784.t1 MTR_6g463400 36.328 256 135 7 8 245 5 250 1.69e-40 145
MS.gene35784.t1 MTR_6g463400 32.301 226 137 5 24 243 274 489 4.70e-31 120
MS.gene35784.t1 MTR_6g463400 27.160 243 146 8 28 245 141 377 9.03e-12 64.7
MS.gene35784.t1 MTR_1g104890 38.073 218 129 4 33 246 45 260 1.47e-39 144
MS.gene35784.t1 MTR_6g057770 39.574 235 129 6 22 245 20 252 2.00e-39 145
MS.gene35784.t1 MTR_6g057770 32.444 225 138 5 24 243 275 490 4.84e-31 121
MS.gene35784.t1 MTR_6g463710 39.574 235 129 6 22 245 20 252 2.04e-39 145
MS.gene35784.t1 MTR_6g463710 32.444 225 138 5 24 243 275 490 5.23e-31 121
MS.gene35784.t1 MTR_1g104890 38.073 218 129 4 33 246 45 260 3.56e-39 144
MS.gene35784.t1 MTR_5g005530 34.855 241 146 5 7 243 13 246 7.15e-39 142
MS.gene35784.t1 MTR_5g068250 38.756 209 122 3 38 243 43 248 1.23e-38 141
MS.gene35784.t1 MTR_0007s0020 38.224 259 139 8 1 245 1 252 1.44e-38 142
MS.gene35784.t1 MTR_0007s0020 31.556 225 144 4 22 243 274 491 5.87e-30 118
MS.gene35784.t1 MTR_0007s0020 24.082 245 148 9 26 238 134 372 4.31e-11 62.8
MS.gene35784.t1 MTR_1g105655 35.965 228 135 6 23 243 29 252 2.73e-38 141
MS.gene35784.t1 MTR_6g463700 36.885 244 143 5 6 243 13 251 4.29e-38 141
MS.gene35784.t1 MTR_6g463700 31.522 184 116 2 29 208 287 464 8.44e-21 91.7
MS.gene35784.t1 MTR_6g057750 36.885 244 143 5 6 243 13 251 4.53e-38 141
MS.gene35784.t1 MTR_6g057750 34.978 223 134 3 29 246 287 503 1.11e-33 129
MS.gene35784.t1 MTR_5g005520 35.047 214 126 7 39 243 36 245 2.73e-37 137
MS.gene35784.t1 MTR_3g011890 31.776 214 142 3 33 245 35 245 3.21e-37 132
MS.gene35784.t1 MTR_8g028065 34.855 241 145 5 6 243 10 241 6.04e-37 138
MS.gene35784.t1 MTR_8g028065 34.188 234 140 5 21 246 262 489 1.12e-31 123
MS.gene35784.t1 MTR_5g005520 35.047 214 126 7 39 243 41 250 6.21e-37 137
MS.gene35784.t1 MTR_1g021642 34.252 254 144 8 6 239 10 260 8.22e-37 137
MS.gene35784.t1 MTR_5g005450 39.524 210 116 6 39 243 41 244 1.00e-36 137
MS.gene35784.t1 MTR_1g021638 33.878 245 149 7 9 243 9 250 1.53e-36 131
MS.gene35784.t1 MTR_1g021610 33.469 245 151 6 4 239 5 246 1.66e-36 136
MS.gene35784.t1 MTR_5g068190 35.950 242 139 7 15 243 8 246 1.92e-35 133
MS.gene35784.t1 MTR_6g463660 38.150 173 102 2 78 245 79 251 2.55e-35 131
MS.gene35784.t1 MTR_6g463660 36.095 169 101 3 80 243 323 489 1.66e-30 118
MS.gene35784.t1 MTR_6g463660 28.814 236 137 7 28 238 141 370 5.83e-14 71.2
MS.gene35784.t1 MTR_6g057680 38.150 173 102 2 78 245 79 251 2.55e-35 131
MS.gene35784.t1 MTR_6g057680 36.095 169 101 3 80 243 323 489 1.66e-30 118
MS.gene35784.t1 MTR_6g057680 28.814 236 137 7 28 238 141 370 5.83e-14 71.2
MS.gene35784.t1 MTR_8g041650 32.231 242 158 5 4 243 10 247 4.05e-35 132
MS.gene35784.t1 MTR_3g011910 31.687 243 159 4 6 243 17 257 7.83e-35 130
MS.gene35784.t1 MTR_1g105755 34.286 245 144 6 10 243 8 246 8.78e-35 131
MS.gene35784.t1 MTR_8g041880 30.488 246 163 3 3 243 4 246 9.41e-35 131
MS.gene35784.t1 MTR_5g005480 33.465 254 146 5 3 243 5 248 2.04e-34 130
MS.gene35784.t1 MTR_1g105800 43.030 165 89 4 82 243 85 247 3.58e-34 129
MS.gene35784.t1 MTR_3g011910 34.328 201 128 3 45 243 33 231 9.83e-34 128
MS.gene35784.t1 MTR_1g105850 33.173 208 130 4 38 239 47 251 1.04e-33 124
MS.gene35784.t1 MTR_1g105640 33.484 221 132 6 33 243 36 251 5.65e-33 126
MS.gene35784.t1 MTR_1g105640 33.484 221 132 6 33 243 36 251 5.68e-33 126
MS.gene35784.t1 MTR_1g105640 33.484 221 132 6 33 243 36 251 5.94e-33 126
MS.gene35784.t1 MTR_1g105595 31.944 216 145 2 30 243 37 252 1.11e-32 125
MS.gene35784.t1 MTR_1g105595 31.944 216 145 2 30 243 37 252 1.33e-32 125
MS.gene35784.t1 MTR_0341s0010 34.959 246 141 10 10 239 8 250 1.59e-32 120
MS.gene35784.t1 MTR_1g105885 32.271 251 155 8 7 245 4 251 5.35e-32 118
MS.gene35784.t1 MTR_6g053000 33.603 247 148 7 9 246 6 245 5.35e-32 123
MS.gene35784.t1 MTR_1g021632 33.058 242 147 9 9 239 9 246 2.03e-31 122
MS.gene35784.t1 MTR_1g021630 34.959 246 141 10 10 239 8 250 4.44e-31 121
MS.gene35784.t1 MTR_1g105840 32.917 240 153 4 9 243 1 237 4.88e-31 120
MS.gene35784.t1 MTR_2g010730 33.175 211 129 5 37 243 43 245 7.66e-31 115
MS.gene35784.t1 MTR_2g010710 29.767 215 137 5 32 243 37 240 8.31e-31 115
MS.gene35784.t1 MTR_1g105860 30.894 246 150 8 11 239 6 248 4.86e-30 113
MS.gene35784.t1 MTR_1g105585 29.167 240 168 2 6 243 13 252 5.25e-30 117
MS.gene35784.t1 MTR_1g105860 30.894 246 150 8 11 239 23 265 5.95e-30 113
MS.gene35784.t1 MTR_1g105750 38.554 166 98 2 82 243 85 250 1.02e-29 117
MS.gene35784.t1 MTR_1g021635 34.135 208 127 6 39 239 42 246 1.17e-28 114
MS.gene35784.t1 MTR_8g041870 25.806 217 159 1 29 243 30 246 2.39e-28 112
MS.gene35784.t1 MTR_8g041910 27.459 244 168 3 3 239 9 250 2.64e-28 113
MS.gene35784.t1 MTR_1g105600 31.780 236 140 8 20 243 282 508 1.65e-27 110
MS.gene35784.t1 MTR_1g105600 31.472 197 122 4 60 245 71 265 3.69e-20 89.7
MS.gene35784.t1 MTR_8g041710 29.565 230 153 5 14 239 13 237 1.83e-27 110
MS.gene35784.t1 MTR_1g105725 36.207 174 96 5 82 243 96 266 2.58e-27 110
MS.gene35784.t1 MTR_3g079850 31.641 256 153 5 11 246 10 263 3.38e-27 109
MS.gene35784.t1 MTR_3g079850 31.641 256 153 5 11 246 10 263 4.96e-27 109
MS.gene35784.t1 MTR_1g105830 30.380 237 147 6 9 243 29 249 7.33e-27 105
MS.gene35784.t1 MTR_8g041660 27.854 219 151 4 29 243 30 245 5.99e-25 103
MS.gene35784.t1 MTR_0074s0060 34.221 263 126 10 1 246 1 233 6.73e-25 103
MS.gene35784.t1 MTR_8g041660 27.854 219 151 4 29 243 30 245 8.51e-25 102
MS.gene35784.t1 MTR_8g041890 25.301 249 178 3 3 246 4 249 3.70e-24 101
MS.gene35784.t1 MTR_8g041690 32.317 164 110 1 76 239 78 240 6.63e-24 100
MS.gene35784.t1 MTR_0264s0030 32.402 179 112 5 76 246 69 246 1.01e-23 97.4
MS.gene35784.t1 MTR_0264s0030 33.333 120 75 1 124 238 1 120 2.24e-13 68.9
MS.gene35784.t1 MTR_3g065370 27.966 236 152 6 3 238 4 221 1.36e-23 96.3
MS.gene35784.t1 MTR_1g105710 31.111 225 136 9 30 243 29 245 2.66e-22 95.9
MS.gene35784.t1 MTR_0341s0020 32.083 240 125 11 10 239 8 219 8.02e-22 94.4
MS.gene35784.t1 MTR_2g010720 31.818 198 123 6 49 243 115 303 3.02e-21 90.9
MS.gene35784.t1 MTR_5g065130 27.083 240 165 5 11 243 3 239 1.64e-20 90.5
MS.gene35784.t1 MTR_5g078030 28.085 235 157 5 5 238 3 226 4.56e-20 87.0
MS.gene35784.t1 MTR_1g105700 28.070 228 147 8 30 245 30 252 1.00e-18 85.5
MS.gene35784.t1 MTR_5g068290 36.066 122 75 2 124 243 1 121 3.22e-17 80.1
MS.gene35784.t1 MTR_3g415610 28.800 125 87 1 121 243 8 132 8.44e-16 76.6
MS.gene35784.t1 MTR_1g105855 25.926 216 141 6 38 238 61 272 1.06e-15 75.1
MS.gene35784.t1 MTR_6g057440 32.727 165 87 7 1 152 1 154 4.01e-15 70.9
MS.gene35784.t1 MTR_8g104990 27.317 205 132 6 39 238 35 227 1.84e-14 71.6
MS.gene35784.t1 MTR_7g033135 24.176 182 128 4 65 246 67 238 6.39e-13 68.2
MS.gene35784.t1 MTR_3g415620 36.275 102 62 2 33 133 112 211 7.72e-13 65.9
MS.gene35784.t1 MTR_1g105575 39.773 88 49 3 156 243 19 102 1.24e-12 63.5
MS.gene35784.t1 MTR_5g033690 31.844 179 100 7 62 238 68 226 4.62e-12 65.9
MS.gene35784.t1 MTR_3g011930 29.897 97 68 0 148 244 6 102 1.29e-11 64.3
MS.gene35784.t1 MTR_3g064080 23.464 179 123 3 81 246 80 257 1.63e-11 63.9
MS.gene35784.t1 MTR_7g098410 24.623 199 141 2 44 242 43 232 5.91e-11 61.6
MS.gene35784.t1 MTR_6g065920 26.786 168 87 3 47 214 16 147 9.80e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35784.t1 AT3G22060 57.273 220 87 4 29 245 35 250 1.01e-83 250
MS.gene35784.t1 AT3G58310 43.644 236 121 5 17 244 23 254 6.81e-58 185
MS.gene35784.t1 AT5G48540 37.083 240 145 4 8 243 3 240 1.07e-49 164
MS.gene35784.t1 AT3G21990 40.611 229 117 6 29 245 34 255 1.97e-48 160
MS.gene35784.t1 AT4G05200 36.179 246 147 5 8 246 8 250 5.03e-48 168
MS.gene35784.t1 AT4G20640 40.611 229 117 6 29 245 34 255 5.14e-48 159
MS.gene35784.t1 AT4G20580 40.611 229 117 6 29 245 34 255 5.14e-48 159
MS.gene35784.t1 AT4G20610 40.611 229 117 6 29 245 34 255 5.14e-48 159
MS.gene35784.t1 AT4G20630 40.611 229 117 6 29 245 34 255 5.14e-48 159
MS.gene35784.t1 AT4G20620 40.611 229 117 6 29 245 34 255 5.14e-48 159
MS.gene35784.t1 AT4G20590 40.611 229 117 6 29 245 34 255 5.14e-48 159
MS.gene35784.t1 AT4G20600 40.611 229 117 6 29 245 34 255 5.14e-48 159
MS.gene35784.t1 AT4G20670 40.611 229 117 6 29 245 34 255 5.28e-48 159
MS.gene35784.t1 AT4G20570 40.611 229 117 6 29 245 48 269 5.35e-48 160
MS.gene35784.t1 AT4G20560 40.611 229 117 6 29 245 48 269 5.35e-48 160
MS.gene35784.t1 AT4G20645 40.611 229 117 6 29 245 48 269 5.35e-48 160
MS.gene35784.t1 AT4G20550 40.611 229 117 6 29 245 48 269 5.35e-48 160
MS.gene35784.t1 AT4G20530 40.611 229 117 6 29 245 48 269 5.35e-48 160
MS.gene35784.t1 AT4G20540 40.611 229 117 6 29 245 48 269 5.35e-48 160
MS.gene35784.t1 AT4G05200 36.179 246 147 5 8 246 26 268 6.48e-48 168
MS.gene35784.t1 AT2G31620 41.410 227 117 8 29 245 34 254 1.79e-44 150
MS.gene35784.t1 AT3G21960 38.053 226 127 5 29 245 40 261 6.84e-43 146
MS.gene35784.t1 AT4G20680 40.948 232 117 10 29 245 40 266 1.01e-42 146
MS.gene35784.t1 AT3G22000 40.517 232 118 10 29 245 40 266 9.91e-42 144
MS.gene35784.t1 AT3G22050 42.353 170 86 5 86 246 92 258 1.12e-38 135
MS.gene35784.t1 AT3G22040 35.593 236 118 10 29 245 36 256 2.62e-37 132
MS.gene35784.t1 AT3G22010 35.965 228 130 8 29 245 40 262 4.95e-37 131
MS.gene35784.t1 AT4G23180 36.207 232 124 8 27 246 36 255 1.45e-35 132
MS.gene35784.t1 AT4G23180 35.088 228 132 6 27 246 36 255 3.24e-35 132
MS.gene35784.t1 AT3G21940 39.326 178 87 3 88 245 3 179 3.44e-35 124
MS.gene35784.t1 AT1G61750 34.389 221 138 3 24 239 23 241 4.28e-35 128
MS.gene35784.t1 AT4G23170 33.047 233 141 6 23 246 21 247 4.55e-35 126
MS.gene35784.t1 AT4G23180 35.088 228 132 6 27 246 36 255 5.28e-35 132
MS.gene35784.t1 AT3G21940 32.727 275 145 8 1 245 10 274 7.34e-35 126
MS.gene35784.t1 AT3G21970 31.801 261 159 9 2 246 7 264 1.36e-34 125
MS.gene35784.t1 AT4G38830 34.685 222 136 5 28 243 26 244 3.99e-34 129
MS.gene35784.t1 AT3G21910 32.035 231 138 7 29 244 40 266 1.50e-32 120
MS.gene35784.t1 AT4G21230 36.916 214 114 7 38 243 40 240 6.50e-32 123
MS.gene35784.t1 AT3G21900 31.496 254 143 9 6 244 11 248 3.65e-31 115
MS.gene35784.t1 AT4G23230 33.632 223 133 6 31 246 29 243 1.10e-30 119
MS.gene35784.t1 AT4G23130 36.726 226 130 7 27 246 28 246 2.38e-30 118
MS.gene35784.t1 AT4G23130 36.726 226 130 7 27 246 28 246 2.52e-30 119
MS.gene35784.t1 AT4G23130 36.726 226 130 7 27 246 28 246 2.72e-30 119
MS.gene35784.t1 AT4G23280 32.479 234 140 7 22 246 20 244 6.08e-30 117
MS.gene35784.t1 AT4G23160 31.250 224 143 4 29 246 46 264 6.56e-30 117
MS.gene35784.t1 AT4G23160 30.603 232 148 5 23 246 618 844 6.83e-30 117
MS.gene35784.t1 AT4G23160 30.603 232 148 5 23 246 618 844 6.83e-30 117
MS.gene35784.t1 AT4G23280 32.479 234 140 7 22 246 20 244 7.66e-30 117
MS.gene35784.t1 AT4G23280 32.479 234 140 7 22 246 20 244 7.68e-30 117
MS.gene35784.t1 AT4G23150 33.333 234 139 7 23 246 21 247 1.52e-29 116
MS.gene35784.t1 AT1G63550 29.018 224 151 4 21 239 24 244 1.72e-29 113
MS.gene35784.t1 AT4G21410 31.034 232 152 6 17 243 21 249 4.75e-29 114
MS.gene35784.t1 AT4G21410 31.034 232 152 6 17 243 21 249 6.73e-29 114
MS.gene35784.t1 AT3G29040 32.468 231 143 7 27 246 27 255 7.28e-29 110
MS.gene35784.t1 AT3G21930 32.911 237 130 9 29 244 40 268 2.15e-28 109
MS.gene35784.t1 AT3G21920 32.911 237 130 9 29 244 40 268 2.56e-28 108
MS.gene35784.t1 AT3G21920 32.911 237 130 9 29 244 62 290 3.88e-28 108
MS.gene35784.t1 AT4G23270 32.549 255 141 7 8 246 3 242 4.40e-28 112
MS.gene35784.t1 AT4G23270 32.549 255 141 7 8 246 3 242 4.40e-28 112
MS.gene35784.t1 AT4G23270 32.549 255 141 7 8 246 3 242 4.45e-28 112
MS.gene35784.t1 AT3G45860 33.074 257 140 8 12 246 3 249 9.17e-28 111
MS.gene35784.t1 AT3G22030 38.621 145 77 5 110 245 111 252 1.55e-27 106
MS.gene35784.t1 AT3G21900 30.315 254 138 9 6 244 11 240 1.80e-27 106
MS.gene35784.t1 AT4G23140 31.760 233 144 6 23 246 22 248 5.25e-27 109
MS.gene35784.t1 AT4G23140 31.760 233 144 6 23 246 22 248 5.93e-27 109
MS.gene35784.t1 AT3G21980 31.858 226 110 6 29 245 34 224 1.70e-26 102
MS.gene35784.t1 AT1G63590 28.340 247 165 5 2 240 3 245 7.42e-26 102
MS.gene35784.t1 AT4G23310 28.634 227 152 4 18 240 131 351 1.05e-25 105
MS.gene35784.t1 AT4G23310 28.000 225 147 7 23 238 21 239 5.45e-15 74.3
MS.gene35784.t1 AT4G23310 28.319 226 154 4 18 240 131 351 1.11e-25 105
MS.gene35784.t1 AT4G23310 28.000 225 147 7 23 238 21 239 6.50e-15 74.3
MS.gene35784.t1 AT4G21400 28.959 221 150 5 28 243 33 251 1.29e-25 105
MS.gene35784.t1 AT4G21400 28.959 221 150 5 28 243 33 251 1.60e-25 104
MS.gene35784.t1 AT4G21400 28.959 221 150 5 28 243 33 251 1.60e-25 104
MS.gene35784.t1 AT4G21400 28.959 221 150 5 28 243 33 251 1.60e-25 104
MS.gene35784.t1 AT4G21400 28.959 221 150 5 28 243 33 251 2.26e-25 104
MS.gene35784.t1 AT4G21400 28.959 221 150 5 28 243 33 251 2.37e-25 104
MS.gene35784.t1 AT4G23220 28.767 219 145 5 33 243 25 240 2.71e-25 104
MS.gene35784.t1 AT3G29050 30.000 250 128 9 29 244 38 274 4.51e-25 100
MS.gene35784.t1 AT4G11460 26.255 259 166 7 1 243 1 250 5.72e-25 103
MS.gene35784.t1 AT4G23200 28.700 223 144 6 33 243 24 243 5.97e-25 103
MS.gene35784.t1 AT4G11460 26.255 259 166 7 1 243 1 250 6.28e-25 103
MS.gene35784.t1 AT4G23200 28.700 223 144 6 33 243 24 243 7.99e-25 103
MS.gene35784.t1 AT3G60720 29.187 209 132 3 35 238 35 232 1.18e-24 98.6
MS.gene35784.t1 AT3G60720 29.187 209 132 3 35 238 35 232 1.96e-24 98.6
MS.gene35784.t1 AT3G60720 29.187 209 132 3 35 238 35 232 2.22e-24 99.0
MS.gene35784.t1 AT1G63600 29.108 213 138 3 36 239 44 252 5.73e-24 98.6
MS.gene35784.t1 AT4G21400 30.588 170 114 3 78 243 56 225 7.63e-24 100
MS.gene35784.t1 AT1G63570 25.726 241 171 3 6 241 5 242 2.08e-23 96.3
MS.gene35784.t1 AT1G63570 25.726 241 171 3 6 241 5 242 2.08e-23 96.3
MS.gene35784.t1 AT1G63570 25.726 241 171 3 6 241 58 295 4.26e-23 96.3
MS.gene35784.t1 AT4G11521 28.829 222 132 6 39 244 31 242 4.79e-23 94.7
MS.gene35784.t1 AT1G70690 28.440 218 135 6 29 240 32 234 1.61e-22 94.0
MS.gene35784.t1 AT5G37660 28.436 211 139 4 29 239 38 236 7.69e-21 89.4
MS.gene35784.t1 AT5G37660 28.436 211 139 4 29 239 38 236 9.04e-21 89.0
MS.gene35784.t1 AT2G01660 28.311 219 138 5 27 239 25 230 1.87e-20 87.8
MS.gene35784.t1 AT4G11460 28.000 175 112 3 83 243 1 175 2.58e-20 90.1
MS.gene35784.t1 AT2G01660 27.982 218 138 5 27 238 25 229 5.03e-20 87.0
MS.gene35784.t1 AT2G01660 27.982 218 138 5 27 238 25 229 5.37e-20 87.0
MS.gene35784.t1 AT4G00970 31.081 222 141 8 24 239 41 256 2.45e-19 87.0
MS.gene35784.t1 AT4G00970 31.081 222 141 8 24 239 41 256 2.74e-19 87.0
MS.gene35784.t1 AT4G11530 26.484 219 145 5 39 244 32 247 4.47e-19 86.3
MS.gene35784.t1 AT4G23260 25.778 225 146 6 34 243 32 250 8.55e-19 85.5
MS.gene35784.t1 AT4G23260 25.778 225 146 6 34 243 32 250 1.07e-18 85.1
MS.gene35784.t1 AT4G23300 27.869 244 156 8 19 245 12 252 1.67e-18 84.7
MS.gene35784.t1 AT4G23190 26.744 258 164 10 1 243 1 248 2.77e-18 84.0
MS.gene35784.t1 AT4G23190 26.744 258 164 10 1 243 1 248 3.08e-18 84.0
MS.gene35784.t1 AT3G22020 36.552 145 81 5 86 222 58 199 3.62e-18 80.5
MS.gene35784.t1 AT3G22020 36.552 145 81 5 86 222 58 199 3.62e-18 80.5
MS.gene35784.t1 AT4G23210 26.577 222 145 6 39 245 34 252 1.88e-17 81.6
MS.gene35784.t1 AT5G41300 25.498 251 167 6 3 240 4 247 1.99e-17 79.7
MS.gene35784.t1 AT4G23210 26.577 222 145 6 39 245 34 252 2.28e-17 81.3
MS.gene35784.t1 AT4G23210 26.577 222 145 6 39 245 34 252 2.28e-17 81.3
MS.gene35784.t1 AT4G23210 26.577 222 145 6 39 245 34 252 2.36e-17 81.3
MS.gene35784.t1 AT4G23210 26.577 222 145 6 39 245 34 252 2.87e-17 80.9
MS.gene35784.t1 AT5G41290 24.590 244 176 3 3 241 4 244 3.00e-17 79.3
MS.gene35784.t1 AT4G04500 28.713 202 118 6 64 245 59 254 3.98e-17 80.9
MS.gene35784.t1 AT4G04500 28.713 202 118 6 64 245 59 254 4.73e-17 80.5
MS.gene35784.t1 AT4G04500 28.713 202 118 6 64 245 59 254 4.73e-17 80.5
MS.gene35784.t1 AT4G23290 25.764 229 137 8 36 244 32 247 4.78e-17 80.5
MS.gene35784.t1 AT1G63580 26.606 218 144 6 36 240 24 238 1.06e-16 77.8
MS.gene35784.t1 AT4G23240 25.000 220 152 6 33 243 29 244 9.96e-15 73.6
MS.gene35784.t1 AT4G11480 24.066 241 164 7 6 239 6 234 4.14e-14 71.6
MS.gene35784.t1 AT4G11480 24.066 241 164 7 6 239 6 234 4.37e-14 71.6
MS.gene35784.t1 AT4G11480 24.066 241 164 7 6 239 6 234 4.63e-14 71.6
MS.gene35784.t1 AT4G23320 37.500 104 52 3 154 244 4 107 4.95e-14 71.6
MS.gene35784.t1 AT4G23320 37.500 104 52 3 154 244 4 107 4.95e-14 71.6
MS.gene35784.t1 AT4G23320 37.500 104 52 3 154 244 25 128 5.29e-14 71.2
MS.gene35784.t1 AT4G11490 23.904 251 164 7 6 244 11 246 5.38e-14 71.6
MS.gene35784.t1 AT4G11480 24.066 241 164 7 6 239 6 234 5.54e-14 71.6
MS.gene35784.t1 AT4G23190 26.471 170 114 3 85 243 1 170 7.69e-14 70.9
MS.gene35784.t1 AT4G23190 26.471 170 114 3 85 243 1 170 7.69e-14 70.9
MS.gene35784.t1 AT4G11470 24.031 258 158 8 6 243 6 245 3.13e-13 69.3
MS.gene35784.t1 AT4G04510 24.706 255 157 8 10 243 7 247 3.67e-13 68.9
MS.gene35784.t1 AT4G04510 24.706 255 157 8 10 243 9 249 3.71e-13 68.9
MS.gene35784.t1 AT4G11470 24.031 258 158 8 6 243 11 250 3.71e-13 68.9
MS.gene35784.t1 AT4G23250 25.108 231 145 7 34 243 32 255 5.32e-13 68.6
MS.gene35784.t1 AT4G23250 25.108 231 145 7 34 243 32 255 5.64e-13 68.6
MS.gene35784.t1 AT4G23250 25.108 231 145 7 34 243 32 255 6.28e-13 68.6
MS.gene35784.t1 AT4G04490 29.148 223 133 8 37 243 33 246 8.40e-13 67.8
MS.gene35784.t1 AT5G40380 25.410 244 156 9 7 243 12 236 1.13e-11 64.3
MS.gene35784.t1 AT5G40380 25.410 244 156 9 7 243 12 236 1.27e-11 64.3
MS.gene35784.t1 AT5G40380 25.820 244 155 10 7 243 12 236 1.35e-11 64.3
MS.gene35784.t1 AT5G41280 26.702 191 117 5 58 239 67 243 2.05e-11 62.8
MS.gene35784.t1 AT4G21410 31.452 124 81 3 124 243 1 124 3.37e-11 63.2
MS.gene35784.t1 AT1G70520 26.214 206 144 5 41 244 47 246 3.50e-11 63.2
MS.gene35784.t1 AT4G04540 26.457 223 142 7 39 243 35 253 4.73e-11 62.8
MS.gene35784.t1 AT4G04540 26.457 223 142 7 39 243 35 253 5.27e-11 62.4
MS.gene35784.t1 AT4G04540 26.457 223 142 7 39 243 35 253 5.36e-11 62.4
MS.gene35784.t1 AT4G04540 26.457 223 142 7 39 243 35 253 6.74e-11 62.4

Find 37 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGCATGTTCAAATATT+TGG 0.127073 2.1:+13057676 MS.gene35784:CDS
CAATGTTTGTCCATATAAAA+AGG 0.147126 2.1:+13057634 MS.gene35784:CDS
GGAGAATCAGAGAGAGTTTA+TGG 0.176209 2.1:+13057869 MS.gene35784:CDS
GCCCATATGCTTGTTGGTTT+TGG 0.205733 2.1:-13057538 None:intergenic
TCTTGCTAATGAAGCTTCTA+TGG 0.243008 2.1:+13057811 MS.gene35784:CDS
TTCTTTATTCAAACAGCCTT+TGG 0.315222 2.1:+13057365 MS.gene35784:CDS
TATTTGGACAATGATTTCTT+TGG 0.337508 2.1:+13057692 MS.gene35784:CDS
AAAACCCCTTCAACAGGTTT+TGG 0.339347 2.1:+13057488 MS.gene35784:CDS
ATGAAATTTACCCTTTCGTT+AGG 0.341451 2.1:+13058026 MS.gene35784:CDS
GAGCTAGCCCATATGCTTGT+TGG 0.350069 2.1:-13057544 None:intergenic
GCTAGTGGAGAGTTGAAGAT+TGG 0.363707 2.1:+13057848 MS.gene35784:CDS
GCAATTATCGTACCATATAA+TGG 0.374511 2.1:-13057660 None:intergenic
ATCTACAAAACCCCTTCAAC+AGG 0.382778 2.1:+13057482 MS.gene35784:CDS
TACCAAAACCAACAAGCATA+TGG 0.393254 2.1:+13057536 MS.gene35784:CDS
GTCATGTTGTTGAATTTGAT+AGG 0.427422 2.1:-13057770 None:intergenic
GATTGTAAGAAGTGTCTTGA+TGG 0.459889 2.1:+13057926 MS.gene35784:CDS
GAGAATCAGAGAGAGTTTAT+GGG 0.488405 2.1:+13057870 MS.gene35784:CDS
CCACTGCCAAAACCTGTTGA+AGG 0.489227 2.1:-13057494 None:intergenic
CAAATTCAACAACATGACTA+AGG 0.496004 2.1:+13057775 MS.gene35784:CDS
TGAAATTTACCCTTTCGTTA+GGG 0.515842 2.1:+13058027 MS.gene35784:CDS
GTTGAACAAATGTGGAAAAG+TGG 0.517504 2.1:-13057395 None:intergenic
AATAATCGTAAAGAGCTTTG+AGG 0.517728 2.1:-13057321 None:intergenic
ACCAAAACCAACAAGCATAT+GGG 0.520056 2.1:+13057537 MS.gene35784:CDS
GAAAAGTGGGTCGGCTCCAA+AGG 0.521250 2.1:-13057381 None:intergenic
AAAGGAGGCAGAGTTGTTGG+TGG 0.540106 2.1:+13057986 MS.gene35784:CDS
GAGTTTACTCCCTAACGAAA+GGG 0.545719 2.1:-13058036 None:intergenic
TCTTACAATCAACACTAGAA+AGG 0.547293 2.1:-13057913 None:intergenic
TGAGTTTACTCCCTAACGAA+AGG 0.550623 2.1:-13058037 None:intergenic
GAACTTCCAAATTGCTGTGA+TGG 0.557359 2.1:+13057959 MS.gene35784:CDS
TCTCAGAGGTTGAACAAATG+TGG 0.566804 2.1:-13057403 None:intergenic
CACTGCCAAAACCTGTTGAA+GGG 0.570055 2.1:-13057493 None:intergenic
AACTTCCAAATTGCTGTGAT+GGG 0.577173 2.1:+13057960 MS.gene35784:CDS
TTGAACAAATGTGGAAAAGT+GGG 0.598581 2.1:-13057394 None:intergenic
ACTGCCAAAACCTGTTGAAG+GGG 0.600045 2.1:-13057492 None:intergenic
ACAAATGTGGAAAAGTGGGT+CGG 0.648482 2.1:-13057390 None:intergenic
TATGGGCTAGCTCTTTGTCG+TGG 0.668182 2.1:+13057554 MS.gene35784:CDS
ATGTGATGTGAAGTTCTCAG+AGG 0.753488 2.1:-13057417 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTTTGTCCATATAAAAA+GGG + chr2.1:13057635-13057654 MS.gene35784:CDS 20.0%
!! TAATTGCATGTTCAAATATT+TGG + chr2.1:13057676-13057695 MS.gene35784:CDS 20.0%
! CAATGTTTGTCCATATAAAA+AGG + chr2.1:13057634-13057653 MS.gene35784:CDS 25.0%
! GATAAAAAACTTTATGCTAG+TGG + chr2.1:13057833-13057852 MS.gene35784:CDS 25.0%
! TATTTGGACAATGATTTCTT+TGG + chr2.1:13057692-13057711 MS.gene35784:CDS 25.0%
AATAATCGTAAAGAGCTTTG+AGG - chr2.1:13057324-13057343 None:intergenic 30.0%
ATGAAATTTACCCTTTCGTT+AGG + chr2.1:13058026-13058045 MS.gene35784:CDS 30.0%
CAAATTCAACAACATGACTA+AGG + chr2.1:13057775-13057794 MS.gene35784:CDS 30.0%
GCAATTATCGTACCATATAA+TGG - chr2.1:13057663-13057682 None:intergenic 30.0%
GTCATGTTGTTGAATTTGAT+AGG - chr2.1:13057773-13057792 None:intergenic 30.0%
TCTTACAATCAACACTAGAA+AGG - chr2.1:13057916-13057935 None:intergenic 30.0%
TGAAATTTACCCTTTCGTTA+GGG + chr2.1:13058027-13058046 MS.gene35784:CDS 30.0%
TTCTTTATTCAAACAGCCTT+TGG + chr2.1:13057365-13057384 MS.gene35784:CDS 30.0%
TTGAACAAATGTGGAAAAGT+GGG - chr2.1:13057397-13057416 None:intergenic 30.0%
! ATAATGGCACCCTTTTTATA+TGG - chr2.1:13057647-13057666 None:intergenic 30.0%
!! ATAAAAAGGGTGCCATTATA+TGG + chr2.1:13057648-13057667 MS.gene35784:CDS 30.0%
AACTTCCAAATTGCTGTGAT+GGG + chr2.1:13057960-13057979 MS.gene35784:CDS 35.0%
ACCAAAACCAACAAGCATAT+GGG + chr2.1:13057537-13057556 MS.gene35784:CDS 35.0%
GAGAATCAGAGAGAGTTTAT+GGG + chr2.1:13057870-13057889 MS.gene35784:CDS 35.0%
GTTGAACAAATGTGGAAAAG+TGG - chr2.1:13057398-13057417 None:intergenic 35.0%
TACCAAAACCAACAAGCATA+TGG + chr2.1:13057536-13057555 MS.gene35784:CDS 35.0%
TCTTGCTAATGAAGCTTCTA+TGG + chr2.1:13057811-13057830 MS.gene35784:CDS 35.0%
! AACACAAGTTTTGCATTCTG+AGG - chr2.1:13057591-13057610 None:intergenic 35.0%
! AATTGCTGTGATGGGAAAAA+AGG + chr2.1:13057968-13057987 MS.gene35784:CDS 35.0%
! TTTTTCCCATCACAGCAATT+TGG - chr2.1:13057968-13057987 None:intergenic 35.0%
!! GATTGTAAGAAGTGTCTTGA+TGG + chr2.1:13057926-13057945 MS.gene35784:CDS 35.0%
!!! ATGCTTGTTGGTTTTGGTAT+TGG - chr2.1:13057535-13057554 None:intergenic 35.0%
!!! TGCTTGTTGGTTTTGGTATT+GGG - chr2.1:13057534-13057553 None:intergenic 35.0%
AAAAAAGGAGGCAGAGTTGT+TGG + chr2.1:13057983-13058002 MS.gene35784:CDS 40.0%
ACAAATGTGGAAAAGTGGGT+CGG - chr2.1:13057393-13057412 None:intergenic 40.0%
ATCTACAAAACCCCTTCAAC+AGG + chr2.1:13057482-13057501 MS.gene35784:CDS 40.0%
ATGTGATGTGAAGTTCTCAG+AGG - chr2.1:13057420-13057439 None:intergenic 40.0%
GAACTTCCAAATTGCTGTGA+TGG + chr2.1:13057959-13057978 MS.gene35784:CDS 40.0%
GGAGAATCAGAGAGAGTTTA+TGG + chr2.1:13057869-13057888 MS.gene35784:CDS 40.0%
TCTCAGAGGTTGAACAAATG+TGG - chr2.1:13057406-13057425 None:intergenic 40.0%
! AAAACCCCTTCAACAGGTTT+TGG + chr2.1:13057488-13057507 MS.gene35784:CDS 40.0%
ACTGCCAAAACCTGTTGAAG+GGG - chr2.1:13057495-13057514 None:intergenic 45.0%
CACTGCCAAAACCTGTTGAA+GGG - chr2.1:13057496-13057515 None:intergenic 45.0%
GCTAGTGGAGAGTTGAAGAT+TGG + chr2.1:13057848-13057867 MS.gene35784:CDS 45.0%
! TGCTGTGATGGGAAAAAAGG+AGG + chr2.1:13057971-13057990 MS.gene35784:CDS 45.0%
!!! GCCCATATGCTTGTTGGTTT+TGG - chr2.1:13057541-13057560 None:intergenic 45.0%
AAAGGAGGCAGAGTTGTTGG+TGG + chr2.1:13057986-13058005 MS.gene35784:CDS 50.0%
CCACTGCCAAAACCTGTTGA+AGG - chr2.1:13057497-13057516 None:intergenic 50.0%
GAGCTAGCCCATATGCTTGT+TGG - chr2.1:13057547-13057566 None:intergenic 50.0%
!! AGGTTTTGGCAGTGGATCAG+TGG + chr2.1:13057502-13057521 MS.gene35784:CDS 50.0%
!! CCTTCAACAGGTTTTGGCAG+TGG + chr2.1:13057494-13057513 MS.gene35784:CDS 50.0%
!! GGTTTTGGCAGTGGATCAGT+GGG + chr2.1:13057503-13057522 MS.gene35784:CDS 50.0%
!! TATGGGCTAGCTCTTTGTCG+TGG + chr2.1:13057554-13057573 MS.gene35784:CDS 50.0%
! GAAAAGTGGGTCGGCTCCAA+AGG - chr2.1:13057384-13057403 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 13057314 13058054 13057314 ID=MS.gene35784
chr2.1 mRNA 13057314 13058054 13057314 ID=MS.gene35784.t1;Parent=MS.gene35784
chr2.1 exon 13057314 13058054 13057314 ID=MS.gene35784.t1.exon1;Parent=MS.gene35784.t1
chr2.1 CDS 13057314 13058054 13057314 ID=cds.MS.gene35784.t1;Parent=MS.gene35784.t1
Gene Sequence

>MS.gene35784

ATGGGTTCCTCAAAGCTCTTTACGATTATTCTCTTCTCATTTACTTTTGCTTTCTTTATTCAAACAGCCTTTGGAGCCGACCCACTTTTCCACATTTGTTCAACCTCTGAGAACTTCACATCACATAGTCAATATGAATCGAACTTGAAAACACTCATCAACTCACTTATCTACAAAACCCCTTCAACAGGTTTTGGCAGTGGATCAGTGGGTCTGACCCAATACCAAAACCAACAAGCATATGGGCTAGCTCTTTGTCGTGGCGATGTATCAACCTCAGAATGCAAAACTTGTGTTTCACAAGCAACTAAAGAAATTCTCAATGTTTGTCCATATAAAAAGGGTGCCATTATATGGTACGATAATTGCATGTTCAAATATTTGGACAATGATTTCTTTGGTAAAATTGATAATACAAACAAGTTCGCTTTATTGAATGTACAAAATGTTAGTGATCCTATCAAATTCAACAACATGACTAAGGACTTATTGAGCTTTCTTGCTAATGAAGCTTCTATGGATAAAAAACTTTATGCTAGTGGAGAGTTGAAGATTGGAGAATCAGAGAGAGTTTATGGGCTAACTCAATGCACTAGAGACCTTTCTAGTGTTGATTGTAAGAAGTGTCTTGATGGTGCAATTAGTGAACTTCCAAATTGCTGTGATGGGAAAAAAGGAGGCAGAGTTGTTGGTGGAAGTTGCAATATTCGATATGAAATTTACCCTTTCGTTAGGGAGTAA
Protein sequence

>MS.gene35784.t1

MGSSKLFTIILFSFTFAFFIQTAFGADPLFHICSTSENFTSHSQYESNLKTLINSLIYKTPSTGFGSGSVGLTQYQNQQAYGLALCRGDVSTSECKTCVSQATKEILNVCPYKKGAIIWYDNCMFKYLDNDFFGKIDNTNKFALLNVQNVSDPIKFNNMTKDLLSFLANEASMDKKLYASGELKIGESERVYGLTQCTRDLSSVDCKKCLDGAISELPNCCDGKKGGRVVGGSCNIRYEIYPFVRE