Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36137.t1 | XP_024626046.1 | 78 | 396 | 24 | 4 | 3 | 335 | 1 | 396 | 2.80E-158 | 568.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36137.t1 | A0A1S2Z1G1 | 61.7 | 397 | 89 | 6 | 2 | 335 | 4 | 400 | 5.4e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053082 | MS.gene36137 | 0.805258 | 1.46E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene36137 | 0.804767 | 1.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGATGAGGAGGCTAATA+TGG | 0.216857 | 8.3:+51747141 | MS.gene36137:CDS |
| CAACAAGAATGTTAGATATA+TGG | 0.241965 | 8.3:+51745203 | MS.gene36137:CDS |
| CATATATCTAACATTCTTGT+TGG | 0.301930 | 8.3:-51745202 | None:intergenic |
| AATAATGAAGATAATGAAAA+TGG | 0.312873 | 8.3:+51747008 | MS.gene36137:CDS |
| TCTCGCAATTCATCAGTTAT+TGG | 0.316205 | 8.3:-51745521 | None:intergenic |
| CCCAAAATTTATTGATGAAA+AGG | 0.332658 | 8.3:+51745873 | MS.gene36137:CDS |
| ACAATGGAAGGGTGATTTAA+AGG | 0.335770 | 8.3:+51745577 | MS.gene36137:CDS |
| TGATTTCATAATTGTTAAGT+TGG | 0.349332 | 8.3:+51745237 | MS.gene36137:CDS |
| GTTGGACCTCTACGTCGTTT+AGG | 0.354697 | 8.3:-51745184 | None:intergenic |
| AATGTTAGATATATGGGAAT+TGG | 0.359232 | 8.3:+51745210 | MS.gene36137:CDS |
| GAAGAAAGAAATTGAGTATT+GGG | 0.364612 | 8.3:+51744884 | MS.gene36137:CDS |
| AACAAGAATGTTAGATATAT+GGG | 0.370254 | 8.3:+51745204 | MS.gene36137:CDS |
| ATGACACTTTCTGTATGATT+AGG | 0.370466 | 8.3:-51744992 | None:intergenic |
| GGAAGTAATGGTGCAGAAAC+TGG | 0.370862 | 8.3:+51744962 | MS.gene36137:intron |
| ATTGTTAAGTTGGATAACTA+TGG | 0.378651 | 8.3:+51745247 | MS.gene36137:CDS |
| ATCGTGGGTTGGTTGAATAT+TGG | 0.383055 | 8.3:+51745683 | MS.gene36137:CDS |
| TCTTAGGTAGTATTGTTAGA+AGG | 0.387853 | 8.3:+51745308 | MS.gene36137:CDS |
| CTTCATTATTGCTTGGACTA+GGG | 0.402946 | 8.3:-51746995 | None:intergenic |
| TCTTCATTATTGCTTGGACT+AGG | 0.437938 | 8.3:-51746996 | None:intergenic |
| GATAACTATGGACGACCAAT+TGG | 0.442054 | 8.3:+51745259 | MS.gene36137:CDS |
| TAACAATACTACCTAAGAAA+CGG | 0.448034 | 8.3:-51745303 | None:intergenic |
| AATGGTGCAGAAACTGGTTC+TGG | 0.452750 | 8.3:+51744968 | MS.gene36137:CDS |
| CGAAGAAAGAAATTGAGTAT+TGG | 0.453159 | 8.3:+51744883 | MS.gene36137:CDS |
| ACAAGCAGGGTTCTATGTCT+TGG | 0.453913 | 8.3:+51746489 | MS.gene36137:CDS |
| GTATTAGGATGTCCATTGTA+TGG | 0.455444 | 8.3:+51745837 | MS.gene36137:intron |
| TCATTATCTTCATTATTGCT+TGG | 0.458194 | 8.3:-51747002 | None:intergenic |
| AACAATACTACCTAAGAAAC+GGG | 0.459809 | 8.3:-51745302 | None:intergenic |
| GCGTGATAGAGTTAAGACTA+TGG | 0.466626 | 8.3:+51746628 | MS.gene36137:CDS |
| GCCGGTCCTTCGTCACCAAT+TGG | 0.479150 | 8.3:-51745274 | None:intergenic |
| GAAACTCGCACACGTAAAGA+TGG | 0.479558 | 8.3:+51746019 | MS.gene36137:CDS |
| AAGGGTGATTTAAAGGCAGC+TGG | 0.488397 | 8.3:+51745584 | MS.gene36137:CDS |
| TTCATTATTGCTTGGACTAG+GGG | 0.495352 | 8.3:-51746994 | None:intergenic |
| GATAATACAAGCTGCTAGAC+AGG | 0.497499 | 8.3:+51746715 | MS.gene36137:CDS |
| TATTAGGATGTCCATTGTAT+GGG | 0.504670 | 8.3:+51745838 | MS.gene36137:intron |
| TTTCATATTTAGAGCAGCAA+TGG | 0.507811 | 8.3:+51744858 | None:intergenic |
| CTTGGACTAGGGGAATTCAA+AGG | 0.511231 | 8.3:-51746984 | None:intergenic |
| ACCAATTGGTGACGAAGGAC+CGG | 0.512862 | 8.3:+51745273 | MS.gene36137:CDS |
| CGCAATTCATCAGTTATTGG+AGG | 0.513443 | 8.3:-51745518 | None:intergenic |
| TCAATCAACTCAAAACAAGC+AGG | 0.514800 | 8.3:+51746475 | MS.gene36137:CDS |
| CATCGAGAAAATAGTAATGA+AGG | 0.518707 | 8.3:+51744907 | MS.gene36137:CDS |
| TTGGACTAGGGGAATTCAAA+GGG | 0.525985 | 8.3:-51746983 | None:intergenic |
| CTAGGGGAATTCAAAGGGTT+AGG | 0.527124 | 8.3:-51746978 | None:intergenic |
| ATGTAAATATCTTGACGTCC+AGG | 0.530259 | 8.3:-51745995 | None:intergenic |
| TCTTCAGCTTCTATGTCAGA+AGG | 0.532194 | 8.3:-51745043 | None:intergenic |
| AGTGAGATTCTACAGACTCA+TGG | 0.536309 | 8.3:-51745015 | None:intergenic |
| AAGGGAAAAGGAGTGATGCC+TGG | 0.537898 | 8.3:+51745977 | MS.gene36137:CDS |
| AGCGATGCTGAAACAAATAG+AGG | 0.563433 | 8.3:+51745390 | MS.gene36137:CDS |
| ATTTCTTGTAGGTGAAGATG+AGG | 0.564889 | 8.3:+51747129 | MS.gene36137:intron |
| CGAAGCTCAATATCGTGGGT+TGG | 0.565385 | 8.3:+51745672 | MS.gene36137:intron |
| CCTAAGAAACGGGTAAAAGC+CGG | 0.583490 | 8.3:-51745292 | None:intergenic |
| GCAGGGTTCTATGTCTTGGA+AGG | 0.592209 | 8.3:+51746493 | MS.gene36137:CDS |
| GAAGAAGAACGTATTGTCGA+AGG | 0.600104 | 8.3:+51745064 | MS.gene36137:CDS |
| GAGAAAATAGTAATGAAGGA+AGG | 0.614319 | 8.3:+51744911 | MS.gene36137:CDS |
| TCTTGTAGGTGAAGATGAGG+AGG | 0.617773 | 8.3:+51747132 | MS.gene36137:intron |
| AAACTCGCACACGTAAAGAT+GGG | 0.619883 | 8.3:+51746020 | MS.gene36137:CDS |
| TTGACGAAGCTCAATATCGT+GGG | 0.624589 | 8.3:+51745668 | MS.gene36137:intron |
| CAATCAACTCAAAACAAGCA+GGG | 0.628434 | 8.3:+51746476 | MS.gene36137:CDS |
| GATAGAGTTAAGACTATGGA+GGG | 0.632932 | 8.3:+51746632 | MS.gene36137:CDS |
| ATTGACGAAGCTCAATATCG+TGG | 0.636862 | 8.3:+51745667 | MS.gene36137:intron |
| TGATAGAGTTAAGACTATGG+AGG | 0.640558 | 8.3:+51746631 | MS.gene36137:CDS |
| ATTAGGATGTCCATTGTATG+GGG | 0.646765 | 8.3:+51745839 | MS.gene36137:intron |
| GGACGACCAATTGGTGACGA+AGG | 0.646936 | 8.3:+51745268 | MS.gene36137:CDS |
| GTAGAACCTAAACGACGTAG+AGG | 0.676681 | 8.3:+51745178 | MS.gene36137:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTCTTTGTTTTTT+AGG | + | chr8.3:51747058-51747077 | MS.gene36137:intron | 10.0% |
| !! | AAAACATAATTAAAAACAGT+TGG | - | chr8.3:51746408-51746427 | None:intergenic | 15.0% |
| !! | AATAATGAAGATAATGAAAA+TGG | + | chr8.3:51747008-51747027 | MS.gene36137:CDS | 15.0% |
| !!! | AACTGTTTTTAATTATGTTT+TGG | + | chr8.3:51746407-51746426 | MS.gene36137:intron | 15.0% |
| !!! | ACTGTTTTTAATTATGTTTT+GGG | + | chr8.3:51746408-51746427 | MS.gene36137:intron | 15.0% |
| !!! | TTGTTTTTTGTATTTTTCAT+TGG | + | chr8.3:51745897-51745916 | MS.gene36137:intron | 15.0% |
| !! | AACAAGAATGTTAGATATAT+GGG | + | chr8.3:51745204-51745223 | MS.gene36137:CDS | 20.0% |
| !! | ACCTAAATCTAAAAAATCAA+AGG | + | chr8.3:51746580-51746599 | MS.gene36137:CDS | 20.0% |
| !! | ACTAAAAAAACATAGTAATG+AGG | + | chr8.3:51746442-51746461 | MS.gene36137:CDS | 20.0% |
| !! | CAAATGAACAAAATAGAAAA+TGG | - | chr8.3:51745103-51745122 | None:intergenic | 20.0% |
| !! | TGATTTCATAATTGTTAAGT+TGG | + | chr8.3:51745237-51745256 | MS.gene36137:CDS | 20.0% |
| !! | TTCTTGTAGTAATTATGATT+TGG | + | chr8.3:51746184-51746203 | MS.gene36137:intron | 20.0% |
| !!! | AATCTGATTTGAATGAAAAA+TGG | + | chr8.3:51745552-51745571 | MS.gene36137:CDS | 20.0% |
| !!! | ACCTTTGATTTTTTAGATTT+AGG | - | chr8.3:51746584-51746603 | None:intergenic | 20.0% |
| !!! | ACCTTTTCATCAATAAATTT+TGG | - | chr8.3:51745877-51745896 | None:intergenic | 20.0% |
| !!! | CCTTTTCATCAATAAATTTT+GGG | - | chr8.3:51745876-51745895 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTTTATTTCTTGT+AGG | + | chr8.3:51747118-51747137 | MS.gene36137:intron | 20.0% |
| !!! | TTTGGTTTTTAGATGAAAAA+GGG | + | chr8.3:51745959-51745978 | MS.gene36137:intron | 20.0% |
| ! | AAACATATAACCTGTTTGTT+TGG | + | chr8.3:51745941-51745960 | MS.gene36137:intron | 25.0% |
| ! | AATGTTAGATATATGGGAAT+TGG | + | chr8.3:51745210-51745229 | MS.gene36137:CDS | 25.0% |
| ! | ATACTTTCAAATGGTATAAC+AGG | - | chr8.3:51746143-51746162 | None:intergenic | 25.0% |
| ! | CAACAAGAATGTTAGATATA+TGG | + | chr8.3:51745203-51745222 | MS.gene36137:CDS | 25.0% |
| ! | CAAGATATCATACTTTCAAA+TGG | - | chr8.3:51746152-51746171 | None:intergenic | 25.0% |
| ! | CATATATCTAACATTCTTGT+TGG | - | chr8.3:51745205-51745224 | None:intergenic | 25.0% |
| ! | CCCAAAATTTATTGATGAAA+AGG | + | chr8.3:51745873-51745892 | MS.gene36137:CDS | 25.0% |
| ! | GAAGAAAGAAATTGAGTATT+GGG | + | chr8.3:51744884-51744903 | MS.gene36137:CDS | 25.0% |
| ! | TAACAATACTACCTAAGAAA+CGG | - | chr8.3:51745306-51745325 | None:intergenic | 25.0% |
| ! | TACGTATAATATGTATGACT+TGG | - | chr8.3:51745733-51745752 | None:intergenic | 25.0% |
| ! | TCATTATCTTCATTATTGCT+TGG | - | chr8.3:51747005-51747024 | None:intergenic | 25.0% |
| !! | TGGCTTGTAAAATATAGTTT+AGG | + | chr8.3:51746251-51746270 | MS.gene36137:intron | 25.0% |
| !! | TTGTAAGCATCTAACATTTT+TGG | + | chr8.3:51746074-51746093 | MS.gene36137:intron | 25.0% |
| !! | TTTTAGATGAAAAAGGGAAA+AGG | + | chr8.3:51745965-51745984 | MS.gene36137:intron | 25.0% |
| !! | TTTTCGATTTTCTGTGATAT+AGG | + | chr8.3:51746935-51746954 | MS.gene36137:intron | 25.0% |
| !!! | AAATCAAGAGTATTGCTAAA+TGG | - | chr8.3:51746894-51746913 | None:intergenic | 25.0% |
| !!! | AATTATGATTTGGTGAGATA+TGG | + | chr8.3:51746194-51746213 | MS.gene36137:intron | 25.0% |
| !!! | ATCGCTTTTTTATTATCTGA+GGG | - | chr8.3:51745376-51745395 | None:intergenic | 25.0% |
| !!! | ATTGTTAAGTTGGATAACTA+TGG | + | chr8.3:51745247-51745266 | MS.gene36137:CDS | 25.0% |
| !!! | GACATATTTTCTAAAGTACA+AGG | + | chr8.3:51746518-51746537 | MS.gene36137:intron | 25.0% |
| !!! | GTTTGGTTTTTAGATGAAAA+AGG | + | chr8.3:51745958-51745977 | MS.gene36137:intron | 25.0% |
| !!! | TTAATTATGTTTTGGGTTTC+AGG | + | chr8.3:51746415-51746434 | MS.gene36137:intron | 25.0% |
| !!! | TTCAAAGTTTTGATGTTGAT+GGG | - | chr8.3:51745346-51745365 | None:intergenic | 25.0% |
| !!! | TTCATTGATTTAAGAGAACA+TGG | + | chr8.3:51746780-51746799 | MS.gene36137:intron | 25.0% |
| !!! | TTTCAAAGTTTTGATGTTGA+TGG | - | chr8.3:51745347-51745366 | None:intergenic | 25.0% |
| AAAAAACATAGTAATGAGGC+TGG | + | chr8.3:51746446-51746465 | MS.gene36137:CDS | 30.0% | |
| AACAATACTACCTAAGAAAC+GGG | - | chr8.3:51745305-51745324 | None:intergenic | 30.0% | |
| ATGACACTTTCTGTATGATT+AGG | - | chr8.3:51744995-51745014 | None:intergenic | 30.0% | |
| ATTAAAAACAGTTGGCAATC+AGG | - | chr8.3:51746400-51746419 | None:intergenic | 30.0% | |
| CATCGAGAAAATAGTAATGA+AGG | + | chr8.3:51744907-51744926 | MS.gene36137:CDS | 30.0% | |
| CATCTAAAAACCAAACAAAC+AGG | - | chr8.3:51745954-51745973 | None:intergenic | 30.0% | |
| CGAAGAAAGAAATTGAGTAT+TGG | + | chr8.3:51744883-51744902 | MS.gene36137:CDS | 30.0% | |
| GAGAAAATAGTAATGAAGGA+AGG | + | chr8.3:51744911-51744930 | MS.gene36137:CDS | 30.0% | |
| GTTCTACATTCACAAGTAAA+AGG | - | chr8.3:51745165-51745184 | None:intergenic | 30.0% | |
| TATTAGGATGTCCATTGTAT+GGG | + | chr8.3:51745838-51745857 | MS.gene36137:intron | 30.0% | |
| TCTTAGGTAGTATTGTTAGA+AGG | + | chr8.3:51745308-51745327 | MS.gene36137:CDS | 30.0% | |
| TGAATGAAAAATGGAGACAA+TGG | + | chr8.3:51745561-51745580 | MS.gene36137:CDS | 30.0% | |
| !! | TTGATTCAAAGTCGATTTTC+TGG | + | chr8.3:51746677-51746696 | MS.gene36137:CDS | 30.0% |
| !!! | CATCGCTTTTTTATTATCTG+AGG | - | chr8.3:51745377-51745396 | None:intergenic | 30.0% |
| !!! | GTAGAGTATTGTTTGTTTTG+TGG | + | chr8.3:51746231-51746250 | MS.gene36137:intron | 30.0% |
| AAATTGAGTTACGTGATGCT+AGG | + | chr8.3:51745644-51745663 | MS.gene36137:intron | 35.0% | |
| ACAATGGAAGGGTGATTTAA+AGG | + | chr8.3:51745577-51745596 | MS.gene36137:CDS | 35.0% | |
| ACAATGGACATCCTAATACT+TGG | - | chr8.3:51745836-51745855 | None:intergenic | 35.0% | |
| ATGTAAATATCTTGACGTCC+AGG | - | chr8.3:51745998-51746017 | None:intergenic | 35.0% | |
| ATTAGGATGTCCATTGTATG+GGG | + | chr8.3:51745839-51745858 | MS.gene36137:intron | 35.0% | |
| ATTTCTTGTAGGTGAAGATG+AGG | + | chr8.3:51747129-51747148 | MS.gene36137:intron | 35.0% | |
| CAATCAACTCAAAACAAGCA+GGG | + | chr8.3:51746476-51746495 | MS.gene36137:CDS | 35.0% | |
| CTTCATTATTGCTTGGACTA+GGG | - | chr8.3:51746998-51747017 | None:intergenic | 35.0% | |
| GAAAAATGGAGACAATGGAA+GGG | + | chr8.3:51745566-51745585 | MS.gene36137:CDS | 35.0% | |
| GATAGAGTTAAGACTATGGA+GGG | + | chr8.3:51746632-51746651 | MS.gene36137:CDS | 35.0% | |
| GCTGTTAATACAAAAGCAGT+TGG | - | chr8.3:51746347-51746366 | None:intergenic | 35.0% | |
| GTATTAGGATGTCCATTGTA+TGG | + | chr8.3:51745837-51745856 | MS.gene36137:intron | 35.0% | |
| TCAATCAACTCAAAACAAGC+AGG | + | chr8.3:51746475-51746494 | MS.gene36137:CDS | 35.0% | |
| TCTCGCAATTCATCAGTTAT+TGG | - | chr8.3:51745524-51745543 | None:intergenic | 35.0% | |
| TCTTCATTATTGCTTGGACT+AGG | - | chr8.3:51746999-51747018 | None:intergenic | 35.0% | |
| TGAAAAATGGAGACAATGGA+AGG | + | chr8.3:51745565-51745584 | MS.gene36137:CDS | 35.0% | |
| TGATAGAGTTAAGACTATGG+AGG | + | chr8.3:51746631-51746650 | MS.gene36137:CDS | 35.0% | |
| ! | TTCATTATTGCTTGGACTAG+GGG | - | chr8.3:51746997-51747016 | None:intergenic | 35.0% |
| !! | GAAAAGGCATTAGAGTTTCT+TGG | - | chr8.3:51746374-51746393 | None:intergenic | 35.0% |
| !!! | GATTTTTTGTCCCCATACAA+TGG | - | chr8.3:51745852-51745871 | None:intergenic | 35.0% |
| AAACTCGCACACGTAAAGAT+GGG | + | chr8.3:51746020-51746039 | MS.gene36137:CDS | 40.0% | |
| AACAATACTCTACTCACTCC+TGG | - | chr8.3:51746224-51746243 | None:intergenic | 40.0% | |
| AATTCGTTGAATTTCGCACG+TGG | + | chr8.3:51746859-51746878 | MS.gene36137:intron | 40.0% | |
| ACGAAATCGTGCCAAGTATT+AGG | + | chr8.3:51745822-51745841 | MS.gene36137:intron | 40.0% | |
| AGCGATGCTGAAACAAATAG+AGG | + | chr8.3:51745390-51745409 | MS.gene36137:CDS | 40.0% | |
| AGTGAGATTCTACAGACTCA+TGG | - | chr8.3:51745018-51745037 | None:intergenic | 40.0% | |
| ATTCAGGTGCAAGGAAGTAA+TGG | + | chr8.3:51744950-51744969 | MS.gene36137:intron | 40.0% | |
| ATTGACGAAGCTCAATATCG+TGG | + | chr8.3:51745667-51745686 | MS.gene36137:intron | 40.0% | |
| CGCAATTCATCAGTTATTGG+AGG | - | chr8.3:51745521-51745540 | None:intergenic | 40.0% | |
| GAAGAAGAACGTATTGTCGA+AGG | + | chr8.3:51745064-51745083 | MS.gene36137:CDS | 40.0% | |
| GATAACTATGGACGACCAAT+TGG | + | chr8.3:51745259-51745278 | MS.gene36137:CDS | 40.0% | |
| GATAATACAAGCTGCTAGAC+AGG | + | chr8.3:51746715-51746734 | MS.gene36137:CDS | 40.0% | |
| GCGTGATAGAGTTAAGACTA+TGG | + | chr8.3:51746628-51746647 | MS.gene36137:CDS | 40.0% | |
| TCTTCAGCTTCTATGTCAGA+AGG | - | chr8.3:51745046-51745065 | None:intergenic | 40.0% | |
| TGAAGATGAGGAGGCTAATA+TGG | + | chr8.3:51747141-51747160 | MS.gene36137:CDS | 40.0% | |
| TGCTTTAGCATGTTAGCAAC+AGG | + | chr8.3:51746274-51746293 | MS.gene36137:intron | 40.0% | |
| TTCCTTGCACCTGAATTTGT+GGG | - | chr8.3:51744946-51744965 | None:intergenic | 40.0% | |
| TTGACGAAGCTCAATATCGT+GGG | + | chr8.3:51745668-51745687 | MS.gene36137:intron | 40.0% | |
| TTGGTGAGATATGGAAAACC+AGG | + | chr8.3:51746203-51746222 | MS.gene36137:intron | 40.0% | |
| ! | TTGGACTAGGGGAATTCAAA+GGG | - | chr8.3:51746986-51747005 | None:intergenic | 40.0% |
| !! | ATCGTGGGTTGGTTGAATAT+TGG | + | chr8.3:51745683-51745702 | MS.gene36137:CDS | 40.0% |
| AAGGGTGATTTAAAGGCAGC+TGG | + | chr8.3:51745584-51745603 | MS.gene36137:CDS | 45.0% | |
| ACAAGCAGGGTTCTATGTCT+TGG | + | chr8.3:51746489-51746508 | MS.gene36137:CDS | 45.0% | |
| CAGTCCATTCCCACAAATTC+AGG | + | chr8.3:51744934-51744953 | MS.gene36137:intron | 45.0% | |
| CCTAAGAAACGGGTAAAAGC+CGG | - | chr8.3:51745295-51745314 | None:intergenic | 45.0% | |
| CTAGGGGAATTCAAAGGGTT+AGG | - | chr8.3:51746981-51747000 | None:intergenic | 45.0% | |
| CTTCCTTGCACCTGAATTTG+TGG | - | chr8.3:51744947-51744966 | None:intergenic | 45.0% | |
| GAAACTCGCACACGTAAAGA+TGG | + | chr8.3:51746019-51746038 | MS.gene36137:CDS | 45.0% | |
| GGAAGTAATGGTGCAGAAAC+TGG | + | chr8.3:51744962-51744981 | MS.gene36137:intron | 45.0% | |
| GTAGAACCTAAACGACGTAG+AGG | + | chr8.3:51745178-51745197 | MS.gene36137:intron | 45.0% | |
| GTTGGCAATCAGGCATGAAA+AGG | - | chr8.3:51746390-51746409 | None:intergenic | 45.0% | |
| TACAAGGAGCTGCAAAGAAG+TGG | + | chr8.3:51746534-51746553 | MS.gene36137:intron | 45.0% | |
| TCTTGTAGGTGAAGATGAGG+AGG | + | chr8.3:51747132-51747151 | MS.gene36137:intron | 45.0% | |
| TGCACCTGAATTTGTGGGAA+TGG | - | chr8.3:51744941-51744960 | None:intergenic | 45.0% | |
| TTCCCACAAATTCAGGTGCA+AGG | + | chr8.3:51744941-51744960 | MS.gene36137:intron | 45.0% | |
| TTGCACTCGCTTTCTGCAAT+TGG | - | chr8.3:51745795-51745814 | None:intergenic | 45.0% | |
| ! | AATGGTGCAGAAACTGGTTC+TGG | + | chr8.3:51744968-51744987 | MS.gene36137:CDS | 45.0% |
| ! | CTTGGACTAGGGGAATTCAA+AGG | - | chr8.3:51746987-51747006 | None:intergenic | 45.0% |
| AAGGGAAAAGGAGTGATGCC+TGG | + | chr8.3:51745977-51745996 | MS.gene36137:CDS | 50.0% | |
| AAGTGGCGCGTGTGATGTAT+GGG | + | chr8.3:51746551-51746570 | MS.gene36137:intron | 50.0% | |
| CGAAGCTCAATATCGTGGGT+TGG | + | chr8.3:51745672-51745691 | MS.gene36137:intron | 50.0% | |
| GCAGGGTTCTATGTCTTGGA+AGG | + | chr8.3:51746493-51746512 | MS.gene36137:CDS | 50.0% | |
| GTTGGACCTCTACGTCGTTT+AGG | - | chr8.3:51745187-51745206 | None:intergenic | 50.0% | |
| TCGTTGAATTTCGCACGTGG+TGG | + | chr8.3:51746862-51746881 | MS.gene36137:intron | 50.0% | |
| ! | CCGGCTTTTACCCGTTTCTT+AGG | + | chr8.3:51745292-51745311 | MS.gene36137:CDS | 50.0% |
| !! | ACCAATTGGTGACGAAGGAC+CGG | + | chr8.3:51745273-51745292 | MS.gene36137:CDS | 50.0% |
| GAAGTGGCGCGTGTGATGTA+TGG | + | chr8.3:51746550-51746569 | MS.gene36137:intron | 55.0% | |
| !! | GGACGACCAATTGGTGACGA+AGG | + | chr8.3:51745268-51745287 | MS.gene36137:CDS | 55.0% |
| GCCGGTCCTTCGTCACCAAT+TGG | - | chr8.3:51745277-51745296 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 51744870 | 51747171 | 51744870 | ID=MS.gene36137 |
| chr8.3 | mRNA | 51744870 | 51747171 | 51744870 | ID=MS.gene36137.t1;Parent=MS.gene36137 |
| chr8.3 | exon | 51744870 | 51744935 | 51744870 | ID=MS.gene36137.t1.exon1;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51744870 | 51744935 | 51744870 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51744967 | 51745085 | 51744967 | ID=MS.gene36137.t1.exon2;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51744967 | 51745085 | 51744967 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51745182 | 51745411 | 51745182 | ID=MS.gene36137.t1.exon3;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51745182 | 51745411 | 51745182 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51745500 | 51745617 | 51745500 | ID=MS.gene36137.t1.exon4;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51745500 | 51745617 | 51745500 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51745677 | 51745723 | 51745677 | ID=MS.gene36137.t1.exon5;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51745677 | 51745723 | 51745677 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51745844 | 51745894 | 51745844 | ID=MS.gene36137.t1.exon6;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51745844 | 51745894 | 51745844 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51745971 | 51746075 | 51745971 | ID=MS.gene36137.t1.exon7;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51745971 | 51746075 | 51745971 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51746437 | 51746532 | 51746437 | ID=MS.gene36137.t1.exon8;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51746437 | 51746532 | 51746437 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51746578 | 51746736 | 51746578 | ID=MS.gene36137.t1.exon9;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51746578 | 51746736 | 51746578 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51746957 | 51747029 | 51746957 | ID=MS.gene36137.t1.exon10;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51746957 | 51747029 | 51746957 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| chr8.3 | exon | 51747140 | 51747171 | 51747140 | ID=MS.gene36137.t1.exon11;Parent=MS.gene36137.t1 |
| chr8.3 | CDS | 51747140 | 51747171 | 51747140 | ID=cds.MS.gene36137.t1;Parent=MS.gene36137.t1 |
| Gene Sequence |
| Protein sequence |
