Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35819.t1 | XP_003596988.1 | 90.5 | 979 | 8 | 3 | 1 | 894 | 1 | 979 | 0.00E+00 | 1741.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35819.t1 | Q9SIB9 | 77.6 | 959 | 125 | 5 | 26 | 894 | 32 | 990 | 0.0e+00 | 1482.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35819.t1 | G7ITZ5 | 90.5 | 979 | 8 | 3 | 1 | 894 | 1 | 979 | 0.0e+00 | 1741.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052361 | MS.gene35819 | 0.82239 | 2.43E-53 | -1.69E-46 |
MS.gene054016 | MS.gene35819 | 0.821491 | 3.93E-53 | -1.69E-46 |
MS.gene054017 | MS.gene35819 | 0.99455 | 3.51E-208 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35819.t1 | MTR_2g088360 | 88.662 | 979 | 26 | 6 | 1 | 894 | 1 | 979 | 0.0 | 1733 |
MS.gene35819.t1 | MTR_4g048190 | 79.236 | 968 | 107 | 7 | 15 | 894 | 18 | 979 | 0.0 | 1538 |
MS.gene35819.t1 | MTR_5g022940 | 75.335 | 896 | 135 | 6 | 83 | 892 | 2 | 897 | 0.0 | 1372 |
MS.gene35819.t1 | MTR_1g075520 | 67.184 | 902 | 203 | 8 | 79 | 894 | 1 | 895 | 0.0 | 1209 |
MS.gene35819.t1 | MTR_5g022940 | 74.653 | 793 | 116 | 5 | 185 | 892 | 1 | 793 | 0.0 | 1205 |
MS.gene35819.t1 | MTR_2g067620 | 72.444 | 577 | 57 | 10 | 136 | 631 | 134 | 689 | 0.0 | 761 |
MS.gene35819.t1 | MTR_2g067620 | 75.904 | 166 | 5 | 2 | 764 | 894 | 700 | 865 | 3.79e-66 | 238 |
MS.gene35819.t1 | MTR_4g115490 | 73.810 | 126 | 25 | 2 | 598 | 722 | 154 | 272 | 4.25e-53 | 187 |
MS.gene35819.t1 | MTR_4g074000 | 43.624 | 149 | 65 | 3 | 702 | 832 | 1 | 148 | 1.73e-23 | 100 |
MS.gene35819.t1 | MTR_1g045750 | 26.503 | 366 | 195 | 13 | 264 | 589 | 166 | 497 | 1.85e-18 | 90.1 |
MS.gene35819.t1 | MTR_1g073200 | 27.273 | 363 | 214 | 12 | 264 | 589 | 170 | 519 | 8.82e-17 | 85.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35819.t1 | AT2G05710 | 77.385 | 933 | 125 | 6 | 48 | 894 | 58 | 990 | 0.0 | 1471 |
MS.gene35819.t1 | AT4G26970 | 71.188 | 951 | 189 | 6 | 29 | 894 | 45 | 995 | 0.0 | 1377 |
MS.gene35819.t1 | AT4G35830 | 74.805 | 897 | 141 | 6 | 83 | 894 | 2 | 898 | 0.0 | 1365 |
MS.gene35819.t1 | AT4G35830 | 73.962 | 795 | 122 | 6 | 185 | 894 | 1 | 795 | 0.0 | 1191 |
MS.gene35819.t1 | AT5G54950 | 75.439 | 57 | 14 | 0 | 817 | 873 | 1 | 57 | 1.11e-24 | 98.6 |
MS.gene35819.t1 | AT4G13430 | 26.448 | 397 | 225 | 13 | 225 | 589 | 140 | 501 | 2.32e-17 | 86.7 |
Find 273 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAATTCTCTCAAAACTTT+TGG | 0.200994 | 2.1:-13454318 | None:intergenic |
GCCTATTGCCTGTTGAATTT+TGG | 0.202495 | 2.1:+13453362 | MS.gene35819:CDS |
GCCAATATGTCTCCTGAATA+TGG | 0.241612 | 2.1:+13449511 | MS.gene35819:CDS |
AAGCCTGGTGGTGGTGAATT+TGG | 0.262576 | 2.1:+13447735 | MS.gene35819:CDS |
ACAAGTCTTGCTCCTGGTTC+TGG | 0.266793 | 2.1:+13451074 | MS.gene35819:CDS |
AGGGCAGTATCTTGCCTCTT+TGG | 0.272951 | 2.1:-13449914 | None:intergenic |
ATGTTTACTTGAGGGATATT+TGG | 0.273088 | 2.1:+13453022 | MS.gene35819:CDS |
TAACTGTCACACAAATTCTT+AGG | 0.279077 | 2.1:+13449325 | MS.gene35819:CDS |
ACCACATGTATTGGCAATTC+AGG | 0.281196 | 2.1:+13451316 | MS.gene35819:CDS |
CTCGTTGTTCCTCCTGGTTC+TGG | 0.283190 | 2.1:+13448745 | MS.gene35819:CDS |
CCCATGGTTGCTCCATATTC+AGG | 0.293010 | 2.1:-13449523 | None:intergenic |
GAGTCGCTGGATGGGGTGTT+GGG | 0.293228 | 2.1:+13448990 | MS.gene35819:CDS |
GAGAATTCATCGCAGTAATT+TGG | 0.293240 | 2.1:+13454331 | MS.gene35819:CDS |
GAATGCAGTGCAGGCTAATA+TGG | 0.306167 | 2.1:+13448651 | MS.gene35819:CDS |
AAGAAGGACTTCAACTCTTA+TGG | 0.309032 | 2.1:+13453476 | MS.gene35819:CDS |
ATTCCCCTTTGCTTCAAATC+TGG | 0.321664 | 2.1:+13454368 | MS.gene35819:CDS |
GTTGTGGCTTATGCTCTTGC+TGG | 0.322295 | 2.1:+13451625 | MS.gene35819:CDS |
GGAGTCGCTGGATGGGGTGT+TGG | 0.326677 | 2.1:+13448989 | MS.gene35819:CDS |
AGTCCCAGCTGTTGTTGATT+TGG | 0.331621 | 2.1:+13448250 | MS.gene35819:CDS |
TGACAGAGATACAAGGCTTC+AGG | 0.333044 | 2.1:+13454081 | MS.gene35819:intron |
CAACATCTGCTTTAGTAACT+TGG | 0.337431 | 2.1:-13448038 | None:intergenic |
TCCATATTCAGGAGACATAT+TGG | 0.356776 | 2.1:-13449512 | None:intergenic |
CAATTTGTTTGCCCTGAGAT+AGG | 0.357810 | 2.1:-13449707 | None:intergenic |
CTTAGGAAACATGGTGTTGT+AGG | 0.358938 | 2.1:+13449342 | MS.gene35819:CDS |
GCTTCTGCTATCTCAGAAAA+TGG | 0.360827 | 2.1:+13451358 | MS.gene35819:CDS |
TTACAATACCTCAAGCTAAC+TGG | 0.361768 | 2.1:+13449571 | MS.gene35819:CDS |
GGCTTCAATATTGTTGGATT+CGG | 0.364215 | 2.1:+13451289 | MS.gene35819:CDS |
CATCGCAAGATCGCCACTTC+CGG | 0.365943 | 2.1:+13446632 | MS.gene35819:CDS |
AAAACCTCTCCTTGTTTCTC+TGG | 0.366881 | 2.1:-13448684 | None:intergenic |
GTGAATTATCGTTGGCTGAC+AGG | 0.368225 | 2.1:+13449479 | MS.gene35819:CDS |
GCCCTCAAAATTACGGTTCC+CGG | 0.379970 | 2.1:-13451554 | None:intergenic |
TCTAGAAAGAGGAAATAGTT+TGG | 0.380399 | 2.1:-13446432 | None:intergenic |
CTCTTTGGTCCTGAGATACA+TGG | 0.380632 | 2.1:-13449899 | None:intergenic |
TACATATGAAGCTATTACTA+AGG | 0.380840 | 2.1:+13453201 | MS.gene35819:CDS |
GAGCAAGGCTTCAATATTGT+TGG | 0.381018 | 2.1:+13451283 | MS.gene35819:CDS |
GATGGAGTCACGGCGTCCTT+TGG | 0.386324 | 2.1:+13446549 | MS.gene35819:CDS |
GGTGGAACGGGCGGCGTTAG+CGG | 0.391565 | 2.1:-13446519 | None:intergenic |
TGCCTCCCCTCCATTGGTTG+TGG | 0.396095 | 2.1:+13451609 | MS.gene35819:CDS |
CATGCCACCATTGTGCTGGC+TGG | 0.398424 | 2.1:+13454105 | MS.gene35819:CDS |
GCCCATCAATCATAGTTGTA+TGG | 0.399890 | 2.1:-13448964 | None:intergenic |
GGCGTTAGCGGCGGCGGATG+AGG | 0.400584 | 2.1:-13446507 | None:intergenic |
ATGGTGTTACCCGGTGTTGT+TGG | 0.400750 | 2.1:+13449249 | MS.gene35819:CDS |
CTTTGCTCCAGGCAATGGTA+TGG | 0.401240 | 2.1:+13449456 | MS.gene35819:intron |
GACCCTTGGCTGCCCAATCC+TGG | 0.401328 | 2.1:-13454151 | None:intergenic |
AGTCGCTGGATGGGGTGTTG+GGG | 0.406574 | 2.1:+13448991 | MS.gene35819:CDS |
TGTTGGAATGTGCACAGTCT+TGG | 0.407414 | 2.1:-13453588 | None:intergenic |
GTTGTTGGGTTCAAGTTGTC+TGG | 0.407565 | 2.1:+13449264 | MS.gene35819:CDS |
GTTGGAATGTGCACAGTCTT+GGG | 0.410552 | 2.1:-13453587 | None:intergenic |
TGAAAGAAATGAAGTCTGAT+TGG | 0.410840 | 2.1:+13450035 | MS.gene35819:CDS |
TCTCTCAATGATCCGAGAAT+TGG | 0.411423 | 2.1:+13447777 | MS.gene35819:CDS |
GTAGCATCTGCTGTGCTGTC+CGG | 0.413083 | 2.1:+13451535 | MS.gene35819:CDS |
TGTAATGTTACATGATCTAC+AGG | 0.417998 | 2.1:-13449553 | None:intergenic |
CAGGTCAATCTTGAATATCT+TGG | 0.418183 | 2.1:+13448881 | MS.gene35819:intron |
CGCAGTAATTTGGTAGGAAT+GGG | 0.418887 | 2.1:+13454341 | MS.gene35819:CDS |
CTTGTCAAGTTTCCCTTGAA+AGG | 0.419364 | 2.1:-13447705 | None:intergenic |
GTCGCTGGATGGGGTGTTGG+GGG | 0.419966 | 2.1:+13448992 | MS.gene35819:CDS |
AGGGCATGCCACCATTGTGC+TGG | 0.422305 | 2.1:+13454101 | MS.gene35819:CDS |
CTTGTTTACAATTCGTATGT+TGG | 0.422861 | 2.1:-13453543 | None:intergenic |
TCCCATACAACTATGATTGA+TGG | 0.423307 | 2.1:+13448962 | MS.gene35819:CDS |
AAATTCACCACCACCAGGCT+TGG | 0.423386 | 2.1:-13447733 | None:intergenic |
CTCTATCCTGACAGTGTGGT+TGG | 0.425659 | 2.1:+13448932 | MS.gene35819:CDS |
AAGACTGTGCACATTCCAAC+AGG | 0.426168 | 2.1:+13453590 | MS.gene35819:CDS |
TGATCAACAACTAGATCAAC+AGG | 0.426916 | 2.1:-13448598 | None:intergenic |
TACTGTCACCAAAATTCAAC+AGG | 0.429302 | 2.1:-13453370 | None:intergenic |
TTTCCACCCCACGCTGCATA+AGG | 0.429814 | 2.1:-13453454 | None:intergenic |
CTATCTTGCCTCCCCTCCAT+TGG | 0.433525 | 2.1:+13451603 | MS.gene35819:CDS |
CCGGGTAACACCATGCTCAT+AGG | 0.436873 | 2.1:-13449240 | None:intergenic |
ACGGGCGGCGTTAGCGGCGG+CGG | 0.437741 | 2.1:-13446513 | None:intergenic |
ACCAAAATTCAACAGGCAAT+AGG | 0.439902 | 2.1:-13453363 | None:intergenic |
TCGCAGTAATTTGGTAGGAA+TGG | 0.441035 | 2.1:+13454340 | MS.gene35819:CDS |
TGGGCTTGGAGTCGCTGGAT+GGG | 0.441530 | 2.1:+13448982 | MS.gene35819:CDS |
AATATGCTCGTTGTTCCTCC+TGG | 0.443434 | 2.1:+13448739 | MS.gene35819:CDS |
GACTTTGAAAAGGAGCCGTT+AGG | 0.444702 | 2.1:+13452979 | MS.gene35819:CDS |
ATCTGAGGACGGAGAGAGAC+AGG | 0.445324 | 2.1:-13446578 | None:intergenic |
AATACGGCAGTGGAAGTTCC+AGG | 0.446042 | 2.1:+13454133 | MS.gene35819:CDS |
AAGCTATTGAACGGCGAAGT+TGG | 0.446095 | 2.1:+13453563 | MS.gene35819:CDS |
CCATCGGTTAACGGTGGAAC+GGG | 0.447523 | 2.1:-13446531 | None:intergenic |
AGCTGGTGAAAATCCTTTCA+AGG | 0.448607 | 2.1:+13447692 | MS.gene35819:intron |
CAATGATAGAGGCCTATCTC+AGG | 0.454653 | 2.1:+13449695 | MS.gene35819:CDS |
TCTATCCTGACAGTGTGGTT+GGG | 0.455891 | 2.1:+13448933 | MS.gene35819:CDS |
GGGCTTGGAGTCGCTGGATG+GGG | 0.456615 | 2.1:+13448983 | MS.gene35819:CDS |
ATGGGCTTGGAGTCGCTGGA+TGG | 0.459040 | 2.1:+13448981 | MS.gene35819:CDS |
TAGCATCTGCTGTGCTGTCC+GGG | 0.459362 | 2.1:+13451536 | MS.gene35819:CDS |
GGTGAGGATGCTGACACCTT+GGG | 0.460474 | 2.1:+13454389 | MS.gene35819:CDS |
CAAGCCAAATCAACAACAGC+TGG | 0.461130 | 2.1:-13448254 | None:intergenic |
TCACGAGCCTCCATACTTCA+AGG | 0.461990 | 2.1:+13453298 | MS.gene35819:intron |
CCACATGTATTGGCAATTCA+GGG | 0.462224 | 2.1:+13451317 | MS.gene35819:CDS |
TTTGCTCCAGGCAATGGTAT+GGG | 0.463247 | 2.1:+13449457 | MS.gene35819:intron |
TGGTGTTACCCGGTGTTGTT+GGG | 0.465294 | 2.1:+13449250 | MS.gene35819:CDS |
CTTGTAATTCGTTCCACATA+GGG | 0.465949 | 2.1:-13453228 | None:intergenic |
GCCTGCTCGTGTTCTTCTCC+AGG | 0.467838 | 2.1:+13448116 | MS.gene35819:CDS |
CCATCCTTTCCTGTCCCTAA+CGG | 0.468008 | 2.1:-13452994 | None:intergenic |
CTCACCAGATTTGAAGCAAA+GGG | 0.468492 | 2.1:-13454372 | None:intergenic |
GTATTCTATCAGAATTCTCC+TGG | 0.469390 | 2.1:+13447987 | MS.gene35819:CDS |
TGATAACAAAGTGGGATTCA+AGG | 0.470540 | 2.1:+13450069 | MS.gene35819:CDS |
GGCTTATGCTCTTGCTGGCA+CGG | 0.470773 | 2.1:+13451630 | MS.gene35819:CDS |
GCTGACACCTTGGGATTGAC+TGG | 0.471027 | 2.1:+13454398 | MS.gene35819:CDS |
AGGAGACATATTGGCAATAG+TGG | 0.471422 | 2.1:-13449503 | None:intergenic |
ATGGATCCTCCTGGACCTCA+TGG | 0.472294 | 2.1:+13453329 | MS.gene35819:CDS |
CAGTTGTGACGGTGACATCT+TGG | 0.472921 | 2.1:-13454475 | None:intergenic |
AGAACACGAGCAGGCTTGAA+AGG | 0.473996 | 2.1:-13448108 | None:intergenic |
ATGGTCATGTCCTTGAAGTA+TGG | 0.475691 | 2.1:-13453308 | None:intergenic |
GACAGAGATACAAGGCTTCA+GGG | 0.477290 | 2.1:+13454082 | MS.gene35819:intron |
ACAACTATGATTGATGGGCT+TGG | 0.477538 | 2.1:+13448968 | MS.gene35819:CDS |
TTCGGCTGTACCACATGTAT+TGG | 0.477825 | 2.1:+13451307 | MS.gene35819:CDS |
TCAGTCCCAACCACACTGTC+AGG | 0.479411 | 2.1:-13448938 | None:intergenic |
GAAAAGGAGCCGTTAGGGAC+AGG | 0.481014 | 2.1:+13452985 | MS.gene35819:CDS |
CACAATACCTTATGCAGCGT+GGG | 0.484741 | 2.1:+13453447 | MS.gene35819:CDS |
GCACTCGGCCCTCAAAATTA+CGG | 0.485012 | 2.1:-13451561 | None:intergenic |
AATGACTTCACTTCTTAATG+AGG | 0.487043 | 2.1:-13454772 | None:intergenic |
GCATACTTCCCTATGTCATC+AGG | 0.488632 | 2.1:+13454747 | MS.gene35819:CDS |
GAGGAACAACGAGCATATTA+CGG | 0.489483 | 2.1:-13448735 | None:intergenic |
TGCATAAGGTATTGTGCAGC+AGG | 0.491012 | 2.1:-13453440 | None:intergenic |
GAAGCAGAGGCAGCAATGCT+TGG | 0.491053 | 2.1:+13449019 | MS.gene35819:CDS |
GCAGTGGAAGTTCCAGGATT+GGG | 0.492752 | 2.1:+13454139 | MS.gene35819:CDS |
GCGGGAGATCGAACGGGAGA+AGG | 0.492838 | 2.1:-13446479 | None:intergenic |
TGGCAAGAATGTTTACTTGA+GGG | 0.494069 | 2.1:+13453014 | MS.gene35819:CDS |
AAGGTCAGAGAATGCAGTGC+AGG | 0.494971 | 2.1:+13448642 | MS.gene35819:CDS |
CCTTTGCTTCAAATCTGGTG+AGG | 0.494973 | 2.1:+13454373 | MS.gene35819:CDS |
ACATAAAGCTTCTCCCCTGT+TGG | 0.495420 | 2.1:-13453605 | None:intergenic |
TCAGACTTCATTTCTTTCAA+AGG | 0.497520 | 2.1:-13450031 | None:intergenic |
GCCGTGACTCCATCGGTTAA+CGG | 0.498431 | 2.1:-13446540 | None:intergenic |
ATTGATGGGCTTGGAGTCGC+TGG | 0.499266 | 2.1:+13448977 | MS.gene35819:CDS |
TTCTAATAAGATCAATCCTC+TGG | 0.501652 | 2.1:+13448310 | MS.gene35819:CDS |
CCCATCAATCATAGTTGTAT+GGG | 0.501899 | 2.1:-13448963 | None:intergenic |
TGTCAGGCAACACGTTGGAT+TGG | 0.501963 | 2.1:-13453168 | None:intergenic |
GGCAGTGGAAGTTCCAGGAT+TGG | 0.503083 | 2.1:+13454138 | MS.gene35819:CDS |
CACTTCTTCCAGTTAGCTTG+AGG | 0.504054 | 2.1:-13449579 | None:intergenic |
GCATGCGTGATGCTATGAAT+AGG | 0.504170 | 2.1:+13448276 | MS.gene35819:CDS |
AGAGGCAGCAATGCTTGGCC+AGG | 0.505091 | 2.1:+13449024 | MS.gene35819:CDS |
TGGTGAGGATGCTGACACCT+TGG | 0.505357 | 2.1:+13454388 | MS.gene35819:CDS |
TCCTTCACACCATGAGGTCC+AGG | 0.505579 | 2.1:-13453338 | None:intergenic |
GGTTGACATTGACTTTGAAA+AGG | 0.506476 | 2.1:+13452969 | MS.gene35819:intron |
GCAATGATGAAGTTATGTCT+AGG | 0.507216 | 2.1:+13453510 | MS.gene35819:CDS |
TATGTACTTCTGAACATGTC+AGG | 0.508691 | 2.1:-13453184 | None:intergenic |
TGAATTATCGTTGGCTGACA+GGG | 0.508821 | 2.1:+13449480 | MS.gene35819:CDS |
AATTCACCACCACCAGGCTT+GGG | 0.510953 | 2.1:-13447732 | None:intergenic |
TGTGACGGTGACATCTTGGC+CGG | 0.511650 | 2.1:-13454471 | None:intergenic |
GCAGCGTGGGGTGGAAAAGA+AGG | 0.512014 | 2.1:+13453460 | MS.gene35819:CDS |
CACCTGTGCAATTTCTTCAG+TGG | 0.512662 | 2.1:-13453049 | None:intergenic |
TTAGGAAACATGGTGTTGTA+GGG | 0.512869 | 2.1:+13449343 | MS.gene35819:CDS |
TCCTTGTTAATATTTCCAGC+TGG | 0.513378 | 2.1:-13453413 | None:intergenic |
CGATGATACTGTTCGATGAA+AGG | 0.513427 | 2.1:-13446614 | None:intergenic |
AGGAGAATTCTGATAGAATA+CGG | 0.514211 | 2.1:-13447985 | None:intergenic |
CCCATACAACTATGATTGAT+GGG | 0.514361 | 2.1:+13448963 | MS.gene35819:CDS |
GTGAAAGCGGGAGATCGAAC+GGG | 0.517009 | 2.1:-13446485 | None:intergenic |
AAAATCAGCGAGATAAAGCC+CGG | 0.517821 | 2.1:+13454452 | MS.gene35819:CDS |
AATTACGAATGGCAGATTCC+AGG | 0.519101 | 2.1:-13448005 | None:intergenic |
CAATGATGAAGTTATGTCTA+GGG | 0.519169 | 2.1:+13453511 | MS.gene35819:CDS |
GTTCCAGGATTGGGCAGCCA+AGG | 0.520888 | 2.1:+13454148 | MS.gene35819:CDS |
GAAGAGAAGGTTCTAGAAAG+AGG | 0.522793 | 2.1:-13446443 | None:intergenic |
TCTTGTCTTGATAACAAAGT+GGG | 0.524984 | 2.1:+13450061 | MS.gene35819:CDS |
ACTGATCACATTTCTCCAGC+TGG | 0.526190 | 2.1:+13453398 | MS.gene35819:CDS |
ACTTGTAATTCGTTCCACAT+AGG | 0.526220 | 2.1:-13453229 | None:intergenic |
GGAACGGGCGGCGTTAGCGG+CGG | 0.527362 | 2.1:-13446516 | None:intergenic |
ATCGGAGATTATACCGGAAG+TGG | 0.530020 | 2.1:-13446645 | None:intergenic |
ACTTTGAAAAGGAGCCGTTA+GGG | 0.531710 | 2.1:+13452980 | MS.gene35819:CDS |
ATTGTTTGTCGACTATAATG+AGG | 0.532842 | 2.1:+13449726 | MS.gene35819:CDS |
TTGACAAGTCTTCCCAAGCC+TGG | 0.533973 | 2.1:+13447720 | MS.gene35819:CDS |
GAACACGAGCAGGCTTGAAA+GGG | 0.534295 | 2.1:-13448107 | None:intergenic |
TTACTAAGGGTAACCCTATG+TGG | 0.535614 | 2.1:+13453215 | MS.gene35819:CDS |
GCGGCGGATGAGGTGAAAGC+GGG | 0.536134 | 2.1:-13446497 | None:intergenic |
GAAGTCGAACCATGTATCTC+AGG | 0.536379 | 2.1:+13449890 | MS.gene35819:CDS |
GAATTGGAGTACTTCAACCA+TGG | 0.536629 | 2.1:+13454722 | MS.gene35819:CDS |
AATGAGGTTCCTGATGACAT+AGG | 0.539122 | 2.1:-13454756 | None:intergenic |
ATACCTCTGAAGTAGATACT+TGG | 0.540471 | 2.1:-13451105 | None:intergenic |
TCCTGAATATGGAGCAACCA+TGG | 0.542223 | 2.1:+13449522 | MS.gene35819:CDS |
TGTGCAATTTCTTCAGTGGA+TGG | 0.544671 | 2.1:-13453045 | None:intergenic |
CATAGGGAAGTATGCCTCCA+TGG | 0.545905 | 2.1:-13454739 | None:intergenic |
GTGACGGTGACATCTTGGCC+GGG | 0.548359 | 2.1:-13454470 | None:intergenic |
TCCTGGACCTCATGGTGTGA+AGG | 0.548498 | 2.1:+13453337 | MS.gene35819:CDS |
CCCGTTCCACCGTTAACCGA+TGG | 0.550117 | 2.1:+13446531 | MS.gene35819:CDS |
GTCACCGTCACAACTGATAC+CGG | 0.550262 | 2.1:+13454482 | MS.gene35819:CDS |
TGTTGAAAAGATTATTGACT+GGG | 0.551841 | 2.1:+13448056 | MS.gene35819:CDS |
AAGATAGTTAGCGCGTGTCA+AGG | 0.552401 | 2.1:-13451587 | None:intergenic |
GTGCTGGCTGGAGCTGAATA+CGG | 0.552786 | 2.1:+13454117 | MS.gene35819:CDS |
AGTCTTCCCAAGCCTGGTGG+TGG | 0.553048 | 2.1:+13447726 | MS.gene35819:CDS |
TCATGGCAGACCTCATGATC+GGG | 0.553602 | 2.1:+13450006 | MS.gene35819:intron |
ATGAGGTTCCTGATGACATA+GGG | 0.554400 | 2.1:-13454755 | None:intergenic |
CTCATGGCAGACCTCATGAT+CGG | 0.554707 | 2.1:+13450005 | MS.gene35819:intron |
AGAGCATAAGCCACAACCAA+TGG | 0.554884 | 2.1:-13451619 | None:intergenic |
GGTGAAAGCGGGAGATCGAA+CGG | 0.559834 | 2.1:-13446486 | None:intergenic |
ACGAGAGAGAGGTGAAGAGA+AGG | 0.559856 | 2.1:-13446456 | None:intergenic |
ATGTTGAAAAGATTATTGAC+TGG | 0.559971 | 2.1:+13448055 | MS.gene35819:CDS |
AACTTGAACCCAACAACACC+GGG | 0.563808 | 2.1:-13449258 | None:intergenic |
ACCTGGAGAAGAACACGAGC+AGG | 0.566281 | 2.1:-13448117 | None:intergenic |
ATGAGGTCCAGGAGGATCCA+TGG | 0.567055 | 2.1:-13453327 | None:intergenic |
GAAATTGTCACAATTACGAA+TGG | 0.569548 | 2.1:-13448016 | None:intergenic |
GACATGACCATGGATCCTCC+TGG | 0.570495 | 2.1:+13453320 | MS.gene35819:CDS |
CAGTTCAAGTTGATGTAGCA+AGG | 0.570690 | 2.1:+13448623 | MS.gene35819:CDS |
CCTATGAGCATGGTGTTACC+CGG | 0.571735 | 2.1:+13449240 | MS.gene35819:CDS |
AATGTAGGTGGCAATGATAG+AGG | 0.571862 | 2.1:+13449684 | MS.gene35819:intron |
TCTCATCTGACAGAGATACA+AGG | 0.572796 | 2.1:+13454074 | MS.gene35819:intron |
CGTGATGCTATGAATAGGCT+TGG | 0.573806 | 2.1:+13448281 | MS.gene35819:CDS |
TTTCCAAATTCACCACCACC+AGG | 0.574063 | 2.1:-13447738 | None:intergenic |
TGGTGTTACAGCAACTGACT+TGG | 0.574164 | 2.1:+13449299 | MS.gene35819:CDS |
CCTGAATATGGAGCAACCAT+GGG | 0.574382 | 2.1:+13449523 | MS.gene35819:CDS |
AAAGGACGCCGTGACTCCAT+CGG | 0.575808 | 2.1:-13446547 | None:intergenic |
GGAGCGACAGCTCTGATCTG+AGG | 0.576907 | 2.1:-13446593 | None:intergenic |
ATACCTTATGCAGCGTGGGG+TGG | 0.578429 | 2.1:+13453451 | MS.gene35819:CDS |
GCTGGAGCTGAATACGGCAG+TGG | 0.580134 | 2.1:+13454123 | MS.gene35819:CDS |
TTGGAATGTGCACAGTCTTG+GGG | 0.580481 | 2.1:-13453586 | None:intergenic |
CCTCACCAGATTTGAAGCAA+AGG | 0.584378 | 2.1:-13454373 | None:intergenic |
ATGGCAAGAATGTTTACTTG+AGG | 0.585412 | 2.1:+13453013 | MS.gene35819:CDS |
AACTCTTATGGAAGCCGTCG+TGG | 0.585544 | 2.1:+13453488 | MS.gene35819:CDS |
ATTCATCGCAGTAATTTGGT+AGG | 0.585715 | 2.1:+13454335 | MS.gene35819:CDS |
ATCCACTGAAGAAATTGCAC+AGG | 0.586485 | 2.1:+13453047 | MS.gene35819:CDS |
AGATAGTTAGCGCGTGTCAA+GGG | 0.586653 | 2.1:-13451586 | None:intergenic |
ACCGTTAACCGATGGAGTCA+CGG | 0.589291 | 2.1:+13446539 | MS.gene35819:CDS |
ACGGGAGAAGGACGAGAGAG+AGG | 0.589513 | 2.1:-13446467 | None:intergenic |
TTCTTGTCTTGATAACAAAG+TGG | 0.591441 | 2.1:+13450060 | MS.gene35819:CDS |
GCATAAGCCACAACCAATGG+AGG | 0.592659 | 2.1:-13451616 | None:intergenic |
TTCAAAGGTACCCGATCATG+AGG | 0.595563 | 2.1:-13450016 | None:intergenic |
TTACCAAGTATCTACTTCAG+AGG | 0.599229 | 2.1:+13451102 | MS.gene35819:CDS |
CAACTTGAACCCAACAACAC+CGG | 0.601241 | 2.1:-13449259 | None:intergenic |
TTCCAGGATTGGGCAGCCAA+GGG | 0.602942 | 2.1:+13454149 | MS.gene35819:CDS |
TCCATCGGTTAACGGTGGAA+CGG | 0.603600 | 2.1:-13446532 | None:intergenic |
CCGTTAGGGACAGGAAAGGA+TGG | 0.603630 | 2.1:+13452994 | MS.gene35819:CDS |
TGGTTCTGGTATAGTACACC+AGG | 0.603672 | 2.1:+13448759 | MS.gene35819:CDS |
CGACAGCTCTGATCTGAGGA+CGG | 0.603821 | 2.1:-13446589 | None:intergenic |
GCTGGTGAAAATCCTTTCAA+GGG | 0.608551 | 2.1:+13447693 | MS.gene35819:intron |
CCCTGAATTGCCAATACATG+TGG | 0.612505 | 2.1:-13451317 | None:intergenic |
TTGGTAACAACTCCAGAACC+AGG | 0.614921 | 2.1:-13451086 | None:intergenic |
ACAAGTCTTCCCAAGCCTGG+TGG | 0.616274 | 2.1:+13447723 | MS.gene35819:CDS |
ACATATGAAGCTATTACTAA+GGG | 0.617409 | 2.1:+13453202 | MS.gene35819:CDS |
TCGGTTAACGGTGGAACGGG+CGG | 0.617594 | 2.1:-13446528 | None:intergenic |
CGCGTGTCAAGGGATGCACT+CGG | 0.620384 | 2.1:-13451576 | None:intergenic |
ACACAAATTCTTAGGAAACA+TGG | 0.621487 | 2.1:+13449333 | MS.gene35819:CDS |
GCACAATACCTTATGCAGCG+TGG | 0.623152 | 2.1:+13453446 | MS.gene35819:CDS |
GCTTGAGTTCCAGAGAAACA+AGG | 0.624830 | 2.1:+13448675 | MS.gene35819:CDS |
AGCCACAACCAATGGAGGGG+AGG | 0.625371 | 2.1:-13451611 | None:intergenic |
CATAAGCCACAACCAATGGA+GGG | 0.625671 | 2.1:-13451615 | None:intergenic |
AGTTCCAGAGAAACAAGGAG+AGG | 0.626993 | 2.1:+13448680 | MS.gene35819:CDS |
GTCATGTCCTTGAAGTATGG+AGG | 0.629601 | 2.1:-13453305 | None:intergenic |
GGCGGCGGATGAGGTGAAAG+CGG | 0.639012 | 2.1:-13446498 | None:intergenic |
GAGAGACAGGAGATCTCCAA+AGG | 0.639602 | 2.1:-13446565 | None:intergenic |
AATGATAGAGGCCTATCTCA+GGG | 0.640303 | 2.1:+13449696 | MS.gene35819:CDS |
TTCATGACCAGTCAATCCCA+AGG | 0.643471 | 2.1:-13454405 | None:intergenic |
GAATAAGCTCTGTCTTGTTG+AGG | 0.645207 | 2.1:-13449842 | None:intergenic |
ATTGTAAACAAGCTATTGAA+CGG | 0.646245 | 2.1:+13453554 | MS.gene35819:CDS |
ATAAGCCACAACCAATGGAG+GGG | 0.646717 | 2.1:-13451614 | None:intergenic |
CATGTATCTCAGGACCAAAG+AGG | 0.648338 | 2.1:+13449900 | MS.gene35819:CDS |
ATTCTCGGATCATTGAGAGA+AGG | 0.650901 | 2.1:-13447774 | None:intergenic |
TCGGATCATTGAGAGAAGGA+AGG | 0.651512 | 2.1:-13447770 | None:intergenic |
TCCAGCTGGAAATATTAACA+AGG | 0.652532 | 2.1:+13453412 | MS.gene35819:CDS |
AGCTCCAGCCAGCACAATGG+TGG | 0.653466 | 2.1:-13454109 | None:intergenic |
AAGCCAAATCAACAACAGCT+GGG | 0.656345 | 2.1:-13448253 | None:intergenic |
TGGTATGGGTGAATTATCGT+TGG | 0.657380 | 2.1:+13449471 | MS.gene35819:CDS |
AATGATGAAGTTATGTCTAG+GGG | 0.661576 | 2.1:+13453512 | MS.gene35819:CDS |
ATACTTCAAGGACATGACCA+TGG | 0.661807 | 2.1:+13453310 | MS.gene35819:CDS |
TGGTGTACTATACCAGAACC+AGG | 0.663464 | 2.1:-13448757 | None:intergenic |
CACAGCTCGCTTTGACACAG+AGG | 0.664298 | 2.1:+13454520 | MS.gene35819:CDS |
CACATGTATTGGCAATTCAG+GGG | 0.665307 | 2.1:+13451318 | MS.gene35819:CDS |
GAGCATATTACGGAAAGCAG+TGG | 0.665568 | 2.1:-13448725 | None:intergenic |
GAACATGTCAGGCAACACGT+TGG | 0.666023 | 2.1:-13453173 | None:intergenic |
TAACTTCATCATTGCCACGA+CGG | 0.672661 | 2.1:-13453502 | None:intergenic |
TTCAGCTCCAGCCAGCACAA+TGG | 0.672803 | 2.1:-13454112 | None:intergenic |
TGTTGCTCTGAGAGAAGCCA+TGG | 0.672975 | 2.1:-13446405 | None:intergenic |
ATCTACAGGGAAGAAACCCA+TGG | 0.674382 | 2.1:-13449539 | None:intergenic |
GTTACTCTATCCTGACAGTG+TGG | 0.677429 | 2.1:+13448928 | MS.gene35819:CDS |
AGACTGTGCACATTCCAACA+GGG | 0.682191 | 2.1:+13453591 | MS.gene35819:CDS |
GACTGTGCACATTCCAACAG+GGG | 0.683171 | 2.1:+13453592 | MS.gene35819:CDS |
TAGGCATCCTTCACACCATG+AGG | 0.684287 | 2.1:-13453344 | None:intergenic |
GGAGCCGTTAGGGACAGGAA+AGG | 0.690362 | 2.1:+13452990 | MS.gene35819:CDS |
TTGTCTGGAAAATTGCGCAA+TGG | 0.696960 | 2.1:+13449279 | MS.gene35819:CDS |
TTCACACCATGAGGTCCAGG+AGG | 0.697455 | 2.1:-13453335 | None:intergenic |
ACAATACCTTATGCAGCGTG+GGG | 0.701770 | 2.1:+13453448 | MS.gene35819:CDS |
TCACCAGATTTGAAGCAAAG+GGG | 0.711190 | 2.1:-13454371 | None:intergenic |
ATAATGACAGCCTATGAGCA+TGG | 0.713309 | 2.1:+13449230 | MS.gene35819:intron |
GTGACTCCATCGGTTAACGG+TGG | 0.718292 | 2.1:-13446537 | None:intergenic |
TTGGAGTACTTCAACCATGG+AGG | 0.720887 | 2.1:+13454725 | MS.gene35819:CDS |
GTAATGTTACATGATCTACA+GGG | 0.772666 | 2.1:-13449552 | None:intergenic |
TGTACTATACCAGAACCAGG+AGG | 0.788384 | 2.1:-13448754 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 13446407 | 13454787 | 13446407 | ID=MS.gene35819 |
chr2.1 | mRNA | 13446407 | 13454787 | 13446407 | ID=MS.gene35819.t1;Parent=MS.gene35819 |
chr2.1 | exon | 13446407 | 13446653 | 13446407 | ID=MS.gene35819.t1.exon1;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13446407 | 13446653 | 13446407 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13447694 | 13447798 | 13447694 | ID=MS.gene35819.t1.exon2;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13447694 | 13447798 | 13447694 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13447977 | 13448137 | 13447977 | ID=MS.gene35819.t1.exon3;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13447977 | 13448137 | 13447977 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13448239 | 13448331 | 13448239 | ID=MS.gene35819.t1.exon4;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13448239 | 13448331 | 13448239 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13448595 | 13448780 | 13448595 | ID=MS.gene35819.t1.exon5;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13448595 | 13448780 | 13448595 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13448884 | 13449045 | 13448884 | ID=MS.gene35819.t1.exon6;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13448884 | 13449045 | 13448884 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13449240 | 13449384 | 13449240 | ID=MS.gene35819.t1.exon7;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13449240 | 13449384 | 13449240 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13449467 | 13449609 | 13449467 | ID=MS.gene35819.t1.exon8;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13449467 | 13449609 | 13449467 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13449691 | 13449747 | 13449691 | ID=MS.gene35819.t1.exon9;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13449691 | 13449747 | 13449691 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13449842 | 13449921 | 13449842 | ID=MS.gene35819.t1.exon10;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13449842 | 13449921 | 13449842 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13450015 | 13450090 | 13450015 | ID=MS.gene35819.t1.exon11;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13450015 | 13450090 | 13450015 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13451056 | 13451123 | 13451056 | ID=MS.gene35819.t1.exon12;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13451056 | 13451123 | 13451056 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13451261 | 13451379 | 13451261 | ID=MS.gene35819.t1.exon13;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13451261 | 13451379 | 13451261 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13451530 | 13451651 | 13451530 | ID=MS.gene35819.t1.exon14;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13451530 | 13451651 | 13451530 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13452970 | 13453068 | 13452970 | ID=MS.gene35819.t1.exon15;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13452970 | 13453068 | 13452970 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13453163 | 13453249 | 13453163 | ID=MS.gene35819.t1.exon16;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13453163 | 13453249 | 13453163 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13453305 | 13453643 | 13453305 | ID=MS.gene35819.t1.exon17;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13453305 | 13453643 | 13453305 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13454087 | 13454170 | 13454087 | ID=MS.gene35819.t1.exon18;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13454087 | 13454170 | 13454087 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13454299 | 13454541 | 13454299 | ID=MS.gene35819.t1.exon19;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13454299 | 13454541 | 13454299 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
chr2.1 | exon | 13454719 | 13454787 | 13454719 | ID=MS.gene35819.t1.exon20;Parent=MS.gene35819.t1 |
chr2.1 | CDS | 13454719 | 13454787 | 13454719 | ID=cds.MS.gene35819.t1;Parent=MS.gene35819.t1 |
Gene Sequence |
Protein sequence |