AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36246

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36246.t1 MTR_2g103170 99.007 302 3 0 1 302 72 373 0.0 620
MS.gene36246.t1 MTR_1g011800 69.128 298 87 1 1 298 84 376 1.70e-155 439
MS.gene36246.t1 MTR_0045s0110 52.759 290 131 2 1 290 78 361 1.55e-106 315
MS.gene36246.t1 MTR_4g039740 52.069 290 133 2 1 290 78 361 1.08e-102 305
MS.gene36246.t1 MTR_4g039720 51.379 290 135 2 1 290 82 365 2.60e-102 304
MS.gene36246.t1 MTR_4g039680 49.655 290 140 2 1 290 78 361 7.57e-99 295
MS.gene36246.t1 MTR_2g019600 47.260 292 149 1 1 292 79 365 1.31e-95 288
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36246.t1 AT5G11420 66.779 298 94 1 1 298 74 366 1.27e-150 427
MS.gene36246.t1 AT5G25460 67.785 298 91 1 1 298 77 369 6.86e-150 425
MS.gene36246.t1 AT4G32460 67.450 298 92 1 1 298 33 325 1.82e-149 422
MS.gene36246.t1 AT4G32460 67.450 298 92 1 1 298 33 325 1.82e-149 422
MS.gene36246.t1 AT4G32460 67.450 298 92 1 1 298 73 365 1.97e-148 421
MS.gene36246.t1 AT4G32460 67.450 298 92 1 1 298 73 365 1.97e-148 421
MS.gene36246.t1 AT1G80240 66.780 295 93 1 1 295 76 365 1.70e-142 406
MS.gene36246.t1 AT3G08030 54.483 290 127 1 1 290 33 317 1.86e-106 313
MS.gene36246.t1 AT3G08030 54.483 290 127 1 1 290 75 359 8.50e-106 313
MS.gene36246.t1 AT2G41800 52.055 292 135 1 5 296 84 370 1.51e-102 305
MS.gene36246.t1 AT2G41810 50.859 291 138 1 3 293 82 367 1.21e-101 302
MS.gene36246.t1 AT2G34510 47.945 292 152 0 1 292 1 292 1.13e-98 293
MS.gene36246.t1 AT2G34510 47.945 292 152 0 1 292 87 378 2.26e-97 293
MS.gene36246.t1 AT1G29980 44.595 296 160 1 1 292 51 346 3.48e-94 283
MS.gene36246.t1 AT1G29980 44.595 296 160 1 1 292 87 382 1.27e-93 283
MS.gene36246.t1 AT5G14150 33.993 303 174 11 5 292 66 357 9.09e-38 138
MS.gene36246.t1 AT5G14150 33.993 303 174 11 5 292 66 357 9.09e-38 138

Find 70 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTTCCTTATCAATCTA+AGG 0.227907 2.1:-2549535 MS.gene36246:CDS
TGGATAACAATTTCCCCTTC+TGG 0.270997 2.1:+2550752 None:intergenic
AAATTACCTCTGGTTCTTCT+AGG 0.274083 2.1:+2550656 None:intergenic
TATTGATTCTGTTGCCTTGA+AGG 0.280632 2.1:-2550690 MS.gene36246:CDS
CAAAAGGTGAAATTAAATAA+AGG 0.320615 2.1:-2550947 MS.gene36246:CDS
AAAACAAGGTGACATGCTTT+TGG 0.342997 2.1:-2551023 None:intergenic
ACTTCTGAGAAAAGAGATTA+TGG 0.344578 2.1:-2550848 MS.gene36246:CDS
CAAGAAGTCTTCACCACAAT+TGG 0.356227 2.1:-2549651 MS.gene36246:CDS
AATACTCCCCATGATGCATT+TGG 0.357606 2.1:+2549828 None:intergenic
ACCAGAGTTATCATTCTTCA+TGG 0.360617 2.1:+2549428 None:intergenic
ATTACTTAGGTATGCTTGTT+GGG 0.366782 2.1:+2549354 None:intergenic
CATTACTTAGGTATGCTTGT+TGG 0.371408 2.1:+2549353 None:intergenic
GATAACTCTGGTTCTCTTTG+TGG 0.379593 2.1:-2549417 MS.gene36246:CDS
GGCAAAGGAGGGTTTGTTAG+AGG 0.380600 2.1:-2549513 MS.gene36246:CDS
CATCTTCAACACCAGAGTTA+TGG 0.410007 2.1:+2550732 None:intergenic
CTAACAGCATAAGCACCTTC+TGG 0.410744 2.1:+2550995 None:intergenic
AAAAGGTGAAATTAAATAAA+GGG 0.413489 2.1:-2550946 MS.gene36246:CDS
CAGAAGGTGCTTATGCTGTT+AGG 0.416893 2.1:-2550994 MS.gene36246:CDS
GTTGGGAATCATTTGCTTGT+GGG 0.420479 2.1:-2550790 MS.gene36246:CDS
CTACCATACATAGTCTGTAT+TGG 0.420768 2.1:+2550818 None:intergenic
CGACAAGACGTACTAGGATT+AGG 0.425557 2.1:-2549470 MS.gene36246:CDS
TCATGGTGTAAAATGTACTT+AGG 0.454825 2.1:+2549445 None:intergenic
GATGCATTTGGGAACACATA+TGG 0.455308 2.1:+2549840 None:intergenic
AGGCTACGACAAGACGTACT+AGG 0.457315 2.1:-2549476 MS.gene36246:CDS
TCAACTATCCATCCTGGTAA+TGG 0.458492 2.1:+2549774 None:intergenic
ATACTCCCCATGATGCATTT+GGG 0.460441 2.1:+2549829 None:intergenic
ATGACTGTAGAAGCATTTGC+TGG 0.463295 2.1:-2549570 MS.gene36246:CDS
CCTTTGCCCTTAGATTGATA+AGG 0.464510 2.1:+2549528 None:intergenic
TACCTCTGGTTCTTCTAGGT+GGG 0.470065 2.1:+2550660 None:intergenic
AGAGCAATTGAACTTGTAGC+AGG 0.483311 2.1:-2549693 MS.gene36246:CDS
TGAAGCATACATTAAACAAA+AGG 0.487173 2.1:-2550963 MS.gene36246:CDS
GATGCTCATGGTCCATTACC+AGG 0.489743 2.1:-2549786 MS.gene36246:CDS
TCAATAAGTGGGCCACAAGC+TGG 0.490288 2.1:+2550707 None:intergenic
ATGTGTTCCCAAATGCATCA+TGG 0.495027 2.1:-2549836 MS.gene36246:CDS
ATTCCAATACAGACTATGTA+TGG 0.495208 2.1:-2550821 MS.gene36246:CDS
AGGTGGGTTCAAAACCTTCA+AGG 0.507765 2.1:+2550676 None:intergenic
GGTTGGGAATCATTTGCTTG+TGG 0.513196 2.1:-2550791 MS.gene36246:CDS
TATGTATGGTAGCAATGGTT+GGG 0.515899 2.1:-2550807 MS.gene36246:CDS
TGTGTTCCCAAATGCATCAT+GGG 0.517111 2.1:-2549835 MS.gene36246:CDS
CAAGTTCCTTATCAATCTAA+GGG 0.522342 2.1:-2549534 MS.gene36246:CDS
TTACCTCTGGTTCTTCTAGG+TGG 0.537982 2.1:+2550659 None:intergenic
AGAGATTCAACTATCCATCC+TGG 0.540762 2.1:+2549768 None:intergenic
CTATGTATGGTAGCAATGGT+TGG 0.542393 2.1:-2550808 MS.gene36246:CDS
GAAATTGTTATCCATAACTC+TGG 0.550258 2.1:-2550743 MS.gene36246:CDS
AAGGCAACAGAATCAATAAG+TGG 0.552750 2.1:+2550695 None:intergenic
TATCAATCTAAGGGCAAAGG+AGG 0.558454 2.1:-2549525 MS.gene36246:CDS
TTTAGAGCTGATTATCCAGA+AGG 0.574156 2.1:-2550767 MS.gene36246:CDS
CCTTATCAATCTAAGGGCAA+AGG 0.577087 2.1:-2549528 MS.gene36246:CDS
GGTGCTTATGCTGTTAGGCT+AGG 0.577781 2.1:-2550989 MS.gene36246:CDS
CAGACTATGTATGGTAGCAA+TGG 0.586345 2.1:-2550812 MS.gene36246:CDS
CTCATGGTCCATTACCAGGA+TGG 0.588455 2.1:-2549782 MS.gene36246:CDS
GTTGAAGATGATCCAGCTTG+TGG 0.588645 2.1:-2550719 MS.gene36246:CDS
ATTGATCCCACCACACATTG+AGG 0.605497 2.1:-2549808 MS.gene36246:CDS
TAGAGCTGATTATCCAGAAG+GGG 0.606448 2.1:-2550765 MS.gene36246:CDS
ATCAATCTAAGGGCAAAGGA+GGG 0.607832 2.1:-2549524 MS.gene36246:CDS
GAGCATCCTCAATGTGTGGT+GGG 0.618690 2.1:+2549802 None:intergenic
AGAGAAGCTTAATGTGTCAG+TGG 0.619453 2.1:-2550876 MS.gene36246:CDS
GAGCAATTGAACTTGTAGCA+GGG 0.620186 2.1:-2549692 MS.gene36246:CDS
CCACACATTGAGGATGCTCA+TGG 0.621467 2.1:-2549798 MS.gene36246:CDS
TTAGAGCTGATTATCCAGAA+GGG 0.629847 2.1:-2550766 MS.gene36246:CDS
AGGCAACAGAATCAATAAGT+GGG 0.639484 2.1:+2550696 None:intergenic
TGAGCATCCTCAATGTGTGG+TGG 0.646759 2.1:+2549801 None:intergenic
GCGAGCTGCACTGAACGTGA+TGG 0.648755 2.1:+2550913 None:intergenic
GAACACTTCACAGTACCAGA+AGG 0.657571 2.1:-2549720 MS.gene36246:CDS
CATCACCAACTGCAAAAGTG+AGG 0.664865 2.1:+2549616 None:intergenic
GATGCTAATAATGCATGTGA+AGG 0.670003 2.1:-2549597 MS.gene36246:CDS
GTGTTCCCAAATGCATCATG+GGG 0.678543 2.1:-2549834 MS.gene36246:CDS
ACCATGAAGAATGATAACTC+TGG 0.691442 2.1:-2549429 MS.gene36246:CDS
CCATGAGCATCCTCAATGTG+TGG 0.691876 2.1:+2549798 None:intergenic
AACCCACCTAGAAGAACCAG+AGG 0.693541 2.1:-2550662 MS.gene36246:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG - chr2.1:2549959-2549978 MS.gene36246:intron 10.0%
!! ATTTAGTATTATATTGTATT+GGG - chr2.1:2550024-2550043 MS.gene36246:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr2.1:2549958-2549977 MS.gene36246:intron 10.0%
!! TATTTAGTATTATATTGTAT+TGG - chr2.1:2550023-2550042 MS.gene36246:intron 10.0%
!! AAAAGGTGAAATTAAATAAA+GGG - chr2.1:2549423-2549442 MS.gene36246:CDS 15.0%
!! ACAAAAATATTCAATCATAT+TGG + chr2.1:2550352-2550371 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr2.1:2549960-2549979 MS.gene36246:intron 15.0%
!! TAGTAAAATACAATTAAACT+AGG + chr2.1:2549810-2549829 None:intergenic 15.0%
!! TTGATGTATGAAATTAAATT+TGG - chr2.1:2550433-2550452 MS.gene36246:intron 15.0%
!!! TTGAATATTTTTGTACATTA+TGG - chr2.1:2550358-2550377 MS.gene36246:intron 15.0%
!! AAAGTGGAATATATTGTATT+GGG - chr2.1:2549983-2550002 MS.gene36246:intron 20.0%
!! ATTCTTAATTTAATGCAAAG+AGG - chr2.1:2550400-2550419 MS.gene36246:intron 20.0%
!! CAAAAGGTGAAATTAAATAA+AGG - chr2.1:2549422-2549441 MS.gene36246:CDS 20.0%
!! TGTATACAAATTTAGATACA+TGG + chr2.1:2549764-2549783 None:intergenic 20.0%
!!! AACTATTGTTTTTGTTTGTT+TGG - chr2.1:2550466-2550485 MS.gene36246:intron 20.0%
!!! AATTTTACATCATCAATAAC+AGG + chr2.1:2550979-2550998 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr2.1:2550093-2550112 MS.gene36246:intron 20.0%
!!! GTTTCCATTTTTCAATAAAT+TGG + chr2.1:2550497-2550516 None:intergenic 20.0%
! ACTCCATACATGTAATTAAA+CGG - chr2.1:2550325-2550344 MS.gene36246:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr2.1:2549982-2550001 MS.gene36246:intron 25.0%
! GCATATATTTATGATGTGTT+TGG - chr2.1:2550206-2550225 MS.gene36246:intron 25.0%
! TGAAGCATACATTAAACAAA+AGG - chr2.1:2549406-2549425 MS.gene36246:CDS 25.0%
!! AAAAATGGAAACTTTGAAGA+AGG - chr2.1:2550505-2550524 MS.gene36246:intron 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr2.1:2550070-2550089 MS.gene36246:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr2.1:2550092-2550111 MS.gene36246:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr2.1:2550071-2550090 MS.gene36246:intron 25.0%
ATTCCAATACAGACTATGTA+TGG - chr2.1:2549548-2549567 MS.gene36246:CDS 30.0%
CAAGTTCCTTATCAATCTAA+GGG - chr2.1:2550835-2550854 MS.gene36246:CDS 30.0%
GAAATTGTTATCCATAACTC+TGG - chr2.1:2549626-2549645 MS.gene36246:CDS 30.0%
GCAGCCAATTTATTGAAAAA+TGG - chr2.1:2550490-2550509 MS.gene36246:intron 30.0%
TCAAGTTCCTTATCAATCTA+AGG - chr2.1:2550834-2550853 MS.gene36246:CDS 30.0%
TCATGGTGTAAAATGTACTT+AGG + chr2.1:2550927-2550946 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr2.1:2549967-2549986 MS.gene36246:intron 30.0%
TTATGATGTGTTTGGATTGA+CGG - chr2.1:2550214-2550233 MS.gene36246:intron 30.0%
! ACTTCTGAGAAAAGAGATTA+TGG - chr2.1:2549521-2549540 MS.gene36246:CDS 30.0%
! GACATAAACTTTTCCAATTG+TGG + chr2.1:2550734-2550753 None:intergenic 30.0%
! GTTAATGTGATTTTCGCAAT+TGG - chr2.1:2550260-2550279 MS.gene36246:intron 30.0%
! TAATCTCTTTTCTCAGAAGT+TGG + chr2.1:2549521-2549540 None:intergenic 30.0%
AAGGCAACAGAATCAATAAG+TGG + chr2.1:2549677-2549696 None:intergenic 35.0%
ACCAGAGTTATCATTCTTCA+TGG + chr2.1:2550944-2550963 None:intergenic 35.0%
ACCATGAAGAATGATAACTC+TGG - chr2.1:2550940-2550959 MS.gene36246:CDS 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr2.1:2550106-2550125 MS.gene36246:intron 35.0%
AGAGGTCAAATAAATTGGGA+CGG + chr2.1:2549919-2549938 None:intergenic 35.0%
AGCCAAGAGGTCAAATAAAT+TGG + chr2.1:2549924-2549943 None:intergenic 35.0%
AGGCAACAGAATCAATAAGT+GGG + chr2.1:2549676-2549695 None:intergenic 35.0%
CTACCATACATAGTCTGTAT+TGG + chr2.1:2549554-2549573 None:intergenic 35.0%
GATGCTAATAATGCATGTGA+AGG - chr2.1:2550772-2550791 MS.gene36246:CDS 35.0%
GCCAAGAGGTCAAATAAATT+GGG + chr2.1:2549923-2549942 None:intergenic 35.0%
GGACCGTTTAATTACATGTA+TGG + chr2.1:2550331-2550350 None:intergenic 35.0%
TAGGGAACAAAAATTACCTC+TGG + chr2.1:2549726-2549745 None:intergenic 35.0%
TATGTATGGTAGCAATGGTT+GGG - chr2.1:2549562-2549581 MS.gene36246:CDS 35.0%
TCCCAATTTATTTGACCTCT+TGG - chr2.1:2549919-2549938 MS.gene36246:intron 35.0%
TTAGAGCTGATTATCCAGAA+GGG - chr2.1:2549603-2549622 MS.gene36246:CDS 35.0%
! TAGAGGCAAACTTCGTTTTA+AGG - chr2.1:2550873-2550892 MS.gene36246:CDS 35.0%
! TCAATTGCTCTTTTTCCTTC+TGG + chr2.1:2550667-2550686 None:intergenic 35.0%
! TTTAGAGCTGATTATCCAGA+AGG - chr2.1:2549602-2549621 MS.gene36246:CDS 35.0%
!! AAATTACCTCTGGTTCTTCT+AGG + chr2.1:2549716-2549735 None:intergenic 35.0%
!! TATTGATTCTGTTGCCTTGA+AGG - chr2.1:2549679-2549698 MS.gene36246:CDS 35.0%
AATACTCCCCATGATGCATT+TGG + chr2.1:2550544-2550563 None:intergenic 40.0%
AGAGAAGCTTAATGTGTCAG+TGG - chr2.1:2549493-2549512 MS.gene36246:CDS 40.0%
AGAGATTCAACTATCCATCC+TGG + chr2.1:2550604-2550623 None:intergenic 40.0%
AGAGCAATTGAACTTGTAGC+AGG - chr2.1:2550676-2550695 MS.gene36246:CDS 40.0%
ATACTCCCCATGATGCATTT+GGG + chr2.1:2550543-2550562 None:intergenic 40.0%
ATCAATCTAAGGGCAAAGGA+GGG - chr2.1:2550845-2550864 MS.gene36246:CDS 40.0%
ATGGACATGCACTTCTATGT+AGG + chr2.1:2549745-2549764 None:intergenic 40.0%
ATGTGTTCCCAAATGCATCA+TGG - chr2.1:2550533-2550552 MS.gene36246:intron 40.0%
CAAGAAGTCTTCACCACAAT+TGG - chr2.1:2550718-2550737 MS.gene36246:CDS 40.0%
CAGACTATGTATGGTAGCAA+TGG - chr2.1:2549557-2549576 MS.gene36246:CDS 40.0%
CATCTTCAACACCAGAGTTA+TGG + chr2.1:2549640-2549659 None:intergenic 40.0%
CCTTATCAATCTAAGGGCAA+AGG - chr2.1:2550841-2550860 MS.gene36246:CDS 40.0%
CCTTTGCCCTTAGATTGATA+AGG + chr2.1:2550844-2550863 None:intergenic 40.0%
CTATGTATGGTAGCAATGGT+TGG - chr2.1:2549561-2549580 MS.gene36246:CDS 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr2.1:2550107-2550126 MS.gene36246:intron 40.0%
GAGCAATTGAACTTGTAGCA+GGG - chr2.1:2550677-2550696 MS.gene36246:CDS 40.0%
GATGCATTTGGGAACACATA+TGG + chr2.1:2550532-2550551 None:intergenic 40.0%
GTCAAATAAATTGGGACGGA+GGG + chr2.1:2549915-2549934 None:intergenic 40.0%
GTTGGGAATCATTTGCTTGT+GGG - chr2.1:2549579-2549598 MS.gene36246:CDS 40.0%
TAGAGCTGATTATCCAGAAG+GGG - chr2.1:2549604-2549623 MS.gene36246:CDS 40.0%
TATCAATCTAAGGGCAAAGG+AGG - chr2.1:2550844-2550863 MS.gene36246:CDS 40.0%
TCAACTATCCATCCTGGTAA+TGG + chr2.1:2550598-2550617 None:intergenic 40.0%
TGGACATGCACTTCTATGTA+GGG + chr2.1:2549744-2549763 None:intergenic 40.0%
TGGATAACAATTTCCCCTTC+TGG + chr2.1:2549620-2549639 None:intergenic 40.0%
TGTGTTCCCAAATGCATCAT+GGG - chr2.1:2550534-2550553 MS.gene36246:intron 40.0%
!! ATGACTGTAGAAGCATTTGC+TGG - chr2.1:2550799-2550818 MS.gene36246:CDS 40.0%
!! ATGCTTTTGGTTGTACCAGA+AGG - chr2.1:2549359-2549378 MS.gene36246:CDS 40.0%
!! GATAACTCTGGTTCTCTTTG+TGG - chr2.1:2550952-2550971 MS.gene36246:CDS 40.0%
!! TATGTCCTCACTTTTGCAGT+TGG - chr2.1:2550748-2550767 MS.gene36246:CDS 40.0%
ATTGATCCCACCACACATTG+AGG - chr2.1:2550561-2550580 MS.gene36246:intron 45.0%
CATCACCAACTGCAAAAGTG+AGG + chr2.1:2550756-2550775 None:intergenic 45.0%
CGACAAGACGTACTAGGATT+AGG - chr2.1:2550899-2550918 MS.gene36246:CDS 45.0%
CTAACAGCATAAGCACCTTC+TGG + chr2.1:2549377-2549396 None:intergenic 45.0%
GAACACTTCACAGTACCAGA+AGG - chr2.1:2550649-2550668 MS.gene36246:intron 45.0%
GGTCAAATAAATTGGGACGG+AGG + chr2.1:2549916-2549935 None:intergenic 45.0%
GGTTGGGAATCATTTGCTTG+TGG - chr2.1:2549578-2549597 MS.gene36246:CDS 45.0%
GTGTTCCCAAATGCATCATG+GGG - chr2.1:2550535-2550554 MS.gene36246:intron 45.0%
GTTGAAGATGATCCAGCTTG+TGG - chr2.1:2549650-2549669 MS.gene36246:CDS 45.0%
TCTGTGTGAAATGAGCCAAG+AGG + chr2.1:2549937-2549956 None:intergenic 45.0%
! AGGTGGGTTCAAAACCTTCA+AGG + chr2.1:2549696-2549715 None:intergenic 45.0%
!! CAGAAGGTGCTTATGCTGTT+AGG - chr2.1:2549375-2549394 MS.gene36246:CDS 45.0%
!! TACCTCTGGTTCTTCTAGGT+GGG + chr2.1:2549712-2549731 None:intergenic 45.0%
!! TTACCTCTGGTTCTTCTAGG+TGG + chr2.1:2549713-2549732 None:intergenic 45.0%
AACCCACCTAGAAGAACCAG+AGG - chr2.1:2549707-2549726 MS.gene36246:CDS 50.0%
AGGCTACGACAAGACGTACT+AGG - chr2.1:2550893-2550912 MS.gene36246:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr2.1:2550111-2550130 MS.gene36246:intron 50.0%
CCACACATTGAGGATGCTCA+TGG - chr2.1:2550571-2550590 MS.gene36246:intron 50.0%
CCATGAGCATCCTCAATGTG+TGG + chr2.1:2550574-2550593 None:intergenic 50.0%
CTCATGGTCCATTACCAGGA+TGG - chr2.1:2550587-2550606 MS.gene36246:intron 50.0%
GAGCATCCTCAATGTGTGGT+GGG + chr2.1:2550570-2550589 None:intergenic 50.0%
GATGCTCATGGTCCATTACC+AGG - chr2.1:2550583-2550602 MS.gene36246:intron 50.0%
GGTGCTTATGCTGTTAGGCT+AGG - chr2.1:2549380-2549399 MS.gene36246:CDS 50.0%
TCAATAAGTGGGCCACAAGC+TGG + chr2.1:2549665-2549684 None:intergenic 50.0%
TGAGCATCCTCAATGTGTGG+TGG + chr2.1:2550571-2550590 None:intergenic 50.0%
!! GGCAAAGGAGGGTTTGTTAG+AGG - chr2.1:2550856-2550875 MS.gene36246:CDS 50.0%
AACATGTACTCCCTCCGTCC+CGG + chr2.1:2550128-2550147 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr2.1:2550115-2550134 MS.gene36246:intron 55.0%
GCGAGCTGCACTGAACGTGA+TGG + chr2.1:2549459-2549478 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr2.1:2550114-2550133 MS.gene36246:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 2549359 2551032 2549359 ID=MS.gene36246
chr2.1 mRNA 2549359 2551032 2549359 ID=MS.gene36246.t1;Parent=MS.gene36246
chr2.1 exon 2550663 2551032 2550663 ID=MS.gene36246.t1.exon1;Parent=MS.gene36246.t1
chr2.1 CDS 2550663 2551032 2550663 ID=cds.MS.gene36246.t1;Parent=MS.gene36246.t1
chr2.1 exon 2549359 2549897 2549359 ID=MS.gene36246.t1.exon2;Parent=MS.gene36246.t1
chr2.1 CDS 2549359 2549897 2549359 ID=cds.MS.gene36246.t1;Parent=MS.gene36246.t1
Gene Sequence

>MS.gene36246

ATGCTTTTGGTTGTACCAGAAGGTGCTTATGCTGTTAGGCTAGGAAATGAAGCATACATTAAACAAAAGGTGAAATTAAATAAAGGGTCATCTTATTCCATCACGTTCAGTGCAGCTCGCACGTGTGCACAAGAAGAGAAGCTTAATGTGTCAGTGGTACCAACTTCTGAGAAAAGAGATTATGGTATCATTCCAATACAGACTATGTATGGTAGCAATGGTTGGGAATCATTTGCTTGTGGGTTTAGAGCTGATTATCCAGAAGGGGAAATTGTTATCCATAACTCTGGTGTTGAAGATGATCCAGCTTGTGGCCCACTTATTGATTCTGTTGCCTTGAAGGTTTTGAACCCACCTAGAAGAACCAGAGGTAATTTTTGTTCCCTACATAGAAGTGCATGTCCATGTATCTAAATTTGTATACATTGATATTGTGCACAAAATTCTACCTAGTTTAATTGTATTTTACTATTTACATATATCATAATGTTATTATTTAAAGTATCTAAATAAATAATAATATGATGATATCATGACTTTGACAAAAGCTACTCCCTCCGTCCCAATTTATTTGACCTCTTGGCTCATTTCACACAGATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTATTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGAGTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGTTATTCCGGGACGGAGGGAGTACATGTTATAATTTTAACAAAATCAAAGTGTCTTCATGATTTCGTCAAATTCATTGTGATTTCAAGCATATATTTATGATGTGTTTGGATTGACGGTAAACATATCACAATCACAGTGTGTTAATGTGATTTTCGCAATTGGAGACAAAGTATCACACACAATGTCATAGTCAAATACATTGTGACTCCATACATGTAATTAAACGGTCCAATATGATTGAATATTTTTGTACATTATGGTTTTTTACATACAAATAAAATTCTTAATTTAATGCAAAGAGGATTAAACTATTTGATGTATGAAATTAAATTTGGATTGAAGTTTAACTATTGTTTTTGTTTGTTTGGTGCAGCCAATTTATTGAAAAATGGAAACTTTGAAGAAGGACCATATGTGTTCCCAAATGCATCATGGGGAGTATTGATCCCACCACACATTGAGGATGCTCATGGTCCATTACCAGGATGGATAGTTGAATCTCTCAAAGCAGTGAAATACATTGATTCTGAACACTTCACAGTACCAGAAGGAAAAAGAGCAATTGAACTTGTAGCAGGGAAAGAAAGTGCACTTGCACAAGAAGTCTTCACCACAATTGGAAAAGTTTATGTCCTCACTTTTGCAGTTGGTGATGCTAATAATGCATGTGAAGGTTCTATGACTGTAGAAGCATTTGCTGGTAGAGACACTGTTCAAGTTCCTTATCAATCTAAGGGCAAAGGAGGGTTTGTTAGAGGCAAACTTCGTTTTAAGGCTACGACAAGACGTACTAGGATTAGGTTCCTAAGTACATTTTACACCATGAAGAATGATAACTCTGGTTCTCTTTGTGGACCTGTTATTGATGATGTAAAATTGCTTAGTGTTCGTTATCCCAACAAGCATACCTAA
Protein sequence

>MS.gene36246.t1

MLLVVPEGAYAVRLGNEAYIKQKVKLNKGSSYSITFSAARTCAQEEKLNVSVVPTSEKRDYGIIPIQTMYGSNGWESFACGFRADYPEGEIVIHNSGVEDDPACGPLIDSVALKVLNPPRRTRANLLKNGNFEEGPYVFPNASWGVLIPPHIEDAHGPLPGWIVESLKAVKYIDSEHFTVPEGKRAIELVAGKESALAQEVFTTIGKVYVLTFAVGDANNACEGSMTVEAFAGRDTVQVPYQSKGKGGFVRGKLRFKATTRRTRIRFLSTFYTMKNDNSGSLCGPVIDDVKLLSVRYPNKHT