AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35998

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35998.t1 MTR_6g045200 94.380 605 23 2 1 595 1 604 0.0 1157
MS.gene35998.t1 MTR_6g034030 86.851 616 56 6 1 594 1 613 0.0 1068
MS.gene35998.t1 MTR_0549s0020 95.038 524 16 1 64 577 1 524 0.0 1020
MS.gene35998.t1 MTR_6g034030 85.386 479 45 6 1 457 1 476 0.0 811
MS.gene35998.t1 MTR_4g101880 51.340 485 206 9 125 592 85 556 5.46e-160 469
MS.gene35998.t1 MTR_0549s0010 86.058 208 18 2 64 261 1 207 3.49e-119 352
MS.gene35998.t1 MTR_4g049640 43.408 311 165 4 223 523 53 362 1.39e-66 221
MS.gene35998.t1 MTR_3g112530 41.411 326 178 6 223 538 51 373 9.37e-63 212
MS.gene35998.t1 MTR_4g132400 35.077 325 201 5 208 522 32 356 9.18e-56 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35998.t1 AT5G24030 53.302 636 196 15 17 579 14 621 0.0 618
MS.gene35998.t1 AT4G27970 59.877 486 163 8 108 582 41 505 0.0 567
MS.gene35998.t1 AT4G27970 59.877 486 163 8 108 582 41 505 0.0 567
MS.gene35998.t1 AT5G24030 52.783 521 149 13 17 467 14 507 7.41e-169 490
MS.gene35998.t1 AT4G27970 64.305 367 127 3 225 590 1 364 1.39e-164 474
MS.gene35998.t1 AT4G27970 64.305 367 127 3 225 590 1 364 1.39e-164 474
MS.gene35998.t1 AT4G27970 63.435 361 104 5 108 458 41 383 1.87e-155 451
MS.gene35998.t1 AT4G27970 63.435 361 104 5 108 458 41 383 1.87e-155 451
MS.gene35998.t1 AT1G12480 55.294 425 169 5 146 549 102 526 1.26e-154 456
MS.gene35998.t1 AT1G62280 39.542 306 176 6 223 520 46 350 1.06e-68 228
MS.gene35998.t1 AT1G62262 37.255 306 175 5 223 520 46 342 2.51e-61 207

Find 116 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTAGTGATGGAGTTTC+TGG 0.102710 6.2:-24167123 None:intergenic
CCATAAGATTAGGTTTATTT+TGG 0.111313 6.2:-24168366 None:intergenic
AGGAGTCTTACTTTGGAAAT+TGG 0.151569 6.2:-24167204 None:intergenic
GCAACCGAATATTCTTATTT+TGG 0.160615 6.2:-24169752 None:intergenic
AATGACTTAGTGACAATATT+TGG 0.219874 6.2:-24169452 None:intergenic
ATTGGTTGAGACTTGAATTT+TGG 0.251980 6.2:-24167909 None:intergenic
ACCAAGAATGTTTCCTTTAG+TGG 0.275047 6.2:+24167822 MS.gene35998:CDS
TCCACTAAAGGAAACATTCT+TGG 0.287959 6.2:-24167823 None:intergenic
TGTCTCGAGCTTAAGATTTA+CGG 0.289775 6.2:+24168608 MS.gene35998:CDS
ATGGCAATAGCAATGTCATT+AGG 0.310404 6.2:-24169566 None:intergenic
TGTTGGTAAGTAACTCCTTT+TGG 0.316133 6.2:-24167933 None:intergenic
AGCTCCTAGTGTTGCTTCAA+TGG 0.322868 6.2:+24168877 MS.gene35998:CDS
TTAGCAGCCAAGCAATTCTT+TGG 0.324898 6.2:+24168297 MS.gene35998:CDS
CCAAAATAAACCTAATCTTA+TGG 0.332000 6.2:+24168366 MS.gene35998:CDS
TTTCAATCTCTTTGGAGTCT+TGG 0.340201 6.2:-24169643 None:intergenic
GGGAGTTATGTGAAGGAATT+CGG 0.343526 6.2:-24168345 None:intergenic
GGAGTCTTACTTTGGAAATT+GGG 0.353731 6.2:-24167203 None:intergenic
CTAGTGTTGCTTCAATGGCT+TGG 0.355081 6.2:+24168882 MS.gene35998:CDS
ATCTCTATGGTACATTCTTA+TGG 0.359149 6.2:+24168574 MS.gene35998:CDS
TCAAATCATTTATCAGTTGT+TGG 0.360276 6.2:+24168680 MS.gene35998:CDS
CCAACAGCAAAGAAGAAAAT+TGG 0.369223 6.2:-24168752 None:intergenic
AACACTGGATGTAGCTCTTT+AGG 0.372096 6.2:-24168839 None:intergenic
TAGTGTTGCTTCAATGGCTT+GGG 0.373598 6.2:+24168883 MS.gene35998:CDS
GAGAATATAGACAGCGAAAA+TGG 0.378577 6.2:-24168414 None:intergenic
CTTACTTTGGAAATTGGGCT+TGG 0.379734 6.2:-24167198 None:intergenic
CTCTTTAGGTAGTGTTGCAT+TGG 0.379987 6.2:-24168825 None:intergenic
AAAACCTACATCAATCTCTA+TGG 0.381498 6.2:+24168561 MS.gene35998:CDS
CGGAGATGTACCATAAGATT+AGG 0.387385 6.2:-24168376 None:intergenic
ATAGGGCATTACCTGTTGAT+AGG 0.387872 6.2:+24168144 MS.gene35998:CDS
ATTGTTCCTTTATTTCTCAT+TGG 0.389787 6.2:+24168958 MS.gene35998:CDS
CGGTTCCCCGTTTCATCGTT+CGG 0.391099 6.2:+24168260 MS.gene35998:CDS
TCAGTTGTTGGAAACTTTGT+TGG 0.392188 6.2:+24168692 MS.gene35998:CDS
AACTTACCAATGAGAAATAA+AGG 0.395497 6.2:-24168964 None:intergenic
AACAATGGCCGTTTCTTCTC+CGG 0.397146 6.2:+24168240 MS.gene35998:CDS
AATCTCAACATTCACGGTTA+TGG 0.397308 6.2:+24169493 MS.gene35998:CDS
CTTTCTCCTTCTATCACTAA+TGG 0.397340 6.2:-24169585 None:intergenic
CACTGGTTAGGGTTCAGATA+TGG 0.404152 6.2:+24169617 MS.gene35998:CDS
ACGCTACAAGAAGCTTTGAT+AGG 0.404558 6.2:+24168126 MS.gene35998:CDS
AAGCCACATAAACACTGGTT+AGG 0.404899 6.2:+24169605 MS.gene35998:CDS
CTATTGCCATTAGTGATAGA+AGG 0.408483 6.2:+24169579 MS.gene35998:CDS
TGGCAATAGCAATGTCATTA+GGG 0.415303 6.2:-24169565 None:intergenic
CGGTGGTAGGCGATGTGGCT+AGG 0.417492 6.2:-24168325 None:intergenic
GACTCGTTCAAAACATGGTC+TGG 0.417748 6.2:+24168032 MS.gene35998:CDS
ATATGCTTCTACAGGCTGTC+AGG 0.429218 6.2:+24169223 MS.gene35998:intron
CATATACCGAACGATGAAAC+GGG 0.430087 6.2:-24168266 None:intergenic
ATGGCTTGGGCTAAGATTCA+AGG 0.432952 6.2:+24168896 MS.gene35998:CDS
GCAATTGCTGCACCAGTCAT+TGG 0.435263 6.2:-24169404 None:intergenic
GAACACTGATGATAGTAGTT+TGG 0.436563 6.2:+24169682 MS.gene35998:CDS
TTAAGCTCGAGACATAATAT+TGG 0.444167 6.2:-24168599 None:intergenic
GCATCAAAATACCTATCAAC+AGG 0.446386 6.2:-24168155 None:intergenic
GCATATACCGAACGATGAAA+CGG 0.446798 6.2:-24168267 None:intergenic
TTAGGTAGTGTTGCATTGGT+TGG 0.448645 6.2:-24168821 None:intergenic
ACAACTGATAAATGATTTGA+AGG 0.451534 6.2:-24168677 None:intergenic
AACCCTAACCAGTGTTTATG+TGG 0.454199 6.2:-24169608 None:intergenic
GGCTCTAATCTCAACATTCA+CGG 0.461413 6.2:+24169487 MS.gene35998:CDS
AACTTTGTTGGAGCGTTACT+TGG 0.463926 6.2:+24168704 MS.gene35998:CDS
CGAACGATGAAACGGGGAAC+CGG 0.472041 6.2:-24168259 None:intergenic
CTACTTCGAAGCAGTTCGTC+GGG 0.477986 6.2:+24168448 MS.gene35998:CDS
CGAAAGCCGCCTTTGTCCAC+CGG 0.482961 6.2:-24168642 None:intergenic
AGCGTTACTTGGTGCATCGA+TGG 0.486089 6.2:+24168715 MS.gene35998:CDS
GATATATACTTTATTAGTGA+TGG 0.486944 6.2:-24167132 None:intergenic
GCATCGTTTGAGGACGGTTG+TGG 0.487768 6.2:-24169716 None:intergenic
ACCAGTCATTGGAAAAGTAT+AGG 0.490366 6.2:-24169393 None:intergenic
GAGTTTGAGAACCATCTTGT+TGG 0.490450 6.2:-24167950 None:intergenic
AAGAAGAAGTTAACACGGAT+TGG 0.491885 6.2:-24168482 None:intergenic
TAAGTCATTGTGTGTTGCAT+TGG 0.500305 6.2:+24169466 MS.gene35998:CDS
CCATCTTGTGCATTTCCACT+CGG 0.503604 6.2:-24168098 None:intergenic
AGCTTAAGATTTACGGACAA+TGG 0.504721 6.2:+24168615 MS.gene35998:CDS
GGTGGTAGGCGATGTGGCTA+GGG 0.515104 6.2:-24168324 None:intergenic
ACGGGGAACCGGAGAAGAAA+CGG 0.516364 6.2:-24168248 None:intergenic
GAACTGCTTCGAAGTAGAAA+AGG 0.521206 6.2:-24168442 None:intergenic
CAAGCCATTGAAGCAACACT+AGG 0.534868 6.2:-24168881 None:intergenic
ATTTACGGACAATGGATGTC+CGG 0.537992 6.2:+24168623 MS.gene35998:CDS
TGTACCATAGAGATTGATGT+AGG 0.539740 6.2:-24168565 None:intergenic
CGCTACAAGAAGCTTTGATA+GGG 0.540378 6.2:+24168127 MS.gene35998:CDS
TGAGTTTCTTTATAACAAAG+TGG 0.544697 6.2:-24167774 None:intergenic
GCGTTACTTGGTGCATCGAT+GGG 0.546328 6.2:+24168716 MS.gene35998:CDS
AAGTCTCAACCAATGCCAAA+AGG 0.547948 6.2:+24167918 MS.gene35998:CDS
GTCAGGATCAATTTCTTCAG+AGG 0.548320 6.2:+24169240 MS.gene35998:CDS
GCATCGATGGGACTAATTGA+AGG 0.552203 6.2:+24168728 MS.gene35998:CDS
GGAGTTACTTACCAACAAGA+TGG 0.552350 6.2:+24167939 MS.gene35998:CDS
TGGACAAAGGCGGCTTTCGA+AGG 0.557619 6.2:+24168646 MS.gene35998:CDS
TCATCGTTCGGTATATGCCT+CGG 0.559454 6.2:+24168272 MS.gene35998:CDS
AGAAGTTAACACGGATTGGA+TGG 0.561531 6.2:-24168478 None:intergenic
AGCCACATAAACACTGGTTA+GGG 0.563075 6.2:+24169606 MS.gene35998:CDS
TTCAAAACATGGTCTGGTGG+AGG 0.567930 6.2:+24168038 MS.gene35998:CDS
TCTACTTCGAAGCAGTTCGT+CGG 0.581441 6.2:+24168447 MS.gene35998:CDS
ACAAAGGCGGCTTTCGAAGG+TGG 0.582957 6.2:+24168649 MS.gene35998:CDS
ATGTGAAGGAATTCGGTGGT+AGG 0.587839 6.2:-24168338 None:intergenic
AATCGTAATTATAATCAACC+TGG 0.590471 6.2:+24167981 MS.gene35998:CDS
GATTTGACTCGTTCAAAACA+TGG 0.592105 6.2:+24168027 MS.gene35998:CDS
ATTAGTGATGGAGTTTCTGG+AGG 0.593685 6.2:-24167120 None:intergenic
TGCTACCTCATGACAAACAA+TGG 0.595420 6.2:+24168225 MS.gene35998:CDS
AATGGATGTCCGGTGGACAA+AGG 0.597830 6.2:+24168633 MS.gene35998:CDS
TGATCGGCATCGTTTGAGGA+CGG 0.600030 6.2:-24169722 None:intergenic
GGCATGCTGACAGACATTGA+AGG 0.604528 6.2:-24167753 None:intergenic
AACGGCCATTGTTTGTCATG+AGG 0.606151 6.2:-24168230 None:intergenic
CAACTGATAAATGATTTGAA+GGG 0.610598 6.2:-24168676 None:intergenic
TTAACTTCTTCTTCGCACCG+TGG 0.611868 6.2:+24168492 MS.gene35998:CDS
AGATGGTTCTCAAACTCGAA+AGG 0.612078 6.2:+24167956 MS.gene35998:CDS
TCAGACATTGCAATTCCTGA+TGG 0.614715 6.2:-24167873 None:intergenic
TCGTTCAAAACATGGTCTGG+TGG 0.618207 6.2:+24168035 MS.gene35998:CDS
CCGAGTGGAAATGCACAAGA+TGG 0.618656 6.2:+24168098 MS.gene35998:CDS
GAATTCGGTGGTAGGCGATG+TGG 0.633433 6.2:-24168330 None:intergenic
GGAGAAAGCCACATAAACAC+TGG 0.639503 6.2:+24169600 MS.gene35998:CDS
TACGGACAATGGATGTCCGG+TGG 0.646861 6.2:+24168626 MS.gene35998:CDS
GGATGTCCGGTGGACAAAGG+CGG 0.650208 6.2:+24168636 MS.gene35998:CDS
GCAACAAAGAGAAAGAACAC+TGG 0.662189 6.2:-24168854 None:intergenic
AGTTATGTGAAGGAATTCGG+TGG 0.705029 6.2:-24168342 None:intergenic
TTGCTTGGCTGCTAACTCCG+AGG 0.712685 6.2:-24168289 None:intergenic
GTGCGAAGAAGAAGTTAACA+CGG 0.725245 6.2:-24168487 None:intergenic
ATATACCGAACGATGAAACG+GGG 0.734350 6.2:-24168265 None:intergenic
AATCTTATGGTACATCTCCG+CGG 0.740138 6.2:+24168379 MS.gene35998:CDS
AATGGTAGCTATAAGTACCG+CGG 0.745035 6.2:-24168396 None:intergenic
CTACGTGGAAAAGAACCGAG+TGG 0.750541 6.2:+24168083 MS.gene35998:CDS
AGACAATTATCGATTCTACG+TGG 0.759063 6.2:+24168068 MS.gene35998:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAATATAACTAGAT+AGG - chr6.2:24169292-24169311 None:intergenic 10.0%
!! TTAAATAATATAACTAGATA+GGG - chr6.2:24169291-24169310 None:intergenic 10.0%
!!! GATATTAAATTTATTTTTTG+AGG + chr6.2:24169065-24169084 MS.gene35998:intron 10.0%
!!! TATTAAATTTATTTTTTGAG+GGG + chr6.2:24169067-24169086 MS.gene35998:intron 10.0%
!! TAAATAATATAACTAGATAG+GGG - chr6.2:24169290-24169309 None:intergenic 15.0%
!! TAACAAAAGATAAAATAAGT+TGG - chr6.2:24167584-24167603 None:intergenic 15.0%
!!! AACAATTATGCATATTTTTT+TGG - chr6.2:24169176-24169195 None:intergenic 15.0%
!!! ATTAAATTTATTTTTTGAGG+GGG + chr6.2:24169068-24169087 MS.gene35998:intron 15.0%
!!! TATCTTTTGTTATAGAAATA+TGG + chr6.2:24167414-24167433 MS.gene35998:intron 15.0%
!! AAAATAAATTTAATATCGCG+TGG - chr6.2:24169062-24169081 None:intergenic 20.0%
!! GATATATACTTTATTAGTGA+TGG - chr6.2:24167135-24167154 None:intergenic 20.0%
!! GCAATAAAAATGACTTAAAA+AGG - chr6.2:24167227-24167246 None:intergenic 20.0%
!!! AATTATGCATATTTTTTTGG+TGG - chr6.2:24169173-24169192 None:intergenic 20.0%
!!! ATTATGCATATTTTTTTGGT+GGG - chr6.2:24169172-24169191 None:intergenic 20.0%
!!! CATAAGATTAGGTTTATTTT+GGG - chr6.2:24168368-24168387 None:intergenic 20.0%
!!! TTATTTTGGCAAATTTTGAT+CGG - chr6.2:24169741-24169760 None:intergenic 20.0%
!!! TTTTTCCATGTTTTTTCAAT+AGG + chr6.2:24167698-24167717 MS.gene35998:intron 20.0%
! AACTTACCAATGAGAAATAA+AGG - chr6.2:24168967-24168986 None:intergenic 25.0%
! AATCGTAATTATAATCAACC+TGG + chr6.2:24167981-24168000 MS.gene35998:CDS 25.0%
! AATGACTTAGTGACAATATT+TGG - chr6.2:24169455-24169474 None:intergenic 25.0%
! ACAACTGATAAATGATTTGA+AGG - chr6.2:24168680-24168699 None:intergenic 25.0%
! ACTTTCCTATTGAAAAAACA+TGG - chr6.2:24167706-24167725 None:intergenic 25.0%
! CAACTGATAAATGATTTGAA+GGG - chr6.2:24168679-24168698 None:intergenic 25.0%
! CCAAAATAAACCTAATCTTA+TGG + chr6.2:24168366-24168385 MS.gene35998:CDS 25.0%
! GAAATATGGTATGTTTCAAT+TGG + chr6.2:24167428-24167447 MS.gene35998:intron 25.0%
! TATATGTAAGCGCTTAATTA+AGG + chr6.2:24167629-24167648 MS.gene35998:intron 25.0%
! TATCATTGAAATTTACTCAC+TGG + chr6.2:24169196-24169215 MS.gene35998:intron 25.0%
! TCAAATCATTTATCAGTTGT+TGG + chr6.2:24168680-24168699 MS.gene35998:CDS 25.0%
! TGAGTTTCTTTATAACAAAG+TGG - chr6.2:24167777-24167796 None:intergenic 25.0%
!! AATAACATTTTCTCCACTAA+AGG - chr6.2:24167838-24167857 None:intergenic 25.0%
!! ATTGTTCCTTTATTTCTCAT+TGG + chr6.2:24168958-24168977 MS.gene35998:CDS 25.0%
!! CAAGTAATTTTCAATCTCTT+TGG - chr6.2:24169654-24169673 None:intergenic 25.0%
!! CCATAAGATTAGGTTTATTT+TGG - chr6.2:24168369-24168388 None:intergenic 25.0%
!! TCTCTAAACATTTTTATTCC+AGG - chr6.2:24168002-24168021 None:intergenic 25.0%
!!! ATTCAAGGTTCTTTTGATTA+TGG + chr6.2:24168911-24168930 MS.gene35998:CDS 25.0%
!!! GAGGAATTCTAAAATGATAT+AGG - chr6.2:24167270-24167289 None:intergenic 25.0%
!!! TAGATTTTAGTTATGTCACA+AGG - chr6.2:24167672-24167691 None:intergenic 25.0%
!!! TTATGCATATTTTTTTGGTG+GGG - chr6.2:24169171-24169190 None:intergenic 25.0%
!!! TTTCATAAGCTATTTTGAAG+AGG - chr6.2:24167561-24167580 None:intergenic 25.0%
AAAACCTACATCAATCTCTA+TGG + chr6.2:24168561-24168580 MS.gene35998:CDS 30.0%
ATCTCTATGGTACATTCTTA+TGG + chr6.2:24168574-24168593 MS.gene35998:CDS 30.0%
CTTAAAAAGGAGTCTTACTT+TGG - chr6.2:24167214-24167233 None:intergenic 30.0%
GACTTAAGAGTTTCTAATTC+TGG - chr6.2:24168191-24168210 None:intergenic 30.0%
GAGACTGTTTGTATTACTTA+CGG + chr6.2:24167307-24167326 MS.gene35998:intron 30.0%
TCCAAATCATGAACATAAAG+AGG - chr6.2:24167289-24167308 None:intergenic 30.0%
TCCTCTTTATGTTCATGATT+TGG + chr6.2:24167285-24167304 MS.gene35998:intron 30.0%
TTAAGCTCGAGACATAATAT+TGG - chr6.2:24168602-24168621 None:intergenic 30.0%
! ATCAAAGATGATTTTCCATC+AGG + chr6.2:24167858-24167877 MS.gene35998:CDS 30.0%
! ATTGGTTGAGACTTGAATTT+TGG - chr6.2:24167912-24167931 None:intergenic 30.0%
! TAGAGATTGATGTAGGTTTT+TGG - chr6.2:24168561-24168580 None:intergenic 30.0%
! TTTACAGATTTTCTCTTGCA+TGG + chr6.2:24169366-24169385 MS.gene35998:intron 30.0%
! TTTATTAGTGATGGAGTTTC+TGG - chr6.2:24167126-24167145 None:intergenic 30.0%
!! GTTCTTTTGATTATGGATCA+AGG + chr6.2:24168918-24168937 MS.gene35998:CDS 30.0%
!!! TGATAGGTATTTTGATGCAT+TGG + chr6.2:24168160-24168179 MS.gene35998:CDS 30.0%
!!! TTATTTTGGGAGTTATGTGA+AGG - chr6.2:24168355-24168374 None:intergenic 30.0%
!!! TTGATGTAGGTTTTTGGTTA+CGG - chr6.2:24168555-24168574 None:intergenic 30.0%
AAAAACAAGAGAGCTATCCA+CGG - chr6.2:24168512-24168531 None:intergenic 35.0%
AAGAAGAAGTTAACACGGAT+TGG - chr6.2:24168485-24168504 None:intergenic 35.0%
AAGCTATCCTCAAGCATTTA+TGG - chr6.2:24167351-24167370 None:intergenic 35.0%
AATCTCAACATTCACGGTTA+TGG + chr6.2:24169493-24169512 MS.gene35998:CDS 35.0%
AATGCAATAGTTCATCGCAA+AGG - chr6.2:24169137-24169156 None:intergenic 35.0%
ACCAAGAATGTTTCCTTTAG+TGG + chr6.2:24167822-24167841 MS.gene35998:CDS 35.0%
AGCTTAAGATTTACGGACAA+TGG + chr6.2:24168615-24168634 MS.gene35998:CDS 35.0%
ATGGCAATAGCAATGTCATT+AGG - chr6.2:24169569-24169588 None:intergenic 35.0%
CCAACAGCAAAGAAGAAAAT+TGG - chr6.2:24168755-24168774 None:intergenic 35.0%
CTATTGCCATTAGTGATAGA+AGG + chr6.2:24169579-24169598 MS.gene35998:CDS 35.0%
CTTTCTCCTTCTATCACTAA+TGG - chr6.2:24169588-24169607 None:intergenic 35.0%
GAACACTGATGATAGTAGTT+TGG + chr6.2:24169682-24169701 MS.gene35998:CDS 35.0%
GAGAATATAGACAGCGAAAA+TGG - chr6.2:24168417-24168436 None:intergenic 35.0%
GCATCAAAATACCTATCAAC+AGG - chr6.2:24168158-24168177 None:intergenic 35.0%
TAAGTCATTGTGTGTTGCAT+TGG + chr6.2:24169466-24169485 MS.gene35998:CDS 35.0%
TCAGTTGTTGGAAACTTTGT+TGG + chr6.2:24168692-24168711 MS.gene35998:CDS 35.0%
TCCACTAAAGGAAACATTCT+TGG - chr6.2:24167826-24167845 None:intergenic 35.0%
TGGCAATAGCAATGTCATTA+GGG - chr6.2:24169568-24169587 None:intergenic 35.0%
TGTACCATAGAGATTGATGT+AGG - chr6.2:24168568-24168587 None:intergenic 35.0%
TGTCTCGAGCTTAAGATTTA+CGG + chr6.2:24168608-24168627 MS.gene35998:CDS 35.0%
TTTAATATCGCGTGGACAAT+TGG - chr6.2:24169054-24169073 None:intergenic 35.0%
! ACCAGTCATTGGAAAAGTAT+AGG - chr6.2:24169396-24169415 None:intergenic 35.0%
! AGGAGTCTTACTTTGGAAAT+TGG - chr6.2:24167207-24167226 None:intergenic 35.0%
! GATTTGACTCGTTCAAAACA+TGG + chr6.2:24168027-24168046 MS.gene35998:CDS 35.0%
! GGAGTCTTACTTTGGAAATT+GGG - chr6.2:24167206-24167225 None:intergenic 35.0%
! TAAGTAACTCCTTTTGGCAT+TGG - chr6.2:24167930-24167949 None:intergenic 35.0%
!! AGACAATTATCGATTCTACG+TGG + chr6.2:24168068-24168087 MS.gene35998:CDS 35.0%
!! CCAATTTTCTTCTTTGCTGT+TGG + chr6.2:24168752-24168771 MS.gene35998:CDS 35.0%
!! TGTTGGTAAGTAACTCCTTT+TGG - chr6.2:24167936-24167955 None:intergenic 35.0%
!! TTATGTCACAAGGTCTTGTT+TGG - chr6.2:24167662-24167681 None:intergenic 35.0%
!! TTTCAATCTCTTTGGAGTCT+TGG - chr6.2:24169646-24169665 None:intergenic 35.0%
!!! AGGTATTTTGATGCATTGGA+AGG + chr6.2:24168164-24168183 MS.gene35998:CDS 35.0%
!!! CTGGTTTTATATGCTTCTAC+AGG + chr6.2:24169215-24169234 MS.gene35998:intron 35.0%
!!! GACTTGAATTTTGGTTGTCT+TGG - chr6.2:24167903-24167922 None:intergenic 35.0%
!!! TTGAATTTTGGTTGTCTTGG+AGG - chr6.2:24167900-24167919 None:intergenic 35.0%
AACACTGGATGTAGCTCTTT+AGG - chr6.2:24168842-24168861 None:intergenic 40.0%
AACCCTAACCAGTGTTTATG+TGG - chr6.2:24169611-24169630 None:intergenic 40.0%
AAGTCTCAACCAATGCCAAA+AGG + chr6.2:24167918-24167937 MS.gene35998:CDS 40.0%
AATCTTATGGTACATCTCCG+CGG + chr6.2:24168379-24168398 MS.gene35998:CDS 40.0%
AGATGGTTCTCAAACTCGAA+AGG + chr6.2:24167956-24167975 MS.gene35998:CDS 40.0%
AGTTATGTGAAGGAATTCGG+TGG - chr6.2:24168345-24168364 None:intergenic 40.0%
ATATACCGAACGATGAAACG+GGG - chr6.2:24168268-24168287 None:intergenic 40.0%
ATTTACGGACAATGGATGTC+CGG + chr6.2:24168623-24168642 MS.gene35998:CDS 40.0%
CAATAGCAAGCTATTGTGGT+GGG - chr6.2:24169098-24169117 None:intergenic 40.0%
CATATACCGAACGATGAAAC+GGG - chr6.2:24168269-24168288 None:intergenic 40.0%
CGGAGATGTACCATAAGATT+AGG - chr6.2:24168379-24168398 None:intergenic 40.0%
CTCTTTAGGTAGTGTTGCAT+TGG - chr6.2:24168828-24168847 None:intergenic 40.0%
GAACTGCTTCGAAGTAGAAA+AGG - chr6.2:24168445-24168464 None:intergenic 40.0%
GACATGTCCATAAATGCTTG+AGG + chr6.2:24167341-24167360 MS.gene35998:intron 40.0%
GAGTTTGAGAACCATCTTGT+TGG - chr6.2:24167953-24167972 None:intergenic 40.0%
GCAACAAAGAGAAAGAACAC+TGG - chr6.2:24168857-24168876 None:intergenic 40.0%
GCATATACCGAACGATGAAA+CGG - chr6.2:24168270-24168289 None:intergenic 40.0%
GGAGTTACTTACCAACAAGA+TGG + chr6.2:24167939-24167958 MS.gene35998:CDS 40.0%
GGGAGTTATGTGAAGGAATT+CGG - chr6.2:24168348-24168367 None:intergenic 40.0%
GTCAGGATCAATTTCTTCAG+AGG + chr6.2:24169240-24169259 MS.gene35998:CDS 40.0%
GTGCGAAGAAGAAGTTAACA+CGG - chr6.2:24168490-24168509 None:intergenic 40.0%
TCAGACATTGCAATTCCTGA+TGG - chr6.2:24167876-24167895 None:intergenic 40.0%
TGCTACCTCATGACAAACAA+TGG + chr6.2:24168225-24168244 MS.gene35998:CDS 40.0%
TTAGCAGCCAAGCAATTCTT+TGG + chr6.2:24168297-24168316 MS.gene35998:CDS 40.0%
! AACTTTGTTGGAGCGTTACT+TGG + chr6.2:24168704-24168723 MS.gene35998:CDS 40.0%
! AAGCCACATAAACACTGGTT+AGG + chr6.2:24169605-24169624 MS.gene35998:CDS 40.0%
! AATGGTAGCTATAAGTACCG+CGG - chr6.2:24168399-24168418 None:intergenic 40.0%
! ACAGATTTTCTCTTGCATGG+TGG + chr6.2:24169369-24169388 MS.gene35998:intron 40.0%
! ACGCTACAAGAAGCTTTGAT+AGG + chr6.2:24168126-24168145 MS.gene35998:CDS 40.0%
! AGCCACATAAACACTGGTTA+GGG + chr6.2:24169606-24169625 MS.gene35998:CDS 40.0%
! ATAGGGCATTACCTGTTGAT+AGG + chr6.2:24168144-24168163 MS.gene35998:CDS 40.0%
! ATTAGTGATGGAGTTTCTGG+AGG - chr6.2:24167123-24167142 None:intergenic 40.0%
! CAGATTTTCTCTTGCATGGT+GGG + chr6.2:24169370-24169389 MS.gene35998:intron 40.0%
! CGCTACAAGAAGCTTTGATA+GGG + chr6.2:24168127-24168146 MS.gene35998:CDS 40.0%
! CTTACTTTGGAAATTGGGCT+TGG - chr6.2:24167201-24167220 None:intergenic 40.0%
! GATGAACTATTGCATTGACC+TGG + chr6.2:24169141-24169160 MS.gene35998:intron 40.0%
! GCCTATACTTTTCCAATGAC+TGG + chr6.2:24169392-24169411 MS.gene35998:CDS 40.0%
! GGCTCTAATCTCAACATTCA+CGG + chr6.2:24169487-24169506 MS.gene35998:CDS 40.0%
! GGGTTTTCCAAAGAATTGCT+TGG - chr6.2:24168307-24168326 None:intergenic 40.0%
! TTAGGTAGTGTTGCATTGGT+TGG - chr6.2:24168824-24168843 None:intergenic 40.0%
!! AGAAGTTAACACGGATTGGA+TGG - chr6.2:24168481-24168500 None:intergenic 40.0%
!! ATTTTGATCGGCATCGTTTG+AGG - chr6.2:24169729-24169748 None:intergenic 40.0%
!! CACCACAATAGCTTGCTATT+GGG + chr6.2:24169097-24169116 MS.gene35998:intron 40.0%
!! TAGTGTTGCTTCAATGGCTT+GGG + chr6.2:24168883-24168902 MS.gene35998:CDS 40.0%
!!! GCTCTCTTGTTTTTAGCACT+AGG + chr6.2:24168518-24168537 MS.gene35998:CDS 40.0%
!!! TGTAGGTTTTTGGTTACGGA+TGG - chr6.2:24168551-24168570 None:intergenic 40.0%
AACAATGGCCGTTTCTTCTC+CGG + chr6.2:24168240-24168259 MS.gene35998:CDS 45.0%
AACGGCCATTGTTTGTCATG+AGG - chr6.2:24168233-24168252 None:intergenic 45.0%
AGCACTTGTGAGACTGTTTG+AGG + chr6.2:24167477-24167496 MS.gene35998:intron 45.0%
ATATGCTTCTACAGGCTGTC+AGG + chr6.2:24169223-24169242 MS.gene35998:intron 45.0%
CAAGCCATTGAAGCAACACT+AGG - chr6.2:24168884-24168903 None:intergenic 45.0%
CCAATAGCAAGCTATTGTGG+TGG - chr6.2:24169099-24169118 None:intergenic 45.0%
CCATCTTGTGCATTTCCACT+CGG - chr6.2:24168101-24168120 None:intergenic 45.0%
GACCCAATAGCAAGCTATTG+TGG - chr6.2:24169102-24169121 None:intergenic 45.0%
GACTCGTTCAAAACATGGTC+TGG + chr6.2:24168032-24168051 MS.gene35998:CDS 45.0%
GGAGAAAGCCACATAAACAC+TGG + chr6.2:24169600-24169619 MS.gene35998:CDS 45.0%
GTCTCACAAGTGCTTATGTC+AGG - chr6.2:24167471-24167490 None:intergenic 45.0%
TCATCGTTCGGTATATGCCT+CGG + chr6.2:24168272-24168291 MS.gene35998:CDS 45.0%
TCGTTCAAAACATGGTCTGG+TGG + chr6.2:24168035-24168054 MS.gene35998:CDS 45.0%
TCTACTTCGAAGCAGTTCGT+CGG + chr6.2:24168447-24168466 MS.gene35998:CDS 45.0%
TTAACTTCTTCTTCGCACCG+TGG + chr6.2:24168492-24168511 MS.gene35998:CDS 45.0%
TTCAAAACATGGTCTGGTGG+AGG + chr6.2:24168038-24168057 MS.gene35998:CDS 45.0%
! AACTATTGCATTGACCTGGC+GGG + chr6.2:24169145-24169164 MS.gene35998:intron 45.0%
! ATGGCTTGGGCTAAGATTCA+AGG + chr6.2:24168896-24168915 MS.gene35998:CDS 45.0%
! ATGTGAAGGAATTCGGTGGT+AGG - chr6.2:24168341-24168360 None:intergenic 45.0%
! CACTGGTTAGGGTTCAGATA+TGG + chr6.2:24169617-24169636 MS.gene35998:CDS 45.0%
! GAACTATTGCATTGACCTGG+CGG + chr6.2:24169144-24169163 MS.gene35998:intron 45.0%
! GCATCGATGGGACTAATTGA+AGG + chr6.2:24168728-24168747 MS.gene35998:CDS 45.0%
!! AGCTCCTAGTGTTGCTTCAA+TGG + chr6.2:24168877-24168896 MS.gene35998:CDS 45.0%
!! CCACCACAATAGCTTGCTAT+TGG + chr6.2:24169096-24169115 MS.gene35998:intron 45.0%
!! CTAGTGTTGCTTCAATGGCT+TGG + chr6.2:24168882-24168901 MS.gene35998:CDS 45.0%
!!! AGGTTTTTGGTTACGGATGG+AGG - chr6.2:24168548-24168567 None:intergenic 45.0%
!!! ATATTAAATTTATTTTTTGA+GGG + chr6.2:24169066-24169085 MS.gene35998:intron 5.0%
AATGGATGTCCGGTGGACAA+AGG + chr6.2:24168633-24168652 MS.gene35998:CDS 50.0%
CCGAGTGGAAATGCACAAGA+TGG + chr6.2:24168098-24168117 MS.gene35998:CDS 50.0%
CTACGTGGAAAAGAACCGAG+TGG + chr6.2:24168083-24168102 MS.gene35998:CDS 50.0%
CTACTTCGAAGCAGTTCGTC+GGG + chr6.2:24168448-24168467 MS.gene35998:CDS 50.0%
GCAATTGCTGCACCAGTCAT+TGG - chr6.2:24169407-24169426 None:intergenic 50.0%
GGCATGCTGACAGACATTGA+AGG - chr6.2:24167756-24167775 None:intergenic 50.0%
TGATCGGCATCGTTTGAGGA+CGG - chr6.2:24169725-24169744 None:intergenic 50.0%
!! AGCGTTACTTGGTGCATCGA+TGG + chr6.2:24168715-24168734 MS.gene35998:CDS 50.0%
!! GCGTTACTTGGTGCATCGAT+GGG + chr6.2:24168716-24168735 MS.gene35998:CDS 50.0%
ACAAAGGCGGCTTTCGAAGG+TGG + chr6.2:24168649-24168668 MS.gene35998:CDS 55.0%
ACGGGGAACCGGAGAAGAAA+CGG - chr6.2:24168251-24168270 None:intergenic 55.0%
CGAACGATGAAACGGGGAAC+CGG - chr6.2:24168262-24168281 None:intergenic 55.0%
CGGTTCCCCGTTTCATCGTT+CGG + chr6.2:24168260-24168279 MS.gene35998:CDS 55.0%
GCATCGTTTGAGGACGGTTG+TGG - chr6.2:24169719-24169738 None:intergenic 55.0%
TACGGACAATGGATGTCCGG+TGG + chr6.2:24168626-24168645 MS.gene35998:CDS 55.0%
TGGACAAAGGCGGCTTTCGA+AGG + chr6.2:24168646-24168665 MS.gene35998:CDS 55.0%
TTGCTTGGCTGCTAACTCCG+AGG - chr6.2:24168292-24168311 None:intergenic 55.0%
! GAATTCGGTGGTAGGCGATG+TGG - chr6.2:24168333-24168352 None:intergenic 55.0%
CGAAAGCCGCCTTTGTCCAC+CGG - chr6.2:24168645-24168664 None:intergenic 60.0%
GGATGTCCGGTGGACAAAGG+CGG + chr6.2:24168636-24168655 MS.gene35998:CDS 60.0%
GGTGGTAGGCGATGTGGCTA+GGG - chr6.2:24168327-24168346 None:intergenic 60.0%
!!! TTTTTTTGGTGGGGCCCGCC+AGG - chr6.2:24169162-24169181 None:intergenic 60.0%
CGGTGGTAGGCGATGTGGCT+AGG - chr6.2:24168328-24168347 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 24167078 24169760 24167078 ID=MS.gene35998
chr6.2 mRNA 24167078 24169760 24167078 ID=MS.gene35998.t1;Parent=MS.gene35998
chr6.2 exon 24167078 24167215 24167078 ID=MS.gene35998.t1.exon1;Parent=MS.gene35998.t1
chr6.2 CDS 24167078 24167215 24167078 ID=cds.MS.gene35998.t1;Parent=MS.gene35998.t1
chr6.2 exon 24167720 24168185 24167720 ID=MS.gene35998.t1.exon2;Parent=MS.gene35998.t1
chr6.2 CDS 24167720 24168185 24167720 ID=cds.MS.gene35998.t1;Parent=MS.gene35998.t1
chr6.2 exon 24168216 24168979 24168216 ID=MS.gene35998.t1.exon3;Parent=MS.gene35998.t1
chr6.2 CDS 24168216 24168979 24168216 ID=cds.MS.gene35998.t1;Parent=MS.gene35998.t1
chr6.2 exon 24169237 24169268 24169237 ID=MS.gene35998.t1.exon4;Parent=MS.gene35998.t1
chr6.2 CDS 24169237 24169268 24169237 ID=cds.MS.gene35998.t1;Parent=MS.gene35998.t1
chr6.2 exon 24169373 24169760 24169373 ID=MS.gene35998.t1.exon5;Parent=MS.gene35998.t1
chr6.2 CDS 24169373 24169760 24169373 ID=cds.MS.gene35998.t1;Parent=MS.gene35998.t1
Gene Sequence

>MS.gene35998

ATGGAAAATCACATAACTCTTGAAATCACAGAACAAGCTTCTCCTCCAGAAACTCCATCACTAATAAAGTATATATCATCAAATGAACTTGAAGATTTTGATTCATTTGAATCTCAGTTTCCAAGCCCAATTTCCAAAGTAAGACTCCTTTTTAAGTCATTTTTATTGCTTATGATAAAATTTAAAGTGCCTATATCATTTTAGAATTCCTCTTTATGTTCATGATTTGGAGACTGTTTGTATTACTTACGGAAACAACTTACGACATGTCCATAAATGCTTGAGGATAGCTTATGAAAACAGCTTATATATTGCATAAAAATTGTTACTTGATTTTATCTTTTGTTATAGAAATATGGTATGTTTCAATTGGTTTATTTTGACTTATTTCCTGACATAAGCACTTGTGAGACTGTTTGAGGCAATTTATATAAACAACTTATGACATGTTCATAAATTAATTTCTTCTTATTTCATTAGCCTCTTCAAAATAGCTTATGAAACCAACTTATTTTATCTTTTGTTATAGAATTATCTTATATATAAGCACTTATATGTAAGCGCTTAATTAAGGTCTTTATCCAAACAAGACCTTGTGACATAACTAAAATCTAACTTTTTTTTTCCATGTTTTTTCAATAGGAAAGTGAAGAAACATACAATCATCAAAGAAAACCTTCAATGTCTGTCAGCATGCCACTTTGTTATAAAGAAACTCAACTTCAATCACTAAACATCAACAATACCAAGAATGTTTCCTTTAGTGGAGAAAATGTTATTATCAAAGATGATTTTCCATCAGGAATTGCAATGTCTGAGCCTCCAAGACAACCAAAATTCAAGTCTCAACCAATGCCAAAAGGAGTTACTTACCAACAAGATGGTTCTCAAACTCGAAAGGCTAATCGTAATTATAATCAACCTGGAATAAAAATGTTTAGAGATAAGAGATTTGACTCGTTCAAAACATGGTCTGGTGGAGGACTTGAGAGACAATTATCGATTCTACGTGGAAAAGAACCGAGTGGAAATGCACAAGATGGTAACAACGCTACAAGAAGCTTTGATAGGGCATTACCTGTTGATAGGTATTTTGATGCATTGGAAGGTCCAGAATTAGAAACTCTTAAGTCATCAGAAGAGATAATGCTACCTCATGACAAACAATGGCCGTTTCTTCTCCGGTTCCCCGTTTCATCGTTCGGTATATGCCTCGGAGTTAGCAGCCAAGCAATTCTTTGGAAAACCCTAGCCACATCGCCTACCACCGAATTCCTTCACATAACTCCCAAAATAAACCTAATCTTATGGTACATCTCCGCGGTACTTATAGCTACCATTTTCGCTGTCTATATTCTCAAACTCCTTTTCTACTTCGAAGCAGTTCGTCGGGAATACTACCATCCAATCCGTGTTAACTTCTTCTTCGCACCGTGGATAGCTCTCTTGTTTTTAGCACTAGGAGTTCCTCCATCCGTAACCAAAAACCTACATCAATCTCTATGGTACATTCTTATGGCACCAATATTATGTCTCGAGCTTAAGATTTACGGACAATGGATGTCCGGTGGACAAAGGCGGCTTTCGAAGGTGGCGAACCCTTCAAATCATTTATCAGTTGTTGGAAACTTTGTTGGAGCGTTACTTGGTGCATCGATGGGACTAATTGAAGGACCAATTTTCTTCTTTGCTGTTGGACTTGCTCATTACACTGTGTTATTTGTGACACTTTATCAAAGACTTCCAACCAATGCAACACTACCTAAAGAGCTACATCCAGTGTTCTTTCTCTTTGTTGCAGCTCCTAGTGTTGCTTCAATGGCTTGGGCTAAGATTCAAGGTTCTTTTGATTATGGATCAAGGATTGCTTATTTCATTGCATTGTTCCTTTATTTCTCATTGGTAAGTTTTATTGTCACACTTTTATTTGAAATAATCATAATTAGTTATCAATTTAATATCTGATATATAAGCCAATTGTCCACGCGATATTAAATTTATTTTTTGAGGGGGATAGCCCACCACAATAGCTTGCTATTGGGTCTCTCAAGTGTCTCCTTTGCGATGAACTATTGCATTGACCTGGCGGGCCCCACCAAAAAAATATGCATAATTGTTTATCATTGAAATTTACTCACTGGTTTTATATGCTTCTACAGGCTGTCAGGATCAATTTCTTCAGAGGATTTAAGTAAGTTACATTAAATCTCCCCTATCTAGTTATATTATTTAATTAATTTCTCAATACTGTTGAATTTTCTTTCATAAATTAATTTTTTTATGTTATTTTTACAGATTTTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACAATAAGATACTCAAATCAAGTACCAAATATTGTCACTAAGTCATTGTGTGTTGCATTGGCTCTAATCTCAACATTCACGGTTATGGCACTTCTTCTATCAACAATATTGCATGCATTTGTCTTTAGAGATCTCTTCCCTAATGACATTGCTATTGCCATTAGTGATAGAAGGAGAAAGCCACATAAACACTGGTTAGGGTTCAGATATGGAAGCCAAGACTCCAAAGAGATTGAAAATTACTTGAAGTTTGTGAACACTGATGATAGTAGTTTGGATGATTCTACGCCACAACCGTCCTCAAACGATGCCGATCAAAATTTGCCAAAATAA
Protein sequence

>MS.gene35998.t1

MENHITLEITEQASPPETPSLIKYISSNELEDFDSFESQFPSPISKESEETYNHQRKPSMSVSMPLCYKETQLQSLNINNTKNVSFSGENVIIKDDFPSGIAMSEPPRQPKFKSQPMPKGVTYQQDGSQTRKANRNYNQPGIKMFRDKRFDSFKTWSGGGLERQLSILRGKEPSGNAQDGNNATRSFDRALPVDRYFDALEEEIMLPHDKQWPFLLRFPVSSFGICLGVSSQAILWKTLATSPTTEFLHITPKINLILWYISAVLIATIFAVYILKLLFYFEAVRREYYHPIRVNFFFAPWIALLFLALGVPPSVTKNLHQSLWYILMAPILCLELKIYGQWMSGGQRRLSKVANPSNHLSVVGNFVGALLGASMGLIEGPIFFFAVGLAHYTVLFVTLYQRLPTNATLPKELHPVFFLFVAAPSVASMAWAKIQGSFDYGSRIAYFIALFLYFSLAVRINFFRGFKFSLAWWAYTFPMTGAAIATIRYSNQVPNIVTKSLCVALALISTFTVMALLLSTILHAFVFRDLFPNDIAIAISDRRRKPHKHWLGFRYGSQDSKEIENYLKFVNTDDSSLDDSTPQPSSNDADQNLPK