AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36456


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36456.t1 MTR_4g094555 90.274 401 38 1 1 400 1 401 0.0 753
MS.gene36456.t1 MTR_4g094548 84.119 403 61 3 1 400 1 403 0.0 699
MS.gene36456.t1 MTR_4g094570 81.796 401 72 1 1 400 1 401 0.0 692
MS.gene36456.t1 MTR_4g094562 82.045 401 71 1 1 400 1 401 0.0 682
MS.gene36456.t1 MTR_4g094550 81.095 402 74 2 1 400 1 402 0.0 678
MS.gene36456.t1 MTR_4g094560 81.500 400 65 1 1 400 1 391 0.0 666
MS.gene36456.t1 MTR_6g048350 76.808 401 92 1 1 400 1 401 0.0 654
MS.gene36456.t1 MTR_6g048310 75.628 398 93 1 3 400 2 395 0.0 625
MS.gene36456.t1 MTR_4g094565 67.750 400 49 2 1 400 1 320 0.0 516
MS.gene36456.t1 MTR_1g052640 59.901 404 151 4 1 400 1 397 0.0 516
MS.gene36456.t1 MTR_2g030460 58.663 404 156 4 1 400 1 397 0.0 512
MS.gene36456.t1 MTR_2g030470 61.097 401 146 3 3 400 6 399 2.37e-178 518
MS.gene36456.t1 MTR_2g030470 59.305 403 154 3 1 400 416 811 1.36e-173 506
MS.gene36456.t1 MTR_0083s0100 61.290 372 136 2 30 400 33 397 5.44e-178 502
MS.gene36456.t1 MTR_4g094562 78.041 296 64 1 1 295 1 296 2.30e-170 479
MS.gene36456.t1 MTR_2g030480 57.568 403 141 4 1 400 1 376 2.69e-167 474
MS.gene36456.t1 MTR_4g094565 76.140 285 41 1 1 285 1 258 1.39e-150 429
MS.gene36456.t1 MTR_1g052640 58.944 341 129 4 1 337 1 334 2.32e-149 427
MS.gene36456.t1 MTR_2g030460 56.891 341 136 4 1 337 1 334 4.41e-148 423
MS.gene36456.t1 MTR_8g039300 44.500 400 200 7 1 391 1 387 4.47e-127 372
MS.gene36456.t1 MTR_1g052640 58.131 289 110 4 1 285 1 282 3.50e-123 358
MS.gene36456.t1 MTR_6g089930 41.855 399 212 6 1 391 1 387 1.44e-121 358
MS.gene36456.t1 MTR_6g090090 42.356 399 200 7 1 391 27 403 2.06e-118 351
MS.gene36456.t1 MTR_3g035040 43.000 400 206 7 1 391 1 387 7.30e-118 349
MS.gene36456.t1 MTR_1g035220 41.071 392 188 8 1 383 1 358 1.55e-106 318
MS.gene36456.t1 MTR_1g062750 40.336 238 128 4 58 286 2 234 8.38e-65 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36456.t1 AT5G61820 55.172 406 160 6 10 400 10 408 9.13e-160 458
MS.gene36456.t1 AT5G61820 55.172 406 160 6 10 400 10 408 9.13e-160 458

Find 93 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTAAGATACACAGTTAAA+TGG 0.194648 4.1:+18705191 MS.gene36456:CDS
AACCCTTCTGGAATCTCTTC+AGG 0.298573 4.1:-18704953 None:intergenic
GGTCGCTGTTCCACGTGTTT+CGG 0.306179 4.1:-18704894 None:intergenic
CATTTGTCCTCAAACCCTTC+TGG 0.306749 4.1:-18704965 None:intergenic
CATCAACATTCAGGTGGAAT+TGG 0.323134 4.1:+18705792 MS.gene36456:CDS
GGAATTGGATCAACTCTATA+CGG 0.323756 4.1:+18705807 MS.gene36456:CDS
ACACAGTTAAATGGGTTGAT+TGG 0.350890 4.1:+18705200 MS.gene36456:CDS
CTGTCCCCTAAGTTTGAACT+TGG 0.351190 4.1:+18704590 MS.gene36456:CDS
ACCGATATTCCGGATCCTTT+CGG 0.371967 4.1:+18704914 MS.gene36456:CDS
CTTAAGTAGAGGCTTCTCTT+TGG 0.373052 4.1:-18705175 None:intergenic
CAGAAGGGTTTGAGGACAAA+TGG 0.373646 4.1:+18704966 MS.gene36456:CDS
ACAAACCATAAGGAGGAAAA+TGG 0.374430 4.1:+18705702 MS.gene36456:CDS
GCAATACTTCTACTATTGTT+TGG 0.376913 4.1:+18704509 MS.gene36456:CDS
ATTTCACAATACTTTGGCCT+TGG 0.380830 4.1:+18704869 MS.gene36456:CDS
CACAGTTAAATGGGTTGATT+GGG 0.382104 4.1:+18705201 MS.gene36456:CDS
ATCTTGACAGAACCTGGTTT+AGG 0.385522 4.1:-18706337 None:intergenic
GGTGTTGCTCATCAACATTC+AGG 0.386508 4.1:+18705783 MS.gene36456:CDS
TGGAACAGCGACCGATATTC+CGG 0.386546 4.1:+18704904 MS.gene36456:CDS
ATTCATTTACCTTGCAATCA+TGG 0.389066 4.1:-18705312 None:intergenic
CATCTACCGTAACATTATAA+AGG 0.393321 4.1:-18705060 None:intergenic
TAGGTTTCATGGAGAGGTAT+AGG 0.398215 4.1:-18704716 None:intergenic
TGTTCTTCTATACCAAGTTA+TGG 0.408649 4.1:+18706256 MS.gene36456:CDS
AACAAGCCAATGATGGAGAT+AGG 0.411590 4.1:-18704735 None:intergenic
AATGATGGAGATAGGTTTCA+TGG 0.414097 4.1:-18704727 None:intergenic
TCTATTAGGTCAAATTATAA+AGG 0.420274 4.1:+18705094 MS.gene36456:CDS
TCTATACCAAGTTATGGAAC+TGG 0.424145 4.1:+18706262 MS.gene36456:CDS
CTTAAGATACACAGTTAAAT+GGG 0.432170 4.1:+18705192 MS.gene36456:CDS
AATGAGGCAAACTATATTGT+AGG 0.434805 4.1:+18706298 MS.gene36456:CDS
AATGTTATTTCACAATACTT+TGG 0.442468 4.1:+18704863 MS.gene36456:CDS
ACTGGTGGATATGTGATCTA+TGG 0.444549 4.1:+18705762 MS.gene36456:CDS
TCATTTCCAGTTCCATAACT+TGG 0.445096 4.1:-18706268 None:intergenic
ACCGAAAGGATCCGGAATAT+CGG 0.445892 4.1:-18704915 None:intergenic
ATGAACATGGAAGGTCTATT+AGG 0.448357 4.1:+18705080 MS.gene36456:CDS
AGAGATTCCAGAAGGGTTTG+AGG 0.448379 4.1:+18704958 MS.gene36456:CDS
TGACTTTGTTGTTAGGAGTT+GGG 0.449783 4.1:+18707383 MS.gene36456:intron
ACATATCCACCAGTTTGAAA+TGG 0.452253 4.1:-18705753 None:intergenic
AAACTATCAGATGATTCAAA+AGG 0.461623 4.1:+18705277 MS.gene36456:CDS
TTAAGTGCTATATGCCCTCT+TGG 0.461718 4.1:-18704656 None:intergenic
CCTAAGTTTGAACTTGGACC+TGG 0.465219 4.1:+18704596 MS.gene36456:CDS
ATCTCTATACCGAAAGGATC+CGG 0.465291 4.1:-18704923 None:intergenic
GATCCTTTCGGTATAGAGAT+AGG 0.466983 4.1:+18704926 MS.gene36456:CDS
TCAATTATCTTGACAGAACC+TGG 0.470885 4.1:-18706343 None:intergenic
ACAAGTCTTCCATTTCAAAC+TGG 0.476738 4.1:+18705744 MS.gene36456:CDS
CCAGGTCCAAGTTCAAACTT+AGG 0.478184 4.1:-18704596 None:intergenic
GGTTCTGTCAAGATAATTGA+TGG 0.487432 4.1:+18706346 MS.gene36456:CDS
ATGAAACCTATCTCCATCAT+TGG 0.488855 4.1:+18704729 MS.gene36456:CDS
GTGTGACCTTTATAATGTTA+CGG 0.489855 4.1:+18705054 MS.gene36456:CDS
CAGGTCCAAGTTCAAACTTA+GGG 0.493018 4.1:-18704595 None:intergenic
TGTTTATTGATAACTGATCC+AGG 0.496378 4.1:-18704614 None:intergenic
TTCTACACGGTGTAAATTGA+AGG 0.497869 4.1:+18705138 MS.gene36456:CDS
GTCTTTCAACAAGCCAATGA+TGG 0.504006 4.1:-18704742 None:intergenic
AGAAGGGTTTGAGGACAAAT+GGG 0.513516 4.1:+18704967 MS.gene36456:CDS
ATCTTGCAGCACAAACCATA+AGG 0.514953 4.1:+18705692 MS.gene36456:CDS
TATGGAACTGGAAATGAAGC+AGG 0.523961 4.1:+18706274 MS.gene36456:CDS
TTCCACGTGTTTCGGATCCA+AGG 0.534319 4.1:-18704886 None:intergenic
AGTCTTCCATTTCAAACTGG+TGG 0.536429 4.1:+18705747 MS.gene36456:CDS
GAGGAACAGTGGCATATGCC+AGG 0.537970 4.1:+18704838 MS.gene36456:CDS
TGTTCATGCCATCGATACAC+GGG 0.542757 4.1:+18704997 MS.gene36456:CDS
TAACTGTGTATCTTAAGTAG+AGG 0.548989 4.1:-18705186 None:intergenic
ATTAGGTCAAATTATAAAGG+AGG 0.549423 4.1:+18705097 MS.gene36456:CDS
TGGAAATGAAGCAGGAAATG+AGG 0.550055 4.1:+18706282 MS.gene36456:CDS
TCTAACTACAACAGCAGCAA+GGG 0.551112 4.1:+18706388 MS.gene36456:CDS
ATGTTCATGCCATCGATACA+CGG 0.551421 4.1:+18704996 MS.gene36456:CDS
ATTGTGAAATAACATTCTCC+TGG 0.553065 4.1:-18704856 None:intergenic
AACAGCAGCAAGGGGCACAC+TGG 0.559463 4.1:+18706397 MS.gene36456:CDS
TGGATCAACTCTATACGGGC+AGG 0.560753 4.1:+18705812 MS.gene36456:CDS
ACACGGTGTAAATTGAAGGA+AGG 0.579319 4.1:+18705142 MS.gene36456:CDS
GTCTAACTACAACAGCAGCA+AGG 0.581714 4.1:+18706387 MS.gene36456:CDS
TGGAGATAGGTTTCATGGAG+AGG 0.587595 4.1:-18704722 None:intergenic
GAATTGGATCAACTCTATAC+GGG 0.589113 4.1:+18705808 MS.gene36456:CDS
GAACTCAGACCATGATTGCA+AGG 0.595058 4.1:+18705303 MS.gene36456:CDS
GGCCTTGGATCCGAAACACG+TGG 0.606081 4.1:+18704884 MS.gene36456:CDS
GCTGAAGTAGTTGATGATGC+TGG 0.614547 4.1:+18704689 MS.gene36456:CDS
ATGGTTGTGTTCATGTGAAG+AGG 0.619686 4.1:+18705721 MS.gene36456:CDS
ACTCTGATCATGTTCTTGTG+AGG 0.633094 4.1:+18704819 MS.gene36456:CDS
TCCACATGTTATCCTAAACC+AGG 0.633112 4.1:+18706325 MS.gene36456:CDS
AATCCTGAAGAGATTCCAGA+AGG 0.639599 4.1:+18704950 MS.gene36456:CDS
TTACCTATCTCTATACCGAA+AGG 0.640325 4.1:-18704929 None:intergenic
ACCTGGTTTAGGATAACATG+TGG 0.643141 4.1:-18706326 None:intergenic
AATGTTACGGTAGATGAACA+TGG 0.647349 4.1:+18705067 MS.gene36456:CDS
CATGTTCTTGTGAGGAACAG+TGG 0.650998 4.1:+18704827 MS.gene36456:CDS
GTTGCTCATCAACATTCAGG+TGG 0.654778 4.1:+18705786 MS.gene36456:CDS
CAATCATGAAACTAGCATTG+TGG 0.656878 4.1:-18707407 None:intergenic
ATCCTGAAGAGATTCCAGAA+GGG 0.660203 4.1:+18704951 MS.gene36456:CDS
TTACGGTAGATGAACATGGA+AGG 0.664360 4.1:+18705071 MS.gene36456:CDS
GTAGTTAACATCTGTGTGTG+TGG 0.668250 4.1:-18704783 None:intergenic
TTGCAGCACAAACCATAAGG+AGG 0.679495 4.1:+18705695 MS.gene36456:CDS
CTAACTACAACAGCAGCAAG+GGG 0.685180 4.1:+18706389 MS.gene36456:CDS
TATGTTGTTATGATTCTACA+CGG 0.698305 4.1:+18705125 MS.gene36456:CDS
GTTCATGCCATCGATACACG+GGG 0.700269 4.1:+18704998 MS.gene36456:CDS
AGGTCCAAGTTCAAACTTAG+GGG 0.710834 4.1:-18704594 None:intergenic
TCATGCCATCGATACACGGG+GGG 0.721292 4.1:+18705000 MS.gene36456:CDS
TTCATGCCATCGATACACGG+GGG 0.740248 4.1:+18704999 MS.gene36456:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAGTAACATATATATAT+AGG + chr4.1:18706532-18706551 MS.gene36456:intron 10.0%
!!! TTTTGATTATTTTAAAATCA+AGG + chr4.1:18705454-18705473 MS.gene36456:intron 10.0%
!! TTAATTTATATAAACTCAAG+TGG + chr4.1:18707246-18707265 MS.gene36456:intron 15.0%
!! TTCAAATATTAAACCATATT+TGG - chr4.1:18707018-18707037 None:intergenic 15.0%
!!! AAAAAAATTTTTTTAGTGGT+CGG - chr4.1:18706911-18706930 None:intergenic 15.0%
!! CTTGATTAAGAAGTTAAATA+TGG + chr4.1:18706168-18706187 MS.gene36456:intron 20.0%
!! GACAATGTATAATATATGTA+AGG + chr4.1:18706870-18706889 MS.gene36456:intron 20.0%
!! TATATATATAGGAACATAAG+TGG + chr4.1:18706543-18706562 MS.gene36456:intron 20.0%
!! TATCCATAAAAAAAGAAGAA+CGG - chr4.1:18706492-18706511 None:intergenic 20.0%
!! TCTATTAGGTCAAATTATAA+AGG + chr4.1:18705094-18705113 MS.gene36456:CDS 20.0%
!! TGTATAATATATGTAAGGTA+CGG + chr4.1:18706875-18706894 MS.gene36456:intron 20.0%
!! TTCAAAAAAGAAATCATTGA+AGG + chr4.1:18705927-18705946 MS.gene36456:intron 20.0%
!!! AAAAAATTTTTTTAGTGGTC+GGG - chr4.1:18706910-18706929 None:intergenic 20.0%
!!! AATGTTATTTCACAATACTT+TGG + chr4.1:18704863-18704882 MS.gene36456:CDS 20.0%
!!! AGCTGATTTTATTTTATCTT+CGG - chr4.1:18704564-18704583 None:intergenic 20.0%
!!! TAGAGATTTTGTATTTTTAG+TGG + chr4.1:18704487-18704506 MS.gene36456:CDS 20.0%
!!! TCTAACAATTTTTTCTACAA+GGG - chr4.1:18707204-18707223 None:intergenic 20.0%
!!! TTCTAACAATTTTTTCTACA+AGG - chr4.1:18707205-18707224 None:intergenic 20.0%
! AAAAAAACATGCATAGCTTA+TGG - chr4.1:18706946-18706965 None:intergenic 25.0%
! AAAAAACATGCATAGCTTAT+GGG - chr4.1:18706945-18706964 None:intergenic 25.0%
! AAACTATCAGATGATTCAAA+AGG + chr4.1:18705277-18705296 MS.gene36456:CDS 25.0%
! ACAACAAAGTCAAACAATAT+AGG - chr4.1:18707375-18707394 None:intergenic 25.0%
! ACAATATAGGTTAGAAAACA+AGG - chr4.1:18707362-18707381 None:intergenic 25.0%
! ACTTAAGATACACAGTTAAA+TGG + chr4.1:18705191-18705210 MS.gene36456:CDS 25.0%
! AGAAATAGATTTCGTATAGT+TGG + chr4.1:18705357-18705376 MS.gene36456:intron 25.0%
! ATCCATAAAAAAAGAAGAAC+GGG - chr4.1:18706491-18706510 None:intergenic 25.0%
! ATTAGGTCAAATTATAAAGG+AGG + chr4.1:18705097-18705116 MS.gene36456:CDS 25.0%
! CTTAAGATACACAGTTAAAT+GGG + chr4.1:18705192-18705211 MS.gene36456:CDS 25.0%
! GAAATAGATTTCGTATAGTT+GGG + chr4.1:18705358-18705377 MS.gene36456:intron 25.0%
! GAATTGAAATGAAGAATGTT+TGG + chr4.1:18707035-18707054 MS.gene36456:intron 25.0%
! GTATAATATATGTAAGGTAC+GGG + chr4.1:18706876-18706895 MS.gene36456:intron 25.0%
! GTTGACAAAAACTACAAATA+AGG - chr4.1:18705576-18705595 None:intergenic 25.0%
! TATAATATATGTAAGGTACG+GGG + chr4.1:18706877-18706896 MS.gene36456:intron 25.0%
! TATAGCTGCTTAATGTAAAA+GGG + chr4.1:18706770-18706789 MS.gene36456:intron 25.0%
! TATGTTGTTATGATTCTACA+CGG + chr4.1:18705125-18705144 MS.gene36456:CDS 25.0%
! TGCTTTCATTAACAAGAAAA+AGG + chr4.1:18706135-18706154 MS.gene36456:intron 25.0%
!! CATACAATACTACGATTTTT+AGG - chr4.1:18707162-18707181 None:intergenic 25.0%
!! TGGACTATTGTTATGTTTTA+GGG - chr4.1:18705608-18705627 None:intergenic 25.0%
!!! AAAAATTTTTTTAGTGGTCG+GGG - chr4.1:18706909-18706928 None:intergenic 25.0%
!!! AACTTGGATTTTTTTGTTTC+AGG + chr4.1:18705653-18705672 MS.gene36456:intron 25.0%
!!! AGTGCAACTTATTTTTGAAA+CGG + chr4.1:18707091-18707110 MS.gene36456:intron 25.0%
!!! ATGATATTGATTTTCCAAGA+GGG + chr4.1:18704642-18704661 MS.gene36456:CDS 25.0%
!!! ATGGACTATTGTTATGTTTT+AGG - chr4.1:18705609-18705628 None:intergenic 25.0%
!!! TATGATATTGATTTTCCAAG+AGG + chr4.1:18704641-18704660 MS.gene36456:CDS 25.0%
!!! TATTGTTTGACTTTGTTGTT+AGG + chr4.1:18707376-18707395 MS.gene36456:intron 25.0%
!!! TATTTTAAAATCAAGGACAC+CGG + chr4.1:18705461-18705480 MS.gene36456:intron 25.0%
AAGAAGACATTCTTCATATC+AGG - chr4.1:18707288-18707307 None:intergenic 30.0%
AAGTGGAATAAAGACAAGAT+TGG + chr4.1:18706616-18706635 MS.gene36456:intron 30.0%
AAGTTCGTTTCAAATGTTTG+AGG - chr4.1:18707067-18707086 None:intergenic 30.0%
AATGAGGCAAACTATATTGT+AGG + chr4.1:18706298-18706317 MS.gene36456:CDS 30.0%
AGTGGAATAAAGACAAGATT+GGG + chr4.1:18706617-18706636 MS.gene36456:intron 30.0%
ATAAGCACATTAATGACTGT+TGG - chr4.1:18705519-18705538 None:intergenic 30.0%
ATATGATTGATCGATCAAAG+TGG + chr4.1:18706599-18706618 MS.gene36456:intron 30.0%
ATTCATTTACCTTGCAATCA+TGG - chr4.1:18705315-18705334 None:intergenic 30.0%
ATTGTGAAATAACATTCTCC+TGG - chr4.1:18704859-18704878 None:intergenic 30.0%
ATTTAGTCACAAATGTGTCT+CGG - chr4.1:18706065-18706084 None:intergenic 30.0%
CATCTACCGTAACATTATAA+AGG - chr4.1:18705063-18705082 None:intergenic 30.0%
GAATATGGACAAACCAAATA+TGG + chr4.1:18707002-18707021 MS.gene36456:intron 30.0%
GACAAATCATATGTGAATGA+CGG + chr4.1:18705399-18705418 MS.gene36456:intron 30.0%
GCAATACTTCTACTATTGTT+TGG + chr4.1:18704509-18704528 MS.gene36456:CDS 30.0%
GTATAGCTGCTTAATGTAAA+AGG + chr4.1:18706769-18706788 MS.gene36456:intron 30.0%
GTGTGACCTTTATAATGTTA+CGG + chr4.1:18705054-18705073 MS.gene36456:CDS 30.0%
TAAATTGAGAGTCTCTCTTA+AGG - chr4.1:18705978-18705997 None:intergenic 30.0%
TAACTGTGTATCTTAAGTAG+AGG - chr4.1:18705189-18705208 None:intergenic 30.0%
TCACTCTTTAGTGTATCATA+TGG + chr4.1:18706723-18706742 MS.gene36456:intron 30.0%
TGTTACACATCACAAGTTAT+AGG + chr4.1:18706975-18706994 MS.gene36456:intron 30.0%
TGTTCTTCTATACCAAGTTA+TGG + chr4.1:18706256-18706275 MS.gene36456:CDS 30.0%
! CATGTGATAGTTTTCAATTG+AGG + chr4.1:18706104-18706123 MS.gene36456:intron 30.0%
! TAAATTGAAGGAAGGTTTTG+AGG + chr4.1:18705150-18705169 MS.gene36456:CDS 30.0%
! TATATGTGGATCATGTTTTC+AGG + chr4.1:18706219-18706238 MS.gene36456:intron 30.0%
! TGATTGGGATGATTTTATAG+TGG + chr4.1:18705216-18705235 MS.gene36456:CDS 30.0%
! TGTTTATTGATAACTGATCC+AGG - chr4.1:18704617-18704636 None:intergenic 30.0%
!! AAATTGAAGGAAGGTTTTGA+GGG + chr4.1:18705151-18705170 MS.gene36456:CDS 30.0%
!! AGCTTGTTTTCTGATATATG+TGG + chr4.1:18706205-18706224 MS.gene36456:intron 30.0%
!! ATTTGGTTTGTCCATATTCA+CGG - chr4.1:18707001-18707020 None:intergenic 30.0%
!!! AAAATTTTTTTAGTGGTCGG+GGG - chr4.1:18706908-18706927 None:intergenic 30.0%
!!! ATTTTAAAATCAAGGACACC+GGG + chr4.1:18705462-18705481 MS.gene36456:intron 30.0%
!!! GTGCAACTTATTTTTGAAAC+GGG + chr4.1:18707092-18707111 MS.gene36456:intron 30.0%
!!! TACCCGTTCTTCTTTTTTTA+TGG + chr4.1:18706486-18706505 MS.gene36456:intron 30.0%
AATGTTACGGTAGATGAACA+TGG + chr4.1:18705067-18705086 MS.gene36456:CDS 35.0%
ACAAACCATAAGGAGGAAAA+TGG + chr4.1:18705702-18705721 MS.gene36456:CDS 35.0%
ACAAGTCTTCCATTTCAAAC+TGG + chr4.1:18705744-18705763 MS.gene36456:CDS 35.0%
ACAATAGTCCATTACTTTGC+CGG + chr4.1:18705617-18705636 MS.gene36456:intron 35.0%
ACAGACTTTGCATGCATAAT+TGG + chr4.1:18707133-18707152 MS.gene36456:intron 35.0%
ACATATCCACCAGTTTGAAA+TGG - chr4.1:18705756-18705775 None:intergenic 35.0%
ATCAAGATCAAACAGTGTCT+TGG - chr4.1:18705496-18705515 None:intergenic 35.0%
ATGAAACCTATCTCCATCAT+TGG + chr4.1:18704729-18704748 MS.gene36456:CDS 35.0%
ATGAACATGGAAGGTCTATT+AGG + chr4.1:18705080-18705099 MS.gene36456:CDS 35.0%
ATTTCACAATACTTTGGCCT+TGG + chr4.1:18704869-18704888 MS.gene36456:CDS 35.0%
CATGTATAGCACTAACACTT+AGG + chr4.1:18706001-18706020 MS.gene36456:intron 35.0%
GAATTGGATCAACTCTATAC+GGG + chr4.1:18705808-18705827 MS.gene36456:CDS 35.0%
GGAATTGGATCAACTCTATA+CGG + chr4.1:18705807-18705826 MS.gene36456:CDS 35.0%
GGTTCTGTCAAGATAATTGA+TGG + chr4.1:18706346-18706365 MS.gene36456:CDS 35.0%
TAAACTAGGCTATTCTGTCA+CGG - chr4.1:18707327-18707346 None:intergenic 35.0%
TAAGGAGCAGAGAATCATTA+TGG - chr4.1:18705960-18705979 None:intergenic 35.0%
TCAATTATCTTGACAGAACC+TGG - chr4.1:18706346-18706365 None:intergenic 35.0%
TCATTTCCAGTTCCATAACT+TGG - chr4.1:18706271-18706290 None:intergenic 35.0%
TCTATACCAAGTTATGGAAC+TGG + chr4.1:18706262-18706281 MS.gene36456:CDS 35.0%
TTACCTATCTCTATACCGAA+AGG - chr4.1:18704932-18704951 None:intergenic 35.0%
TTCTACACGGTGTAAATTGA+AGG + chr4.1:18705138-18705157 MS.gene36456:CDS 35.0%
! AATGATGGAGATAGGTTTCA+TGG - chr4.1:18704730-18704749 None:intergenic 35.0%
! AATGGGACTTTTCTACCTAT+TGG + chr4.1:18706423-18706442 MS.gene36456:intron 35.0%
!! ACACAGTTAAATGGGTTGAT+TGG + chr4.1:18705200-18705219 MS.gene36456:CDS 35.0%
!! CACAGTTAAATGGGTTGATT+GGG + chr4.1:18705201-18705220 MS.gene36456:CDS 35.0%
!! GATTAGATGTCACTTTCTAG+TGG + chr4.1:18705894-18705913 MS.gene36456:intron 35.0%
!! TAGAATGTCTGAAGTGTTGT+TGG - chr4.1:18706468-18706487 None:intergenic 35.0%
!! TGACTTTGTTGTTAGGAGTT+GGG + chr4.1:18707383-18707402 MS.gene36456:intron 35.0%
!! TTGACTTTGTTGTTAGGAGT+TGG + chr4.1:18707382-18707401 MS.gene36456:intron 35.0%
!!! ACTTATTTTTGAAACGGGTG+TGG + chr4.1:18707097-18707116 MS.gene36456:intron 35.0%
AAACTAGGCTATTCTGTCAC+GGG - chr4.1:18707326-18707345 None:intergenic 40.0%
AATCCTGAAGAGATTCCAGA+AGG + chr4.1:18704950-18704969 MS.gene36456:CDS 40.0%
ACACGGTGTAAATTGAAGGA+AGG + chr4.1:18705142-18705161 MS.gene36456:CDS 40.0%
ACTCTGATCATGTTCTTGTG+AGG + chr4.1:18704819-18704838 MS.gene36456:CDS 40.0%
AGAAGGGTTTGAGGACAAAT+GGG + chr4.1:18704967-18704986 MS.gene36456:CDS 40.0%
AGGTCCAAGTTCAAACTTAG+GGG - chr4.1:18704597-18704616 None:intergenic 40.0%
AGTCTTCCATTTCAAACTGG+TGG + chr4.1:18705747-18705766 MS.gene36456:CDS 40.0%
ATCCTGAAGAGATTCCAGAA+GGG + chr4.1:18704951-18704970 MS.gene36456:CDS 40.0%
ATCTCTATACCGAAAGGATC+CGG - chr4.1:18704926-18704945 None:intergenic 40.0%
ATCTTGACAGAACCTGGTTT+AGG - chr4.1:18706340-18706359 None:intergenic 40.0%
ATCTTGCAGCACAAACCATA+AGG + chr4.1:18705692-18705711 MS.gene36456:CDS 40.0%
ATGGTTGTGTTCATGTGAAG+AGG + chr4.1:18705721-18705740 MS.gene36456:CDS 40.0%
ATGTTCATGCCATCGATACA+CGG + chr4.1:18704996-18705015 MS.gene36456:CDS 40.0%
CAAGTTATAGGCCGTGAATA+TGG + chr4.1:18706987-18707006 MS.gene36456:intron 40.0%
CAATAGTCCATTACTTTGCC+GGG + chr4.1:18705618-18705637 MS.gene36456:intron 40.0%
CAGGTCCAAGTTCAAACTTA+GGG - chr4.1:18704598-18704617 None:intergenic 40.0%
CATCAACATTCAGGTGGAAT+TGG + chr4.1:18705792-18705811 MS.gene36456:CDS 40.0%
CTTAAGTAGAGGCTTCTCTT+TGG - chr4.1:18705178-18705197 None:intergenic 40.0%
GATCCTTTCGGTATAGAGAT+AGG + chr4.1:18704926-18704945 MS.gene36456:CDS 40.0%
GATTTGTCTGCGTGAATCTA+GGG - chr4.1:18705387-18705406 None:intergenic 40.0%
GGCTGACAATGCATTAAACT+AGG - chr4.1:18707341-18707360 None:intergenic 40.0%
GTAGTTAACATCTGTGTGTG+TGG - chr4.1:18704786-18704805 None:intergenic 40.0%
GTCTTTCAACAAGCCAATGA+TGG - chr4.1:18704745-18704764 None:intergenic 40.0%
TATGGAACTGGAAATGAAGC+AGG + chr4.1:18706274-18706293 MS.gene36456:CDS 40.0%
TCCACATGTTATCCTAAACC+AGG + chr4.1:18706325-18706344 MS.gene36456:CDS 40.0%
TCTAACTACAACAGCAGCAA+GGG + chr4.1:18706388-18706407 MS.gene36456:CDS 40.0%
TGGAAATGAAGCAGGAAATG+AGG + chr4.1:18706282-18706301 MS.gene36456:CDS 40.0%
TTAAGTGCTATATGCCCTCT+TGG - chr4.1:18704659-18704678 None:intergenic 40.0%
TTACGGTAGATGAACATGGA+AGG + chr4.1:18705071-18705090 MS.gene36456:CDS 40.0%
! AACAAGCCAATGATGGAGAT+AGG - chr4.1:18704738-18704757 None:intergenic 40.0%
! ACCTGGTTTAGGATAACATG+TGG - chr4.1:18706329-18706348 None:intergenic 40.0%
! ACTGGTGGATATGTGATCTA+TGG + chr4.1:18705762-18705781 MS.gene36456:CDS 40.0%
! CACAACCATTTTCCTCCTTA+TGG - chr4.1:18705710-18705729 None:intergenic 40.0%
! TAGGTTTCATGGAGAGGTAT+AGG - chr4.1:18704719-18704738 None:intergenic 40.0%
! TGATTTGTCTGCGTGAATCT+AGG - chr4.1:18705388-18705407 None:intergenic 40.0%
!! GTCTGAAGTGTTGTTGGTAT+GGG - chr4.1:18706462-18706481 None:intergenic 40.0%
!! TGTCTGAAGTGTTGTTGGTA+TGG - chr4.1:18706463-18706482 None:intergenic 40.0%
!! TGTGGATCATGTTTTCAGGA+TGG + chr4.1:18706223-18706242 MS.gene36456:intron 40.0%
AAAATCAAGGACACCGGGTT+TGG + chr4.1:18705467-18705486 MS.gene36456:intron 45.0%
ACCGAAAGGATCCGGAATAT+CGG - chr4.1:18704918-18704937 None:intergenic 45.0%
ACCGATATTCCGGATCCTTT+CGG + chr4.1:18704914-18704933 MS.gene36456:CDS 45.0%
AGAGATTCCAGAAGGGTTTG+AGG + chr4.1:18704958-18704977 MS.gene36456:CDS 45.0%
AGTGTCTTGGATTCCAAACC+CGG - chr4.1:18705483-18705502 None:intergenic 45.0%
CAAGTTGCTCACCATATACC+CGG - chr4.1:18705639-18705658 None:intergenic 45.0%
CAGAAGGGTTTGAGGACAAA+TGG + chr4.1:18704966-18704985 MS.gene36456:CDS 45.0%
CATGTTCTTGTGAGGAACAG+TGG + chr4.1:18704827-18704846 MS.gene36456:CDS 45.0%
CATTTGTCCTCAAACCCTTC+TGG - chr4.1:18704968-18704987 None:intergenic 45.0%
CCAGGTCCAAGTTCAAACTT+AGG - chr4.1:18704599-18704618 None:intergenic 45.0%
CCATATACCCGGCAAAGTAA+TGG - chr4.1:18705628-18705647 None:intergenic 45.0%
CCATTACTTTGCCGGGTATA+TGG + chr4.1:18705625-18705644 MS.gene36456:intron 45.0%
CCTAAGTTTGAACTTGGACC+TGG + chr4.1:18704596-18704615 MS.gene36456:CDS 45.0%
CTAACTACAACAGCAGCAAG+GGG + chr4.1:18706389-18706408 MS.gene36456:CDS 45.0%
CTGTCCCCTAAGTTTGAACT+TGG + chr4.1:18704590-18704609 MS.gene36456:CDS 45.0%
GAACTCAGACCATGATTGCA+AGG + chr4.1:18705303-18705322 MS.gene36456:CDS 45.0%
GTCTAACTACAACAGCAGCA+AGG + chr4.1:18706387-18706406 MS.gene36456:CDS 45.0%
GTTGCTCATCAACATTCAGG+TGG + chr4.1:18705786-18705805 MS.gene36456:CDS 45.0%
TGGAGATAGGTTTCATGGAG+AGG - chr4.1:18704725-18704744 None:intergenic 45.0%
TGTTCATGCCATCGATACAC+GGG + chr4.1:18704997-18705016 MS.gene36456:CDS 45.0%
TTCGAGTGTCTGACACATGT+TGG + chr4.1:18706036-18706055 MS.gene36456:intron 45.0%
TTGCAGCACAAACCATAAGG+AGG + chr4.1:18705695-18705714 MS.gene36456:CDS 45.0%
! AAGTGGAGTGTCATGGAACA+TGG + chr4.1:18706560-18706579 MS.gene36456:intron 45.0%
! GGAACATAAGTGGAGTGTCA+TGG + chr4.1:18706553-18706572 MS.gene36456:intron 45.0%
! GGGACTTTTCTACCTATTGG+TGG + chr4.1:18706426-18706445 MS.gene36456:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr4.1:18706848-18706867 MS.gene36456:intron 45.0%
!! AACCCTTCTGGAATCTCTTC+AGG - chr4.1:18704956-18704975 None:intergenic 45.0%
!! GCTGAAGTAGTTGATGATGC+TGG + chr4.1:18704689-18704708 MS.gene36456:CDS 45.0%
!! GGTGTTGCTCATCAACATTC+AGG + chr4.1:18705783-18705802 MS.gene36456:CDS 45.0%
!!! AAAAAAAAAAATTTTTTTAG+TGG - chr4.1:18706915-18706934 None:intergenic 5.0%
CGGGTATATGGTGAGCAACT+TGG + chr4.1:18705637-18705656 MS.gene36456:intron 50.0%
GGAGTTGTTCTGCCACCAAT+AGG - chr4.1:18706441-18706460 None:intergenic 50.0%
GGGGGGCAGAGGATAAATTA+GGG + chr4.1:18705017-18705036 MS.gene36456:CDS 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + chr4.1:18706847-18706866 MS.gene36456:intron 50.0%
GTTCATGCCATCGATACACG+GGG + chr4.1:18704998-18705017 MS.gene36456:CDS 50.0%
TAGGCTATTCTGTCACGGGA+CGG - chr4.1:18707322-18707341 None:intergenic 50.0%
TGGAACAGCGACCGATATTC+CGG + chr4.1:18704904-18704923 MS.gene36456:CDS 50.0%
TGGATCAACTCTATACGGGC+AGG + chr4.1:18705812-18705831 MS.gene36456:CDS 50.0%
TTCATGCCATCGATACACGG+GGG + chr4.1:18704999-18705018 MS.gene36456:CDS 50.0%
TTCCACGTGTTTCGGATCCA+AGG - chr4.1:18704889-18704908 None:intergenic 50.0%
! AAGGGGCACACTGGAGTAAT+GGG + chr4.1:18706406-18706425 MS.gene36456:intron 50.0%
CCAACTGAGCTAAGCTCACG+AGG - chr4.1:18706846-18706865 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr4.1:18706843-18706862 MS.gene36456:intron 55.0%
CGGGGGGCAGAGGATAAATT+AGG + chr4.1:18705016-18705035 MS.gene36456:CDS 55.0%
CTGAGCTAAGCTCACGAGGA+CGG - chr4.1:18706842-18706861 None:intergenic 55.0%
GAGGAACAGTGGCATATGCC+AGG + chr4.1:18704838-18704857 MS.gene36456:CDS 55.0%
GGTCGCTGTTCCACGTGTTT+CGG - chr4.1:18704897-18704916 None:intergenic 55.0%
TCATGCCATCGATACACGGG+GGG + chr4.1:18705000-18705019 MS.gene36456:CDS 55.0%
TGAGCTAAGCTCACGAGGAC+GGG - chr4.1:18706841-18706860 None:intergenic 55.0%
! CAAGGGGCACACTGGAGTAA+TGG + chr4.1:18706405-18706424 MS.gene36456:intron 55.0%
GGCCTTGGATCCGAAACACG+TGG + chr4.1:18704884-18704903 MS.gene36456:CDS 60.0%
TCTGTCACGGGACGGCTATC+TGG - chr4.1:18707314-18707333 None:intergenic 60.0%
! AACAGCAGCAAGGGGCACAC+TGG + chr4.1:18706397-18706416 MS.gene36456:CDS 60.0%
!! AAGCTCACGAGGACGGGTTG+TGG - chr4.1:18706835-18706854 None:intergenic 60.0%
CATCGATACACGGGGGGCAG+AGG + chr4.1:18705006-18705025 MS.gene36456:CDS 65.0%
CTCTGCCCCCCGTGTATCGA+TGG - chr4.1:18705008-18705027 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 18704473 18707418 18704473 ID=MS.gene36456
chr4.1 mRNA 18704473 18707418 18704473 ID=MS.gene36456.t1;Parent=MS.gene36456
chr4.1 exon 18704473 18705324 18704473 ID=MS.gene36456.t1.exon1;Parent=MS.gene36456.t1
chr4.1 CDS 18704473 18705324 18704473 ID=cds.MS.gene36456.t1;Parent=MS.gene36456.t1
chr4.1 exon 18705675 18705833 18705675 ID=MS.gene36456.t1.exon2;Parent=MS.gene36456.t1
chr4.1 CDS 18705675 18705833 18705675 ID=cds.MS.gene36456.t1;Parent=MS.gene36456.t1
chr4.1 exon 18706241 18706420 18706241 ID=MS.gene36456.t1.exon3;Parent=MS.gene36456.t1
chr4.1 CDS 18706241 18706420 18706241 ID=cds.MS.gene36456.t1;Parent=MS.gene36456.t1
chr4.1 exon 18707398 18707418 18707398 ID=MS.gene36456.t1.exon4;Parent=MS.gene36456.t1
chr4.1 CDS 18707398 18707418 18707398 ID=cds.MS.gene36456.t1;Parent=MS.gene36456.t1
Gene Sequence

>MS.gene36456

ATGTGTTTTGTATCTAGAGATTTTGTATTTTTAGTGGCAATACTTCTACTATTGTTTGGTACAACATGCTCAAGTTCTTTTGTGAATGCCGAAGATAAAATAAAATCAGCTGTTTTTCTGTCCCCTAAGTTTGAACTTGGACCTGGATCAGTTATCAATAAACATTATTATGATATTGATTTTCCAAGAGGGCATATAGCACTTAAGAGTTTCAATGCTGAAGTAGTTGATGATGCTGGTAATCCTATACCTCTCCATGAAACCTATCTCCATCATTGGCTTGTTGAAAGACATTATCAAAGAAAATATGCCACACACACAGATGTTAACTACATGATGCTTCAAAACTCTGATCATGTTCTTGTGAGGAACAGTGGCATATGCCAGGAGAATGTTATTTCACAATACTTTGGCCTTGGATCCGAAACACGTGGAACAGCGACCGATATTCCGGATCCTTTCGGTATAGAGATAGGTAATCCTGAAGAGATTCCAGAAGGGTTTGAGGACAAATGGGTGCTTAATGTTCATGCCATCGATACACGGGGGGCAGAGGATAAATTAGGGTGCACTGAATGTAAGTGTGACCTTTATAATGTTACGGTAGATGAACATGGAAGGTCTATTAGGTCAAATTATAAAGGAGGTTTGTTATGTTGTTATGATTCTACACGGTGTAAATTGAAGGAAGGTTTTGAGGGTCCAAAGAGAAGCCTCTACTTAAGATACACAGTTAAATGGGTTGATTGGGATGATTTTATAGTGGCTGTTAAGATATATATAATTGATGTGACTGATACTTTGAAACTATCAGATGATTCAAAAGGAATGAACTCAGACCATGATTGCAAGGTAAATGAATTCATTATGAAACATTAGTTTTTAGAAATAGATTTCGTATAGTTGGGCTACCCTAGATTCACGCAGACAAATCATATGTGAATGACGGATCAAGATCAAAAAGTTCACAAAATATTTAGCTTTTGATTATTTTAAAATCAAGGACACCGGGTTTGGAATCCAAGACACTGTTTGATCTTGATCCAACAGTCATTAATGTGCTTATTGCGTGTATGTAAAGTCTTTCGACTGCAGAGAATCCTTATTTGTAGTTTTTGTCAACTCAATTTTACCCTAAAACATAACAATAGTCCATTACTTTGCCGGGTATATGGTGAGCAACTTGGATTTTTTTGTTTCAGGTTGAATATCAAGTTGAATCTTGCAGCACAAACCATAAGGAGGAAAATGGTTGTGTTCATGTGAAGAGGACAAGTCTTCCATTTCAAACTGGTGGATATGTGATCTATGGTGTTGCTCATCAACATTCAGGTGGAATTGGATCAACTCTATACGGGCAGGTAATTTACAGTTTTCAATTGCAACAGTTAGCTACAAGTTACAGCAAAATATTTTGATTTGATTAGATGTCACTTTCTAGTGGCATAAGTTTATTCAAAAAAGAAATCATTGAAGGATCTAATCCATAATGATTCTCTGCTCCTTAAGAGAGACTCTCAATTTACATCATGTATAGCACTAACACTTAGGATTAAAGATGTGTTCGAGTGTCTGACACATGTTGGACACCGAGACACATTTGTGACTAAATATAATCACTTCTATTTGTTCATGTGATAGTTTTCAATTGAGGCTAACAAATGCTTTCATTAACAAGAAAAAGGTGAATAGTAGCTTGATTAAGAAGTTAAATATGGCATAATAGATTAATAGCTTGTTTTCTGATATATGTGGATCATGTTTTCAGGATGGCAGAGTTATATGTTCTTCTATACCAAGTTATGGAACTGGAAATGAAGCAGGAAATGAGGCAAACTATATTGTAGGAATGTCCACATGTTATCCTAAACCAGGTTCTGTCAAGATAATTGATGGTGAGACTTTGATTCTAGTGTCTAACTACAACAGCAGCAAGGGGCACACTGGAGTAATGGGACTTTTCTACCTATTGGTGGCAGAACAACTCCCATACCAACAACACTTCAGACATTCTACCCGTTCTTCTTTTTTTATGGATATAAATAACATGCTTTTAGATAATTAGTAACATATATATATAGGAACATAAGTGGAGTGTCATGGAACATGGATAGTATCGAAATAATATATGATTGATCGATCAAAGTGGAATAAAGACAAGATTGGGAAGTGTGACTGAATACTACAGTGCTACTATGTGATGTTGTTTTAGTGATATATGTAGTTAATTACTACTATTTTTGTCTTAATTCACTCTTTAGTGTATCATATGGCTTTGTGATAAGTTTGTTGTAACGTATAGCTGCTTAATGTAAAAGGGAATTGCTTAGTATGAAACTTATCAGTTTTTATCAGATTGCCACAACCCGTCCTCGTGAGCTTAGCTCAGTTGGTAGGGACAATGTATAATATATGTAAGGTACGGGGTTCAACCCCCGACCACTAAAAAAATTTTTTTTTTTGCAACAACCCATAAGCTATGCATGTTTTTTTGTGTTTTGATGTTACACATCACAAGTTATAGGCCGTGAATATGGACAAACCAAATATGGTTTAATATTTGAATTGAAATGAAGAATGTTTGGAAGTTGCCTCAAACATTTGAAACGAACTTGCTAAGTGCAACTTATTTTTGAAACGGGTGTGGCTTGATCTCTATAACAGACTTTGCATGCATAATTGGTTTCCTAAAAATCGTAGTATTGTATGTATATACTGATTTTATTTACCCTTGTAGAAAAAATTGTTAGAATTTAATTAATTAATTAATTAATTAATTTATATAAACTCAAGTGGCTAGTATATATGATAACCTGATATGAAGAATGTCTTCTTCAACCAGATAGCCGTCCCGTGACAGAATAGCCTAGTTTAATGCATTGTCAGCCTTGTTTTCTAACCTATATTGTTTGACTTTGTTGTTAGGAGTTGGGACCACAATGCTAG

Protein sequence

>MS.gene36456.t1

MCFVSRDFVFLVAILLLLFGTTCSSSFVNAEDKIKSAVFLSPKFELGPGSVINKHYYDIDFPRGHIALKSFNAEVVDDAGNPIPLHETYLHHWLVERHYQRKYATHTDVNYMMLQNSDHVLVRNSGICQENVISQYFGLGSETRGTATDIPDPFGIEIGNPEEIPEGFEDKWVLNVHAIDTRGAEDKLGCTECKCDLYNVTVDEHGRSIRSNYKGGLLCCYDSTRCKLKEGFEGPKRSLYLRYTVKWVDWDDFIVAVKIYIIDVTDTLKLSDDSKGMNSDHDCKVEYQVESCSTNHKEENGCVHVKRTSLPFQTGGYVIYGVAHQHSGGIGSTLYGQDGRVICSSIPSYGTGNEAGNEANYIVGMSTCYPKPGSVKIIDGETLILVSNYNSSKGHTGELGPQC