Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36274.t1 | XP_003597804.1 | 98.1 | 371 | 7 | 0 | 4 | 374 | 60 | 430 | 3.70E-214 | 753.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36274.t1 | Q944I4 | 72.2 | 371 | 99 | 1 | 6 | 372 | 84 | 454 | 8.3e-162 | 571.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36274.t1 | G7IME0 | 98.1 | 371 | 7 | 0 | 4 | 374 | 60 | 430 | 2.7e-214 | 753.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054408 | MS.gene36274 | 0.809285 | 2.04E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36274.t1 | MTR_2g102510 | 98.113 | 371 | 7 | 0 | 4 | 374 | 60 | 430 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36274.t1 | AT1G80380 | 72.312 | 372 | 99 | 2 | 6 | 373 | 84 | 455 | 0.0 | 573 |
| MS.gene36274.t1 | AT1G80380 | 76.081 | 347 | 82 | 1 | 28 | 373 | 17 | 363 | 0.0 | 570 |
| MS.gene36274.t1 | AT1G80380 | 71.237 | 372 | 97 | 3 | 6 | 373 | 84 | 449 | 0.0 | 556 |
| MS.gene36274.t1 | AT1G80380 | 71.196 | 368 | 80 | 1 | 32 | 373 | 22 | 389 | 0.0 | 553 |
| MS.gene36274.t1 | AT1G80380 | 75.828 | 302 | 72 | 1 | 28 | 328 | 17 | 318 | 7.98e-178 | 497 |
| MS.gene36274.t1 | AT1G80380 | 71.148 | 305 | 78 | 1 | 32 | 336 | 22 | 316 | 8.78e-168 | 471 |
| MS.gene36274.t1 | AT1G80380 | 71.148 | 305 | 78 | 1 | 32 | 336 | 22 | 316 | 8.78e-168 | 471 |
| MS.gene36274.t1 | AT1G80380 | 78.205 | 156 | 34 | 0 | 218 | 373 | 206 | 361 | 5.67e-88 | 270 |
| MS.gene36274.t1 | AT1G80380 | 58.871 | 124 | 47 | 2 | 6 | 125 | 84 | 207 | 3.09e-43 | 154 |
Find 0 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAATAACTACAAA+AGG | - | 15221:8018-8037 | MS.gene36274:intergenic | 10.0% |
| !! | TTGTATAAAGAAATAATAAA+CGG | + | 15221:10664-10683 | MS.gene36274:intron | 10.0% |
| !!! | ATATATTATTCTATTTTTTC+TGG | + | 15221:7265-7284 | MS.gene36274:intron | 10.0% |
| !!! | ATTGTTTTAACTATAAAAAT+AGG | - | 15221:10187-10206 | MS.gene36274:intergenic | 10.0% |
| !! | AAAAATAACTTATGATCATT+TGG | + | 15221:10095-10114 | MS.gene36274:intron | 15.0% |
| !! | TAACTATAAAAATAGGATTT+GGG | - | 15221:10180-10199 | MS.gene36274:intergenic | 15.0% |
| !! | TACAAAATGAAAAAATTATG+AGG | - | 15221:9150-9169 | MS.gene36274:intergenic | 15.0% |
| !! | TATTACTTAGATAAGTAAAA+GGG | + | 15221:7659-7678 | MS.gene36274:intron | 15.0% |
| !! | TTAAAATACAATCTTAAACA+TGG | + | 15221:6886-6905 | MS.gene36274:intron | 15.0% |
| !! | TTAACTATAAAAATAGGATT+TGG | - | 15221:10181-10200 | MS.gene36274:intergenic | 15.0% |
| !! | TTAACTGTAAATATAACTAT+AGG | + | 15221:9096-9115 | MS.gene36274:intron | 15.0% |
| !! | TTATTACTTAGATAAGTAAA+AGG | + | 15221:7658-7677 | MS.gene36274:intron | 15.0% |
| !!! | TATAGATGATTTTTATTTGA+CGG | + | 15221:9385-9404 | MS.gene36274:CDS | 15.0% |
| !!! | TATTGTATGTTAAAATTTTC+AGG | + | 15221:9345-9364 | MS.gene36274:intron | 15.0% |
| !! | AAACCTTAAACAAATGTTTA+AGG | - | 15221:7891-7910 | MS.gene36274:intergenic | 20.0% |
| !! | AAATAAATTCATACAGATCT+TGG | - | 15221:8798-8817 | MS.gene36274:intergenic | 20.0% |
| !! | AACCTTAAACAAATGTTTAA+GGG | - | 15221:7890-7909 | MS.gene36274:intergenic | 20.0% |
| !! | AACTATAAAAATAGGATTTG+GGG | - | 15221:10179-10198 | MS.gene36274:intergenic | 20.0% |
| !! | ACTATATATGGTATATACTT+AGG | + | 15221:7863-7882 | MS.gene36274:intron | 20.0% |
| !! | AGAAGACTAAAAATACAAAT+TGG | - | 15221:7615-7634 | MS.gene36274:intergenic | 20.0% |
| !! | AGTAAACTAAAATTCATTCA+AGG | - | 15221:7942-7961 | MS.gene36274:intergenic | 20.0% |
| !! | ATATTTATTTGTACCACTAA+AGG | - | 15221:9054-9073 | MS.gene36274:intergenic | 20.0% |
| !! | ATGTATAGATAGAATAGAAT+AGG | + | 15221:7207-7226 | MS.gene36274:intron | 20.0% |
| !! | CTTAAAATACAAGATGATAA+AGG | - | 15221:9753-9772 | MS.gene36274:intergenic | 20.0% |
| !! | GCTTATTAAACTTACATTTA+CGG | + | 15221:10255-10274 | MS.gene36274:intron | 20.0% |
| !! | GTTACAAATAATTAGAACTT+TGG | + | 15221:7074-7093 | MS.gene36274:intron | 20.0% |
| !! | TAAATACATAAATGCCTAAT+TGG | - | 15221:8555-8574 | MS.gene36274:intergenic | 20.0% |
| !! | TAGAAGTAAACTAGTTAAAA+AGG | - | 15221:6991-7010 | MS.gene36274:intergenic | 20.0% |
| !! | TATTCTTGCCATAAAAAAAT+TGG | + | 15221:10363-10382 | MS.gene36274:intron | 20.0% |
| !! | TGAAAGAAAATTCATATCTT+TGG | + | 15221:7791-7810 | MS.gene36274:intron | 20.0% |
| !!! | ATAACTATAGGATTTTGTAA+GGG | + | 15221:9108-9127 | MS.gene36274:intron | 20.0% |
| !!! | TATAACTATAGGATTTTGTA+AGG | + | 15221:9107-9126 | MS.gene36274:intron | 20.0% |
| !!! | TATTTTTATTTGAAGTATCC+AGG | + | 15221:9780-9799 | MS.gene36274:intron | 20.0% |
| !!! | TCTTGTTTAGAAACTATATA+TGG | + | 15221:7851-7870 | MS.gene36274:intron | 20.0% |
| !!! | TTTTTTTTAAATTGGTCTAG+TGG | + | 15221:8399-8418 | MS.gene36274:intron | 20.0% |
| ! | AAAGAAGATGAAATTGTAGT+AGG | - | 15221:7448-7467 | MS.gene36274:intergenic | 25.0% |
| ! | AAGAAGATGAAATTGTAGTA+GGG | - | 15221:7447-7466 | MS.gene36274:intergenic | 25.0% |
| ! | ACCAAGATATGATAAAGTAA+GGG | + | 15221:9818-9837 | MS.gene36274:intron | 25.0% |
| ! | AGAGAAATAAGACCAATAAT+GGG | - | 15221:8065-8084 | MS.gene36274:intergenic | 25.0% |
| ! | ATGGATAGTCATTAAGATTA+AGG | + | 15221:10763-10782 | MS.gene36274:CDS | 25.0% |
| ! | CGAAAGAAAAAGAATAAGAT+GGG | - | 15221:9466-9485 | MS.gene36274:intergenic | 25.0% |
| ! | GTCTTCTTTATCTTTGAATT+TGG | - | 15221:9025-9044 | MS.gene36274:intergenic | 25.0% |
| ! | GTTCTCAGATTATACTTAAT+TGG | - | 15221:9585-9604 | MS.gene36274:intergenic | 25.0% |
| ! | TACCAAGATATGATAAAGTA+AGG | + | 15221:9817-9836 | MS.gene36274:intron | 25.0% |
| ! | TATTTACACACATATATGAG+AGG | + | 15221:9556-9575 | MS.gene36274:intron | 25.0% |
| ! | TCGAAAGAAAAAGAATAAGA+TGG | - | 15221:9467-9486 | MS.gene36274:intergenic | 25.0% |
| ! | TTAACCAAAATGTCTAAAGA+AGG | + | 15221:9701-9720 | MS.gene36274:CDS | 25.0% |
| ! | TTACAGTTAAAGCTTATTGA+AGG | - | 15221:9086-9105 | MS.gene36274:intergenic | 25.0% |
| ! | TTGTAACAAACTAACAATGA+GGG | + | 15221:8514-8533 | MS.gene36274:intron | 25.0% |
| !! | GAATCATAGATCAATTTTCA+TGG | + | 15221:6855-6874 | MS.gene36274:intron | 25.0% |
| !! | TCTGAAATGTTAAGTTCAAT+TGG | + | 15221:10023-10042 | MS.gene36274:intron | 25.0% |
| !! | TGAAAGTATATATTCACAAG+AGG | - | 15221:10396-10415 | MS.gene36274:intergenic | 25.0% |
| !!! | ATGAATTTTAGTTTACTTCG+AGG | + | 15221:7945-7964 | MS.gene36274:intron | 25.0% |
| !!! | CTACTTTTTTTTATGAGTTG+AGG | + | 15221:10620-10639 | MS.gene36274:intron | 25.0% |
| !!! | TGAATTTTAGTTTACTTCGA+GGG | + | 15221:7946-7965 | MS.gene36274:intron | 25.0% |
| !!! | TGTACGTTTTAGTTTTCATA+TGG | - | 15221:7118-7137 | MS.gene36274:intergenic | 25.0% |
| !!! | TTTTTTATGAGTTGAGGAAT+TGG | + | 15221:10626-10645 | MS.gene36274:intron | 25.0% |
| AAAAGACTCTCTTACAGTAA+GGG | - | 15221:9982-10001 | MS.gene36273:intergenic | 30.0% | |
| AATTACAAAGTTTGTGATCC+TGG | + | 15221:10846-10865 | MS.gene36274:intron | 30.0% | |
| AGTTAGCAATCATACCAATT+AGG | + | 15221:8538-8557 | MS.gene36274:intron | 30.0% | |
| ATTAGATAGCTTAGAAAGTG+TGG | - | 15221:7548-7567 | MS.gene36274:intergenic | 30.0% | |
| ATTGCAGAATAAACTAAGAG+AGG | + | 15221:9506-9525 | MS.gene36274:intron | 30.0% | |
| ATTTCAGCCTGCAATTTAAA+CGG | - | 15221:10896-10915 | MS.gene36274:intergenic | 30.0% | |
| CAGAGAAATAAGACCAATAA+TGG | - | 15221:8066-8085 | MS.gene36274:intergenic | 30.0% | |
| CTGTATGAATTTATTTGCTC+AGG | + | 15221:8802-8821 | MS.gene36274:CDS | 30.0% | |
| GAAGGAAATACTGAATATAC+AGG | - | 15221:8751-8770 | MS.gene36274:intergenic | 30.0% | |
| GAGCACTAAAGAGATATATT+TGG | + | 15221:7046-7065 | MS.gene36274:intron | 30.0% | |
| GTAAGGGAAAAAATGTTCAA+GGG | + | 15221:9124-9143 | MS.gene36274:intron | 30.0% | |
| GTCCCTTAAACATTTGTTTA+AGG | + | 15221:7885-7904 | MS.gene36274:intron | 30.0% | |
| GTGTTTATTTGAGTATGTGT+TGG | - | 15221:8425-8444 | MS.gene36274:intergenic | 30.0% | |
| GTTGTAACAAACTAACAATG+AGG | + | 15221:8513-8532 | MS.gene36274:intron | 30.0% | |
| TAAAAGACTCTCTTACAGTA+AGG | - | 15221:9983-10002 | MS.gene36274:intergenic | 30.0% | |
| TAATTTACTGATCTGAACCT+GGG | - | 15221:10537-10556 | MS.gene36274:intergenic | 30.0% | |
| TACTCAAATAAACACAGACA+CGG | + | 15221:8430-8449 | MS.gene36274:intron | 30.0% | |
| TATAGATATGCACATTGAAG+AGG | - | 15221:10227-10246 | MS.gene36274:intergenic | 30.0% | |
| TATATATTCACAAGAGGCAA+AGG | - | 15221:10390-10409 | MS.gene36274:intergenic | 30.0% | |
| TCCCTTACTTTATCATATCT+TGG | - | 15221:9822-9841 | MS.gene36274:intergenic | 30.0% | |
| TGTAAGGGAAAAAATGTTCA+AGG | + | 15221:9123-9142 | MS.gene36274:intron | 30.0% | |
| TTTATCTAAACCACTTCATG+TGG | + | 15221:10136-10155 | MS.gene36274:intron | 30.0% | |
| TTTATTTGTACCACTAAAGG+AGG | - | 15221:9051-9070 | MS.gene36274:intergenic | 30.0% | |
| TTTCTCATTCTGTTGGAATT+AGG | + | 15221:8355-8374 | MS.gene36274:intron | 30.0% | |
| ! | AAACCAATTTTGTCAAGCAA+AGG | - | 15221:8829-8848 | MS.gene36274:intergenic | 30.0% |
| ! | ATATCTTGGTAACTTCATCT+TGG | - | 15221:9808-9827 | MS.gene36274:intergenic | 30.0% |
| ! | GAAAACAGATTTTGTATACC+TGG | - | 15221:9418-9437 | MS.gene36274:intergenic | 30.0% |
| ! | GGGAATGAATTTGCATATTT+TGG | + | 15221:9838-9857 | MS.gene36274:intron | 30.0% |
| ! | GGTTTTTGTCGAATACAAAA+GGG | + | 15221:6907-6926 | MS.gene36274:intron | 30.0% |
| ! | GTTTTTGTCGAATACAAAAG+GGG | + | 15221:6908-6927 | MS.gene36274:intron | 30.0% |
| ! | TCATTTTGTATGACTCAGAT+TGG | + | 15221:9160-9179 | MS.gene36274:intron | 30.0% |
| ! | TGATAAAGCCTAACTTTTTG+AGG | - | 15221:8949-8968 | MS.gene36274:intergenic | 30.0% |
| ! | TGGTTTTTGTCGAATACAAA+AGG | + | 15221:6906-6925 | MS.gene36274:intron | 30.0% |
| ! | TGTTTAAGGTTTAATCCTGT+CGG | + | 15221:7899-7918 | MS.gene36274:intron | 30.0% |
| ! | TTAGATAGCTTAGAAAGTGT+GGG | - | 15221:7547-7566 | MS.gene36274:intergenic | 30.0% |
| ! | TTTTACAACTTCAACTGGAA+GGG | - | 15221:10504-10523 | MS.gene36274:intergenic | 30.0% |
| !! | ATTAGTCTCTGTAGGATTTT+GGG | + | 15221:7969-7988 | MS.gene36274:intron | 30.0% |
| !! | TCTCTTCTTTTAAGAATTGG+AGG | - | 15221:7028-7047 | MS.gene36274:intergenic | 30.0% |
| !! | TGCTCTCTTCTTTTAAGAAT+TGG | - | 15221:7031-7050 | MS.gene36274:intergenic | 30.0% |
| !!! | GCAAAGGACCAATTTTTTTA+TGG | - | 15221:10374-10393 | MS.gene36274:intergenic | 30.0% |
| !!! | TACTCTTGTTTTCCCATTAT+TGG | + | 15221:8050-8069 | MS.gene36274:intron | 30.0% |
| !!! | TTTTAGGTTGTGTTGTTTGA+AGG | + | 15221:10458-10477 | MS.gene36274:intron | 30.0% |
| AAAGACTCTCTTACAGTAAG+GGG | - | 15221:9981-10000 | MS.gene36274:intergenic | 35.0% | |
| AAGAATAGGCAAAGATTACG+TGG | + | 15221:7319-7338 | MS.gene36274:intron | 35.0% | |
| AATTTACTGATCTGAACCTG+GGG | - | 15221:10536-10555 | MS.gene36274:intergenic | 35.0% | |
| ACAATTACAATACTTCCTGC+AGG | + | 15221:8664-8683 | MS.gene36274:intron | 35.0% | |
| ACATCGAAATAGACGAAAAG+AGG | + | 15221:11135-11154 | MS.gene36274:CDS | 35.0% | |
| ACCAAAATGTCTAAAGAAGG+TGG | + | 15221:9704-9723 | MS.gene36274:intron | 35.0% | |
| ACGCATCATAATACACTTTG+AGG | - | 15221:10724-10743 | MS.gene36274:intergenic | 35.0% | |
| ACTATATACCAGTCTTCCTA+TGG | + | 15221:8971-8990 | MS.gene36274:CDS | 35.0% | |
| ACTCAAATAAACACAGACAC+GGG | + | 15221:8431-8450 | MS.gene36274:intron | 35.0% | |
| AGAAAAGAGAGACACAAACA+TGG | + | 15221:7390-7409 | MS.gene36274:intron | 35.0% | |
| ATACCTTCCAACTCTTTACT+CGG | + | 15221:11076-11095 | MS.gene36274:CDS | 35.0% | |
| ATAGATAAGTGGTTGTCGTA+TGG | + | 15221:8874-8893 | MS.gene36274:CDS | 35.0% | |
| ATCTTGGACAGATGAAACTT+GGG | - | 15221:8782-8801 | MS.gene36274:intergenic | 35.0% | |
| CAAAGTGTATTATGATGCGT+GGG | + | 15221:10724-10743 | MS.gene36274:CDS | 35.0% | |
| CAACCACTTATCTATAGACT+CGG | - | 15221:8869-8888 | MS.gene36274:intergenic | 35.0% | |
| CACTATTCATAGAAGAGACA+TGG | - | 15221:6935-6954 | MS.gene36274:intergenic | 35.0% | |
| CGATGTTTAGTAGATGTTGA+GGG | - | 15221:11121-11140 | MS.gene36274:intergenic | 35.0% | |
| CTACATTACCAACTATCTTG+GGG | - | 15221:10340-10359 | MS.gene36274:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | - | 15221:7475-7494 | MS.gene36274:intergenic | 35.0% | |
| GCTACATTACCAACTATCTT+GGG | - | 15221:10341-10360 | MS.gene36274:intergenic | 35.0% | |
| GGGACAAATATATACAGTCA+TGG | + | 15221:10744-10763 | MS.gene36274:CDS | 35.0% | |
| GTAATTTACTGATCTGAACC+TGG | - | 15221:10538-10557 | MS.gene36274:intergenic | 35.0% | |
| GTCAAAGTTTCAACCGAAAA+AGG | - | 15221:9677-9696 | MS.gene36274:intergenic | 35.0% | |
| TAGATAAGTGGTTGTCGTAT+GGG | + | 15221:8875-8894 | MS.gene36274:CDS | 35.0% | |
| TCAAAGTGTATTATGATGCG+TGG | + | 15221:10723-10742 | MS.gene36274:CDS | 35.0% | |
| TCGATGTTTAGTAGATGTTG+AGG | - | 15221:11122-11141 | MS.gene36274:intergenic | 35.0% | |
| TGACAGAACCTCAAAAAGTT+AGG | + | 15221:8938-8957 | MS.gene36274:CDS | 35.0% | |
| TGCAACAAAAAAGTCAGCAA+AGG | - | 15221:7355-7374 | MS.gene36274:intergenic | 35.0% | |
| TGCTACATTACCAACTATCT+TGG | - | 15221:10342-10361 | MS.gene36274:intergenic | 35.0% | |
| TTTACAACTTCAACTGGAAG+GGG | - | 15221:10503-10522 | MS.gene36274:intergenic | 35.0% | |
| ! | AAGCCATGATCTTCCTTTTT+CGG | + | 15221:9661-9680 | MS.gene36274:CDS | 35.0% |
| ! | ACAGCTTTTACAACTTCAAC+TGG | - | 15221:10509-10528 | MS.gene36274:intergenic | 35.0% |
| ! | ACCACCTTCTTTAGACATTT+TGG | - | 15221:9708-9727 | MS.gene36274:intergenic | 35.0% |
| ! | ATGTTTTCTTTCCAGTATCG+TGG | + | 15221:9629-9648 | MS.gene36274:intron | 35.0% |
| ! | CACTCATTGCAAGATTTTGA+CGG | + | 15221:8228-8247 | MS.gene36274:intron | 35.0% |
| ! | CTTTTACAACTTCAACTGGA+AGG | - | 15221:10505-10524 | MS.gene36274:intergenic | 35.0% |
| ! | GACATTTTATGTGGAATCTC+AGG | - | 15221:8474-8493 | MS.gene36274:intergenic | 35.0% |
| ! | GACTTCCTTTTCCAAATGAT+TGG | + | 15221:9232-9251 | MS.gene36274:CDS | 35.0% |
| ! | GTTTAAGGTTTAATCCTGTC+GGG | + | 15221:7900-7919 | MS.gene36274:intron | 35.0% |
| !! | GAATTGAGTTGGCATCAAAT+TGG | + | 15221:8102-8121 | MS.gene36274:intron | 35.0% |
| !! | GATTTTTATTTGACGGCTGA+AGG | + | 15221:9392-9411 | MS.gene36274:CDS | 35.0% |
| !! | GTTAGTTTGTTACAACCTAG+TGG | - | 15221:8509-8528 | MS.gene36274:intergenic | 35.0% |
| !! | TTCAAGTTGAAGCTTCAACA+AGG | - | 15221:7775-7794 | MS.gene36274:intergenic | 35.0% |
| !!! | GATTAGTCTCTGTAGGATTT+TGG | + | 15221:7968-7987 | MS.gene36274:intron | 35.0% |
| !!! | TTTTTTCTGGTGCAAATCTG+TGG | + | 15221:7278-7297 | MS.gene36274:intron | 35.0% |
| AAAAGCAGACTGCAAATACC+AGG | - | 15221:9907-9926 | MS.gene36273:intergenic | 40.0% | |
| AAACTAAGAGAGGCTAATCC+AGG | + | 15221:9516-9535 | MS.gene36274:CDS | 40.0% | |
| AAGACTCTCTTACAGTAAGG+GGG | - | 15221:9980-9999 | MS.gene36274:intergenic | 40.0% | |
| AAGCATACCTGCCAATCATT+TGG | - | 15221:9246-9265 | MS.gene36274:intergenic | 40.0% | |
| AATAGGCAAAGATTACGTGG+CGG | + | 15221:7322-7341 | MS.gene36274:intron | 40.0% | |
| ACAATACTTCCTGCAGGTAA+TGG | + | 15221:8670-8689 | MS.gene36274:intron | 40.0% | |
| ACCTGCCAATCATTTGGAAA+AGG | - | 15221:9240-9259 | MS.gene36274:intergenic | 40.0% | |
| AGAAGACATACCTCCTTTAG+TGG | + | 15221:9038-9057 | MS.gene36274:CDS | 40.0% | |
| AGAATAAGCTCCACATGAAG+TGG | - | 15221:10149-10168 | MS.gene36274:intergenic | 40.0% | |
| ATGTACCTGACTTAGAGAAG+TGG | - | 15221:7582-7601 | MS.gene36274:intergenic | 40.0% | |
| ATTGGATTTAGTGCTCCTCA+AGG | + | 15221:9178-9197 | MS.gene36274:CDS | 40.0% | |
| CAACCGAAAAAGGAAGATCA+TGG | - | 15221:9667-9686 | MS.gene36274:intergenic | 40.0% | |
| CAATCTCACTTTCACACCAT+AGG | - | 15221:8990-9009 | MS.gene36274:intergenic | 40.0% | |
| CGTCAAAATCTTGCAATGAG+TGG | - | 15221:8230-8249 | MS.gene36274:intergenic | 40.0% | |
| CTCAAATAAACACAGACACG+GGG | + | 15221:8432-8451 | MS.gene36274:intron | 40.0% | |
| CTGAAATTCCCCAAGATAGT+TGG | + | 15221:10329-10348 | MS.gene36274:intron | 40.0% | |
| GAAATTGTAGTAGGGTGCAA+TGG | - | 15221:7439-7458 | MS.gene36274:intergenic | 40.0% | |
| GATCCTTCTGTTAACAAGCA+CGG | + | 15221:10428-10447 | MS.gene36274:intron | 40.0% | |
| GATCTTGGACAGATGAAACT+TGG | - | 15221:8783-8802 | MS.gene36274:intergenic | 40.0% | |
| GCCTAAAACTTATCTCAGAG+AGG | - | 15221:7753-7772 | MS.gene36274:intergenic | 40.0% | |
| GCTACACTTTCTCATTCTGT+TGG | + | 15221:8348-8367 | MS.gene36274:intron | 40.0% | |
| GGACCTTTGCTTGACAAAAT+TGG | + | 15221:8823-8842 | MS.gene36274:CDS | 40.0% | |
| GTTGCTAATGATGAATTGCC+TGG | + | 15221:9886-9905 | MS.gene36274:intron | 40.0% | |
| TCGAGATGACAAAGTGTGTT+TGG | + | 15221:9483-9502 | MS.gene36274:intron | 40.0% | |
| TGTACCTGACTTAGAGAAGT+GGG | - | 15221:7581-7600 | MS.gene36274:intergenic | 40.0% | |
| TTTGAATTTGGCCTGATGCT+GGG | - | 15221:9013-9032 | MS.gene36274:intergenic | 40.0% | |
| ! | CAAGCACGGATGATACTTTT+AGG | + | 15221:10442-10461 | MS.gene36274:intron | 40.0% |
| ! | TCCTTTTCCAAATGATTGGC+AGG | + | 15221:9236-9255 | MS.gene36274:CDS | 40.0% |
| ! | TGGTATTTGCAGTCTGCTTT+TGG | + | 15221:9906-9925 | MS.gene36274:intron | 40.0% |
| !! | ATTTTGGGTCTGTGGGATTT+AGG | + | 15221:7984-8003 | MS.gene36274:intron | 40.0% |
| !! | TATTTGCAGTCTGCTTTTGG+TGG | + | 15221:9909-9928 | MS.gene36274:intron | 40.0% |
| !!! | GCCTCTCTGAGATAAGTTTT+AGG | + | 15221:7749-7768 | MS.gene36274:intron | 40.0% |
| AAATAAACACAGACACGGGG+AGG | + | 15221:8435-8454 | MS.gene36274:intron | 45.0% | |
| AATAAACACAGACACGGGGA+GGG | + | 15221:8436-8455 | MS.gene36274:intron | 45.0% | |
| ACAGGCTTCTGTGCTATATG+TGG | - | 15221:8324-8343 | MS.gene36274:intergenic | 45.0% | |
| ACCTCATCATCAGACATTCC+AGG | - | 15221:10941-10960 | MS.gene36274:intergenic | 45.0% | |
| CATCGAGCCGTTTAAATTGC+AGG | + | 15221:10886-10905 | MS.gene36274:intron | 45.0% | |
| CATGAACTTCCATTACCTGC+AGG | - | 15221:8682-8701 | MS.gene36274:intergenic | 45.0% | |
| CTTCCAACTCTTTACTCGGA+GGG | + | 15221:11080-11099 | MS.gene36274:CDS | 45.0% | |
| CTTTCACACCATAGGAAGAC+TGG | - | 15221:8982-9001 | MS.gene36274:intergenic | 45.0% | |
| CTTTGAATTTGGCCTGATGC+TGG | - | 15221:9014-9033 | MS.gene36274:intergenic | 45.0% | |
| CTTTGCCTATTCTTGCTCTC+TGG | - | 15221:7313-7332 | MS.gene36274:intergenic | 45.0% | |
| GAAAAGAGGAACCCTATCCT+AGG | + | 15221:11149-11168 | MS.gene36274:CDS | 45.0% | |
| GAAGTCAAGAGCAAAGACGA+GGG | - | 15221:9218-9237 | MS.gene36274:intergenic | 45.0% | |
| GATGCATGGATGTTACAACC+AGG | - | 15221:10867-10886 | MS.gene36274:intergenic | 45.0% | |
| GCAGGCTGAAATTGCTATGA+GGG | + | 15221:10904-10923 | MS.gene36274:intron | 45.0% | |
| GGTAACTTCATCTTGGTACC+TGG | - | 15221:9801-9820 | MS.gene36274:intergenic | 45.0% | |
| TCAATTTCAGGCCATGTCGA+AGG | - | 15221:9954-9973 | MS.gene36274:intergenic | 45.0% | |
| TCATTGCTTGTGCTCTGTTC+AGG | + | 15221:11013-11032 | MS.gene36274:intron | 45.0% | |
| TCCAGGAAATGCACTTCTTG+AGG | + | 15221:9533-9552 | MS.gene36274:CDS | 45.0% | |
| TCGACATGGCCTGAAATTGA+AGG | + | 15221:9954-9973 | MS.gene36274:CDS | 45.0% | |
| TGATGCCAACTCAATTCACG+CGG | - | 15221:8099-8118 | MS.gene36274:intergenic | 45.0% | |
| TGCAGGCTGAAATTGCTATG+AGG | + | 15221:10903-10922 | MS.gene36274:intron | 45.0% | |
| TGGCCGAGTCTATAGATAAG+TGG | + | 15221:8863-8882 | MS.gene36274:CDS | 45.0% | |
| TGTAAAAGCTGTTGATCCCC+AGG | + | 15221:10517-10536 | MS.gene36274:CDS | 45.0% | |
| TTAAACGGCTCGATGATGCA+TGG | - | 15221:10881-10900 | MS.gene36274:intergenic | 45.0% | |
| TTCCAGCATTTCCACGATAC+TGG | - | 15221:9643-9662 | MS.gene36274:intergenic | 45.0% | |
| TTCCAGTATCGTGGAAATGC+TGG | + | 15221:9638-9657 | MS.gene36274:intron | 45.0% | |
| TTCTACCGCGTGAATTGAGT+TGG | + | 15221:8091-8110 | MS.gene36274:intron | 45.0% | |
| TTCTGGTGCAAATCTGTGGT+TGG | + | 15221:7282-7301 | MS.gene36274:intron | 45.0% | |
| TTGTTTGAAGGCTGGATGCT+TGG | + | 15221:10470-10489 | MS.gene36274:CDS | 45.0% | |
| ! | ACCTCAAGAAGTGCATTTCC+TGG | - | 15221:9537-9556 | MS.gene36274:intergenic | 45.0% |
| ! | ATCAAATTGGTCTGACCTGC+CGG | + | 15221:8115-8134 | MS.gene36274:intron | 45.0% |
| ! | CATCCGTGCTTGTTAACAGA+AGG | - | 15221:10434-10453 | MS.gene36274:intergenic | 45.0% |
| ! | CCAAAGGTTCTGATTGAGGA+GGG | - | 15221:8272-8291 | MS.gene36274:intergenic | 45.0% |
| ! | GACAGCATTGAGCACAAGAA+GGG | + | 15221:8724-8743 | MS.gene36274:CDS | 45.0% |
| ! | GGAAGGTATGCATTGTATGC+TGG | - | 15221:11065-11084 | MS.gene36274:intergenic | 45.0% |
| ! | GTCTCCAAAGGTTCTGATTG+AGG | - | 15221:8276-8295 | MS.gene36274:intergenic | 45.0% |
| ! | GTGCAAATCTGTGGTTGGTT+GGG | + | 15221:7287-7306 | MS.gene36274:intron | 45.0% |
| ! | TCCAAAGGTTCTGATTGAGG+AGG | - | 15221:8273-8292 | MS.gene36274:intergenic | 45.0% |
| ! | TCCTGGAATGTCTGATGATG+AGG | + | 15221:10937-10956 | MS.gene36274:CDS | 45.0% |
| ! | TGACAGCATTGAGCACAAGA+AGG | + | 15221:8723-8742 | MS.gene36274:CDS | 45.0% |
| ! | TGAGAAAGTGTAGCAGCAAC+AGG | - | 15221:8342-8361 | MS.gene36274:intergenic | 45.0% |
| ! | TGGTTTCAGTGGTGGTGAAA+GGG | - | 15221:8195-8214 | MS.gene36274:intergenic | 45.0% |
| !! | AATTGGTTTGACGCCAGAGA+AGG | + | 15221:8840-8859 | MS.gene36274:CDS | 45.0% |
| !! | AGGTTGTGTTGTTTGAAGGC+TGG | + | 15221:10462-10481 | MS.gene36274:intron | 45.0% |
| !! | CTGCAGGTAATGGAAGTTCA+TGG | + | 15221:8680-8699 | MS.gene36274:intron | 45.0% |
| !! | CTGTAGGATTTTGGGTCTGT+GGG | + | 15221:7977-7996 | MS.gene36274:intron | 45.0% |
| !! | TCTGTAGGATTTTGGGTCTG+TGG | + | 15221:7976-7995 | MS.gene36274:intron | 45.0% |
| !! | TTCGAGGGATTAGTCTCTGT+AGG | + | 15221:7961-7980 | MS.gene36274:intron | 45.0% |
| !!! | ATCATTTTTTTTTTTTAAAT+TGG | + | 15221:8391-8410 | MS.gene36274:intron | 5.0% |
| AAGTGAGATTGCCCAGCATC+AGG | + | 15221:8999-9018 | MS.gene36274:CDS | 50.0% | |
| ACCACTTGTGAACTGCCATC+CGG | - | 15221:8137-8156 | MS.gene36274:intergenic | 50.0% | |
| ACCCAAGCTGTGTCTATCAG+TGG | + | 15221:10786-10805 | MS.gene36274:CDS | 50.0% | |
| ATAAACACAGACACGGGGAG+GGG | + | 15221:8437-8456 | MS.gene36274:intron | 50.0% | |
| ATCCTCTCATGAACGCAGTG+CGG | + | 15221:8580-8599 | MS.gene36274:intron | 50.0% | |
| CACACCCACTTCTCTAAGTC+AGG | + | 15221:7574-7593 | MS.gene36274:intron | 50.0% | |
| CCCTCCTCAATCAGAACCTT+TGG | + | 15221:8269-8288 | MS.gene36274:intron | 50.0% | |
| CCTCCGAGTAAAGAGTTGGA+AGG | - | 15221:11082-11101 | MS.gene36274:intergenic | 50.0% | |
| CCTTCCAACTCTTTACTCGG+AGG | + | 15221:11079-11098 | MS.gene36274:CDS | 50.0% | |
| CTTGTGCTCAATGCTGTCAG+CGG | - | 15221:8722-8741 | MS.gene36274:intergenic | 50.0% | |
| GAAACTTGGGCAGGTGATGA+AGG | - | 15221:8769-8788 | MS.gene36274:intergenic | 50.0% | |
| GAAATTGCTATGAGGGAGGC+AGG | + | 15221:10911-10930 | MS.gene36274:CDS | 50.0% | |
| GCAATGAGTGGTTCACTGTC+CGG | - | 15221:8218-8237 | MS.gene36274:intergenic | 50.0% | |
| GCCACTGATAGACACAGCTT+GGG | - | 15221:10790-10809 | MS.gene36274:intergenic | 50.0% | |
| GGAAGTCAAGAGCAAAGACG+AGG | - | 15221:9219-9238 | MS.gene36274:intergenic | 50.0% | |
| GGCTGAAATTGCTATGAGGG+AGG | + | 15221:10907-10926 | MS.gene36274:intron | 50.0% | |
| GGTATGCATTGTATGCTGGC+AGG | - | 15221:11061-11080 | MS.gene36274:intergenic | 50.0% | |
| GGTGCAAATCTGTGGTTGGT+TGG | + | 15221:7286-7305 | MS.gene36274:intron | 50.0% | |
| GTAAGGGGGCCTTCAATTTC+AGG | - | 15221:9966-9985 | MS.gene36274:intergenic | 50.0% | |
| GTTGTCTTTCCACAGCCTTG+AGG | - | 15221:9196-9215 | MS.gene36274:intergenic | 50.0% | |
| TGGACAGATGAAACTTGGGC+AGG | - | 15221:8778-8797 | MS.gene36274:intergenic | 50.0% | |
| TGTTGAGGGTCTGATCCACT+CGG | - | 15221:11107-11126 | MS.gene36274:intergenic | 50.0% | |
| TTATTTGACGGCTGAAGGCC+AGG | + | 15221:9397-9416 | MS.gene36274:CDS | 50.0% | |
| TTCACCACCACTGAAACCAC+CGG | + | 15221:8196-8215 | MS.gene36274:intron | 50.0% | |
| TTGGGCCAGAGAGCAAGAAT+AGG | + | 15221:7305-7324 | MS.gene36274:intron | 50.0% | |
| TTTAGTGCTCCTCAAGGCTG+TGG | + | 15221:9184-9203 | MS.gene36274:CDS | 50.0% | |
| ! | AGAACCTTTGGAGACCACCT+TGG | + | 15221:8281-8300 | MS.gene36274:intron | 50.0% |
| ! | ATCGTGCTGATCCTTCGACA+TGG | + | 15221:9940-9959 | MS.gene36274:CDS | 50.0% |
| ! | CGCTGCGAGGACATTTTATG+TGG | - | 15221:8483-8502 | MS.gene36274:intergenic | 50.0% |
| ! | GAACCTTTGGAGACCACCTT+GGG | + | 15221:8282-8301 | MS.gene36274:intron | 50.0% |
| ! | GTGGTTTCAGTGGTGGTGAA+AGG | - | 15221:8196-8215 | MS.gene36274:intergenic | 50.0% |
| !! | ATTTTGACGGCTAGTCCCAC+CGG | + | 15221:8241-8260 | MS.gene36274:intron | 50.0% |
| !! | CAGTCTGCTTTTGGTGGAAG+AGG | + | 15221:9915-9934 | MS.gene36274:intron | 50.0% |
| AACCTAGTGGTTTCGCTGCG+AGG | - | 15221:8496-8515 | MS.gene36274:intergenic | 55.0% | |
| ATAGACTCGGCCACCTTCTC+TGG | - | 15221:8856-8875 | MS.gene36274:intergenic | 55.0% | |
| ATGAGTGGTTCACTGTCCGG+TGG | - | 15221:8215-8234 | MS.gene36274:intergenic | 55.0% | |
| CACTTTCATACGCACCCGAC+AGG | - | 15221:7917-7936 | MS.gene36274:intergenic | 55.0% | |
| CGCCACTGATAGACACAGCT+TGG | - | 15221:10791-10810 | MS.gene36274:intergenic | 55.0% | |
| CTGATTGAGGAGGGACTGTC+CGG | - | 15221:8263-8282 | MS.gene36274:intergenic | 55.0% | |
| GATGAGGTATGTCGCTCGCA+CGG | + | 15221:10953-10972 | MS.gene36274:intron | 55.0% | |
| GGACCCTCCGAGTAAAGAGT+TGG | - | 15221:11086-11105 | MS.gene36274:intergenic | 55.0% | |
| TAAACACAGACACGGGGAGG+GGG | + | 15221:8438-8457 | MS.gene36274:intron | 55.0% | |
| TATCAGTGGCGCTTGCAGGT+AGG | + | 15221:10800-10819 | MS.gene36274:intron | 55.0% | |
| TCACTGTCCGGTGGTTTCAG+TGG | - | 15221:8206-8225 | MS.gene36274:intergenic | 55.0% | |
| TGGTTTGACGCCAGAGAAGG+TGG | + | 15221:8843-8862 | MS.gene36274:CDS | 55.0% | |
| TGTCTATCAGTGGCGCTTGC+AGG | + | 15221:10796-10815 | MS.gene36274:CDS | 55.0% | |
| ! | AATTGGTCTGACCTGCCGGA+TGG | + | 15221:8119-8138 | MS.gene36274:intron | 55.0% |
| ACGCCCAAGGTGGTCTCCAA+AGG | - | 15221:8288-8307 | MS.gene36274:intergenic | 60.0% | |
| ATGAGGGAGGCAGGCAATCC+TGG | + | 15221:10920-10939 | MS.gene36274:CDS | 60.0% | |
| ATTGAGGAGGGACTGTCCGG+TGG | - | 15221:8260-8279 | MS.gene36274:intergenic | 60.0% | |
| CTGTCCGGTGGTTTCAGTGG+TGG | - | 15221:8203-8222 | MS.gene36274:intergenic | 60.0% | |
| CTTGTGAACTGCCATCCGGC+AGG | - | 15221:8133-8152 | MS.gene36274:intergenic | 60.0% | |
| CTTTACTCGGAGGGTCCGAG+TGG | + | 15221:11089-11108 | MS.gene36274:CDS | 60.0% | |
| GACCGCACTGCGTTCATGAG+AGG | - | 15221:8585-8604 | MS.gene36274:intergenic | 60.0% | |
| GCCGGATGGCAGTTCACAAG+TGG | + | 15221:8133-8152 | MS.gene36274:intron | 60.0% | |
| GTCCTCGCAGCGAAACCACT+AGG | + | 15221:8491-8510 | MS.gene36274:intron | 60.0% | |
| GTGCTCAATGCTGTCAGCGG+TGG | - | 15221:8719-8738 | MS.gene36274:intergenic | 60.0% | |
| TTGAGGAGGGACTGTCCGGT+GGG | - | 15221:8259-8278 | MS.gene36274:intergenic | 60.0% | |
| TTTGGAGACCACCTTGGGCG+TGG | + | 15221:8287-8306 | MS.gene36274:intron | 60.0% | |
| ACCACCTTGGGCGTGGTGGT+TGG | + | 15221:8294-8313 | MS.gene36274:intron | 65.0% | |
| AGACACGGGGAGGGGGAATG+TGG | + | 15221:8445-8464 | MS.gene36274:intron | 65.0% | |
| CTCTCCAACCACCACGCCCA+AGG | - | 15221:8301-8320 | MS.gene36274:intergenic | 65.0% | |
| TCCAACCACCACGCCCAAGG+TGG | - | 15221:8298-8317 | MS.gene36274:intergenic | 65.0% | |
| GGAGACCACCTTGGGCGTGG+TGG | + | 15221:8290-8309 | MS.gene36274:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15221 | gene | 6824 | 11178 | 6824 | ID=MS.gene36274 |
| 15221 | mRNA | 6824 | 11178 | 6824 | ID=MS.gene36274.t1;Parent=MS.gene36274 |
| 15221 | exon | 6824 | 6833 | 6824 | ID=MS.gene36274.t1.exon1;Parent=MS.gene36274.t1 |
| 15221 | CDS | 6824 | 6833 | 6824 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 8686 | 9059 | 8686 | ID=MS.gene36274.t1.exon2;Parent=MS.gene36274.t1 |
| 15221 | CDS | 8686 | 9059 | 8686 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 9178 | 9257 | 9178 | ID=MS.gene36274.t1.exon3;Parent=MS.gene36274.t1 |
| 15221 | CDS | 9178 | 9257 | 9178 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 9367 | 9418 | 9367 | ID=MS.gene36274.t1.exon4;Parent=MS.gene36274.t1 |
| 15221 | CDS | 9367 | 9418 | 9367 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 9513 | 9554 | 9513 | ID=MS.gene36274.t1.exon5;Parent=MS.gene36274.t1 |
| 15221 | CDS | 9513 | 9554 | 9513 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 9644 | 9722 | 9644 | ID=MS.gene36274.t1.exon6;Parent=MS.gene36274.t1 |
| 15221 | CDS | 9644 | 9722 | 9644 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 9802 | 9833 | 9802 | ID=MS.gene36274.t1.exon7;Parent=MS.gene36274.t1 |
| 15221 | CDS | 9802 | 9833 | 9802 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 9918 | 9986 | 9918 | ID=MS.gene36274.t1.exon8;Parent=MS.gene36274.t1 |
| 15221 | CDS | 9918 | 9986 | 9918 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 10464 | 10538 | 10464 | ID=MS.gene36274.t1.exon9;Parent=MS.gene36274.t1 |
| 15221 | CDS | 10464 | 10538 | 10464 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 10701 | 10817 | 10701 | ID=MS.gene36274.t1.exon10;Parent=MS.gene36274.t1 |
| 15221 | CDS | 10701 | 10817 | 10701 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 10908 | 10958 | 10908 | ID=MS.gene36274.t1.exon11;Parent=MS.gene36274.t1 |
| 15221 | CDS | 10908 | 10958 | 10908 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| 15221 | exon | 11035 | 11178 | 11035 | ID=MS.gene36274.t1.exon12;Parent=MS.gene36274.t1 |
| 15221 | CDS | 11035 | 11178 | 11035 | ID=cds.MS.gene36274.t1;Parent=MS.gene36274.t1 |
| Gene Sequence |
| Protein sequence |
