Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36458.t1 | RHN62838.1 | 91.3 | 427 | 28 | 2 | 1 | 426 | 23 | 441 | 2.40E-233 | 817.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36458.t1 | A0A072UPU9 | 91.3 | 427 | 28 | 2 | 1 | 426 | 1 | 419 | 1.8e-233 | 817.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049603 | MS.gene36458 | 0.816266 | 6.04E-52 | -1.69E-46 |
| MS.gene050173 | MS.gene36458 | 0.803524 | 3.35E-49 | -1.69E-46 |
| MS.gene053561 | MS.gene36458 | 0.80122 | 9.98E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36458.t1 | MTR_4g094562 | 91.335 | 427 | 28 | 2 | 1 | 426 | 1 | 419 | 0.0 | 808 |
| MS.gene36458.t1 | MTR_4g094555 | 83.908 | 435 | 69 | 1 | 1 | 434 | 1 | 435 | 0.0 | 756 |
| MS.gene36458.t1 | MTR_4g094550 | 84.848 | 429 | 63 | 2 | 1 | 427 | 1 | 429 | 0.0 | 755 |
| MS.gene36458.t1 | MTR_4g094548 | 83.488 | 430 | 69 | 2 | 7 | 434 | 8 | 437 | 0.0 | 747 |
| MS.gene36458.t1 | MTR_4g094570 | 81.991 | 422 | 76 | 0 | 7 | 428 | 8 | 429 | 0.0 | 732 |
| MS.gene36458.t1 | MTR_4g094560 | 81.379 | 435 | 70 | 2 | 1 | 434 | 1 | 425 | 0.0 | 720 |
| MS.gene36458.t1 | MTR_6g048350 | 78.422 | 431 | 92 | 1 | 1 | 430 | 1 | 431 | 0.0 | 714 |
| MS.gene36458.t1 | MTR_6g048310 | 78.118 | 425 | 87 | 3 | 3 | 426 | 2 | 421 | 0.0 | 676 |
| MS.gene36458.t1 | MTR_4g094562 | 90.878 | 296 | 26 | 1 | 1 | 295 | 1 | 296 | 0.0 | 568 |
| MS.gene36458.t1 | MTR_2g030460 | 60.636 | 409 | 151 | 4 | 9 | 415 | 12 | 412 | 0.0 | 540 |
| MS.gene36458.t1 | MTR_4g094565 | 65.268 | 429 | 67 | 3 | 1 | 428 | 1 | 348 | 0.0 | 535 |
| MS.gene36458.t1 | MTR_2g030470 | 58.469 | 431 | 166 | 3 | 9 | 434 | 15 | 437 | 0.0 | 534 |
| MS.gene36458.t1 | MTR_2g030470 | 58.711 | 419 | 161 | 3 | 1 | 415 | 416 | 826 | 1.76e-180 | 525 |
| MS.gene36458.t1 | MTR_1g052640 | 59.762 | 420 | 156 | 4 | 1 | 415 | 1 | 412 | 0.0 | 533 |
| MS.gene36458.t1 | MTR_0083s0100 | 62.629 | 388 | 136 | 2 | 29 | 415 | 33 | 412 | 0.0 | 531 |
| MS.gene36458.t1 | MTR_2g030480 | 58.272 | 405 | 141 | 2 | 11 | 415 | 15 | 391 | 2.35e-176 | 498 |
| MS.gene36458.t1 | MTR_2g030460 | 58.912 | 331 | 126 | 4 | 9 | 337 | 12 | 334 | 2.50e-148 | 425 |
| MS.gene36458.t1 | MTR_1g052640 | 58.187 | 342 | 130 | 4 | 1 | 337 | 1 | 334 | 1.33e-145 | 418 |
| MS.gene36458.t1 | MTR_4g094565 | 72.378 | 286 | 50 | 2 | 1 | 285 | 1 | 258 | 1.08e-142 | 410 |
| MS.gene36458.t1 | MTR_8g039300 | 44.286 | 420 | 211 | 8 | 1 | 411 | 1 | 406 | 5.97e-130 | 381 |
| MS.gene36458.t1 | MTR_6g089930 | 41.727 | 417 | 222 | 7 | 1 | 409 | 1 | 404 | 7.03e-125 | 368 |
| MS.gene36458.t1 | MTR_6g090090 | 43.165 | 417 | 206 | 8 | 1 | 409 | 27 | 420 | 2.74e-124 | 367 |
| MS.gene36458.t1 | MTR_3g035040 | 42.995 | 414 | 214 | 8 | 7 | 412 | 8 | 407 | 1.29e-121 | 360 |
| MS.gene36458.t1 | MTR_1g052640 | 57.241 | 290 | 111 | 4 | 1 | 285 | 1 | 282 | 2.64e-119 | 350 |
| MS.gene36458.t1 | MTR_1g035220 | 40.561 | 392 | 190 | 8 | 1 | 383 | 1 | 358 | 4.99e-104 | 313 |
| MS.gene36458.t1 | MTR_1g062750 | 41.004 | 239 | 126 | 5 | 57 | 286 | 2 | 234 | 5.27e-66 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36458.t1 | AT5G61820 | 56.867 | 415 | 158 | 7 | 11 | 411 | 12 | 419 | 5.92e-165 | 473 |
| MS.gene36458.t1 | AT5G61820 | 56.867 | 415 | 158 | 7 | 11 | 411 | 12 | 419 | 5.92e-165 | 473 |
Find 109 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTACTCCAGTGTGTTCT+TGG | 0.254712 | 4.1:-18671092 | None:intergenic |
| CAGAAGGGTCCGAGGATAAA+TGG | 0.264972 | 4.1:+18669795 | MS.gene36458:CDS |
| ATCTAAGATACACAGTAAAA+TGG | 0.267275 | 4.1:+18670020 | MS.gene36458:CDS |
| CAGGTCCTAACTCGAATTTC+GGG | 0.281315 | 4.1:-18669421 | None:intergenic |
| CCAGGTCCTAACTCGAATTT+CGG | 0.291077 | 4.1:-18669422 | None:intergenic |
| TGTTGCCGTTCCTCGTGTTT+CGG | 0.318017 | 4.1:-18669723 | None:intergenic |
| GGAATTGGATCCACCCTATA+TGG | 0.332124 | 4.1:+18670586 | MS.gene36458:CDS |
| TGGAAATTACCTGTCCATAT+AGG | 0.336191 | 4.1:-18670600 | None:intergenic |
| CAAGAACACACTGGAGTAAT+GGG | 0.339184 | 4.1:+18671093 | MS.gene36458:CDS |
| CATCAGCATTCAGGTGGAAT+TGG | 0.345957 | 4.1:+18670571 | MS.gene36458:CDS |
| GGAAATTACCTGTCCATATA+GGG | 0.348859 | 4.1:-18670599 | None:intergenic |
| TAAGTTTCATGGAGAGGTAT+AGG | 0.349623 | 4.1:-18669542 | None:intergenic |
| TCCATACCACGTTATGGAAA+TGG | 0.368210 | 4.1:+18670949 | MS.gene36458:CDS |
| GGTGTTGCACATCAGCATTC+AGG | 0.372185 | 4.1:+18670562 | MS.gene36458:CDS |
| ACACAGTAAAATGGGTTGAT+TGG | 0.378269 | 4.1:+18670029 | MS.gene36458:CDS |
| GCAATACTTCTGCTATTGTT+TGG | 0.383102 | 4.1:+18669335 | MS.gene36458:CDS |
| GAGTAGAATGTCTGAGTTGA+TGG | 0.383708 | 4.1:-18671152 | None:intergenic |
| TGAAACTTATCTCCATCATT+GGG | 0.386239 | 4.1:+18669556 | MS.gene36458:CDS |
| ATGAAACTTATCTCCATCAT+TGG | 0.388395 | 4.1:+18669555 | MS.gene36458:CDS |
| ATCTCTATACCGAAAGGTTC+CGG | 0.388605 | 4.1:-18669752 | None:intergenic |
| TTGTCCCCGAAATTCGAGTT+AGG | 0.393897 | 4.1:+18669416 | MS.gene36458:CDS |
| CGTGGCGTGGAGGATAAGTT+AGG | 0.394688 | 4.1:+18669845 | MS.gene36458:CDS |
| AATGTTACGGTGGATGAATA+TGG | 0.394757 | 4.1:+18669896 | MS.gene36458:CDS |
| TGTTCTTCCATACCACGTTA+TGG | 0.396127 | 4.1:+18670943 | MS.gene36458:CDS |
| GAGGAACAGTGGCATATGTC+AGG | 0.396372 | 4.1:+18669667 | MS.gene36458:CDS |
| AATGATGGAGATAAGTTTCA+TGG | 0.396431 | 4.1:-18669553 | None:intergenic |
| CTTAGATAGAGGCTTCTCTT+TGG | 0.397938 | 4.1:-18670004 | None:intergenic |
| CACAGTAAAATGGGTTGATT+GGG | 0.401945 | 4.1:+18670030 | MS.gene36458:CDS |
| TCAATTATATATATCTTAAC+AGG | 0.405782 | 4.1:-18670067 | None:intergenic |
| ACTGGTGGCTATGTGATCTA+TGG | 0.406576 | 4.1:+18670541 | MS.gene36458:CDS |
| ACAGATATTCCGGAACCTTT+CGG | 0.407359 | 4.1:+18669743 | MS.gene36458:CDS |
| ATGAATATGGAAGGTCTATA+AGG | 0.411102 | 4.1:+18669909 | MS.gene36458:CDS |
| CAGAACTTTGAAGCATCCTT+TGG | 0.412728 | 4.1:-18669631 | None:intergenic |
| TTACTGTGTATCTTAGATAG+AGG | 0.415894 | 4.1:-18670015 | None:intergenic |
| ACATAGCCACCAGTTTGAAA+TGG | 0.422102 | 4.1:-18670532 | None:intergenic |
| AATACTCTTGGACAATACTT+TGG | 0.427743 | 4.1:+18669692 | MS.gene36458:CDS |
| TCTATAAGGCCAGATTATAA+AGG | 0.432793 | 4.1:+18669923 | MS.gene36458:CDS |
| AACCAACCTCCTTTATAATC+TGG | 0.436373 | 4.1:-18669932 | None:intergenic |
| AGGAACGGCAACAGATATTC+CGG | 0.440982 | 4.1:+18669733 | MS.gene36458:CDS |
| CTTGGACAATACTTTGGCAT+TGG | 0.442628 | 4.1:+18669698 | MS.gene36458:CDS |
| TCAATTATCGTGACGGAACC+TGG | 0.451783 | 4.1:-18671030 | None:intergenic |
| TTGAGTGCAATATGACCTCT+TGG | 0.455360 | 4.1:-18669482 | None:intergenic |
| CCAAGAACACACTGGAGTAA+TGG | 0.458171 | 4.1:+18671092 | MS.gene36458:CDS |
| ATCGTGACGGAACCTGGTTT+AGG | 0.460036 | 4.1:-18671024 | None:intergenic |
| TCCATTTCCATAACGTGGTA+TGG | 0.460705 | 4.1:-18670950 | None:intergenic |
| TCTAAGATACACAGTAAAAT+GGG | 0.465087 | 4.1:+18670021 | MS.gene36458:CDS |
| AATGAGACAGGCTACATTGT+AGG | 0.466676 | 4.1:+18670985 | MS.gene36458:CDS |
| GAACCTTTCGGTATAGAGAT+AGG | 0.466983 | 4.1:+18669755 | MS.gene36458:CDS |
| CTCCACGCCACGTGTATCAA+TGG | 0.468315 | 4.1:-18669834 | None:intergenic |
| CCGAAATTCGAGTTAGGACC+TGG | 0.469785 | 4.1:+18669422 | MS.gene36458:CDS |
| GTTGCTGTTCTGCAACCAAT+AGG | 0.474536 | 4.1:-18671125 | None:intergenic |
| CATAGCCACCAGTTTGAAAT+GGG | 0.475271 | 4.1:-18670531 | None:intergenic |
| ATCTGATAGTTTCAAAGTAT+CGG | 0.483069 | 4.1:-18670095 | None:intergenic |
| TCTTTATTGATAACTGATCC+AGG | 0.484752 | 4.1:-18669440 | None:intergenic |
| GTGCGAGCTTTATAATGTTA+CGG | 0.488201 | 4.1:+18669883 | MS.gene36458:CDS |
| AAACTATCAGATAACTCAAA+AGG | 0.488445 | 4.1:+18670106 | MS.gene36458:CDS |
| ACAAGTCTCCCATTTCAAAC+TGG | 0.501575 | 4.1:+18670523 | MS.gene36458:CDS |
| TTGTACACAGTGCAAGTTGA+AGG | 0.504293 | 4.1:+18669967 | MS.gene36458:CDS |
| AGAAGGGTCCGAGGATAAAT+GGG | 0.505079 | 4.1:+18669796 | MS.gene36458:CDS |
| ATCTTGCAACACCCCAATGA+TGG | 0.507927 | 4.1:-18669568 | None:intergenic |
| GCCACTGAAAATACAAACTT+AGG | 0.511667 | 4.1:-18669314 | None:intergenic |
| GGTTCCGTCACGATAATTGA+TGG | 0.511998 | 4.1:+18671033 | MS.gene36458:CDS |
| GACCCTTCTGAAACCTCTGC+AGG | 0.513932 | 4.1:-18669782 | None:intergenic |
| ACAAACCACAAGGAGCGAAA+TGG | 0.515563 | 4.1:+18670481 | MS.gene36458:CDS |
| ATATGTCAGGGAAATACTCT+TGG | 0.523938 | 4.1:+18669680 | MS.gene36458:CDS |
| TATGGAAATGGAAACGAAGC+AGG | 0.525207 | 4.1:+18670961 | MS.gene36458:CDS |
| TTTCATGATTTCAGGATGGG+AGG | 0.525371 | 4.1:+18670914 | MS.gene36458:intron |
| CACAGCCATTTCGCTCCTTG+TGG | 0.529057 | 4.1:-18670486 | None:intergenic |
| GTCACACACACAAGAAATGA+TGG | 0.529849 | 4.1:+18669608 | MS.gene36458:CDS |
| GGCCAGATTATAAAGGAGGT+TGG | 0.552111 | 4.1:+18669930 | MS.gene36458:CDS |
| TGGATCCACCCTATATGGAC+AGG | 0.552599 | 4.1:+18670591 | MS.gene36458:CDS |
| TTCATGATTTCAGGATGGGA+GGG | 0.555017 | 4.1:+18670915 | MS.gene36458:intron |
| AACGAAGCAGGAAATGAGAC+AGG | 0.557757 | 4.1:+18670973 | MS.gene36458:CDS |
| GTGGCGTGGAGGATAAGTTA+GGG | 0.565799 | 4.1:+18669846 | MS.gene36458:CDS |
| ATGGCTGTGTTAATGTAAAG+AGG | 0.565801 | 4.1:+18670500 | MS.gene36458:CDS |
| TGCCATTGATACACGTGGCG+TGG | 0.583642 | 4.1:+18669832 | MS.gene36458:CDS |
| TTCACCATCAATTATCGTGA+CGG | 0.588512 | 4.1:-18671037 | None:intergenic |
| ATTAAGCACCCATTTATCCT+CGG | 0.597914 | 4.1:-18669804 | None:intergenic |
| TCGTTTCCATTTCCATAACG+TGG | 0.598819 | 4.1:-18670955 | None:intergenic |
| ACACAGTGCAAGTTGAAGGA+AGG | 0.600179 | 4.1:+18669971 | MS.gene36458:CDS |
| GAACTCTGATCATGATTGCA+AGG | 0.603932 | 4.1:+18670132 | MS.gene36458:CDS |
| TGGATCCGAAACACGAGGAA+CGG | 0.604008 | 4.1:+18669718 | MS.gene36458:CDS |
| TCAACTTGTTATCCTAAACC+AGG | 0.605101 | 4.1:+18671012 | MS.gene36458:CDS |
| GTTCTGATATTGTGAAAGTG+AGG | 0.606469 | 4.1:+18669648 | MS.gene36458:CDS |
| AATCCTGCAGAGGTTTCAGA+AGG | 0.606888 | 4.1:+18669779 | MS.gene36458:CDS |
| AGGAACAGTGGCATATGTCA+GGG | 0.613732 | 4.1:+18669668 | MS.gene36458:CDS |
| GCTGAAGTAGTTGATGATGC+TGG | 0.614547 | 4.1:+18669515 | MS.gene36458:CDS |
| GAATGTCTGAGTTGATGGTA+TGG | 0.615297 | 4.1:-18671147 | None:intergenic |
| TGGAGATAAGTTTCATGGAG+AGG | 0.630553 | 4.1:-18669548 | None:intergenic |
| AGTCTCCCATTTCAAACTGG+TGG | 0.630697 | 4.1:+18670526 | MS.gene36458:CDS |
| AATTACCTGTCCATATAGGG+TGG | 0.632679 | 4.1:-18670596 | None:intergenic |
| CATTGATACACGTGGCGTGG+AGG | 0.634415 | 4.1:+18669835 | MS.gene36458:CDS |
| ATCTTGCAGCACAAACCACA+AGG | 0.636798 | 4.1:+18670471 | MS.gene36458:CDS |
| ATAAGGCCAGATTATAAAGG+AGG | 0.643505 | 4.1:+18669926 | MS.gene36458:CDS |
| TTACGGTGGATGAATATGGA+AGG | 0.644081 | 4.1:+18669900 | MS.gene36458:CDS |
| TTACCTATCTCTATACCGAA+AGG | 0.645143 | 4.1:-18669758 | None:intergenic |
| AACAATAGCCAAGAACACAC+TGG | 0.645606 | 4.1:+18671084 | MS.gene36458:CDS |
| ACACAAGAAATGATGGCCAA+AGG | 0.645745 | 4.1:+18669615 | MS.gene36458:CDS |
| GTTGCACATCAGCATTCAGG+TGG | 0.648323 | 4.1:+18670565 | MS.gene36458:CDS |
| GGCATTGGATCCGAAACACG+AGG | 0.662444 | 4.1:+18669713 | MS.gene36458:CDS |
| AGAGATAGGTAATCCTGCAG+AGG | 0.665825 | 4.1:+18669769 | MS.gene36458:CDS |
| AGAGGTTTCAGAAGGGTCCG+AGG | 0.677663 | 4.1:+18669787 | MS.gene36458:CDS |
| GAAACTTATCTCCATCATTG+GGG | 0.685791 | 4.1:+18669557 | MS.gene36458:CDS |
| AAGAACACACTGGAGTAATG+GGG | 0.686123 | 4.1:+18671094 | MS.gene36458:CDS |
| CGAGCTTTATAATGTTACGG+TGG | 0.698006 | 4.1:+18669886 | MS.gene36458:CDS |
| GTTCATGCCATTGATACACG+TGG | 0.703873 | 4.1:+18669827 | MS.gene36458:CDS |
| AGGTCCTAACTCGAATTTCG+GGG | 0.706831 | 4.1:-18669420 | None:intergenic |
| ATCCTGCAGAGGTTTCAGAA+GGG | 0.717685 | 4.1:+18669780 | MS.gene36458:CDS |
| ATTGTGAAAGTGAGGAACAG+TGG | 0.726055 | 4.1:+18669656 | MS.gene36458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTATATATATCTTAAC+AGG | - | chr4.1:18670070-18670089 | None:intergenic | 15.0% |
| !! | TATTACATGAACAAATAGAA+GGG | - | chr4.1:18670711-18670730 | None:intergenic | 20.0% |
| !!! | AAATTTTGTTTCATGATTTC+AGG | + | chr4.1:18670906-18670925 | MS.gene36458:intron | 20.0% |
| ! | AAACTATCAGATAACTCAAA+AGG | + | chr4.1:18670106-18670125 | MS.gene36458:CDS | 25.0% |
| ! | ATCTGATAGTTTCAAAGTAT+CGG | - | chr4.1:18670098-18670117 | None:intergenic | 25.0% |
| ! | CTATTACATGAACAAATAGA+AGG | - | chr4.1:18670712-18670731 | None:intergenic | 25.0% |
| ! | CTGTTTAATTAACAAGCAAA+TGG | + | chr4.1:18670752-18670771 | MS.gene36458:intron | 25.0% |
| ! | TTCAAAAAAGAACTTAAGCA+TGG | - | chr4.1:18669365-18669384 | None:intergenic | 25.0% |
| !! | ATCTAAGATACACAGTAAAA+TGG | + | chr4.1:18670020-18670039 | MS.gene36458:CDS | 25.0% |
| !! | CATGTAATAGTTTTCAATTG+AGG | + | chr4.1:18670722-18670741 | MS.gene36458:intron | 25.0% |
| !! | TCTAAGATACACAGTAAAAT+GGG | + | chr4.1:18670021-18670040 | MS.gene36458:CDS | 25.0% |
| !! | TTGCTTGTTAATTAAACAGT+TGG | - | chr4.1:18670751-18670770 | None:intergenic | 25.0% |
| !! | TTTATATTTTGTGAACTGAC+TGG | - | chr4.1:18670213-18670232 | None:intergenic | 25.0% |
| !!! | TACTCGTTCTTCATTTTTTA+TGG | + | chr4.1:18671170-18671189 | MS.gene36458:CDS | 25.0% |
| !!! | TATGATATTGATTTTCCAAG+AGG | + | chr4.1:18669467-18669486 | MS.gene36458:CDS | 25.0% |
| AATACTCTTGGACAATACTT+TGG | + | chr4.1:18669692-18669711 | MS.gene36458:CDS | 30.0% | |
| ATATAACACTAGTCCATTGT+TGG | + | chr4.1:18670395-18670414 | MS.gene36458:intron | 30.0% | |
| ATGAAACTTATCTCCATCAT+TGG | + | chr4.1:18669555-18669574 | MS.gene36458:CDS | 30.0% | |
| ATGAATATGGAAGGTCTATA+AGG | + | chr4.1:18669909-18669928 | MS.gene36458:CDS | 30.0% | |
| GATTAAAGACGTATATGAGT+CGG | + | chr4.1:18670647-18670666 | MS.gene36458:intron | 30.0% | |
| TATAACACTAGTCCATTGTT+GGG | + | chr4.1:18670396-18670415 | MS.gene36458:intron | 30.0% | |
| TCTATAAGGCCAGATTATAA+AGG | + | chr4.1:18669923-18669942 | MS.gene36458:CDS | 30.0% | |
| TGAAACTTATCTCCATCATT+GGG | + | chr4.1:18669556-18669575 | MS.gene36458:CDS | 30.0% | |
| TTACTGTGTATCTTAGATAG+AGG | - | chr4.1:18670018-18670037 | None:intergenic | 30.0% | |
| TTGTTTCATGATTTCAGGAT+GGG | + | chr4.1:18670911-18670930 | MS.gene36458:intron | 30.0% | |
| TTTGTTTCATGATTTCAGGA+TGG | + | chr4.1:18670910-18670929 | MS.gene36458:intron | 30.0% | |
| ! | AATGATGGAGATAAGTTTCA+TGG | - | chr4.1:18669556-18669575 | None:intergenic | 30.0% |
| ! | ACCTAAGTTTGTATTTTCAG+TGG | + | chr4.1:18669313-18669332 | MS.gene36458:CDS | 30.0% |
| ! | TCTTTATTGATAACTGATCC+AGG | - | chr4.1:18669443-18669462 | None:intergenic | 30.0% |
| !! | TGCTTGTTTTCATTGTATAC+TGG | + | chr4.1:18670832-18670851 | MS.gene36458:intron | 30.0% |
| AAATACCGAGCTTGAAATCT+AGG | + | chr4.1:18670259-18670278 | MS.gene36458:intron | 35.0% | |
| AACCAACCTCCTTTATAATC+TGG | - | chr4.1:18669935-18669954 | None:intergenic | 35.0% | |
| AATGTTACGGTGGATGAATA+TGG | + | chr4.1:18669896-18669915 | MS.gene36458:CDS | 35.0% | |
| AATTAGCAGTTGAGGACTAT+CGG | + | chr4.1:18670782-18670801 | MS.gene36458:intron | 35.0% | |
| ATAAGGCCAGATTATAAAGG+AGG | + | chr4.1:18669926-18669945 | MS.gene36458:CDS | 35.0% | |
| ATATGTCAGGGAAATACTCT+TGG | + | chr4.1:18669680-18669699 | MS.gene36458:CDS | 35.0% | |
| ATGGCTGTGTTAATGTAAAG+AGG | + | chr4.1:18670500-18670519 | MS.gene36458:CDS | 35.0% | |
| ATTAAGCACCCATTTATCCT+CGG | - | chr4.1:18669807-18669826 | None:intergenic | 35.0% | |
| CTCATTATGATACCCAACAA+TGG | - | chr4.1:18670411-18670430 | None:intergenic | 35.0% | |
| GAAACTTATCTCCATCATTG+GGG | + | chr4.1:18669557-18669576 | MS.gene36458:CDS | 35.0% | |
| GACAGGTAATTTCCATTAGT+TGG | + | chr4.1:18670608-18670627 | MS.gene36458:intron | 35.0% | |
| GAGTGAATAATTAGCAGTTG+AGG | + | chr4.1:18670774-18670793 | MS.gene36458:intron | 35.0% | |
| GCAATACTTCTGCTATTGTT+TGG | + | chr4.1:18669335-18669354 | MS.gene36458:CDS | 35.0% | |
| GCCACTGAAAATACAAACTT+AGG | - | chr4.1:18669317-18669336 | None:intergenic | 35.0% | |
| GGAAATTACCTGTCCATATA+GGG | - | chr4.1:18670602-18670621 | None:intergenic | 35.0% | |
| GTCAATGCATCAATGAATGT+TGG | + | chr4.1:18670180-18670199 | MS.gene36458:intron | 35.0% | |
| GTTCTGATATTGTGAAAGTG+AGG | + | chr4.1:18669648-18669667 | MS.gene36458:CDS | 35.0% | |
| TGGAAATTACCTGTCCATAT+AGG | - | chr4.1:18670603-18670622 | None:intergenic | 35.0% | |
| TTACCTATCTCTATACCGAA+AGG | - | chr4.1:18669761-18669780 | None:intergenic | 35.0% | |
| TTCACCATCAATTATCGTGA+CGG | - | chr4.1:18671040-18671059 | None:intergenic | 35.0% | |
| ! | AGATTTCAAGCTCGGTATTT+TGG | - | chr4.1:18670259-18670278 | None:intergenic | 35.0% |
| ! | GTGCGAGCTTTATAATGTTA+CGG | + | chr4.1:18669883-18669902 | MS.gene36458:CDS | 35.0% |
| ! | TAAGTTTCATGGAGAGGTAT+AGG | - | chr4.1:18669545-18669564 | None:intergenic | 35.0% |
| !! | AAGTTGAAGGAAGGTTTTGA+GGG | + | chr4.1:18669980-18669999 | MS.gene36458:CDS | 35.0% |
| !! | ACACAGTAAAATGGGTTGAT+TGG | + | chr4.1:18670029-18670048 | MS.gene36458:CDS | 35.0% |
| !! | CACAGTAAAATGGGTTGATT+GGG | + | chr4.1:18670030-18670049 | MS.gene36458:CDS | 35.0% |
| !! | TCAACTTGTTATCCTAAACC+AGG | + | chr4.1:18671012-18671031 | MS.gene36458:CDS | 35.0% |
| AACAATAGCCAAGAACACAC+TGG | + | chr4.1:18671084-18671103 | MS.gene36458:CDS | 40.0% | |
| AAGAACACACTGGAGTAATG+GGG | + | chr4.1:18671094-18671113 | MS.gene36458:CDS | 40.0% | |
| AATGAGACAGGCTACATTGT+AGG | + | chr4.1:18670985-18671004 | MS.gene36458:CDS | 40.0% | |
| AATTACCTGTCCATATAGGG+TGG | - | chr4.1:18670599-18670618 | None:intergenic | 40.0% | |
| ACAAGTCTCCCATTTCAAAC+TGG | + | chr4.1:18670523-18670542 | MS.gene36458:CDS | 40.0% | |
| ACACAAGAAATGATGGCCAA+AGG | + | chr4.1:18669615-18669634 | MS.gene36458:CDS | 40.0% | |
| ACAGATATTCCGGAACCTTT+CGG | + | chr4.1:18669743-18669762 | MS.gene36458:CDS | 40.0% | |
| ACAGTCCTAGATTTCAAGCT+CGG | - | chr4.1:18670267-18670286 | None:intergenic | 40.0% | |
| ACATAGCCACCAGTTTGAAA+TGG | - | chr4.1:18670535-18670554 | None:intergenic | 40.0% | |
| ATCTCTATACCGAAAGGTTC+CGG | - | chr4.1:18669755-18669774 | None:intergenic | 40.0% | |
| ATTGTGAAAGTGAGGAACAG+TGG | + | chr4.1:18669656-18669675 | MS.gene36458:CDS | 40.0% | |
| CAAGAACACACTGGAGTAAT+GGG | + | chr4.1:18671093-18671112 | MS.gene36458:CDS | 40.0% | |
| CAGACTGTTGGATCAAAGAT+CGG | - | chr4.1:18670290-18670309 | None:intergenic | 40.0% | |
| CTTAGATAGAGGCTTCTCTT+TGG | - | chr4.1:18670007-18670026 | None:intergenic | 40.0% | |
| CTTGGACAATACTTTGGCAT+TGG | + | chr4.1:18669698-18669717 | MS.gene36458:CDS | 40.0% | |
| GAACCTTTCGGTATAGAGAT+AGG | + | chr4.1:18669755-18669774 | MS.gene36458:CDS | 40.0% | |
| GAACTCTGATCATGATTGCA+AGG | + | chr4.1:18670132-18670151 | MS.gene36458:CDS | 40.0% | |
| GTCACACACACAAGAAATGA+TGG | + | chr4.1:18669608-18669627 | MS.gene36458:CDS | 40.0% | |
| GTGTCAGTACTTCCAACTAA+TGG | - | chr4.1:18670623-18670642 | None:intergenic | 40.0% | |
| TATGGAAATGGAAACGAAGC+AGG | + | chr4.1:18670961-18670980 | MS.gene36458:CDS | 40.0% | |
| TCCATACCACGTTATGGAAA+TGG | + | chr4.1:18670949-18670968 | MS.gene36458:CDS | 40.0% | |
| TCCATTTCCATAACGTGGTA+TGG | - | chr4.1:18670953-18670972 | None:intergenic | 40.0% | |
| TCGGTGATAATTAGCAGTTG+AGG | + | chr4.1:18670801-18670820 | MS.gene36458:intron | 40.0% | |
| TCGTTTCCATTTCCATAACG+TGG | - | chr4.1:18670958-18670977 | None:intergenic | 40.0% | |
| TGGAGATAAGTTTCATGGAG+AGG | - | chr4.1:18669551-18669570 | None:intergenic | 40.0% | |
| TGTTCTTCCATACCACGTTA+TGG | + | chr4.1:18670943-18670962 | MS.gene36458:CDS | 40.0% | |
| TTACGGTGGATGAATATGGA+AGG | + | chr4.1:18669900-18669919 | MS.gene36458:CDS | 40.0% | |
| TTCATGATTTCAGGATGGGA+GGG | + | chr4.1:18670915-18670934 | MS.gene36458:intron | 40.0% | |
| TTGAGTGCAATATGACCTCT+TGG | - | chr4.1:18669485-18669504 | None:intergenic | 40.0% | |
| TTTCATGATTTCAGGATGGG+AGG | + | chr4.1:18670914-18670933 | MS.gene36458:intron | 40.0% | |
| ! | AATGGGGCTTTTCTACCTAT+TGG | + | chr4.1:18671110-18671129 | MS.gene36458:CDS | 40.0% |
| ! | CATAGCCACCAGTTTGAAAT+GGG | - | chr4.1:18670534-18670553 | None:intergenic | 40.0% |
| ! | CGAGCTTTATAATGTTACGG+TGG | + | chr4.1:18669886-18669905 | MS.gene36458:CDS | 40.0% |
| ! | GAGTAGAATGTCTGAGTTGA+TGG | - | chr4.1:18671155-18671174 | None:intergenic | 40.0% |
| ! | TTGTACACAGTGCAAGTTGA+AGG | + | chr4.1:18669967-18669986 | MS.gene36458:CDS | 40.0% |
| !! | CAAGTTGAAGGAAGGTTTTG+AGG | + | chr4.1:18669979-18669998 | MS.gene36458:CDS | 40.0% |
| !! | CAGAACTTTGAAGCATCCTT+TGG | - | chr4.1:18669634-18669653 | None:intergenic | 40.0% |
| !! | GAATGTCTGAGTTGATGGTA+TGG | - | chr4.1:18671150-18671169 | None:intergenic | 40.0% |
| AACGAAGCAGGAAATGAGAC+AGG | + | chr4.1:18670973-18670992 | MS.gene36458:CDS | 45.0% | |
| AATCCTGCAGAGGTTTCAGA+AGG | + | chr4.1:18669779-18669798 | MS.gene36458:CDS | 45.0% | |
| ACAAACCACAAGGAGCGAAA+TGG | + | chr4.1:18670481-18670500 | MS.gene36458:CDS | 45.0% | |
| ACTGGTGGCTATGTGATCTA+TGG | + | chr4.1:18670541-18670560 | MS.gene36458:CDS | 45.0% | |
| AGAAGGGTCCGAGGATAAAT+GGG | + | chr4.1:18669796-18669815 | MS.gene36458:CDS | 45.0% | |
| AGACGTATATGAGTCGGACA+CGG | + | chr4.1:18670653-18670672 | MS.gene36458:intron | 45.0% | |
| AGAGATAGGTAATCCTGCAG+AGG | + | chr4.1:18669769-18669788 | MS.gene36458:CDS | 45.0% | |
| AGGAACAGTGGCATATGTCA+GGG | + | chr4.1:18669668-18669687 | MS.gene36458:CDS | 45.0% | |
| AGGAACGGCAACAGATATTC+CGG | + | chr4.1:18669733-18669752 | MS.gene36458:CDS | 45.0% | |
| AGGTCCTAACTCGAATTTCG+GGG | - | chr4.1:18669423-18669442 | None:intergenic | 45.0% | |
| AGTCTCCCATTTCAAACTGG+TGG | + | chr4.1:18670526-18670545 | MS.gene36458:CDS | 45.0% | |
| ATCCTGCAGAGGTTTCAGAA+GGG | + | chr4.1:18669780-18669799 | MS.gene36458:CDS | 45.0% | |
| ATCTTGCAACACCCCAATGA+TGG | - | chr4.1:18669571-18669590 | None:intergenic | 45.0% | |
| ATCTTGCAGCACAAACCACA+AGG | + | chr4.1:18670471-18670490 | MS.gene36458:CDS | 45.0% | |
| CAGGTCCTAACTCGAATTTC+GGG | - | chr4.1:18669424-18669443 | None:intergenic | 45.0% | |
| CATCAGCATTCAGGTGGAAT+TGG | + | chr4.1:18670571-18670590 | MS.gene36458:CDS | 45.0% | |
| CCAAGAACACACTGGAGTAA+TGG | + | chr4.1:18671092-18671111 | MS.gene36458:CDS | 45.0% | |
| CCAGGTCCTAACTCGAATTT+CGG | - | chr4.1:18669425-18669444 | None:intergenic | 45.0% | |
| CCATTACTCCAGTGTGTTCT+TGG | - | chr4.1:18671095-18671114 | None:intergenic | 45.0% | |
| GGAATTGGATCCACCCTATA+TGG | + | chr4.1:18670586-18670605 | MS.gene36458:CDS | 45.0% | |
| GGCCAGATTATAAAGGAGGT+TGG | + | chr4.1:18669930-18669949 | MS.gene36458:CDS | 45.0% | |
| GGGTATCATAATGAGCGACA+TGG | + | chr4.1:18670416-18670435 | MS.gene36458:intron | 45.0% | |
| GGTTCCGTCACGATAATTGA+TGG | + | chr4.1:18671033-18671052 | MS.gene36458:CDS | 45.0% | |
| GTTCATGCCATTGATACACG+TGG | + | chr4.1:18669827-18669846 | MS.gene36458:CDS | 45.0% | |
| ! | ACACAGTGCAAGTTGAAGGA+AGG | + | chr4.1:18669971-18669990 | MS.gene36458:CDS | 45.0% |
| ! | GTTGCTGTTCTGCAACCAAT+AGG | - | chr4.1:18671128-18671147 | None:intergenic | 45.0% |
| ! | TCAATTATCGTGACGGAACC+TGG | - | chr4.1:18671033-18671052 | None:intergenic | 45.0% |
| ! | TTGTCCCCGAAATTCGAGTT+AGG | + | chr4.1:18669416-18669435 | MS.gene36458:CDS | 45.0% |
| !! | GCTGAAGTAGTTGATGATGC+TGG | + | chr4.1:18669515-18669534 | MS.gene36458:CDS | 45.0% |
| ACGCAATCAGCACAGACTGT+TGG | - | chr4.1:18670302-18670321 | None:intergenic | 50.0% | |
| CAGAAGGGTCCGAGGATAAA+TGG | + | chr4.1:18669795-18669814 | MS.gene36458:CDS | 50.0% | |
| GAGGAACAGTGGCATATGTC+AGG | + | chr4.1:18669667-18669686 | MS.gene36458:CDS | 50.0% | |
| GTGGCGTGGAGGATAAGTTA+GGG | + | chr4.1:18669846-18669865 | MS.gene36458:CDS | 50.0% | |
| GTTGCACATCAGCATTCAGG+TGG | + | chr4.1:18670565-18670584 | MS.gene36458:CDS | 50.0% | |
| TGGATCCACCCTATATGGAC+AGG | + | chr4.1:18670591-18670610 | MS.gene36458:CDS | 50.0% | |
| TGGATCCGAAACACGAGGAA+CGG | + | chr4.1:18669718-18669737 | MS.gene36458:CDS | 50.0% | |
| TGTAGAGTCTCTCGACTGCT+AGG | + | chr4.1:18670325-18670344 | MS.gene36458:intron | 50.0% | |
| TGTTGCCGTTCCTCGTGTTT+CGG | - | chr4.1:18669726-18669745 | None:intergenic | 50.0% | |
| ! | ATCGTGACGGAACCTGGTTT+AGG | - | chr4.1:18671027-18671046 | None:intergenic | 50.0% |
| ! | CCGAAATTCGAGTTAGGACC+TGG | + | chr4.1:18669422-18669441 | MS.gene36458:CDS | 50.0% |
| ! | GGTGTTGCACATCAGCATTC+AGG | + | chr4.1:18670562-18670581 | MS.gene36458:CDS | 50.0% |
| AGAGGTTTCAGAAGGGTCCG+AGG | + | chr4.1:18669787-18669806 | MS.gene36458:CDS | 55.0% | |
| CACAGCCATTTCGCTCCTTG+TGG | - | chr4.1:18670489-18670508 | None:intergenic | 55.0% | |
| CATTGATACACGTGGCGTGG+AGG | + | chr4.1:18669835-18669854 | MS.gene36458:CDS | 55.0% | |
| CGTGGCGTGGAGGATAAGTT+AGG | + | chr4.1:18669845-18669864 | MS.gene36458:CDS | 55.0% | |
| CTCCACGCCACGTGTATCAA+TGG | - | chr4.1:18669837-18669856 | None:intergenic | 55.0% | |
| TGCCATTGATACACGTGGCG+TGG | + | chr4.1:18669832-18669851 | MS.gene36458:CDS | 55.0% | |
| ! | GGCATTGGATCCGAAACACG+AGG | + | chr4.1:18669713-18669732 | MS.gene36458:CDS | 55.0% |
| !! | GACCCTTCTGAAACCTCTGC+AGG | - | chr4.1:18669785-18669804 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18669302 | 18671221 | 18669302 | ID=MS.gene36458 |
| chr4.1 | mRNA | 18669302 | 18671221 | 18669302 | ID=MS.gene36458.t1;Parent=MS.gene36458 |
| chr4.1 | exon | 18669302 | 18670153 | 18669302 | ID=MS.gene36458.t1.exon1;Parent=MS.gene36458.t1 |
| chr4.1 | CDS | 18669302 | 18670153 | 18669302 | ID=cds.MS.gene36458.t1;Parent=MS.gene36458.t1 |
| chr4.1 | exon | 18670454 | 18670612 | 18670454 | ID=MS.gene36458.t1.exon2;Parent=MS.gene36458.t1 |
| chr4.1 | CDS | 18670454 | 18670612 | 18670454 | ID=cds.MS.gene36458.t1;Parent=MS.gene36458.t1 |
| chr4.1 | exon | 18670928 | 18671221 | 18670928 | ID=MS.gene36458.t1.exon3;Parent=MS.gene36458.t1 |
| chr4.1 | CDS | 18670928 | 18671221 | 18670928 | ID=cds.MS.gene36458.t1;Parent=MS.gene36458.t1 |
| Gene Sequence |
| Protein sequence |
