Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36456.t1 | XP_013457318.1 | 90.3 | 401 | 38 | 1 | 1 | 400 | 1 | 401 | 3.90E-217 | 763.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36456.t1 | A0A072UNJ1 | 90.3 | 401 | 38 | 1 | 1 | 400 | 1 | 401 | 2.8e-217 | 763.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051368 | MS.gene36456 | 0.818524 | 1.87E-52 | -1.69E-46 |
| MS.gene057156 | MS.gene36456 | -0.80277 | 4.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36456.t1 | MTR_4g094555 | 90.274 | 401 | 38 | 1 | 1 | 400 | 1 | 401 | 0.0 | 753 |
| MS.gene36456.t1 | MTR_4g094548 | 84.119 | 403 | 61 | 3 | 1 | 400 | 1 | 403 | 0.0 | 699 |
| MS.gene36456.t1 | MTR_4g094570 | 81.796 | 401 | 72 | 1 | 1 | 400 | 1 | 401 | 0.0 | 692 |
| MS.gene36456.t1 | MTR_4g094562 | 82.045 | 401 | 71 | 1 | 1 | 400 | 1 | 401 | 0.0 | 682 |
| MS.gene36456.t1 | MTR_4g094550 | 81.095 | 402 | 74 | 2 | 1 | 400 | 1 | 402 | 0.0 | 678 |
| MS.gene36456.t1 | MTR_4g094560 | 81.500 | 400 | 65 | 1 | 1 | 400 | 1 | 391 | 0.0 | 666 |
| MS.gene36456.t1 | MTR_6g048350 | 76.808 | 401 | 92 | 1 | 1 | 400 | 1 | 401 | 0.0 | 654 |
| MS.gene36456.t1 | MTR_6g048310 | 75.628 | 398 | 93 | 1 | 3 | 400 | 2 | 395 | 0.0 | 625 |
| MS.gene36456.t1 | MTR_4g094565 | 67.750 | 400 | 49 | 2 | 1 | 400 | 1 | 320 | 0.0 | 516 |
| MS.gene36456.t1 | MTR_1g052640 | 59.901 | 404 | 151 | 4 | 1 | 400 | 1 | 397 | 0.0 | 516 |
| MS.gene36456.t1 | MTR_2g030460 | 58.663 | 404 | 156 | 4 | 1 | 400 | 1 | 397 | 0.0 | 512 |
| MS.gene36456.t1 | MTR_2g030470 | 61.097 | 401 | 146 | 3 | 3 | 400 | 6 | 399 | 2.37e-178 | 518 |
| MS.gene36456.t1 | MTR_2g030470 | 59.305 | 403 | 154 | 3 | 1 | 400 | 416 | 811 | 1.36e-173 | 506 |
| MS.gene36456.t1 | MTR_0083s0100 | 61.290 | 372 | 136 | 2 | 30 | 400 | 33 | 397 | 5.44e-178 | 502 |
| MS.gene36456.t1 | MTR_4g094562 | 78.041 | 296 | 64 | 1 | 1 | 295 | 1 | 296 | 2.30e-170 | 479 |
| MS.gene36456.t1 | MTR_2g030480 | 57.568 | 403 | 141 | 4 | 1 | 400 | 1 | 376 | 2.69e-167 | 474 |
| MS.gene36456.t1 | MTR_4g094565 | 76.140 | 285 | 41 | 1 | 1 | 285 | 1 | 258 | 1.39e-150 | 429 |
| MS.gene36456.t1 | MTR_1g052640 | 58.944 | 341 | 129 | 4 | 1 | 337 | 1 | 334 | 2.32e-149 | 427 |
| MS.gene36456.t1 | MTR_2g030460 | 56.891 | 341 | 136 | 4 | 1 | 337 | 1 | 334 | 4.41e-148 | 423 |
| MS.gene36456.t1 | MTR_8g039300 | 44.500 | 400 | 200 | 7 | 1 | 391 | 1 | 387 | 4.47e-127 | 372 |
| MS.gene36456.t1 | MTR_1g052640 | 58.131 | 289 | 110 | 4 | 1 | 285 | 1 | 282 | 3.50e-123 | 358 |
| MS.gene36456.t1 | MTR_6g089930 | 41.855 | 399 | 212 | 6 | 1 | 391 | 1 | 387 | 1.44e-121 | 358 |
| MS.gene36456.t1 | MTR_6g090090 | 42.356 | 399 | 200 | 7 | 1 | 391 | 27 | 403 | 2.06e-118 | 351 |
| MS.gene36456.t1 | MTR_3g035040 | 43.000 | 400 | 206 | 7 | 1 | 391 | 1 | 387 | 7.30e-118 | 349 |
| MS.gene36456.t1 | MTR_1g035220 | 41.071 | 392 | 188 | 8 | 1 | 383 | 1 | 358 | 1.55e-106 | 318 |
| MS.gene36456.t1 | MTR_1g062750 | 40.336 | 238 | 128 | 4 | 58 | 286 | 2 | 234 | 8.38e-65 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36456.t1 | AT5G61820 | 55.172 | 406 | 160 | 6 | 10 | 400 | 10 | 408 | 9.13e-160 | 458 |
| MS.gene36456.t1 | AT5G61820 | 55.172 | 406 | 160 | 6 | 10 | 400 | 10 | 408 | 9.13e-160 | 458 |
Find 93 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAAGATACACAGTTAAA+TGG | 0.194648 | 4.1:+18705191 | MS.gene36456:CDS |
| AACCCTTCTGGAATCTCTTC+AGG | 0.298573 | 4.1:-18704953 | None:intergenic |
| GGTCGCTGTTCCACGTGTTT+CGG | 0.306179 | 4.1:-18704894 | None:intergenic |
| CATTTGTCCTCAAACCCTTC+TGG | 0.306749 | 4.1:-18704965 | None:intergenic |
| CATCAACATTCAGGTGGAAT+TGG | 0.323134 | 4.1:+18705792 | MS.gene36456:CDS |
| GGAATTGGATCAACTCTATA+CGG | 0.323756 | 4.1:+18705807 | MS.gene36456:CDS |
| ACACAGTTAAATGGGTTGAT+TGG | 0.350890 | 4.1:+18705200 | MS.gene36456:CDS |
| CTGTCCCCTAAGTTTGAACT+TGG | 0.351190 | 4.1:+18704590 | MS.gene36456:CDS |
| ACCGATATTCCGGATCCTTT+CGG | 0.371967 | 4.1:+18704914 | MS.gene36456:CDS |
| CTTAAGTAGAGGCTTCTCTT+TGG | 0.373052 | 4.1:-18705175 | None:intergenic |
| CAGAAGGGTTTGAGGACAAA+TGG | 0.373646 | 4.1:+18704966 | MS.gene36456:CDS |
| ACAAACCATAAGGAGGAAAA+TGG | 0.374430 | 4.1:+18705702 | MS.gene36456:CDS |
| GCAATACTTCTACTATTGTT+TGG | 0.376913 | 4.1:+18704509 | MS.gene36456:CDS |
| ATTTCACAATACTTTGGCCT+TGG | 0.380830 | 4.1:+18704869 | MS.gene36456:CDS |
| CACAGTTAAATGGGTTGATT+GGG | 0.382104 | 4.1:+18705201 | MS.gene36456:CDS |
| ATCTTGACAGAACCTGGTTT+AGG | 0.385522 | 4.1:-18706337 | None:intergenic |
| GGTGTTGCTCATCAACATTC+AGG | 0.386508 | 4.1:+18705783 | MS.gene36456:CDS |
| TGGAACAGCGACCGATATTC+CGG | 0.386546 | 4.1:+18704904 | MS.gene36456:CDS |
| ATTCATTTACCTTGCAATCA+TGG | 0.389066 | 4.1:-18705312 | None:intergenic |
| CATCTACCGTAACATTATAA+AGG | 0.393321 | 4.1:-18705060 | None:intergenic |
| TAGGTTTCATGGAGAGGTAT+AGG | 0.398215 | 4.1:-18704716 | None:intergenic |
| TGTTCTTCTATACCAAGTTA+TGG | 0.408649 | 4.1:+18706256 | MS.gene36456:CDS |
| AACAAGCCAATGATGGAGAT+AGG | 0.411590 | 4.1:-18704735 | None:intergenic |
| AATGATGGAGATAGGTTTCA+TGG | 0.414097 | 4.1:-18704727 | None:intergenic |
| TCTATTAGGTCAAATTATAA+AGG | 0.420274 | 4.1:+18705094 | MS.gene36456:CDS |
| TCTATACCAAGTTATGGAAC+TGG | 0.424145 | 4.1:+18706262 | MS.gene36456:CDS |
| CTTAAGATACACAGTTAAAT+GGG | 0.432170 | 4.1:+18705192 | MS.gene36456:CDS |
| AATGAGGCAAACTATATTGT+AGG | 0.434805 | 4.1:+18706298 | MS.gene36456:CDS |
| AATGTTATTTCACAATACTT+TGG | 0.442468 | 4.1:+18704863 | MS.gene36456:CDS |
| ACTGGTGGATATGTGATCTA+TGG | 0.444549 | 4.1:+18705762 | MS.gene36456:CDS |
| TCATTTCCAGTTCCATAACT+TGG | 0.445096 | 4.1:-18706268 | None:intergenic |
| ACCGAAAGGATCCGGAATAT+CGG | 0.445892 | 4.1:-18704915 | None:intergenic |
| ATGAACATGGAAGGTCTATT+AGG | 0.448357 | 4.1:+18705080 | MS.gene36456:CDS |
| AGAGATTCCAGAAGGGTTTG+AGG | 0.448379 | 4.1:+18704958 | MS.gene36456:CDS |
| TGACTTTGTTGTTAGGAGTT+GGG | 0.449783 | 4.1:+18707383 | MS.gene36456:intron |
| ACATATCCACCAGTTTGAAA+TGG | 0.452253 | 4.1:-18705753 | None:intergenic |
| AAACTATCAGATGATTCAAA+AGG | 0.461623 | 4.1:+18705277 | MS.gene36456:CDS |
| TTAAGTGCTATATGCCCTCT+TGG | 0.461718 | 4.1:-18704656 | None:intergenic |
| CCTAAGTTTGAACTTGGACC+TGG | 0.465219 | 4.1:+18704596 | MS.gene36456:CDS |
| ATCTCTATACCGAAAGGATC+CGG | 0.465291 | 4.1:-18704923 | None:intergenic |
| GATCCTTTCGGTATAGAGAT+AGG | 0.466983 | 4.1:+18704926 | MS.gene36456:CDS |
| TCAATTATCTTGACAGAACC+TGG | 0.470885 | 4.1:-18706343 | None:intergenic |
| ACAAGTCTTCCATTTCAAAC+TGG | 0.476738 | 4.1:+18705744 | MS.gene36456:CDS |
| CCAGGTCCAAGTTCAAACTT+AGG | 0.478184 | 4.1:-18704596 | None:intergenic |
| GGTTCTGTCAAGATAATTGA+TGG | 0.487432 | 4.1:+18706346 | MS.gene36456:CDS |
| ATGAAACCTATCTCCATCAT+TGG | 0.488855 | 4.1:+18704729 | MS.gene36456:CDS |
| GTGTGACCTTTATAATGTTA+CGG | 0.489855 | 4.1:+18705054 | MS.gene36456:CDS |
| CAGGTCCAAGTTCAAACTTA+GGG | 0.493018 | 4.1:-18704595 | None:intergenic |
| TGTTTATTGATAACTGATCC+AGG | 0.496378 | 4.1:-18704614 | None:intergenic |
| TTCTACACGGTGTAAATTGA+AGG | 0.497869 | 4.1:+18705138 | MS.gene36456:CDS |
| GTCTTTCAACAAGCCAATGA+TGG | 0.504006 | 4.1:-18704742 | None:intergenic |
| AGAAGGGTTTGAGGACAAAT+GGG | 0.513516 | 4.1:+18704967 | MS.gene36456:CDS |
| ATCTTGCAGCACAAACCATA+AGG | 0.514953 | 4.1:+18705692 | MS.gene36456:CDS |
| TATGGAACTGGAAATGAAGC+AGG | 0.523961 | 4.1:+18706274 | MS.gene36456:CDS |
| TTCCACGTGTTTCGGATCCA+AGG | 0.534319 | 4.1:-18704886 | None:intergenic |
| AGTCTTCCATTTCAAACTGG+TGG | 0.536429 | 4.1:+18705747 | MS.gene36456:CDS |
| GAGGAACAGTGGCATATGCC+AGG | 0.537970 | 4.1:+18704838 | MS.gene36456:CDS |
| TGTTCATGCCATCGATACAC+GGG | 0.542757 | 4.1:+18704997 | MS.gene36456:CDS |
| TAACTGTGTATCTTAAGTAG+AGG | 0.548989 | 4.1:-18705186 | None:intergenic |
| ATTAGGTCAAATTATAAAGG+AGG | 0.549423 | 4.1:+18705097 | MS.gene36456:CDS |
| TGGAAATGAAGCAGGAAATG+AGG | 0.550055 | 4.1:+18706282 | MS.gene36456:CDS |
| TCTAACTACAACAGCAGCAA+GGG | 0.551112 | 4.1:+18706388 | MS.gene36456:CDS |
| ATGTTCATGCCATCGATACA+CGG | 0.551421 | 4.1:+18704996 | MS.gene36456:CDS |
| ATTGTGAAATAACATTCTCC+TGG | 0.553065 | 4.1:-18704856 | None:intergenic |
| AACAGCAGCAAGGGGCACAC+TGG | 0.559463 | 4.1:+18706397 | MS.gene36456:CDS |
| TGGATCAACTCTATACGGGC+AGG | 0.560753 | 4.1:+18705812 | MS.gene36456:CDS |
| ACACGGTGTAAATTGAAGGA+AGG | 0.579319 | 4.1:+18705142 | MS.gene36456:CDS |
| GTCTAACTACAACAGCAGCA+AGG | 0.581714 | 4.1:+18706387 | MS.gene36456:CDS |
| TGGAGATAGGTTTCATGGAG+AGG | 0.587595 | 4.1:-18704722 | None:intergenic |
| GAATTGGATCAACTCTATAC+GGG | 0.589113 | 4.1:+18705808 | MS.gene36456:CDS |
| GAACTCAGACCATGATTGCA+AGG | 0.595058 | 4.1:+18705303 | MS.gene36456:CDS |
| GGCCTTGGATCCGAAACACG+TGG | 0.606081 | 4.1:+18704884 | MS.gene36456:CDS |
| GCTGAAGTAGTTGATGATGC+TGG | 0.614547 | 4.1:+18704689 | MS.gene36456:CDS |
| ATGGTTGTGTTCATGTGAAG+AGG | 0.619686 | 4.1:+18705721 | MS.gene36456:CDS |
| ACTCTGATCATGTTCTTGTG+AGG | 0.633094 | 4.1:+18704819 | MS.gene36456:CDS |
| TCCACATGTTATCCTAAACC+AGG | 0.633112 | 4.1:+18706325 | MS.gene36456:CDS |
| AATCCTGAAGAGATTCCAGA+AGG | 0.639599 | 4.1:+18704950 | MS.gene36456:CDS |
| TTACCTATCTCTATACCGAA+AGG | 0.640325 | 4.1:-18704929 | None:intergenic |
| ACCTGGTTTAGGATAACATG+TGG | 0.643141 | 4.1:-18706326 | None:intergenic |
| AATGTTACGGTAGATGAACA+TGG | 0.647349 | 4.1:+18705067 | MS.gene36456:CDS |
| CATGTTCTTGTGAGGAACAG+TGG | 0.650998 | 4.1:+18704827 | MS.gene36456:CDS |
| GTTGCTCATCAACATTCAGG+TGG | 0.654778 | 4.1:+18705786 | MS.gene36456:CDS |
| CAATCATGAAACTAGCATTG+TGG | 0.656878 | 4.1:-18707407 | None:intergenic |
| ATCCTGAAGAGATTCCAGAA+GGG | 0.660203 | 4.1:+18704951 | MS.gene36456:CDS |
| TTACGGTAGATGAACATGGA+AGG | 0.664360 | 4.1:+18705071 | MS.gene36456:CDS |
| GTAGTTAACATCTGTGTGTG+TGG | 0.668250 | 4.1:-18704783 | None:intergenic |
| TTGCAGCACAAACCATAAGG+AGG | 0.679495 | 4.1:+18705695 | MS.gene36456:CDS |
| CTAACTACAACAGCAGCAAG+GGG | 0.685180 | 4.1:+18706389 | MS.gene36456:CDS |
| TATGTTGTTATGATTCTACA+CGG | 0.698305 | 4.1:+18705125 | MS.gene36456:CDS |
| GTTCATGCCATCGATACACG+GGG | 0.700269 | 4.1:+18704998 | MS.gene36456:CDS |
| AGGTCCAAGTTCAAACTTAG+GGG | 0.710834 | 4.1:-18704594 | None:intergenic |
| TCATGCCATCGATACACGGG+GGG | 0.721292 | 4.1:+18705000 | MS.gene36456:CDS |
| TTCATGCCATCGATACACGG+GGG | 0.740248 | 4.1:+18704999 | MS.gene36456:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGTAACATATATATAT+AGG | + | chr4.1:18706532-18706551 | MS.gene36456:intron | 10.0% |
| !!! | TTTTGATTATTTTAAAATCA+AGG | + | chr4.1:18705454-18705473 | MS.gene36456:intron | 10.0% |
| !! | TTAATTTATATAAACTCAAG+TGG | + | chr4.1:18707246-18707265 | MS.gene36456:intron | 15.0% |
| !! | TTCAAATATTAAACCATATT+TGG | - | chr4.1:18707018-18707037 | None:intergenic | 15.0% |
| !!! | AAAAAAATTTTTTTAGTGGT+CGG | - | chr4.1:18706911-18706930 | None:intergenic | 15.0% |
| !! | CTTGATTAAGAAGTTAAATA+TGG | + | chr4.1:18706168-18706187 | MS.gene36456:intron | 20.0% |
| !! | GACAATGTATAATATATGTA+AGG | + | chr4.1:18706870-18706889 | MS.gene36456:intron | 20.0% |
| !! | TATATATATAGGAACATAAG+TGG | + | chr4.1:18706543-18706562 | MS.gene36456:intron | 20.0% |
| !! | TATCCATAAAAAAAGAAGAA+CGG | - | chr4.1:18706492-18706511 | None:intergenic | 20.0% |
| !! | TCTATTAGGTCAAATTATAA+AGG | + | chr4.1:18705094-18705113 | MS.gene36456:CDS | 20.0% |
| !! | TGTATAATATATGTAAGGTA+CGG | + | chr4.1:18706875-18706894 | MS.gene36456:intron | 20.0% |
| !! | TTCAAAAAAGAAATCATTGA+AGG | + | chr4.1:18705927-18705946 | MS.gene36456:intron | 20.0% |
| !!! | AAAAAATTTTTTTAGTGGTC+GGG | - | chr4.1:18706910-18706929 | None:intergenic | 20.0% |
| !!! | AATGTTATTTCACAATACTT+TGG | + | chr4.1:18704863-18704882 | MS.gene36456:CDS | 20.0% |
| !!! | AGCTGATTTTATTTTATCTT+CGG | - | chr4.1:18704564-18704583 | None:intergenic | 20.0% |
| !!! | TAGAGATTTTGTATTTTTAG+TGG | + | chr4.1:18704487-18704506 | MS.gene36456:CDS | 20.0% |
| !!! | TCTAACAATTTTTTCTACAA+GGG | - | chr4.1:18707204-18707223 | None:intergenic | 20.0% |
| !!! | TTCTAACAATTTTTTCTACA+AGG | - | chr4.1:18707205-18707224 | None:intergenic | 20.0% |
| ! | AAAAAAACATGCATAGCTTA+TGG | - | chr4.1:18706946-18706965 | None:intergenic | 25.0% |
| ! | AAAAAACATGCATAGCTTAT+GGG | - | chr4.1:18706945-18706964 | None:intergenic | 25.0% |
| ! | AAACTATCAGATGATTCAAA+AGG | + | chr4.1:18705277-18705296 | MS.gene36456:CDS | 25.0% |
| ! | ACAACAAAGTCAAACAATAT+AGG | - | chr4.1:18707375-18707394 | None:intergenic | 25.0% |
| ! | ACAATATAGGTTAGAAAACA+AGG | - | chr4.1:18707362-18707381 | None:intergenic | 25.0% |
| ! | ACTTAAGATACACAGTTAAA+TGG | + | chr4.1:18705191-18705210 | MS.gene36456:CDS | 25.0% |
| ! | AGAAATAGATTTCGTATAGT+TGG | + | chr4.1:18705357-18705376 | MS.gene36456:intron | 25.0% |
| ! | ATCCATAAAAAAAGAAGAAC+GGG | - | chr4.1:18706491-18706510 | None:intergenic | 25.0% |
| ! | ATTAGGTCAAATTATAAAGG+AGG | + | chr4.1:18705097-18705116 | MS.gene36456:CDS | 25.0% |
| ! | CTTAAGATACACAGTTAAAT+GGG | + | chr4.1:18705192-18705211 | MS.gene36456:CDS | 25.0% |
| ! | GAAATAGATTTCGTATAGTT+GGG | + | chr4.1:18705358-18705377 | MS.gene36456:intron | 25.0% |
| ! | GAATTGAAATGAAGAATGTT+TGG | + | chr4.1:18707035-18707054 | MS.gene36456:intron | 25.0% |
| ! | GTATAATATATGTAAGGTAC+GGG | + | chr4.1:18706876-18706895 | MS.gene36456:intron | 25.0% |
| ! | GTTGACAAAAACTACAAATA+AGG | - | chr4.1:18705576-18705595 | None:intergenic | 25.0% |
| ! | TATAATATATGTAAGGTACG+GGG | + | chr4.1:18706877-18706896 | MS.gene36456:intron | 25.0% |
| ! | TATAGCTGCTTAATGTAAAA+GGG | + | chr4.1:18706770-18706789 | MS.gene36456:intron | 25.0% |
| ! | TATGTTGTTATGATTCTACA+CGG | + | chr4.1:18705125-18705144 | MS.gene36456:CDS | 25.0% |
| ! | TGCTTTCATTAACAAGAAAA+AGG | + | chr4.1:18706135-18706154 | MS.gene36456:intron | 25.0% |
| !! | CATACAATACTACGATTTTT+AGG | - | chr4.1:18707162-18707181 | None:intergenic | 25.0% |
| !! | TGGACTATTGTTATGTTTTA+GGG | - | chr4.1:18705608-18705627 | None:intergenic | 25.0% |
| !!! | AAAAATTTTTTTAGTGGTCG+GGG | - | chr4.1:18706909-18706928 | None:intergenic | 25.0% |
| !!! | AACTTGGATTTTTTTGTTTC+AGG | + | chr4.1:18705653-18705672 | MS.gene36456:intron | 25.0% |
| !!! | AGTGCAACTTATTTTTGAAA+CGG | + | chr4.1:18707091-18707110 | MS.gene36456:intron | 25.0% |
| !!! | ATGATATTGATTTTCCAAGA+GGG | + | chr4.1:18704642-18704661 | MS.gene36456:CDS | 25.0% |
| !!! | ATGGACTATTGTTATGTTTT+AGG | - | chr4.1:18705609-18705628 | None:intergenic | 25.0% |
| !!! | TATGATATTGATTTTCCAAG+AGG | + | chr4.1:18704641-18704660 | MS.gene36456:CDS | 25.0% |
| !!! | TATTGTTTGACTTTGTTGTT+AGG | + | chr4.1:18707376-18707395 | MS.gene36456:intron | 25.0% |
| !!! | TATTTTAAAATCAAGGACAC+CGG | + | chr4.1:18705461-18705480 | MS.gene36456:intron | 25.0% |
| AAGAAGACATTCTTCATATC+AGG | - | chr4.1:18707288-18707307 | None:intergenic | 30.0% | |
| AAGTGGAATAAAGACAAGAT+TGG | + | chr4.1:18706616-18706635 | MS.gene36456:intron | 30.0% | |
| AAGTTCGTTTCAAATGTTTG+AGG | - | chr4.1:18707067-18707086 | None:intergenic | 30.0% | |
| AATGAGGCAAACTATATTGT+AGG | + | chr4.1:18706298-18706317 | MS.gene36456:CDS | 30.0% | |
| AGTGGAATAAAGACAAGATT+GGG | + | chr4.1:18706617-18706636 | MS.gene36456:intron | 30.0% | |
| ATAAGCACATTAATGACTGT+TGG | - | chr4.1:18705519-18705538 | None:intergenic | 30.0% | |
| ATATGATTGATCGATCAAAG+TGG | + | chr4.1:18706599-18706618 | MS.gene36456:intron | 30.0% | |
| ATTCATTTACCTTGCAATCA+TGG | - | chr4.1:18705315-18705334 | None:intergenic | 30.0% | |
| ATTGTGAAATAACATTCTCC+TGG | - | chr4.1:18704859-18704878 | None:intergenic | 30.0% | |
| ATTTAGTCACAAATGTGTCT+CGG | - | chr4.1:18706065-18706084 | None:intergenic | 30.0% | |
| CATCTACCGTAACATTATAA+AGG | - | chr4.1:18705063-18705082 | None:intergenic | 30.0% | |
| GAATATGGACAAACCAAATA+TGG | + | chr4.1:18707002-18707021 | MS.gene36456:intron | 30.0% | |
| GACAAATCATATGTGAATGA+CGG | + | chr4.1:18705399-18705418 | MS.gene36456:intron | 30.0% | |
| GCAATACTTCTACTATTGTT+TGG | + | chr4.1:18704509-18704528 | MS.gene36456:CDS | 30.0% | |
| GTATAGCTGCTTAATGTAAA+AGG | + | chr4.1:18706769-18706788 | MS.gene36456:intron | 30.0% | |
| GTGTGACCTTTATAATGTTA+CGG | + | chr4.1:18705054-18705073 | MS.gene36456:CDS | 30.0% | |
| TAAATTGAGAGTCTCTCTTA+AGG | - | chr4.1:18705978-18705997 | None:intergenic | 30.0% | |
| TAACTGTGTATCTTAAGTAG+AGG | - | chr4.1:18705189-18705208 | None:intergenic | 30.0% | |
| TCACTCTTTAGTGTATCATA+TGG | + | chr4.1:18706723-18706742 | MS.gene36456:intron | 30.0% | |
| TGTTACACATCACAAGTTAT+AGG | + | chr4.1:18706975-18706994 | MS.gene36456:intron | 30.0% | |
| TGTTCTTCTATACCAAGTTA+TGG | + | chr4.1:18706256-18706275 | MS.gene36456:CDS | 30.0% | |
| ! | CATGTGATAGTTTTCAATTG+AGG | + | chr4.1:18706104-18706123 | MS.gene36456:intron | 30.0% |
| ! | TAAATTGAAGGAAGGTTTTG+AGG | + | chr4.1:18705150-18705169 | MS.gene36456:CDS | 30.0% |
| ! | TATATGTGGATCATGTTTTC+AGG | + | chr4.1:18706219-18706238 | MS.gene36456:intron | 30.0% |
| ! | TGATTGGGATGATTTTATAG+TGG | + | chr4.1:18705216-18705235 | MS.gene36456:CDS | 30.0% |
| ! | TGTTTATTGATAACTGATCC+AGG | - | chr4.1:18704617-18704636 | None:intergenic | 30.0% |
| !! | AAATTGAAGGAAGGTTTTGA+GGG | + | chr4.1:18705151-18705170 | MS.gene36456:CDS | 30.0% |
| !! | AGCTTGTTTTCTGATATATG+TGG | + | chr4.1:18706205-18706224 | MS.gene36456:intron | 30.0% |
| !! | ATTTGGTTTGTCCATATTCA+CGG | - | chr4.1:18707001-18707020 | None:intergenic | 30.0% |
| !!! | AAAATTTTTTTAGTGGTCGG+GGG | - | chr4.1:18706908-18706927 | None:intergenic | 30.0% |
| !!! | ATTTTAAAATCAAGGACACC+GGG | + | chr4.1:18705462-18705481 | MS.gene36456:intron | 30.0% |
| !!! | GTGCAACTTATTTTTGAAAC+GGG | + | chr4.1:18707092-18707111 | MS.gene36456:intron | 30.0% |
| !!! | TACCCGTTCTTCTTTTTTTA+TGG | + | chr4.1:18706486-18706505 | MS.gene36456:intron | 30.0% |
| AATGTTACGGTAGATGAACA+TGG | + | chr4.1:18705067-18705086 | MS.gene36456:CDS | 35.0% | |
| ACAAACCATAAGGAGGAAAA+TGG | + | chr4.1:18705702-18705721 | MS.gene36456:CDS | 35.0% | |
| ACAAGTCTTCCATTTCAAAC+TGG | + | chr4.1:18705744-18705763 | MS.gene36456:CDS | 35.0% | |
| ACAATAGTCCATTACTTTGC+CGG | + | chr4.1:18705617-18705636 | MS.gene36456:intron | 35.0% | |
| ACAGACTTTGCATGCATAAT+TGG | + | chr4.1:18707133-18707152 | MS.gene36456:intron | 35.0% | |
| ACATATCCACCAGTTTGAAA+TGG | - | chr4.1:18705756-18705775 | None:intergenic | 35.0% | |
| ATCAAGATCAAACAGTGTCT+TGG | - | chr4.1:18705496-18705515 | None:intergenic | 35.0% | |
| ATGAAACCTATCTCCATCAT+TGG | + | chr4.1:18704729-18704748 | MS.gene36456:CDS | 35.0% | |
| ATGAACATGGAAGGTCTATT+AGG | + | chr4.1:18705080-18705099 | MS.gene36456:CDS | 35.0% | |
| ATTTCACAATACTTTGGCCT+TGG | + | chr4.1:18704869-18704888 | MS.gene36456:CDS | 35.0% | |
| CATGTATAGCACTAACACTT+AGG | + | chr4.1:18706001-18706020 | MS.gene36456:intron | 35.0% | |
| GAATTGGATCAACTCTATAC+GGG | + | chr4.1:18705808-18705827 | MS.gene36456:CDS | 35.0% | |
| GGAATTGGATCAACTCTATA+CGG | + | chr4.1:18705807-18705826 | MS.gene36456:CDS | 35.0% | |
| GGTTCTGTCAAGATAATTGA+TGG | + | chr4.1:18706346-18706365 | MS.gene36456:CDS | 35.0% | |
| TAAACTAGGCTATTCTGTCA+CGG | - | chr4.1:18707327-18707346 | None:intergenic | 35.0% | |
| TAAGGAGCAGAGAATCATTA+TGG | - | chr4.1:18705960-18705979 | None:intergenic | 35.0% | |
| TCAATTATCTTGACAGAACC+TGG | - | chr4.1:18706346-18706365 | None:intergenic | 35.0% | |
| TCATTTCCAGTTCCATAACT+TGG | - | chr4.1:18706271-18706290 | None:intergenic | 35.0% | |
| TCTATACCAAGTTATGGAAC+TGG | + | chr4.1:18706262-18706281 | MS.gene36456:CDS | 35.0% | |
| TTACCTATCTCTATACCGAA+AGG | - | chr4.1:18704932-18704951 | None:intergenic | 35.0% | |
| TTCTACACGGTGTAAATTGA+AGG | + | chr4.1:18705138-18705157 | MS.gene36456:CDS | 35.0% | |
| ! | AATGATGGAGATAGGTTTCA+TGG | - | chr4.1:18704730-18704749 | None:intergenic | 35.0% |
| ! | AATGGGACTTTTCTACCTAT+TGG | + | chr4.1:18706423-18706442 | MS.gene36456:intron | 35.0% |
| !! | ACACAGTTAAATGGGTTGAT+TGG | + | chr4.1:18705200-18705219 | MS.gene36456:CDS | 35.0% |
| !! | CACAGTTAAATGGGTTGATT+GGG | + | chr4.1:18705201-18705220 | MS.gene36456:CDS | 35.0% |
| !! | GATTAGATGTCACTTTCTAG+TGG | + | chr4.1:18705894-18705913 | MS.gene36456:intron | 35.0% |
| !! | TAGAATGTCTGAAGTGTTGT+TGG | - | chr4.1:18706468-18706487 | None:intergenic | 35.0% |
| !! | TGACTTTGTTGTTAGGAGTT+GGG | + | chr4.1:18707383-18707402 | MS.gene36456:intron | 35.0% |
| !! | TTGACTTTGTTGTTAGGAGT+TGG | + | chr4.1:18707382-18707401 | MS.gene36456:intron | 35.0% |
| !!! | ACTTATTTTTGAAACGGGTG+TGG | + | chr4.1:18707097-18707116 | MS.gene36456:intron | 35.0% |
| AAACTAGGCTATTCTGTCAC+GGG | - | chr4.1:18707326-18707345 | None:intergenic | 40.0% | |
| AATCCTGAAGAGATTCCAGA+AGG | + | chr4.1:18704950-18704969 | MS.gene36456:CDS | 40.0% | |
| ACACGGTGTAAATTGAAGGA+AGG | + | chr4.1:18705142-18705161 | MS.gene36456:CDS | 40.0% | |
| ACTCTGATCATGTTCTTGTG+AGG | + | chr4.1:18704819-18704838 | MS.gene36456:CDS | 40.0% | |
| AGAAGGGTTTGAGGACAAAT+GGG | + | chr4.1:18704967-18704986 | MS.gene36456:CDS | 40.0% | |
| AGGTCCAAGTTCAAACTTAG+GGG | - | chr4.1:18704597-18704616 | None:intergenic | 40.0% | |
| AGTCTTCCATTTCAAACTGG+TGG | + | chr4.1:18705747-18705766 | MS.gene36456:CDS | 40.0% | |
| ATCCTGAAGAGATTCCAGAA+GGG | + | chr4.1:18704951-18704970 | MS.gene36456:CDS | 40.0% | |
| ATCTCTATACCGAAAGGATC+CGG | - | chr4.1:18704926-18704945 | None:intergenic | 40.0% | |
| ATCTTGACAGAACCTGGTTT+AGG | - | chr4.1:18706340-18706359 | None:intergenic | 40.0% | |
| ATCTTGCAGCACAAACCATA+AGG | + | chr4.1:18705692-18705711 | MS.gene36456:CDS | 40.0% | |
| ATGGTTGTGTTCATGTGAAG+AGG | + | chr4.1:18705721-18705740 | MS.gene36456:CDS | 40.0% | |
| ATGTTCATGCCATCGATACA+CGG | + | chr4.1:18704996-18705015 | MS.gene36456:CDS | 40.0% | |
| CAAGTTATAGGCCGTGAATA+TGG | + | chr4.1:18706987-18707006 | MS.gene36456:intron | 40.0% | |
| CAATAGTCCATTACTTTGCC+GGG | + | chr4.1:18705618-18705637 | MS.gene36456:intron | 40.0% | |
| CAGGTCCAAGTTCAAACTTA+GGG | - | chr4.1:18704598-18704617 | None:intergenic | 40.0% | |
| CATCAACATTCAGGTGGAAT+TGG | + | chr4.1:18705792-18705811 | MS.gene36456:CDS | 40.0% | |
| CTTAAGTAGAGGCTTCTCTT+TGG | - | chr4.1:18705178-18705197 | None:intergenic | 40.0% | |
| GATCCTTTCGGTATAGAGAT+AGG | + | chr4.1:18704926-18704945 | MS.gene36456:CDS | 40.0% | |
| GATTTGTCTGCGTGAATCTA+GGG | - | chr4.1:18705387-18705406 | None:intergenic | 40.0% | |
| GGCTGACAATGCATTAAACT+AGG | - | chr4.1:18707341-18707360 | None:intergenic | 40.0% | |
| GTAGTTAACATCTGTGTGTG+TGG | - | chr4.1:18704786-18704805 | None:intergenic | 40.0% | |
| GTCTTTCAACAAGCCAATGA+TGG | - | chr4.1:18704745-18704764 | None:intergenic | 40.0% | |
| TATGGAACTGGAAATGAAGC+AGG | + | chr4.1:18706274-18706293 | MS.gene36456:CDS | 40.0% | |
| TCCACATGTTATCCTAAACC+AGG | + | chr4.1:18706325-18706344 | MS.gene36456:CDS | 40.0% | |
| TCTAACTACAACAGCAGCAA+GGG | + | chr4.1:18706388-18706407 | MS.gene36456:CDS | 40.0% | |
| TGGAAATGAAGCAGGAAATG+AGG | + | chr4.1:18706282-18706301 | MS.gene36456:CDS | 40.0% | |
| TTAAGTGCTATATGCCCTCT+TGG | - | chr4.1:18704659-18704678 | None:intergenic | 40.0% | |
| TTACGGTAGATGAACATGGA+AGG | + | chr4.1:18705071-18705090 | MS.gene36456:CDS | 40.0% | |
| ! | AACAAGCCAATGATGGAGAT+AGG | - | chr4.1:18704738-18704757 | None:intergenic | 40.0% |
| ! | ACCTGGTTTAGGATAACATG+TGG | - | chr4.1:18706329-18706348 | None:intergenic | 40.0% |
| ! | ACTGGTGGATATGTGATCTA+TGG | + | chr4.1:18705762-18705781 | MS.gene36456:CDS | 40.0% |
| ! | CACAACCATTTTCCTCCTTA+TGG | - | chr4.1:18705710-18705729 | None:intergenic | 40.0% |
| ! | TAGGTTTCATGGAGAGGTAT+AGG | - | chr4.1:18704719-18704738 | None:intergenic | 40.0% |
| ! | TGATTTGTCTGCGTGAATCT+AGG | - | chr4.1:18705388-18705407 | None:intergenic | 40.0% |
| !! | GTCTGAAGTGTTGTTGGTAT+GGG | - | chr4.1:18706462-18706481 | None:intergenic | 40.0% |
| !! | TGTCTGAAGTGTTGTTGGTA+TGG | - | chr4.1:18706463-18706482 | None:intergenic | 40.0% |
| !! | TGTGGATCATGTTTTCAGGA+TGG | + | chr4.1:18706223-18706242 | MS.gene36456:intron | 40.0% |
| AAAATCAAGGACACCGGGTT+TGG | + | chr4.1:18705467-18705486 | MS.gene36456:intron | 45.0% | |
| ACCGAAAGGATCCGGAATAT+CGG | - | chr4.1:18704918-18704937 | None:intergenic | 45.0% | |
| ACCGATATTCCGGATCCTTT+CGG | + | chr4.1:18704914-18704933 | MS.gene36456:CDS | 45.0% | |
| AGAGATTCCAGAAGGGTTTG+AGG | + | chr4.1:18704958-18704977 | MS.gene36456:CDS | 45.0% | |
| AGTGTCTTGGATTCCAAACC+CGG | - | chr4.1:18705483-18705502 | None:intergenic | 45.0% | |
| CAAGTTGCTCACCATATACC+CGG | - | chr4.1:18705639-18705658 | None:intergenic | 45.0% | |
| CAGAAGGGTTTGAGGACAAA+TGG | + | chr4.1:18704966-18704985 | MS.gene36456:CDS | 45.0% | |
| CATGTTCTTGTGAGGAACAG+TGG | + | chr4.1:18704827-18704846 | MS.gene36456:CDS | 45.0% | |
| CATTTGTCCTCAAACCCTTC+TGG | - | chr4.1:18704968-18704987 | None:intergenic | 45.0% | |
| CCAGGTCCAAGTTCAAACTT+AGG | - | chr4.1:18704599-18704618 | None:intergenic | 45.0% | |
| CCATATACCCGGCAAAGTAA+TGG | - | chr4.1:18705628-18705647 | None:intergenic | 45.0% | |
| CCATTACTTTGCCGGGTATA+TGG | + | chr4.1:18705625-18705644 | MS.gene36456:intron | 45.0% | |
| CCTAAGTTTGAACTTGGACC+TGG | + | chr4.1:18704596-18704615 | MS.gene36456:CDS | 45.0% | |
| CTAACTACAACAGCAGCAAG+GGG | + | chr4.1:18706389-18706408 | MS.gene36456:CDS | 45.0% | |
| CTGTCCCCTAAGTTTGAACT+TGG | + | chr4.1:18704590-18704609 | MS.gene36456:CDS | 45.0% | |
| GAACTCAGACCATGATTGCA+AGG | + | chr4.1:18705303-18705322 | MS.gene36456:CDS | 45.0% | |
| GTCTAACTACAACAGCAGCA+AGG | + | chr4.1:18706387-18706406 | MS.gene36456:CDS | 45.0% | |
| GTTGCTCATCAACATTCAGG+TGG | + | chr4.1:18705786-18705805 | MS.gene36456:CDS | 45.0% | |
| TGGAGATAGGTTTCATGGAG+AGG | - | chr4.1:18704725-18704744 | None:intergenic | 45.0% | |
| TGTTCATGCCATCGATACAC+GGG | + | chr4.1:18704997-18705016 | MS.gene36456:CDS | 45.0% | |
| TTCGAGTGTCTGACACATGT+TGG | + | chr4.1:18706036-18706055 | MS.gene36456:intron | 45.0% | |
| TTGCAGCACAAACCATAAGG+AGG | + | chr4.1:18705695-18705714 | MS.gene36456:CDS | 45.0% | |
| ! | AAGTGGAGTGTCATGGAACA+TGG | + | chr4.1:18706560-18706579 | MS.gene36456:intron | 45.0% |
| ! | GGAACATAAGTGGAGTGTCA+TGG | + | chr4.1:18706553-18706572 | MS.gene36456:intron | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | + | chr4.1:18706426-18706445 | MS.gene36456:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | + | chr4.1:18706848-18706867 | MS.gene36456:intron | 45.0% |
| !! | AACCCTTCTGGAATCTCTTC+AGG | - | chr4.1:18704956-18704975 | None:intergenic | 45.0% |
| !! | GCTGAAGTAGTTGATGATGC+TGG | + | chr4.1:18704689-18704708 | MS.gene36456:CDS | 45.0% |
| !! | GGTGTTGCTCATCAACATTC+AGG | + | chr4.1:18705783-18705802 | MS.gene36456:CDS | 45.0% |
| !!! | AAAAAAAAAAATTTTTTTAG+TGG | - | chr4.1:18706915-18706934 | None:intergenic | 5.0% |
| CGGGTATATGGTGAGCAACT+TGG | + | chr4.1:18705637-18705656 | MS.gene36456:intron | 50.0% | |
| GGAGTTGTTCTGCCACCAAT+AGG | - | chr4.1:18706441-18706460 | None:intergenic | 50.0% | |
| GGGGGGCAGAGGATAAATTA+GGG | + | chr4.1:18705017-18705036 | MS.gene36456:CDS | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | + | chr4.1:18706847-18706866 | MS.gene36456:intron | 50.0% | |
| GTTCATGCCATCGATACACG+GGG | + | chr4.1:18704998-18705017 | MS.gene36456:CDS | 50.0% | |
| TAGGCTATTCTGTCACGGGA+CGG | - | chr4.1:18707322-18707341 | None:intergenic | 50.0% | |
| TGGAACAGCGACCGATATTC+CGG | + | chr4.1:18704904-18704923 | MS.gene36456:CDS | 50.0% | |
| TGGATCAACTCTATACGGGC+AGG | + | chr4.1:18705812-18705831 | MS.gene36456:CDS | 50.0% | |
| TTCATGCCATCGATACACGG+GGG | + | chr4.1:18704999-18705018 | MS.gene36456:CDS | 50.0% | |
| TTCCACGTGTTTCGGATCCA+AGG | - | chr4.1:18704889-18704908 | None:intergenic | 50.0% | |
| ! | AAGGGGCACACTGGAGTAAT+GGG | + | chr4.1:18706406-18706425 | MS.gene36456:intron | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr4.1:18706846-18706865 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr4.1:18706843-18706862 | MS.gene36456:intron | 55.0% | |
| CGGGGGGCAGAGGATAAATT+AGG | + | chr4.1:18705016-18705035 | MS.gene36456:CDS | 55.0% | |
| CTGAGCTAAGCTCACGAGGA+CGG | - | chr4.1:18706842-18706861 | None:intergenic | 55.0% | |
| GAGGAACAGTGGCATATGCC+AGG | + | chr4.1:18704838-18704857 | MS.gene36456:CDS | 55.0% | |
| GGTCGCTGTTCCACGTGTTT+CGG | - | chr4.1:18704897-18704916 | None:intergenic | 55.0% | |
| TCATGCCATCGATACACGGG+GGG | + | chr4.1:18705000-18705019 | MS.gene36456:CDS | 55.0% | |
| TGAGCTAAGCTCACGAGGAC+GGG | - | chr4.1:18706841-18706860 | None:intergenic | 55.0% | |
| ! | CAAGGGGCACACTGGAGTAA+TGG | + | chr4.1:18706405-18706424 | MS.gene36456:intron | 55.0% |
| GGCCTTGGATCCGAAACACG+TGG | + | chr4.1:18704884-18704903 | MS.gene36456:CDS | 60.0% | |
| TCTGTCACGGGACGGCTATC+TGG | - | chr4.1:18707314-18707333 | None:intergenic | 60.0% | |
| ! | AACAGCAGCAAGGGGCACAC+TGG | + | chr4.1:18706397-18706416 | MS.gene36456:CDS | 60.0% |
| !! | AAGCTCACGAGGACGGGTTG+TGG | - | chr4.1:18706835-18706854 | None:intergenic | 60.0% |
| CATCGATACACGGGGGGCAG+AGG | + | chr4.1:18705006-18705025 | MS.gene36456:CDS | 65.0% | |
| CTCTGCCCCCCGTGTATCGA+TGG | - | chr4.1:18705008-18705027 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18704473 | 18707418 | 18704473 | ID=MS.gene36456 |
| chr4.1 | mRNA | 18704473 | 18707418 | 18704473 | ID=MS.gene36456.t1;Parent=MS.gene36456 |
| chr4.1 | exon | 18704473 | 18705324 | 18704473 | ID=MS.gene36456.t1.exon1;Parent=MS.gene36456.t1 |
| chr4.1 | CDS | 18704473 | 18705324 | 18704473 | ID=cds.MS.gene36456.t1;Parent=MS.gene36456.t1 |
| chr4.1 | exon | 18705675 | 18705833 | 18705675 | ID=MS.gene36456.t1.exon2;Parent=MS.gene36456.t1 |
| chr4.1 | CDS | 18705675 | 18705833 | 18705675 | ID=cds.MS.gene36456.t1;Parent=MS.gene36456.t1 |
| chr4.1 | exon | 18706241 | 18706420 | 18706241 | ID=MS.gene36456.t1.exon3;Parent=MS.gene36456.t1 |
| chr4.1 | CDS | 18706241 | 18706420 | 18706241 | ID=cds.MS.gene36456.t1;Parent=MS.gene36456.t1 |
| chr4.1 | exon | 18707398 | 18707418 | 18707398 | ID=MS.gene36456.t1.exon4;Parent=MS.gene36456.t1 |
| chr4.1 | CDS | 18707398 | 18707418 | 18707398 | ID=cds.MS.gene36456.t1;Parent=MS.gene36456.t1 |
| Gene Sequence |
| Protein sequence |