Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060134.t1 | XP_027192880.1 | 47.3 | 395 | 181 | 6 | 3 | 375 | 190 | 579 | 2.90E-81 | 312.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060134.t1 | Q9C9C0 | 43.7 | 394 | 197 | 5 | 3 | 375 | 218 | 607 | 4.1e-76 | 286.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060134.t1 | A0A3Q7YGV1 | 47.3 | 395 | 181 | 6 | 3 | 375 | 190 | 579 | 2.1e-81 | 312.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052239 | MS.gene060134 | -0.801579 | 8.43E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene060134 | 0.832409 | 9.61E-56 | -1.69E-46 |
| MS.gene05329 | MS.gene060134 | 0.812169 | 4.85E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene060134 | 0.811898 | 5.56E-51 | -1.69E-46 |
| MS.gene060134 | MS.gene060135 | 0.979032 | 4.36E-147 | -1.69E-46 |
| MS.gene060134 | MS.gene060332 | 0.859713 | 3.42E-63 | -1.69E-46 |
| MS.gene060134 | MS.gene060373 | 0.8101 | 1.36E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene067932 | 0.806471 | 8.09E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene069743 | 0.825407 | 4.77E-54 | -1.69E-46 |
| MS.gene060134 | MS.gene069956 | 0.821125 | 4.77E-53 | -1.69E-46 |
| MS.gene060134 | MS.gene072929 | 0.808268 | 3.37E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene20252 | 0.804575 | 2.02E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene21334 | 0.806905 | 6.55E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene24518 | 0.82023 | 7.66E-53 | -1.69E-46 |
| MS.gene060134 | MS.gene30828 | 0.821394 | 4.13E-53 | -1.69E-46 |
| MS.gene060134 | MS.gene31306 | 0.803157 | 3.99E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene32601 | 0.803892 | 2.81E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene36137 | 0.804767 | 1.84E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene37028 | 0.806977 | 6.33E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene38659 | 0.802192 | 6.31E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene41990 | 0.814186 | 1.75E-51 | -1.69E-46 |
| MS.gene060134 | MS.gene42142 | 0.804023 | 2.64E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene43970 | 0.803409 | 3.54E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene44316 | 0.823704 | 1.20E-53 | -1.69E-46 |
| MS.gene060134 | MS.gene47834 | 0.814751 | 1.31E-51 | -1.69E-46 |
| MS.gene060134 | MS.gene49642 | 0.826553 | 2.55E-54 | -1.69E-46 |
| MS.gene060134 | MS.gene50323 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene50493 | 0.813579 | 2.38E-51 | -1.69E-46 |
| MS.gene060134 | MS.gene50865 | 0.830163 | 3.43E-55 | -1.69E-46 |
| MS.gene060134 | MS.gene53064 | 0.821426 | 4.06E-53 | -1.69E-46 |
| MS.gene060134 | MS.gene53786 | 0.817326 | 3.49E-52 | -1.69E-46 |
| MS.gene060134 | MS.gene54195 | 0.833359 | 5.58E-56 | -1.69E-46 |
| MS.gene060134 | MS.gene56889 | 0.810624 | 1.05E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene56925 | 0.812618 | 3.87E-51 | -1.69E-46 |
| MS.gene060134 | MS.gene57177 | 0.80917 | 2.16E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene57178 | 0.801063 | 1.07E-48 | -1.69E-46 |
| MS.gene060134 | MS.gene57878 | 0.804458 | 2.14E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene57879 | 0.980495 | 2.37E-150 | -1.69E-46 |
| MS.gene060134 | MS.gene57962 | 0.800548 | 1.37E-48 | -1.69E-46 |
| MS.gene060134 | MS.gene58185 | 0.805057 | 1.60E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene58222 | 0.808741 | 2.67E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene58295 | 0.848227 | 7.01E-60 | -1.69E-46 |
| MS.gene060134 | MS.gene61388 | 0.802879 | 4.55E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene61433 | 0.805293 | 1.43E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene64567 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene65003 | 0.807828 | 4.18E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene66405 | 0.821417 | 4.08E-53 | -1.69E-46 |
| MS.gene060134 | MS.gene66412 | 0.805556 | 1.26E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene66414 | 0.806585 | 7.66E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene66974 | 0.807122 | 5.90E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene70908 | 0.810914 | 9.09E-51 | -1.69E-46 |
| MS.gene060134 | MS.gene73074 | 0.831843 | 1.33E-55 | -1.69E-46 |
| MS.gene060134 | MS.gene75050 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene060134 | MS.gene75351 | 0.821113 | 4.80E-53 | -1.69E-46 |
| MS.gene060134 | MS.gene79865 | -0.839176 | 1.85E-57 | -1.69E-46 |
| MS.gene060134 | MS.gene83939 | 0.829028 | 6.47E-55 | -1.69E-46 |
| MS.gene060134 | MS.gene84994 | 0.852649 | 4.02E-61 | -1.69E-46 |
| MS.gene060134 | MS.gene89289 | 0.828778 | 7.44E-55 | -1.69E-46 |
| MS.gene060134 | MS.gene89726 | 0.805411 | 1.35E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene91008 | 0.84887 | 4.65E-60 | -1.69E-46 |
| MS.gene060134 | MS.gene93902 | 0.804055 | 2.60E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene96613 | 0.826702 | 2.35E-54 | -1.69E-46 |
| MS.gene060134 | MS.gene97625 | 0.80083 | 1.20E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAATATATGAATATTT+TGG | 0.176804 | 8.4:+4178038 | MS.gene060134:CDS |
| GCTGAGAAACTTACTATTAT+AGG | 0.182398 | 8.4:+4177981 | MS.gene060134:CDS |
| GTTTGTGGAGCCATCGATTA+TGG | 0.236591 | 8.4:+4177726 | MS.gene060134:CDS |
| GGATGGTGACAAGATTATTA+TGG | 0.245096 | 8.4:+4177596 | MS.gene060134:CDS |
| TGGATTAGCTTCAGGGTTAA+TGG | 0.250434 | 8.4:+4177575 | MS.gene060134:CDS |
| AAGATCTAATTGGCTTGATA+TGG | 0.258838 | 8.4:+4177464 | MS.gene060134:CDS |
| TACTAAGAGATCTTTGAAAA+AGG | 0.265162 | 8.4:+4177332 | MS.gene060134:CDS |
| TATTGTTGGCTGATCAATTA+TGG | 0.276033 | 8.4:+4177853 | MS.gene060134:CDS |
| ATTGTTCATTGCTGCCTTAC+CGG | 0.295628 | 8.4:-4178258 | None:intergenic |
| GAGAGTTCAACCAGATTAAT+AGG | 0.301916 | 8.4:-4178359 | None:intergenic |
| CTTACTATTATAGGTTCAAT+TGG | 0.329531 | 8.4:+4177990 | MS.gene060134:CDS |
| AGGCTAATATACCTCAAAAT+AGG | 0.333847 | 8.4:+4178336 | MS.gene060134:CDS |
| AGGTATATTAGCCTTCAATT+TGG | 0.345021 | 8.4:-4178327 | None:intergenic |
| ATAGATTGTGGATTAGCTTC+AGG | 0.355026 | 8.4:+4177567 | MS.gene060134:CDS |
| ATCGGTATTATTAGAGTTTG+TGG | 0.362941 | 8.4:+4177711 | MS.gene060134:CDS |
| ATGGGTCTCAGTAAGAGATT+TGG | 0.365012 | 8.4:+4177615 | MS.gene060134:CDS |
| TCAAAATAGGCCTATTAATC+TGG | 0.371007 | 8.4:+4178349 | MS.gene060134:CDS |
| AGATTGCCCAAGGGCGACTT+TGG | 0.388070 | 8.4:+4178234 | MS.gene060134:CDS |
| AAGAAAGAGGTTCTTTCTAA+AGG | 0.390182 | 8.4:+4178065 | MS.gene060134:CDS |
| TTGATATGGTTTCTTGTTCA+AGG | 0.394731 | 8.4:+4177478 | MS.gene060134:CDS |
| AGGATGATATAAGATCTAAT+TGG | 0.395182 | 8.4:+4177454 | MS.gene060134:CDS |
| CGATTATGGAGGTGATATAA+TGG | 0.397941 | 8.4:+4177740 | MS.gene060134:CDS |
| CTGTTGGTATATCAAATAGT+AGG | 0.400153 | 8.4:+4177682 | MS.gene060134:CDS |
| TACCGGTCCAAAGTCGCCCT+TGG | 0.405887 | 8.4:-4178241 | None:intergenic |
| GTGGGCAAATATAAAATTGC+AGG | 0.407744 | 8.4:+4177390 | MS.gene060134:CDS |
| GATGGTGACAAGATTATTAT+GGG | 0.430367 | 8.4:+4177597 | MS.gene060134:CDS |
| ATGTTCCCATTCGATAAGAT+TGG | 0.439661 | 8.4:-4177361 | None:intergenic |
| GGTGCATATTTGATTGCAAC+TGG | 0.441687 | 8.4:+4177942 | MS.gene060134:CDS |
| CTCATCTACACTTAATGATC+TGG | 0.441800 | 8.4:-4178204 | None:intergenic |
| TAGATTGTGGATTAGCTTCA+GGG | 0.444789 | 8.4:+4177568 | MS.gene060134:CDS |
| TATTTGATTGCAACTGGAGC+AGG | 0.455192 | 8.4:+4177948 | MS.gene060134:CDS |
| GTAAGGCAGCAATGAACAAT+AGG | 0.470115 | 8.4:+4178261 | MS.gene060134:CDS |
| ACCGGTCCAAAGTCGCCCTT+GGG | 0.473423 | 8.4:-4178240 | None:intergenic |
| TCCAGGAGGGAATGTATTGT+TGG | 0.487832 | 8.4:+4177839 | MS.gene060134:CDS |
| GCAGGCTTAAATTCAGATGA+AGG | 0.489639 | 8.4:+4177408 | MS.gene060134:CDS |
| TCAAATAGTAGGGAAAATAT+CGG | 0.490155 | 8.4:+4177693 | MS.gene060134:CDS |
| ATTGAGAATATCCGTAGGGT+TGG | 0.499628 | 8.4:+4177774 | MS.gene060134:CDS |
| ACTGGCTGCCTCATCTGATA+AGG | 0.501161 | 8.4:-4177919 | None:intergenic |
| TTGAGAATATCCGTAGGGTT+GGG | 0.501994 | 8.4:+4177775 | MS.gene060134:CDS |
| GCCCAAGGGCGACTTTGGAC+CGG | 0.519709 | 8.4:+4178239 | MS.gene060134:CDS |
| AACCTCTACGATCTCTTCTC+CGG | 0.527699 | 8.4:+4177287 | MS.gene060134:CDS |
| CATTCTTGCATCTAAGATAC+CGG | 0.530035 | 8.4:+4177887 | MS.gene060134:CDS |
| TGCAATCAAATATGCACCAC+TGG | 0.530834 | 8.4:-4177937 | None:intergenic |
| TGTTGCTATAGCCAAATTGA+AGG | 0.532127 | 8.4:+4178316 | MS.gene060134:CDS |
| CTTAAATTCAGATGAAGGAT+GGG | 0.532180 | 8.4:+4177413 | MS.gene060134:CDS |
| ATTACACCAATCTTATCGAA+TGG | 0.535345 | 8.4:+4177355 | MS.gene060134:CDS |
| GGAAATGATGAAGGCAATTG+AGG | 0.537388 | 8.4:+4177434 | MS.gene060134:CDS |
| TTACACCAATCTTATCGAAT+GGG | 0.537864 | 8.4:+4177356 | MS.gene060134:CDS |
| AGGGCGACTTTGGACCGGTA+AGG | 0.542327 | 8.4:+4178244 | MS.gene060134:CDS |
| GCTTAAATTCAGATGAAGGA+TGG | 0.545084 | 8.4:+4177412 | MS.gene060134:CDS |
| TTAGTAAGAGTAGTTGTCTC+CGG | 0.546132 | 8.4:-4177306 | None:intergenic |
| GAAGAGATCGTAGAGGTTGG+AGG | 0.546294 | 8.4:-4177282 | None:intergenic |
| GCCAACAATACATTCCCTCC+TGG | 0.546346 | 8.4:-4177840 | None:intergenic |
| TTGATGCGCTCTTCTTCATG+TGG | 0.546362 | 8.4:-4178131 | None:intergenic |
| GGAGAAGAGATCGTAGAGGT+TGG | 0.556545 | 8.4:-4177285 | None:intergenic |
| GTTTGAAGGCTATAATCCTA+CGG | 0.566827 | 8.4:+4177808 | MS.gene060134:CDS |
| TGTTGGTATATCAAATAGTA+GGG | 0.568964 | 8.4:+4177683 | MS.gene060134:CDS |
| TGAAGGATGGGAAATGATGA+AGG | 0.569473 | 8.4:+4177425 | MS.gene060134:CDS |
| GGCAGCAATGAACAATAGGT+TGG | 0.572321 | 8.4:+4178265 | MS.gene060134:CDS |
| AATAGGTTGGTTGATGCGCT+AGG | 0.587278 | 8.4:+4178278 | MS.gene060134:CDS |
| TCTGATAAGGAAGAAATGAC+CGG | 0.587654 | 8.4:-4177906 | None:intergenic |
| CAGATCATTAAGTGTAGATG+AGG | 0.588798 | 8.4:+4178205 | MS.gene060134:CDS |
| CATTTCTTCCTTATCAGATG+AGG | 0.593943 | 8.4:+4177911 | MS.gene060134:CDS |
| TTAGCTTCAGGGTTAATGGA+TGG | 0.600853 | 8.4:+4177579 | MS.gene060134:CDS |
| ATCCTACGGATTGACAGTCC+AGG | 0.601328 | 8.4:+4177822 | MS.gene060134:CDS |
| TTTGATTGAGAATATCCGTA+GGG | 0.609950 | 8.4:+4177770 | MS.gene060134:CDS |
| TATATCACCTCCATAATCGA+TGG | 0.612527 | 8.4:-4177736 | None:intergenic |
| GAGGTTGAAGAGATTGCCCA+AGG | 0.622061 | 8.4:+4178224 | MS.gene060134:CDS |
| CTCCTGGACTGTCAATCCGT+AGG | 0.622715 | 8.4:-4177824 | None:intergenic |
| CTTTGTAGACAAGGTAGCGA+TGG | 0.623654 | 8.4:+4178181 | MS.gene060134:CDS |
| AACTATTTGAGAATGATCAT+CGG | 0.625097 | 8.4:+4178099 | MS.gene060134:CDS |
| GAATGGGAACATAAGACAGT+GGG | 0.628199 | 8.4:+4177372 | MS.gene060134:CDS |
| ATTTGATTGAGAATATCCGT+AGG | 0.630652 | 8.4:+4177769 | MS.gene060134:CDS |
| TTACAAACACTTTGTAGACA+AGG | 0.630675 | 8.4:+4178172 | MS.gene060134:CDS |
| AGGTTGGTTGATGCGCTAGG+TGG | 0.658606 | 8.4:+4178281 | MS.gene060134:CDS |
| TGTGGAGCCATCGATTATGG+AGG | 0.660667 | 8.4:+4177729 | MS.gene060134:CDS |
| TACGGATTGACAGTCCAGGA+GGG | 0.661634 | 8.4:+4177826 | MS.gene060134:CDS |
| TTATCAGATGAGGCAGCCAG+TGG | 0.663360 | 8.4:+4177921 | MS.gene060134:CDS |
| CTACGGATTGACAGTCCAGG+AGG | 0.672726 | 8.4:+4177825 | MS.gene060134:CDS |
| AGGTTGAAGAGATTGCCCAA+GGG | 0.677412 | 8.4:+4178225 | MS.gene060134:CDS |
| CGAATGGGAACATAAGACAG+TGG | 0.682407 | 8.4:+4177371 | MS.gene060134:CDS |
| CTCCGGAGAAGAGATCGTAG+AGG | 0.751065 | 8.4:-4177289 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAATATATGAATATTT+TGG | + | chr8.4:4178038-4178057 | MS.gene060134:CDS | 10.0% |
| !!! | ATTTTCATGAAACAAAAAAT+TGG | + | chr8.4:4177544-4177563 | MS.gene060134:CDS | 15.0% |
| !! | TTCAAGGAAAATATCAAAAA+AGG | + | chr8.4:4177494-4177513 | MS.gene060134:CDS | 20.0% |
| !!! | ATATTTTGGTTTTAAGAAAG+AGG | + | chr8.4:4178052-4178071 | MS.gene060134:CDS | 20.0% |
| ! | AACTATTTGAGAATGATCAT+CGG | + | chr8.4:4178099-4178118 | MS.gene060134:CDS | 25.0% |
| ! | ACAAAAAATTGGATAGATTG+TGG | + | chr8.4:4177555-4177574 | MS.gene060134:CDS | 25.0% |
| ! | AGGATGATATAAGATCTAAT+TGG | + | chr8.4:4177454-4177473 | MS.gene060134:CDS | 25.0% |
| ! | CTTACTATTATAGGTTCAAT+TGG | + | chr8.4:4177990-4178009 | MS.gene060134:CDS | 25.0% |
| ! | TCAAATAGTAGGGAAAATAT+CGG | + | chr8.4:4177693-4177712 | MS.gene060134:CDS | 25.0% |
| ! | TGTTGGTATATCAAATAGTA+GGG | + | chr8.4:4177683-4177702 | MS.gene060134:CDS | 25.0% |
| !! | TACTAAGAGATCTTTGAAAA+AGG | + | chr8.4:4177332-4177351 | MS.gene060134:CDS | 25.0% |
| AAGAAAGAGGTTCTTTCTAA+AGG | + | chr8.4:4178065-4178084 | MS.gene060134:CDS | 30.0% | |
| AGGCTAATATACCTCAAAAT+AGG | + | chr8.4:4178336-4178355 | MS.gene060134:CDS | 30.0% | |
| ATCGGTATTATTAGAGTTTG+TGG | + | chr8.4:4177711-4177730 | MS.gene060134:CDS | 30.0% | |
| ATTACACCAATCTTATCGAA+TGG | + | chr8.4:4177355-4177374 | MS.gene060134:CDS | 30.0% | |
| ATTTGATTGAGAATATCCGT+AGG | + | chr8.4:4177769-4177788 | MS.gene060134:CDS | 30.0% | |
| CTGTTGGTATATCAAATAGT+AGG | + | chr8.4:4177682-4177701 | MS.gene060134:CDS | 30.0% | |
| CTTAAATTCAGATGAAGGAT+GGG | + | chr8.4:4177413-4177432 | MS.gene060134:CDS | 30.0% | |
| GATGGTGACAAGATTATTAT+GGG | + | chr8.4:4177597-4177616 | MS.gene060134:CDS | 30.0% | |
| GCTGAGAAACTTACTATTAT+AGG | + | chr8.4:4177981-4178000 | MS.gene060134:CDS | 30.0% | |
| TCAAAATAGGCCTATTAATC+TGG | + | chr8.4:4178349-4178368 | MS.gene060134:CDS | 30.0% | |
| TTACAAACACTTTGTAGACA+AGG | + | chr8.4:4178172-4178191 | MS.gene060134:CDS | 30.0% | |
| TTACACCAATCTTATCGAAT+GGG | + | chr8.4:4177356-4177375 | MS.gene060134:CDS | 30.0% | |
| TTGATATGGTTTCTTGTTCA+AGG | + | chr8.4:4177478-4177497 | MS.gene060134:CDS | 30.0% | |
| TTTGATTGAGAATATCCGTA+GGG | + | chr8.4:4177770-4177789 | MS.gene060134:CDS | 30.0% | |
| ! | AGATTAATAGGCCTATTTTG+AGG | - | chr8.4:4178350-4178369 | None:intergenic | 30.0% |
| ! | TATTGTTGGCTGATCAATTA+TGG | + | chr8.4:4177853-4177872 | MS.gene060134:CDS | 30.0% |
| !! | AAGATCTAATTGGCTTGATA+TGG | + | chr8.4:4177464-4177483 | MS.gene060134:CDS | 30.0% |
| !! | AGGTATATTAGCCTTCAATT+TGG | - | chr8.4:4178330-4178349 | None:intergenic | 30.0% |
| !!! | AAGGACCTTCTAACTTTTTT+CGG | + | chr8.4:4177513-4177532 | MS.gene060134:CDS | 30.0% |
| !!! | GAATATATTTTGAAGTCGAG+CGG | - | chr8.4:4177645-4177664 | None:intergenic | 30.0% |
| ATGTTCCCATTCGATAAGAT+TGG | - | chr8.4:4177364-4177383 | None:intergenic | 35.0% | |
| CACTACCGAAAAAAGTTAGA+AGG | - | chr8.4:4177521-4177540 | None:intergenic | 35.0% | |
| CAGATCATTAAGTGTAGATG+AGG | + | chr8.4:4178205-4178224 | MS.gene060134:CDS | 35.0% | |
| CATTTCTTCCTTATCAGATG+AGG | + | chr8.4:4177911-4177930 | MS.gene060134:CDS | 35.0% | |
| CGATTATGGAGGTGATATAA+TGG | + | chr8.4:4177740-4177759 | MS.gene060134:CDS | 35.0% | |
| CTCATCTACACTTAATGATC+TGG | - | chr8.4:4178207-4178226 | None:intergenic | 35.0% | |
| GAGAGTTCAACCAGATTAAT+AGG | - | chr8.4:4178362-4178381 | None:intergenic | 35.0% | |
| GCTTAAATTCAGATGAAGGA+TGG | + | chr8.4:4177412-4177431 | MS.gene060134:CDS | 35.0% | |
| GGATGGTGACAAGATTATTA+TGG | + | chr8.4:4177596-4177615 | MS.gene060134:CDS | 35.0% | |
| GTGGGCAAATATAAAATTGC+AGG | + | chr8.4:4177390-4177409 | MS.gene060134:CDS | 35.0% | |
| GTTTGAAGGCTATAATCCTA+CGG | + | chr8.4:4177808-4177827 | MS.gene060134:CDS | 35.0% | |
| TATATCACCTCCATAATCGA+TGG | - | chr8.4:4177739-4177758 | None:intergenic | 35.0% | |
| TCTGATAAGGAAGAAATGAC+CGG | - | chr8.4:4177909-4177928 | None:intergenic | 35.0% | |
| TGGGTCATCAAAAAGTTTGA+AGG | + | chr8.4:4177794-4177813 | MS.gene060134:CDS | 35.0% | |
| TGTTGCTATAGCCAAATTGA+AGG | + | chr8.4:4178316-4178335 | MS.gene060134:CDS | 35.0% | |
| TTAGTAAGAGTAGTTGTCTC+CGG | - | chr8.4:4177309-4177328 | None:intergenic | 35.0% | |
| ! | CAAGTTAAAAAGTGCACTGT+TGG | + | chr8.4:4177666-4177685 | MS.gene060134:CDS | 35.0% |
| ! | CATTCTTGCATCTAAGATAC+CGG | + | chr8.4:4177887-4177906 | MS.gene060134:CDS | 35.0% |
| !! | ATAGATTGTGGATTAGCTTC+AGG | + | chr8.4:4177567-4177586 | MS.gene060134:CDS | 35.0% |
| !! | TAGATTGTGGATTAGCTTCA+GGG | + | chr8.4:4177568-4177587 | MS.gene060134:CDS | 35.0% |
| !!! | TCTAACTTTTTTCGGTAGTG+AGG | + | chr8.4:4177521-4177540 | MS.gene060134:CDS | 35.0% |
| ATGGGTCTCAGTAAGAGATT+TGG | + | chr8.4:4177615-4177634 | MS.gene060134:CDS | 40.0% | |
| ATTGAGAATATCCGTAGGGT+TGG | + | chr8.4:4177774-4177793 | MS.gene060134:CDS | 40.0% | |
| ATTGTTCATTGCTGCCTTAC+CGG | - | chr8.4:4178261-4178280 | None:intergenic | 40.0% | |
| GAATGGGAACATAAGACAGT+GGG | + | chr8.4:4177372-4177391 | MS.gene060134:CDS | 40.0% | |
| GCAGGCTTAAATTCAGATGA+AGG | + | chr8.4:4177408-4177427 | MS.gene060134:CDS | 40.0% | |
| GGAAATGATGAAGGCAATTG+AGG | + | chr8.4:4177434-4177453 | MS.gene060134:CDS | 40.0% | |
| GGTGCATATTTGATTGCAAC+TGG | + | chr8.4:4177942-4177961 | MS.gene060134:CDS | 40.0% | |
| GTAAGGCAGCAATGAACAAT+AGG | + | chr8.4:4178261-4178280 | MS.gene060134:CDS | 40.0% | |
| TATTTGATTGCAACTGGAGC+AGG | + | chr8.4:4177948-4177967 | MS.gene060134:CDS | 40.0% | |
| TGAAGGATGGGAAATGATGA+AGG | + | chr8.4:4177425-4177444 | MS.gene060134:CDS | 40.0% | |
| TGCAATCAAATATGCACCAC+TGG | - | chr8.4:4177940-4177959 | None:intergenic | 40.0% | |
| TTAGCTTCAGGGTTAATGGA+TGG | + | chr8.4:4177579-4177598 | MS.gene060134:CDS | 40.0% | |
| TTGAGAATATCCGTAGGGTT+GGG | + | chr8.4:4177775-4177794 | MS.gene060134:CDS | 40.0% | |
| !! | TGGATTAGCTTCAGGGTTAA+TGG | + | chr8.4:4177575-4177594 | MS.gene060134:CDS | 40.0% |
| !! | TTTTTGATGACCCAACCCTA+CGG | - | chr8.4:4177788-4177807 | None:intergenic | 40.0% |
| !!! | TATATTTTGAAGTCGAGCGG+TGG | - | chr8.4:4177642-4177661 | None:intergenic | 40.0% |
| AACCTCTACGATCTCTTCTC+CGG | + | chr8.4:4177287-4177306 | MS.gene060134:CDS | 45.0% | |
| AGGTTGAAGAGATTGCCCAA+GGG | + | chr8.4:4178225-4178244 | MS.gene060134:CDS | 45.0% | |
| CGAATGGGAACATAAGACAG+TGG | + | chr8.4:4177371-4177390 | MS.gene060134:CDS | 45.0% | |
| CTTTGTAGACAAGGTAGCGA+TGG | + | chr8.4:4178181-4178200 | MS.gene060134:CDS | 45.0% | |
| GGCAGCAATGAACAATAGGT+TGG | + | chr8.4:4178265-4178284 | MS.gene060134:CDS | 45.0% | |
| TCCAGGAGGGAATGTATTGT+TGG | + | chr8.4:4177839-4177858 | MS.gene060134:CDS | 45.0% | |
| TTGATGCGCTCTTCTTCATG+TGG | - | chr8.4:4178134-4178153 | None:intergenic | 45.0% | |
| ! | GTTTGTGGAGCCATCGATTA+TGG | + | chr8.4:4177726-4177745 | MS.gene060134:CDS | 45.0% |
| !! | AATAGGTTGGTTGATGCGCT+AGG | + | chr8.4:4178278-4178297 | MS.gene060134:CDS | 45.0% |
| ACTGGCTGCCTCATCTGATA+AGG | - | chr8.4:4177922-4177941 | None:intergenic | 50.0% | |
| GAAGAGATCGTAGAGGTTGG+AGG | - | chr8.4:4177285-4177304 | None:intergenic | 50.0% | |
| GAGGTTGAAGAGATTGCCCA+AGG | + | chr8.4:4178224-4178243 | MS.gene060134:CDS | 50.0% | |
| GCCAACAATACATTCCCTCC+TGG | - | chr8.4:4177843-4177862 | None:intergenic | 50.0% | |
| GGAGAAGAGATCGTAGAGGT+TGG | - | chr8.4:4177288-4177307 | None:intergenic | 50.0% | |
| TTATCAGATGAGGCAGCCAG+TGG | + | chr8.4:4177921-4177940 | MS.gene060134:CDS | 50.0% | |
| ! | ATCCTACGGATTGACAGTCC+AGG | + | chr8.4:4177822-4177841 | MS.gene060134:CDS | 50.0% |
| ! | TACGGATTGACAGTCCAGGA+GGG | + | chr8.4:4177826-4177845 | MS.gene060134:CDS | 50.0% |
| ! | TGTGGAGCCATCGATTATGG+AGG | + | chr8.4:4177729-4177748 | MS.gene060134:CDS | 50.0% |
| AGATTGCCCAAGGGCGACTT+TGG | + | chr8.4:4178234-4178253 | MS.gene060134:CDS | 55.0% | |
| CTCCGGAGAAGAGATCGTAG+AGG | - | chr8.4:4177292-4177311 | None:intergenic | 55.0% | |
| CTCCTGGACTGTCAATCCGT+AGG | - | chr8.4:4177827-4177846 | None:intergenic | 55.0% | |
| ! | AGGTTGGTTGATGCGCTAGG+TGG | + | chr8.4:4178281-4178300 | MS.gene060134:CDS | 55.0% |
| ! | CTACGGATTGACAGTCCAGG+AGG | + | chr8.4:4177825-4177844 | MS.gene060134:CDS | 55.0% |
| ACCGGTCCAAAGTCGCCCTT+GGG | - | chr8.4:4178243-4178262 | None:intergenic | 60.0% | |
| AGGGCGACTTTGGACCGGTA+AGG | + | chr8.4:4178244-4178263 | MS.gene060134:CDS | 60.0% | |
| TACCGGTCCAAAGTCGCCCT+TGG | - | chr8.4:4178244-4178263 | None:intergenic | 60.0% | |
| GCCCAAGGGCGACTTTGGAC+CGG | + | chr8.4:4178239-4178258 | MS.gene060134:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 4177256 | 4178388 | 4177256 | ID=MS.gene060134 |
| chr8.4 | mRNA | 4177256 | 4178388 | 4177256 | ID=MS.gene060134.t1;Parent=MS.gene060134 |
| chr8.4 | exon | 4177256 | 4178388 | 4177256 | ID=MS.gene060134.t1.exon1;Parent=MS.gene060134.t1 |
| chr8.4 | CDS | 4177256 | 4178388 | 4177256 | ID=cds.MS.gene060134.t1;Parent=MS.gene060134.t1 |
| Gene Sequence |
| Protein sequence |
