Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35802.t1 | XP_013464983.1 | 99.3 | 307 | 2 | 0 | 1 | 307 | 1 | 307 | 2.00E-152 | 548.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35802.t1 | Q8VZU2 | 68.6 | 306 | 91 | 2 | 1 | 306 | 1 | 301 | 7.4e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35802.t1 | A0A072VC55 | 99.3 | 307 | 2 | 0 | 1 | 307 | 1 | 307 | 1.4e-152 | 548.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052533 | MS.gene35802 | 0.825771 | 3.91E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35802.t1 | MTR_2g088700 | 99.349 | 307 | 2 | 0 | 1 | 307 | 1 | 307 | 0.0 | 622 |
| MS.gene35802.t1 | MTR_2g088700 | 92.787 | 305 | 22 | 0 | 1 | 305 | 1 | 305 | 0.0 | 577 |
| MS.gene35802.t1 | MTR_6g028140 | 62.171 | 304 | 110 | 3 | 1 | 304 | 1 | 299 | 1.71e-123 | 356 |
| MS.gene35802.t1 | MTR_2g012270 | 43.854 | 301 | 163 | 1 | 1 | 301 | 1 | 295 | 8.24e-90 | 270 |
| MS.gene35802.t1 | MTR_4g090900 | 47.018 | 285 | 146 | 1 | 1 | 285 | 1 | 280 | 6.36e-89 | 268 |
| MS.gene35802.t1 | MTR_1g056560 | 43.730 | 311 | 169 | 2 | 1 | 305 | 1 | 311 | 2.35e-76 | 237 |
| MS.gene35802.t1 | MTR_5g012010 | 43.960 | 298 | 150 | 5 | 1 | 283 | 1 | 296 | 9.08e-75 | 232 |
| MS.gene35802.t1 | MTR_1g056550 | 42.160 | 287 | 162 | 2 | 1 | 284 | 1 | 286 | 1.95e-72 | 226 |
| MS.gene35802.t1 | MTR_7g106420 | 37.895 | 285 | 166 | 2 | 1 | 285 | 1 | 274 | 1.45e-61 | 197 |
| MS.gene35802.t1 | MTR_5g020670 | 35.315 | 286 | 171 | 5 | 1 | 282 | 1 | 276 | 4.17e-50 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35802.t1 | AT5G08080 | 68.301 | 306 | 92 | 2 | 1 | 306 | 1 | 301 | 1.43e-123 | 356 |
| MS.gene35802.t1 | AT5G08080 | 68.301 | 306 | 92 | 2 | 1 | 306 | 1 | 301 | 1.43e-123 | 356 |
| MS.gene35802.t1 | AT3G03800 | 61.842 | 304 | 112 | 2 | 1 | 304 | 1 | 300 | 5.40e-123 | 354 |
| MS.gene35802.t1 | AT3G03800 | 61.842 | 304 | 112 | 2 | 1 | 304 | 1 | 300 | 5.40e-123 | 354 |
| MS.gene35802.t1 | AT5G08080 | 65.300 | 317 | 94 | 3 | 1 | 306 | 1 | 312 | 1.75e-120 | 348 |
| MS.gene35802.t1 | AT1G61290 | 42.525 | 301 | 167 | 1 | 1 | 301 | 1 | 295 | 8.52e-87 | 262 |
| MS.gene35802.t1 | AT1G61290 | 42.525 | 301 | 167 | 1 | 1 | 301 | 1 | 295 | 8.52e-87 | 262 |
| MS.gene35802.t1 | AT1G11250 | 46.667 | 285 | 141 | 3 | 1 | 285 | 1 | 274 | 3.09e-85 | 258 |
| MS.gene35802.t1 | AT4G03330 | 44.406 | 286 | 154 | 2 | 1 | 285 | 1 | 282 | 6.07e-79 | 242 |
| MS.gene35802.t1 | AT3G11820 | 44.728 | 313 | 166 | 2 | 1 | 307 | 1 | 312 | 7.93e-77 | 238 |
| MS.gene35802.t1 | AT3G11820 | 46.909 | 275 | 146 | 0 | 33 | 307 | 7 | 281 | 2.20e-76 | 236 |
| MS.gene35802.t1 | AT3G52400 | 43.408 | 311 | 172 | 2 | 1 | 307 | 1 | 311 | 2.33e-73 | 229 |
| MS.gene35802.t1 | AT5G08080 | 61.951 | 205 | 73 | 2 | 1 | 205 | 1 | 200 | 4.69e-72 | 222 |
| MS.gene35802.t1 | AT5G08080 | 61.951 | 205 | 73 | 2 | 1 | 205 | 1 | 200 | 4.69e-72 | 222 |
| MS.gene35802.t1 | AT1G08560 | 38.832 | 291 | 165 | 4 | 1 | 283 | 1 | 286 | 4.60e-63 | 202 |
| MS.gene35802.t1 | AT2G18260 | 32.278 | 316 | 185 | 5 | 1 | 301 | 1 | 302 | 5.12e-50 | 168 |
| MS.gene35802.t1 | AT2G18260 | 32.278 | 316 | 185 | 5 | 1 | 301 | 1 | 302 | 5.12e-50 | 168 |
| MS.gene35802.t1 | AT5G16830 | 29.697 | 165 | 95 | 5 | 137 | 289 | 111 | 266 | 1.11e-11 | 64.7 |
Find 57 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTTCCAGTTTCTATC+AGG | 0.246226 | 2.4:-12720184 | None:intergenic |
| CTCATCATCTGGCCTATTTC+CGG | 0.248819 | 2.4:-12720061 | None:intergenic |
| TCCAGAAGAATTCTCGAAAA+TGG | 0.249054 | 2.4:+12721061 | MS.gene35802:CDS |
| CATTGTAACAATACCTTTCA+TGG | 0.265022 | 2.4:-12719135 | None:intergenic |
| TCAAAGAAGCAGTTCTGATA+TGG | 0.287239 | 2.4:+12718315 | MS.gene35802:CDS |
| ATTCTTCAGTTACCGGAAAT+AGG | 0.311336 | 2.4:+12720049 | MS.gene35802:intron |
| TCAATATCACCTTGTCTAGA+AGG | 0.318330 | 2.4:-12718277 | None:intergenic |
| AGATCTCATGACAGAGTTCC+AGG | 0.335090 | 2.4:+12719755 | MS.gene35802:CDS |
| CAATTTGTTTATCAGCATCT+TGG | 0.358355 | 2.4:-12718939 | None:intergenic |
| GTGGAAAGAAGAGTTATTAC+AGG | 0.384253 | 2.4:+12719902 | MS.gene35802:CDS |
| TAGACAAGGTGATATTGAAA+TGG | 0.390149 | 2.4:+12718282 | MS.gene35802:CDS |
| ATTGACCACCTGATAGAAAC+TGG | 0.395779 | 2.4:+12720176 | MS.gene35802:CDS |
| GAAGTGCAGTTGTCCCTCTC+TGG | 0.397740 | 2.4:-12721023 | None:intergenic |
| GAGCACTGTAGAAGAAATTC+AGG | 0.406577 | 2.4:+12720660 | MS.gene35802:CDS |
| ATTCATCTTGTATTCTTTGT+CGG | 0.416123 | 2.4:-12719868 | None:intergenic |
| ATAGTAGCTATCATAGTTGT+TGG | 0.420632 | 2.4:+12721114 | MS.gene35802:CDS |
| TTTGTTAGTGAGGCTAATCA+TGG | 0.423310 | 2.4:+12718250 | MS.gene35802:CDS |
| GAAAAGGATATTGATGAAGT+TGG | 0.433278 | 2.4:+12719406 | MS.gene35802:CDS |
| ATCAAACTCACCTCATCATC+TGG | 0.438481 | 2.4:-12720072 | None:intergenic |
| AAAACTTCTTGATTTACATC+AGG | 0.438716 | 2.4:+12720714 | MS.gene35802:CDS |
| TGATAGCTACTATTATTAAC+AGG | 0.438948 | 2.4:-12721104 | None:intergenic |
| TTGTTGGCGTTCTCAAACCT+TGG | 0.450158 | 2.4:+12721130 | MS.gene35802:CDS |
| AGACAAGGTGATATTGAAAT+GGG | 0.460114 | 2.4:+12718283 | MS.gene35802:CDS |
| TTTAGACAACATCGAAAGCC+AGG | 0.482075 | 2.4:+12720876 | MS.gene35802:CDS |
| AGATGAATATCGTGAGGTTG+TGG | 0.482461 | 2.4:+12719883 | MS.gene35802:CDS |
| CGCGCTACTTCAAAAGCTAA+AGG | 0.483869 | 2.4:+12718972 | MS.gene35802:CDS |
| CAAAGAAGCAGTTCTGATAT+GGG | 0.488978 | 2.4:+12718316 | MS.gene35802:CDS |
| CATTCTTGCTCTGTCAATAC+CGG | 0.495403 | 2.4:-12719619 | None:intergenic |
| CAGCAGGCAATTCTTGAAGC+AGG | 0.507428 | 2.4:+12720218 | MS.gene35802:CDS |
| CAAAAGCCTGGCTGTGAGAA+GGG | 0.509684 | 2.4:+12719594 | MS.gene35802:CDS |
| TGTTTCCAGTTTCTATCAGG+TGG | 0.513177 | 2.4:-12720181 | None:intergenic |
| CAACTAAGACTGCCATATCA+AGG | 0.520777 | 2.4:-12720837 | None:intergenic |
| TATTATTAACAGGATGATGA+TGG | 0.524137 | 2.4:-12721094 | None:intergenic |
| CTAAACAATAGACAAAAGCC+TGG | 0.535553 | 2.4:+12719582 | MS.gene35802:CDS |
| CTGCTTCAAGAATTGCCTGC+TGG | 0.537374 | 2.4:-12720217 | None:intergenic |
| GCAGGATTCATTTGTTAGTG+AGG | 0.542999 | 2.4:+12718240 | MS.gene35802:intron |
| TCTTGAAGCAGGCCGAGGAC+AGG | 0.543553 | 2.4:+12720229 | MS.gene35802:CDS |
| CGGAAATAGGCCAGATGATG+AGG | 0.545222 | 2.4:+12720062 | MS.gene35802:CDS |
| ACAAAAGCCTGGCTGTGAGA+AGG | 0.549254 | 2.4:+12719593 | MS.gene35802:CDS |
| CAGTGAGCAAATCTTCCAGC+AGG | 0.550714 | 2.4:+12720202 | MS.gene35802:CDS |
| AAGCAGTTCTGATATGGGAA+TGG | 0.561919 | 2.4:+12718321 | MS.gene35802:CDS |
| ACAAAAGCATCTGCCATGAA+AGG | 0.562432 | 2.4:+12719122 | MS.gene35802:CDS |
| CCGGTGCCCTTCTCACAGCC+AGG | 0.564232 | 2.4:-12719600 | None:intergenic |
| ATAAATCAAGTACCTGTCCT+CGG | 0.582937 | 2.4:-12720241 | None:intergenic |
| CCTGGCTGTGAGAAGGGCAC+CGG | 0.587319 | 2.4:+12719600 | MS.gene35802:CDS |
| TGCTGATAAACAAATTGAGA+AGG | 0.597365 | 2.4:+12718945 | MS.gene35802:CDS |
| AATATGAACTTACAGTGAGA+AGG | 0.599086 | 2.4:-12717870 | None:intergenic |
| CAGTCGATCATGTCCAGAGA+GGG | 0.599590 | 2.4:+12721010 | MS.gene35802:CDS |
| GCAATTCTTGAAGCAGGCCG+AGG | 0.602480 | 2.4:+12720224 | MS.gene35802:CDS |
| GGGGACTAAGAACTCTTCCA+AGG | 0.610257 | 2.4:-12721147 | None:intergenic |
| CATGGACAACCTTCTAGACA+AGG | 0.616783 | 2.4:+12718268 | MS.gene35802:CDS |
| AGTTGGAAAGATTGCACATG+GGG | 0.621884 | 2.4:+12719423 | MS.gene35802:CDS |
| GCAGTCTTAGTTGATGCTCA+AGG | 0.625652 | 2.4:+12720847 | MS.gene35802:CDS |
| GAAGTTGGAAAGATTGCACA+TGG | 0.661524 | 2.4:+12719421 | MS.gene35802:CDS |
| AATACAAGATGAATATCGTG+AGG | 0.666598 | 2.4:+12719877 | MS.gene35802:CDS |
| GCAGTCGATCATGTCCAGAG+AGG | 0.713009 | 2.4:+12721009 | MS.gene35802:CDS |
| AAGTTGGAAAGATTGCACAT+GGG | 0.717743 | 2.4:+12719422 | MS.gene35802:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACTTATTTAAAAAGTATA+TGG | + | chr2.4:12719983-12720002 | MS.gene35802:intron | 10.0% |
| !! | AAAAATCACTTAACTATATA+CGG | - | chr2.4:12720355-12720374 | None:intergenic | 15.0% |
| !! | AAAGTTTAATTCAGAAAATT+TGG | + | chr2.4:12720622-12720641 | MS.gene35802:intron | 15.0% |
| !! | AAGTTTAATTCAGAAAATTT+GGG | + | chr2.4:12720623-12720642 | MS.gene35802:intron | 15.0% |
| !! | AATCTGAAAAATAATATGAT+AGG | - | chr2.4:12720815-12720834 | None:intergenic | 15.0% |
| !! | TGTTATATAGATTTCAAATA+CGG | + | chr2.4:12719521-12719540 | MS.gene35802:intron | 15.0% |
| !!! | AATTTTACAAATTCAAATGT+TGG | - | chr2.4:12718562-12718581 | None:intergenic | 15.0% |
| !!! | TATTCATTTTTTTTCATAGT+AGG | + | chr2.4:12720465-12720484 | MS.gene35802:intron | 15.0% |
| !! | AAAAAAATACCAGTAAACTT+AGG | - | chr2.4:12718904-12718923 | None:intergenic | 20.0% |
| !! | AATATTTATCTAGTTGACAA+TGG | + | chr2.4:12720764-12720783 | MS.gene35802:intron | 20.0% |
| !! | ATATATATGCAGAAAAATCA+AGG | - | chr2.4:12720919-12720938 | None:intergenic | 20.0% |
| !! | ATCAAAATTAATCCCTATTT+AGG | + | chr2.4:12718077-12718096 | MS.gene35802:intron | 20.0% |
| !! | TTCAATGTAATCATATGTAT+CGG | - | chr2.4:12718473-12718492 | None:intergenic | 20.0% |
| !! | TTGAAAATTGAATTTAGGAA+AGG | - | chr2.4:12717950-12717969 | None:intergenic | 20.0% |
| !!! | AAAAATTCGATTTTGATTAC+TGG | + | chr2.4:12717913-12717932 | MS.gene35802:intron | 20.0% |
| !!! | AAAATCGAATTTTTTTTCTG+GGG | - | chr2.4:12717907-12717926 | None:intergenic | 20.0% |
| !!! | AAAATTCGATTTTGATTACT+GGG | + | chr2.4:12717914-12717933 | MS.gene35802:intron | 20.0% |
| !!! | AATTCATTATGATATTGACT+TGG | + | chr2.4:12718113-12718132 | MS.gene35802:intron | 20.0% |
| !!! | ATTCATTATGATATTGACTT+GGG | + | chr2.4:12718114-12718133 | MS.gene35802:intron | 20.0% |
| !!! | CAAAATCGAATTTTTTTTCT+GGG | - | chr2.4:12717908-12717927 | None:intergenic | 20.0% |
| !!! | GAAATCAATTTTAACTTTGA+AGG | - | chr2.4:12718046-12718065 | None:intergenic | 20.0% |
| !!! | TCAAAATCGAATTTTTTTTC+TGG | - | chr2.4:12717909-12717928 | None:intergenic | 20.0% |
| !!! | TTTTTGTAGATCAAATTCTA+AGG | + | chr2.4:12718194-12718213 | MS.gene35802:intron | 20.0% |
| !!! | TTTTTTGTTTTGTTTTTTGC+AGG | + | chr2.4:12718222-12718241 | MS.gene35802:intron | 20.0% |
| ! | AAAACTTCTTGATTTACATC+AGG | + | chr2.4:12720714-12720733 | MS.gene35802:CDS | 25.0% |
| ! | AACACAGTTAACTTTATCAA+GGG | - | chr2.4:12719943-12719962 | None:intergenic | 25.0% |
| ! | ACGGATAAAAAATAGTTAAC+CGG | + | chr2.4:12719540-12719559 | MS.gene35802:intron | 25.0% |
| ! | ATCACAAAGTTAAAAACACA+AGG | - | chr2.4:12720018-12720037 | None:intergenic | 25.0% |
| ! | ATTCATCTTGTATTCTTTGT+CGG | - | chr2.4:12719871-12719890 | None:intergenic | 25.0% |
| ! | ATTGAATATCCTAAGTTTAC+TGG | + | chr2.4:12718892-12718911 | MS.gene35802:intron | 25.0% |
| ! | CTCAGTTGAAAATTGAATTT+AGG | - | chr2.4:12717955-12717974 | None:intergenic | 25.0% |
| ! | GCAAAAACAAAATGGTTATA+AGG | - | chr2.4:12719039-12719058 | None:intergenic | 25.0% |
| ! | TAAGTTTGGCAAAAACAAAA+TGG | - | chr2.4:12719047-12719066 | None:intergenic | 25.0% |
| ! | TATTATTAACAGGATGATGA+TGG | - | chr2.4:12721097-12721116 | None:intergenic | 25.0% |
| ! | TCACAAAGTTAAAAACACAA+GGG | - | chr2.4:12720017-12720036 | None:intergenic | 25.0% |
| ! | TGAGATGATAAACATAAACT+TGG | - | chr2.4:12719820-12719839 | None:intergenic | 25.0% |
| ! | TGATAGCTACTATTATTAAC+AGG | - | chr2.4:12721107-12721126 | None:intergenic | 25.0% |
| ! | TTTAGTAACGGTTATAAGTT+TGG | - | chr2.4:12719061-12719080 | None:intergenic | 25.0% |
| !! | AATGGAAGCTTTTAATAAAC+AGG | + | chr2.4:12718339-12718358 | MS.gene35802:CDS | 25.0% |
| !! | CAATTTTATCACTATGATTC+TGG | + | chr2.4:12717995-12718014 | MS.gene35802:intron | 25.0% |
| !! | CTAAATTCAATTTTCAACTG+AGG | + | chr2.4:12717953-12717972 | MS.gene35802:intron | 25.0% |
| !! | TTTTCAGATTTACCTTGATA+TGG | + | chr2.4:12720825-12720844 | MS.gene35802:intron | 25.0% |
| !! | TTTTTCGTATTTTCATCTCA+TGG | + | chr2.4:12720370-12720389 | MS.gene35802:intron | 25.0% |
| !!! | AAATCGAATTTTTTTTCTGG+GGG | - | chr2.4:12717906-12717925 | None:intergenic | 25.0% |
| !!! | ATTAATCCCTATTTAGGTTT+TGG | + | chr2.4:12718083-12718102 | MS.gene35802:intron | 25.0% |
| !!! | TCTTTCTTTTTGATTTGACT+TGG | + | chr2.4:12718152-12718171 | MS.gene35802:intron | 25.0% |
| !!! | TGCATAAGTTTTGGTTTAAT+TGG | + | chr2.4:12720130-12720149 | MS.gene35802:intron | 25.0% |
| !!! | TTAATCCCTATTTAGGTTTT+GGG | + | chr2.4:12718084-12718103 | MS.gene35802:intron | 25.0% |
| AAACACCCAAAACCTAAATA+GGG | - | chr2.4:12718092-12718111 | None:intergenic | 30.0% | |
| AAACCAAAACTTATGCATAG+CGG | - | chr2.4:12720127-12720146 | None:intergenic | 30.0% | |
| AAATAGATGTGATGTCAGAA+TGG | - | chr2.4:12719319-12719338 | None:intergenic | 30.0% | |
| AATACAAGATGAATATCGTG+AGG | + | chr2.4:12719877-12719896 | MS.gene35802:CDS | 30.0% | |
| AATATGAACTTACAGTGAGA+AGG | - | chr2.4:12717873-12717892 | None:intergenic | 30.0% | |
| ACACAGTTAACTTTATCAAG+GGG | - | chr2.4:12719942-12719961 | None:intergenic | 30.0% | |
| AGACAAGGTGATATTGAAAT+GGG | + | chr2.4:12718283-12718302 | MS.gene35802:CDS | 30.0% | |
| AGAGACAAAATCAATTCCAA+TGG | + | chr2.4:12718732-12718751 | MS.gene35802:intron | 30.0% | |
| ATAGTAGCTATCATAGTTGT+TGG | + | chr2.4:12721114-12721133 | MS.gene35802:CDS | 30.0% | |
| ATTCTGCATAAAACATATCC+CGG | - | chr2.4:12719562-12719581 | None:intergenic | 30.0% | |
| CAACACAGTTAACTTTATCA+AGG | - | chr2.4:12719944-12719963 | None:intergenic | 30.0% | |
| CATATTTGAGTGATTTCCAT+TGG | - | chr2.4:12718751-12718770 | None:intergenic | 30.0% | |
| CATTGTAACAATACCTTTCA+TGG | - | chr2.4:12719138-12719157 | None:intergenic | 30.0% | |
| CGGATAAAAAATAGTTAACC+GGG | + | chr2.4:12719541-12719560 | MS.gene35802:intron | 30.0% | |
| GAAAAGGATATTGATGAAGT+TGG | + | chr2.4:12719406-12719425 | MS.gene35802:CDS | 30.0% | |
| GAAACTTCTAATTCGCATTA+TGG | - | chr2.4:12720503-12720522 | None:intergenic | 30.0% | |
| GTTCAATTTGCGTTAATAAG+AGG | + | chr2.4:12720968-12720987 | MS.gene35802:intron | 30.0% | |
| TAGACAAGGTGATATTGAAA+TGG | + | chr2.4:12718282-12718301 | MS.gene35802:CDS | 30.0% | |
| TATCAAAAAGAGGATGGAAA+AGG | + | chr2.4:12719390-12719409 | MS.gene35802:CDS | 30.0% | |
| TGATTTACATCAGGTTTACT+TGG | + | chr2.4:12720723-12720742 | MS.gene35802:intron | 30.0% | |
| TGCTGATAAACAAATTGAGA+AGG | + | chr2.4:12718945-12718964 | MS.gene35802:CDS | 30.0% | |
| TTCATTATACCCTGTATGTT+TGG | - | chr2.4:12718827-12718846 | None:intergenic | 30.0% | |
| TTGAATGTAACAATCACGTT+TGG | + | chr2.4:12718661-12718680 | MS.gene35802:intron | 30.0% | |
| ! | CAATTTGTTTATCAGCATCT+TGG | - | chr2.4:12718942-12718961 | None:intergenic | 30.0% |
| ! | GCAAAAAGTGCATTTAGTAA+CGG | - | chr2.4:12719073-12719092 | None:intergenic | 30.0% |
| ! | TTAAAAGTGAGTTGAATGTG+AGG | + | chr2.4:12718590-12718609 | MS.gene35802:intron | 30.0% |
| !! | ATCTCTGAACTTTTTAGTCA+AGG | - | chr2.4:12719739-12719758 | None:intergenic | 30.0% |
| !! | TTACTAAATGCACTTTTTGC+AGG | + | chr2.4:12719073-12719092 | MS.gene35802:intron | 30.0% |
| !!! | AATCGAATTTTTTTTCTGGG+GGG | - | chr2.4:12717905-12717924 | None:intergenic | 30.0% |
| !!! | TCATAAGATTTTGCTGTTAC+TGG | + | chr2.4:12719205-12719224 | MS.gene35802:intron | 30.0% |
| AAGTTAACTGTGTTGCACTA+TGG | + | chr2.4:12719949-12719968 | MS.gene35802:intron | 35.0% | |
| AAGTTGGAAAGATTGCACAT+GGG | + | chr2.4:12719422-12719441 | MS.gene35802:CDS | 35.0% | |
| ACTGTGAAACCAAACATACA+GGG | + | chr2.4:12718815-12718834 | MS.gene35802:intron | 35.0% | |
| ATAAATCAAGTACCTGTCCT+CGG | - | chr2.4:12720244-12720263 | None:intergenic | 35.0% | |
| ATAGCTGAGAATGATGTAAG+AGG | - | chr2.4:12719373-12719392 | None:intergenic | 35.0% | |
| ATGTGATGTCAGAATGGAAA+AGG | - | chr2.4:12719313-12719332 | None:intergenic | 35.0% | |
| ATTCTTCAGTTACCGGAAAT+AGG | + | chr2.4:12720049-12720068 | MS.gene35802:intron | 35.0% | |
| CATTCTCAGCTATCAAAAAG+AGG | + | chr2.4:12719380-12719399 | MS.gene35802:intron | 35.0% | |
| CTAAACAATAGACAAAAGCC+TGG | + | chr2.4:12719582-12719601 | MS.gene35802:CDS | 35.0% | |
| GAAAAACAGCTTCTAGTGTT+AGG | - | chr2.4:12719798-12719817 | None:intergenic | 35.0% | |
| GAAACACCCAAAACCTAAAT+AGG | - | chr2.4:12718093-12718112 | None:intergenic | 35.0% | |
| GTATAGATACACCTCAGATT+AGG | + | chr2.4:12718406-12718425 | MS.gene35802:intron | 35.0% | |
| GTGGAAAGAAGAGTTATTAC+AGG | + | chr2.4:12719902-12719921 | MS.gene35802:CDS | 35.0% | |
| GTTTACTTGGAAGAAGATCT+TGG | + | chr2.4:12720736-12720755 | MS.gene35802:intron | 35.0% | |
| TAAAGTTAACTGTGTGTGTC+TGG | + | chr2.4:12718772-12718791 | MS.gene35802:intron | 35.0% | |
| TACTGTGAAACCAAACATAC+AGG | + | chr2.4:12718814-12718833 | MS.gene35802:intron | 35.0% | |
| TCAATATCACCTTGTCTAGA+AGG | - | chr2.4:12718280-12718299 | None:intergenic | 35.0% | |
| TCCAGAAGAATTCTCGAAAA+TGG | + | chr2.4:12721061-12721080 | MS.gene35802:CDS | 35.0% | |
| TGACTTGATTCTTCAGTTAC+CGG | + | chr2.4:12720042-12720061 | MS.gene35802:intron | 35.0% | |
| TTTGTTAGTGAGGCTAATCA+TGG | + | chr2.4:12718250-12718269 | MS.gene35802:CDS | 35.0% | |
| ! | CAAAGAAGCAGTTCTGATAT+GGG | + | chr2.4:12718316-12718335 | MS.gene35802:CDS | 35.0% |
| ! | TATCCGCTATGCATAAGTTT+TGG | + | chr2.4:12720121-12720140 | MS.gene35802:intron | 35.0% |
| ! | TCAAAGAAGCAGTTCTGATA+TGG | + | chr2.4:12718315-12718334 | MS.gene35802:CDS | 35.0% |
| ! | TGTATGTTTGGTTTCACAGT+AGG | - | chr2.4:12718815-12718834 | None:intergenic | 35.0% |
| ! | TTGTTTCTTGAGCTTAAAGG+AGG | + | chr2.4:12720428-12720447 | MS.gene35802:intron | 35.0% |
| !! | GTGTTGTTTCTTGAGCTTAA+AGG | + | chr2.4:12720425-12720444 | MS.gene35802:intron | 35.0% |
| !! | TCCATTTTCGAGAATTCTTC+TGG | - | chr2.4:12721065-12721084 | None:intergenic | 35.0% |
| !!! | CGATTTGTTTTTTGCTTGTG+TGG | + | chr2.4:12720576-12720595 | MS.gene35802:intron | 35.0% |
| AGATGAATATCGTGAGGTTG+TGG | + | chr2.4:12719883-12719902 | MS.gene35802:CDS | 40.0% | |
| AGTTGGAAAGATTGCACATG+GGG | + | chr2.4:12719423-12719442 | MS.gene35802:CDS | 40.0% | |
| ATCAAACTCACCTCATCATC+TGG | - | chr2.4:12720075-12720094 | None:intergenic | 40.0% | |
| ATTGACCACCTGATAGAAAC+TGG | + | chr2.4:12720176-12720195 | MS.gene35802:CDS | 40.0% | |
| CAACTAAGACTGCCATATCA+AGG | - | chr2.4:12720840-12720859 | None:intergenic | 40.0% | |
| CACTGTTTCCAGTTTCTATC+AGG | - | chr2.4:12720187-12720206 | None:intergenic | 40.0% | |
| CATTCTTGCTCTGTCAATAC+CGG | - | chr2.4:12719622-12719641 | None:intergenic | 40.0% | |
| CTCAGCTATCAAAAAGAGGA+TGG | + | chr2.4:12719384-12719403 | MS.gene35802:intron | 40.0% | |
| GAAGTTGGAAAGATTGCACA+TGG | + | chr2.4:12719421-12719440 | MS.gene35802:CDS | 40.0% | |
| GTCAAGGAACTGCAATTTCA+AGG | - | chr2.4:12719723-12719742 | None:intergenic | 40.0% | |
| GTGTTTCAGACTAACATACC+TGG | - | chr2.4:12719776-12719795 | None:intergenic | 40.0% | |
| TCATCTCATGGACGAGATAT+TGG | + | chr2.4:12720382-12720401 | MS.gene35802:intron | 40.0% | |
| TGTTTCCAGTTTCTATCAGG+TGG | - | chr2.4:12720184-12720203 | None:intergenic | 40.0% | |
| TTTAGACAACATCGAAAGCC+AGG | + | chr2.4:12720876-12720895 | MS.gene35802:CDS | 40.0% | |
| ! | AAAGTGAGTTGAATGTGAGG+TGG | + | chr2.4:12718593-12718612 | MS.gene35802:intron | 40.0% |
| ! | AAGCAGTTCTGATATGGGAA+TGG | + | chr2.4:12718321-12718340 | MS.gene35802:CDS | 40.0% |
| ! | ATATGTATCGGTGTCTTCGT+CGG | - | chr2.4:12718461-12718480 | None:intergenic | 40.0% |
| ! | CGTTAATAAGAGGCTTGTTC+AGG | + | chr2.4:12720978-12720997 | MS.gene35802:intron | 40.0% |
| ! | CTGTTACTGGTTACTGAATC+AGG | + | chr2.4:12719218-12719237 | MS.gene35802:intron | 40.0% |
| ! | CTTTTTGCAGGAAGCTAATG+AGG | + | chr2.4:12719085-12719104 | MS.gene35802:intron | 40.0% |
| ! | GAGCACTGTAGAAGAAATTC+AGG | + | chr2.4:12720660-12720679 | MS.gene35802:CDS | 40.0% |
| ! | GCAGGATTCATTTGTTAGTG+AGG | + | chr2.4:12718240-12718259 | MS.gene35802:intron | 40.0% |
| !! | ACAAAAGCATCTGCCATGAA+AGG | + | chr2.4:12719122-12719141 | MS.gene35802:CDS | 40.0% |
| !! | CAGAAAATTTGGGTTGTTGC+AGG | + | chr2.4:12720633-12720652 | MS.gene35802:intron | 40.0% |
| !!! | CTTTAGCTTTTGAAGTAGCG+CGG | - | chr2.4:12718974-12718993 | None:intergenic | 40.0% |
| AGATCTCATGACAGAGTTCC+AGG | + | chr2.4:12719755-12719774 | MS.gene35802:CDS | 45.0% | |
| CATGGACAACCTTCTAGACA+AGG | + | chr2.4:12718268-12718287 | MS.gene35802:CDS | 45.0% | |
| CGCGCTACTTCAAAAGCTAA+AGG | + | chr2.4:12718972-12718991 | MS.gene35802:CDS | 45.0% | |
| CTCATCATCTGGCCTATTTC+CGG | - | chr2.4:12720064-12720083 | None:intergenic | 45.0% | |
| TCATGGACGAGATATTGGTG+TGG | + | chr2.4:12720387-12720406 | MS.gene35802:intron | 45.0% | |
| TTGTTGGCGTTCTCAAACCT+TGG | + | chr2.4:12721130-12721149 | MS.gene35802:CDS | 45.0% | |
| ! | GCAGTCTTAGTTGATGCTCA+AGG | + | chr2.4:12720847-12720866 | MS.gene35802:CDS | 45.0% |
| !!! | TTTTCAAAATAAAAAAAATA+CGG | - | chr2.4:12720281-12720300 | None:intergenic | 5.0% |
| ACAAAAGCCTGGCTGTGAGA+AGG | + | chr2.4:12719593-12719612 | MS.gene35802:CDS | 50.0% | |
| CAAAAGCCTGGCTGTGAGAA+GGG | + | chr2.4:12719594-12719613 | MS.gene35802:CDS | 50.0% | |
| CAGCAGGCAATTCTTGAAGC+AGG | + | chr2.4:12720218-12720237 | MS.gene35802:CDS | 50.0% | |
| CAGTCGATCATGTCCAGAGA+GGG | + | chr2.4:12721010-12721029 | MS.gene35802:CDS | 50.0% | |
| CAGTGAGCAAATCTTCCAGC+AGG | + | chr2.4:12720202-12720221 | MS.gene35802:CDS | 50.0% | |
| CATGATAGGTATCCGACACC+AGG | - | chr2.4:12718437-12718456 | None:intergenic | 50.0% | |
| CGAGATATTGGTGTGGTGAG+CGG | + | chr2.4:12720394-12720413 | MS.gene35802:intron | 50.0% | |
| CGGAAATAGGCCAGATGATG+AGG | + | chr2.4:12720062-12720081 | MS.gene35802:CDS | 50.0% | |
| CTGCTTCAAGAATTGCCTGC+TGG | - | chr2.4:12720220-12720239 | None:intergenic | 50.0% | |
| GATGAGCGAAGACACAAACC+TGG | - | chr2.4:12720897-12720916 | None:intergenic | 50.0% | |
| GTGTCTTCGTCGGACATGAT+AGG | - | chr2.4:12718451-12718470 | None:intergenic | 50.0% | |
| TGTTCGTGTCTGTGCTGCAT+AGG | + | chr2.4:12718529-12718548 | MS.gene35802:intron | 50.0% | |
| ACCAGGACACGCCTAATCTG+AGG | - | chr2.4:12718420-12718439 | None:intergenic | 55.0% | |
| ACCTCAGATTAGGCGTGTCC+TGG | + | chr2.4:12718416-12718435 | MS.gene35802:intron | 55.0% | |
| GAAGTGCAGTTGTCCCTCTC+TGG | - | chr2.4:12721026-12721045 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCCTGGTGT+CGG | + | chr2.4:12718422-12718441 | MS.gene35802:intron | 55.0% | |
| GCAATTCTTGAAGCAGGCCG+AGG | + | chr2.4:12720224-12720243 | MS.gene35802:CDS | 55.0% | |
| GCAGTCGATCATGTCCAGAG+AGG | + | chr2.4:12721009-12721028 | MS.gene35802:CDS | 55.0% | |
| TCTTGAAGCAGGCCGAGGAC+AGG | + | chr2.4:12720229-12720248 | MS.gene35802:CDS | 60.0% | |
| ! | CCTGGCTGTGAGAAGGGCAC+CGG | + | chr2.4:12719600-12719619 | MS.gene35802:CDS | 65.0% |
| CCGGTGCCCTTCTCACAGCC+AGG | - | chr2.4:12719603-12719622 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 12717862 | 12721164 | 12717862 | ID=MS.gene35802 |
| chr2.4 | mRNA | 12717862 | 12721164 | 12717862 | ID=MS.gene35802.t1;Parent=MS.gene35802 |
| chr2.4 | exon | 12717862 | 12717879 | 12717862 | ID=MS.gene35802.t1.exon1;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12717862 | 12717879 | 12717862 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12718244 | 12718360 | 12718244 | ID=MS.gene35802.t1.exon2;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12718244 | 12718360 | 12718244 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12718937 | 12718993 | 12718937 | ID=MS.gene35802.t1.exon3;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12718937 | 12718993 | 12718937 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12719095 | 12719143 | 12719095 | ID=MS.gene35802.t1.exon4;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12719095 | 12719143 | 12719095 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12719389 | 12719477 | 12719389 | ID=MS.gene35802.t1.exon5;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12719389 | 12719477 | 12719389 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12719579 | 12719652 | 12719579 | ID=MS.gene35802.t1.exon6;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12719579 | 12719652 | 12719579 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12719734 | 12719776 | 12719734 | ID=MS.gene35802.t1.exon7;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12719734 | 12719776 | 12719734 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12719863 | 12719923 | 12719863 | ID=MS.gene35802.t1.exon8;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12719863 | 12719923 | 12719863 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12720058 | 12720083 | 12720058 | ID=MS.gene35802.t1.exon9;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12720058 | 12720083 | 12720058 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12720173 | 12720250 | 12720173 | ID=MS.gene35802.t1.exon10;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12720173 | 12720250 | 12720173 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12720655 | 12720735 | 12720655 | ID=MS.gene35802.t1.exon11;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12720655 | 12720735 | 12720655 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12720832 | 12720897 | 12720832 | ID=MS.gene35802.t1.exon12;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12720832 | 12720897 | 12720832 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| chr2.4 | exon | 12721000 | 12721164 | 12721000 | ID=MS.gene35802.t1.exon13;Parent=MS.gene35802.t1 |
| chr2.4 | CDS | 12721000 | 12721164 | 12721000 | ID=cds.MS.gene35802.t1;Parent=MS.gene35802.t1 |
| Gene Sequence |
| Protein sequence |
