AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053561


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053561.t1 MTR_4g093830 94.475 362 18 2 1 362 1 360 0.0 654
MS.gene053561.t1 MTR_2g009310 45.885 401 152 18 1 356 3 383 1.01e-85 265
MS.gene053561.t1 MTR_5g064890 41.600 250 128 7 1 244 1 238 7.52e-51 173
MS.gene053561.t1 MTR_8g089880 39.506 243 116 7 33 246 7 247 4.25e-46 159
MS.gene053561.t1 MTR_5g030010 47.857 140 68 2 60 199 59 193 7.64e-37 137
MS.gene053561.t1 MTR_1g070140 33.603 247 129 11 39 272 24 248 4.93e-26 107
MS.gene053561.t1 MTR_8g066780 35.450 189 94 6 50 224 49 223 9.37e-25 103
MS.gene053561.t1 MTR_1g074190 29.293 297 143 13 59 318 53 319 1.05e-24 103
MS.gene053561.t1 MTR_1g043410 30.837 227 126 7 45 255 20 231 1.64e-23 99.8
MS.gene053561.t1 MTR_5g034790 36.538 156 98 1 41 196 30 184 2.37e-23 100
MS.gene053561.t1 MTR_4g106680 37.037 135 84 1 121 254 99 233 9.66e-22 94.4
MS.gene053561.t1 MTR_4g129420 50.602 83 40 1 121 202 110 192 2.32e-21 95.5
MS.gene053561.t1 MTR_8g063660 36.429 140 84 1 60 199 5 139 5.70e-21 92.8
MS.gene053561.t1 MTR_4g120270 33.758 157 91 5 74 230 36 179 6.94e-21 91.3
MS.gene053561.t1 MTR_2g436100 39.837 123 63 3 126 248 91 202 1.09e-20 91.3
MS.gene053561.t1 MTR_6g007737 45.349 86 47 0 121 206 126 211 1.86e-20 92.0
MS.gene053561.t1 MTR_7g096690 30.928 194 113 5 59 245 13 192 2.74e-20 90.9
MS.gene053561.t1 MTR_8g023400 34.831 178 101 5 60 232 32 199 3.33e-20 90.5
MS.gene053561.t1 MTR_3g464780 39.474 152 77 4 118 263 92 234 6.51e-20 88.6
MS.gene053561.t1 MTR_3g110190 52.174 69 33 0 128 196 66 134 9.92e-20 89.4
MS.gene053561.t1 MTR_5g026720 45.349 86 42 2 123 203 57 142 1.51e-19 84.7
MS.gene053561.t1 MTR_3g100400 46.835 79 40 1 125 203 127 203 1.72e-19 89.4
MS.gene053561.t1 MTR_5g064980 45.833 96 46 3 128 220 108 200 3.50e-19 88.2
MS.gene053561.t1 MTR_5g066250 39.759 83 50 0 125 207 131 213 1.50e-18 87.0
MS.gene053561.t1 MTR_6g087150 44.872 78 43 0 125 202 90 167 1.69e-18 86.3
MS.gene053561.t1 MTR_1g082550 43.878 98 52 2 128 222 98 195 3.03e-18 85.5
MS.gene053561.t1 MTR_7g113800 33.540 161 82 3 46 203 31 169 3.78e-18 85.1
MS.gene053561.t1 MTR_3g094000 40.909 88 50 1 118 203 81 168 4.24e-18 81.3
MS.gene053561.t1 MTR_2g096350 40.000 95 46 2 105 197 93 178 5.24e-18 82.4
MS.gene053561.t1 MTR_7g076250 39.286 84 50 1 117 199 52 135 6.00e-18 81.3
MS.gene053561.t1 MTR_3g091620 45.882 85 42 1 113 197 90 170 6.10e-18 84.3
MS.gene053561.t1 MTR_6g055030 32.258 155 84 4 63 214 50 186 6.19e-18 84.0
MS.gene053561.t1 MTR_8g073120 37.895 95 44 2 122 201 51 145 1.34e-17 80.9
MS.gene053561.t1 MTR_7g073200 45.333 75 41 0 128 202 81 155 2.19e-17 79.3
MS.gene053561.t1 MTR_4g063070 41.667 84 47 1 123 204 303 386 2.28e-17 83.2
MS.gene053561.t1 MTR_8g071815 55.000 60 26 1 154 213 90 148 5.30e-17 78.6
MS.gene053561.t1 MTR_3g099650 44.304 79 41 1 128 203 107 185 8.25e-17 81.3
MS.gene053561.t1 MTR_3g078470 42.857 77 42 1 123 197 71 147 2.13e-16 77.8
MS.gene053561.t1 MTR_8g066740 31.792 173 83 7 41 203 8 155 2.22e-16 79.3
MS.gene053561.t1 MTR_5g026730 43.182 88 41 3 126 204 57 144 3.89e-16 75.9
MS.gene053561.t1 MTR_3g078450 38.462 91 54 1 123 211 71 161 6.00e-16 76.3
MS.gene053561.t1 MTR_5g064990 31.902 163 84 5 44 200 48 189 6.19e-16 78.6
MS.gene053561.t1 MTR_8g028465 38.679 106 54 2 105 210 76 170 6.88e-16 75.9
MS.gene053561.t1 MTR_8g092990 43.373 83 37 1 152 224 139 221 8.71e-16 76.3
MS.gene053561.t1 MTR_8g092930 36.111 108 58 2 128 224 112 219 9.66e-16 75.9
MS.gene053561.t1 MTR_5g092790 38.235 102 51 2 100 199 139 230 1.00e-15 76.3
MS.gene053561.t1 MTR_4g056590 41.892 74 40 1 128 201 100 170 1.03e-15 75.1
MS.gene053561.t1 MTR_7g116210 45.714 70 37 1 128 197 10 78 1.06e-15 72.8
MS.gene053561.t1 MTR_7g116220 44.872 78 36 2 128 200 70 145 1.15e-15 74.7
MS.gene053561.t1 MTR_2g055790 39.726 73 41 1 128 200 77 146 1.19e-15 75.1
MS.gene053561.t1 MTR_3g116000 41.892 74 42 1 128 201 79 151 1.44e-15 74.7
MS.gene053561.t1 MTR_7g117540 47.945 73 33 2 129 199 77 146 1.57e-15 76.6
MS.gene053561.t1 MTR_1g100737 50.000 60 29 1 138 197 108 166 1.73e-15 74.7
MS.gene053561.t1 MTR_2g041200 50.704 71 29 2 135 199 84 154 2.03e-15 73.9
MS.gene053561.t1 MTR_2g090950 36.735 98 56 1 128 219 91 188 2.59e-15 75.1
MS.gene053561.t1 MTR_7g116200 45.714 70 37 1 128 197 68 136 2.65e-15 73.6
MS.gene053561.t1 MTR_8g092970 40.964 83 39 1 152 224 129 211 2.74e-15 74.3
MS.gene053561.t1 MTR_3g095560 44.595 74 40 1 128 200 109 182 4.27e-15 74.3
MS.gene053561.t1 MTR_7g079290 31.111 135 74 3 80 210 92 211 4.27e-15 73.9
MS.gene053561.t1 MTR_3g086700 56.000 50 22 0 153 202 74 123 4.44e-15 73.2
MS.gene053561.t1 MTR_8g009190 44.444 72 37 1 132 200 80 151 5.24e-15 75.5
MS.gene053561.t1 MTR_7g079280 36.471 85 52 1 128 210 80 164 5.33e-15 72.8
MS.gene053561.t1 MTR_8g093010 33.645 107 61 2 128 224 107 213 5.54e-15 73.6
MS.gene053561.t1 MTR_8g092960 44.286 70 38 1 128 196 103 172 6.68e-15 73.6
MS.gene053561.t1 MTR_5g024730 34.066 91 58 1 113 201 62 152 6.73e-15 73.2
MS.gene053561.t1 MTR_5g071930 37.302 126 58 4 79 200 27 135 7.24e-15 72.8
MS.gene053561.t1 MTR_7g116180 47.945 73 35 2 128 197 67 139 7.29e-15 72.4
MS.gene053561.t1 MTR_6g055030 52.542 59 28 0 156 214 97 155 8.34e-15 74.3
MS.gene053561.t1 MTR_8g092840 44.286 70 38 1 128 196 113 182 8.95e-15 73.2
MS.gene053561.t1 MTR_3g086730 56.000 50 22 0 153 202 74 123 1.02e-14 73.2
MS.gene053561.t1 MTR_8g092985 44.286 70 38 1 128 196 111 180 1.06e-14 72.8
MS.gene053561.t1 MTR_2g035800 39.773 88 49 1 116 199 60 147 1.62e-14 70.9
MS.gene053561.t1 MTR_1g492830 38.824 85 51 1 128 211 61 145 2.04e-14 72.0
MS.gene053561.t1 MTR_2g044570 52.632 57 26 1 143 199 73 128 2.05e-14 73.6
MS.gene053561.t1 MTR_1g070425 47.945 73 35 2 128 197 68 140 2.08e-14 71.2
MS.gene053561.t1 MTR_7g108855 41.096 73 41 1 129 199 67 139 4.27e-14 70.5
MS.gene053561.t1 MTR_4g022410 29.747 158 87 4 44 200 25 159 8.83e-14 69.7
MS.gene053561.t1 MTR_8g019710 50.980 51 25 0 149 199 49 99 9.45e-14 68.2
MS.gene053561.t1 MTR_3g114500 45.455 66 34 1 134 197 49 114 1.11e-13 67.8
MS.gene053561.t1 MTR_5g082940 34.524 84 52 2 128 209 75 157 1.55e-13 68.6
MS.gene053561.t1 MTR_4g030070 36.986 73 45 1 128 200 85 156 1.86e-13 69.3
MS.gene053561.t1 MTR_5g076990 30.178 169 91 6 41 203 8 155 2.32e-13 70.5
MS.gene053561.t1 MTR_5g022920 60.465 43 17 0 154 196 189 231 2.75e-13 68.9
MS.gene053561.t1 MTR_3g078520 42.029 69 37 1 129 197 81 146 3.00e-13 67.4
MS.gene053561.t1 MTR_5g092750 50.877 57 28 0 144 200 175 231 3.39e-13 68.9
MS.gene053561.t1 MTR_1g090480 29.730 148 76 6 77 213 29 159 3.47e-13 67.4
MS.gene053561.t1 MTR_1g026070 40.580 69 31 1 151 219 68 126 3.59e-13 66.2
MS.gene053561.t1 MTR_2g090905 47.458 59 25 1 153 211 70 122 4.08e-13 66.2
MS.gene053561.t1 MTR_1g056350 45.614 57 31 0 154 210 103 159 6.95e-13 66.6
MS.gene053561.t1 MTR_8g032690 38.806 67 38 1 133 199 1 64 1.20e-12 64.3
MS.gene053561.t1 MTR_8g074900 58.140 43 18 0 154 196 180 222 2.09e-12 66.2
MS.gene053561.t1 MTR_3g071300 33.750 80 49 1 128 203 76 155 2.96e-12 64.7
MS.gene053561.t1 MTR_4g094725 37.079 89 50 2 114 196 60 148 6.80e-12 63.2
MS.gene053561.t1 MTR_8g099495 38.554 83 47 2 116 196 309 389 6.99e-12 66.6
MS.gene053561.t1 MTR_3g087900 37.255 102 55 4 140 240 57 150 8.14e-12 63.2
MS.gene053561.t1 MTR_5g009190 40.506 79 43 2 120 196 260 336 1.15e-11 65.5
MS.gene053561.t1 MTR_8g099515 44.286 70 32 2 134 196 310 379 1.26e-11 65.9
MS.gene053561.t1 MTR_5g009200 40.506 79 43 2 120 196 316 392 1.44e-11 65.5
MS.gene053561.t1 MTR_5g009210 40.506 79 43 2 120 196 281 357 1.61e-11 65.5
MS.gene053561.t1 MTR_7g059360 45.000 60 33 0 140 199 144 203 1.66e-11 63.9
MS.gene053561.t1 MTR_8g027745 36.905 84 49 2 128 208 286 368 2.55e-11 64.7
MS.gene053561.t1 MTR_3g012550 27.027 148 98 4 67 211 25 165 4.12e-11 61.6
MS.gene053561.t1 MTR_3g078540 38.158 76 38 2 128 197 50 122 4.24e-11 60.8
MS.gene053561.t1 MTR_3g091200 34.343 99 59 3 103 197 278 374 6.20e-11 63.5
MS.gene053561.t1 MTR_1g090460 47.059 51 27 0 154 204 95 145 6.60e-11 60.5
MS.gene053561.t1 MTR_4g116460 32.955 88 45 4 125 199 443 529 8.65e-11 63.5
MS.gene053561.t1 MTR_4g116460 32.955 88 45 4 125 199 400 486 9.10e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053561.t1 AT1G72220 48.824 170 85 2 64 231 86 255 4.25e-46 162
MS.gene053561.t1 AT4G33565 48.235 170 73 2 116 285 179 333 6.94e-41 147
MS.gene053561.t1 AT5G10380 69.880 83 25 0 119 201 100 182 3.70e-37 136
MS.gene053561.t1 AT3G03550 40.104 192 103 4 20 201 17 206 8.25e-36 134
MS.gene053561.t1 AT5G17600 36.437 247 117 7 61 284 59 288 8.93e-35 131
MS.gene053561.t1 AT4G17905 33.212 274 130 9 22 254 18 279 1.04e-30 119
MS.gene053561.t1 AT4G17905 33.212 274 130 9 22 254 44 305 1.77e-30 119
MS.gene053561.t1 AT5G43420 30.638 235 111 9 56 263 46 255 2.86e-23 100
MS.gene053561.t1 AT1G23980 32.955 176 100 3 39 199 17 189 3.95e-23 99.4
MS.gene053561.t1 AT2G20030 31.214 173 93 4 37 202 19 172 7.80e-23 99.0
MS.gene053561.t1 AT1G72200 35.681 213 105 9 67 275 63 247 3.88e-21 94.4
MS.gene053561.t1 AT1G04360 31.818 198 94 7 56 237 53 225 1.12e-20 92.8
MS.gene053561.t1 AT2G18650 50.617 81 39 1 121 200 92 172 3.07e-20 91.7
MS.gene053561.t1 AT4G30400 51.948 77 36 1 121 196 100 176 5.20e-20 91.3
MS.gene053561.t1 AT4G28890 42.157 102 59 0 125 226 94 195 1.22e-19 90.1
MS.gene053561.t1 AT5G57750 55.072 69 30 1 129 196 96 164 2.84e-19 85.5
MS.gene053561.t1 AT4G10150 31.414 191 112 5 68 253 31 207 2.93e-19 86.3
MS.gene053561.t1 AT5G05810 48.101 79 39 1 125 203 117 193 3.15e-19 88.6
MS.gene053561.t1 AT4G40070 29.500 200 102 8 40 225 30 204 4.62e-19 87.4
MS.gene053561.t1 AT1G22500 32.948 173 92 6 51 219 32 184 1.00e-18 87.0
MS.gene053561.t1 AT2G47560 49.351 77 37 1 125 199 77 153 1.01e-18 84.3
MS.gene053561.t1 AT5G01880 38.144 97 53 1 104 200 62 151 2.12e-18 81.6
MS.gene053561.t1 AT3G48030 48.052 77 39 1 121 196 95 171 9.15e-18 82.8
MS.gene053561.t1 AT3G62690 43.333 90 46 1 129 213 88 177 1.02e-17 82.4
MS.gene053561.t1 AT3G05200 44.318 88 46 2 128 212 99 186 1.28e-17 84.0
MS.gene053561.t1 AT1G35330 45.570 79 40 1 128 203 100 178 1.72e-17 82.8
MS.gene053561.t1 AT3G48030 48.052 77 39 1 121 196 173 249 2.19e-17 82.8
MS.gene053561.t1 AT3G18930 34.899 149 71 5 128 251 120 267 2.68e-17 83.2
MS.gene053561.t1 AT3G18930 34.899 149 71 5 128 251 120 267 2.68e-17 83.2
MS.gene053561.t1 AT3G18930 34.899 149 71 5 128 251 120 267 2.68e-17 83.2
MS.gene053561.t1 AT4G10160 35.115 131 71 5 128 253 72 193 5.16e-17 79.7
MS.gene053561.t1 AT2G35910 41.667 84 49 0 127 210 120 203 5.48e-17 79.3
MS.gene053561.t1 AT5G40250 42.697 89 41 1 121 199 100 188 5.57e-17 81.6
MS.gene053561.t1 AT4G09120 39.216 102 56 3 128 225 94 193 1.55e-16 80.1
MS.gene053561.t1 AT3G10910 31.288 163 93 5 42 202 17 162 1.67e-16 77.0
MS.gene053561.t1 AT5G66070 39.806 103 56 2 94 196 122 218 1.72e-16 78.2
MS.gene053561.t1 AT5G66070 39.806 103 56 2 94 196 122 218 1.72e-16 78.2
MS.gene053561.t1 AT2G27940 36.458 96 58 2 116 211 105 197 2.02e-16 78.2
MS.gene053561.t1 AT1G53820 42.105 76 43 1 124 199 91 165 2.57e-16 79.3
MS.gene053561.t1 AT4G15975 33.571 140 74 5 128 265 51 173 2.75e-16 77.8
MS.gene053561.t1 AT1G49210 45.946 74 39 1 128 200 108 181 2.81e-16 77.4
MS.gene053561.t1 AT5G27420 40.860 93 47 3 128 217 95 182 5.56e-16 79.0
MS.gene053561.t1 AT3G18773 40.860 93 47 2 116 200 84 176 9.28e-16 75.9
MS.gene053561.t1 AT5G05280 43.836 73 40 1 128 200 88 159 9.83e-16 74.7
MS.gene053561.t1 AT4G09110 40.506 79 44 1 128 203 94 172 1.16e-15 77.0
MS.gene053561.t1 AT3G16720 47.143 70 36 1 128 197 94 162 1.33e-15 77.0
MS.gene053561.t1 AT2G34990 41.772 79 43 1 128 203 89 167 1.39e-15 77.0
MS.gene053561.t1 AT2G34990 41.772 79 43 1 128 203 67 145 1.51e-15 76.6
MS.gene053561.t1 AT1G49200 38.043 92 50 2 116 200 91 182 1.90e-15 75.1
MS.gene053561.t1 AT3G60220 43.421 76 38 2 130 201 90 164 2.83e-15 76.3
MS.gene053561.t1 AT1G28040 34.868 152 77 6 49 196 162 295 2.88e-15 75.9
MS.gene053561.t1 AT1G72310 42.466 73 41 1 128 200 102 173 3.08e-15 76.3
MS.gene053561.t1 AT2G35000 32.143 140 82 4 66 202 54 183 3.78e-15 76.3
MS.gene053561.t1 AT1G20823 30.435 161 91 6 45 201 15 158 4.51e-15 73.6
MS.gene053561.t1 AT1G49220 47.887 71 34 2 128 196 108 177 5.32e-15 74.3
MS.gene053561.t1 AT4G35840 38.318 107 57 3 94 196 132 233 7.73e-15 73.6
MS.gene053561.t1 AT4G17920 31.250 160 85 6 44 196 11 152 9.68e-15 74.3
MS.gene053561.t1 AT1G76410 41.026 78 39 2 128 201 77 151 9.70e-15 72.4
MS.gene053561.t1 AT4G09100 42.105 76 41 1 128 200 56 131 1.15e-14 70.5
MS.gene053561.t1 AT1G49230 31.496 127 77 3 118 243 95 212 1.46e-14 72.4
MS.gene053561.t1 AT2G17730 36.697 109 62 2 94 199 137 241 1.52e-14 72.8
MS.gene053561.t1 AT1G33480 39.726 73 43 1 128 200 75 146 1.64e-14 73.2
MS.gene053561.t1 AT2G46493 37.647 85 51 1 114 196 96 180 2.66e-14 70.9
MS.gene053561.t1 AT5G66070 62.791 43 16 0 154 196 200 242 3.04e-14 72.0
MS.gene053561.t1 AT2G46160 30.216 139 74 3 90 211 63 195 3.47e-14 71.2
MS.gene053561.t1 AT2G46160 30.216 139 74 3 90 211 63 195 3.47e-14 71.2
MS.gene053561.t1 AT2G25410 41.379 87 48 1 114 197 284 370 4.41e-14 73.2
MS.gene053561.t1 AT2G46494 30.556 144 81 4 55 196 232 358 5.66e-14 72.8
MS.gene053561.t1 AT2G37580 38.824 85 51 1 118 201 105 189 6.47e-14 70.9
MS.gene053561.t1 AT3G19140 37.931 87 51 2 112 196 36 121 6.68e-14 68.9
MS.gene053561.t1 AT2G35420 26.708 161 97 3 66 222 26 169 6.91e-14 71.2
MS.gene053561.t1 AT3G61550 35.789 95 50 2 128 211 99 193 9.18e-14 70.1
MS.gene053561.t1 AT2G42360 24.064 187 112 5 60 235 32 199 1.23e-13 70.1
MS.gene053561.t1 AT2G42350 43.662 71 37 2 128 197 75 143 1.44e-13 69.7
MS.gene053561.t1 AT4G09130 34.862 109 61 4 109 210 74 179 2.20e-13 70.9
MS.gene053561.t1 AT1G32361 37.363 91 46 3 128 210 130 217 5.40e-13 69.7
MS.gene053561.t1 AT5G46650 32.099 162 92 6 39 196 10 157 5.62e-13 68.9
MS.gene053561.t1 AT2G46495 42.105 76 41 1 124 196 259 334 9.96e-13 68.9
MS.gene053561.t1 AT2G17450 28.161 174 93 7 36 205 6 151 1.11e-12 66.2
MS.gene053561.t1 AT2G46495 42.105 76 41 1 124 196 287 362 1.40e-12 68.6
MS.gene053561.t1 AT5G42200 27.338 139 77 2 65 197 27 147 1.40e-12 65.5
MS.gene053561.t1 AT5G06490 46.552 58 27 1 154 211 129 182 1.41e-12 66.2
MS.gene053561.t1 AT4G35480 53.333 45 21 0 152 196 111 155 2.61e-12 65.9
MS.gene053561.t1 AT5G41400 38.667 75 41 3 137 206 85 159 5.12e-12 64.3
MS.gene053561.t1 AT5G07040 29.323 133 76 3 67 196 19 136 9.78e-12 63.2
MS.gene053561.t1 AT5G47610 41.935 62 36 0 152 213 105 166 1.34e-11 62.8
MS.gene053561.t1 AT5G53110 40.845 71 40 1 128 196 302 372 1.72e-11 65.5
MS.gene053561.t1 AT3G14320 37.681 69 42 1 128 196 63 130 2.21e-11 63.2
MS.gene053561.t1 AT5G58580 40.000 75 44 1 128 201 111 185 5.38e-11 63.5
MS.gene053561.t1 AT1G74410 47.826 46 24 0 154 199 176 221 5.57e-11 62.4
MS.gene053561.t1 AT4G24015 44.776 67 36 1 135 201 87 152 9.64e-11 60.5

Find 77 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGTTGTTGACCCTTTA+AGG 0.066857 4.4:+21224920 MS.gene053561:CDS
TCAAAGAAGGTTGGTGAAAA+TGG 0.155387 4.4:+21225267 MS.gene053561:CDS
CCCTTTAAGGATTCCATCTA+TGG 0.191623 4.4:+21224933 MS.gene053561:CDS
GGGGAAGAGGTTGAGGAAAA+TGG 0.241268 4.4:+21225060 MS.gene053561:CDS
TCCATAGATGGAATCCTTAA+AGG 0.244407 4.4:-21224934 None:intergenic
AAGTTCTCAGATTGAAGTTT+TGG 0.282980 4.4:+21224975 MS.gene053561:CDS
AATCTCAAAGGAATTGTAAT+AGG 0.307747 4.4:+21225211 MS.gene053561:CDS
TCAAGAGAAACTGATCTTCT+TGG 0.328689 4.4:-21225135 None:intergenic
TGGTGGTGGTGGAGGGTTGT+AGG 0.328876 4.4:-21224446 None:intergenic
TCAGGAGATGGTGGTGGTGG+AGG 0.336971 4.4:-21224454 None:intergenic
CAAAGAAGGTTGGTGAAAAT+GGG 0.354182 4.4:+21225268 MS.gene053561:CDS
AAAAGTGAAGGTTTGATTGA+TGG 0.355415 4.4:+21224757 MS.gene053561:CDS
GGAAGCAGGGGAAGAGGTTG+AGG 0.357464 4.4:+21225053 MS.gene053561:CDS
GGTTGGTGAAAATGGGAATA+TGG 0.357666 4.4:+21225275 MS.gene053561:CDS
TGAAGATGAGAGTTCAGCTT+TGG 0.371602 4.4:+21225095 MS.gene053561:CDS
CTTAAAGGGTCAACAACAAT+AGG 0.379511 4.4:-21224919 None:intergenic
TGATCAGGAGATGGTGGTGG+TGG 0.380317 4.4:-21224457 None:intergenic
GTGCTCCTTGTTCAATGAAT+AGG 0.390573 4.4:+21225310 MS.gene053561:CDS
GAGCACAATCAAAAGCTTCT+TGG 0.392756 4.4:-21225402 None:intergenic
ATTTACCTTGTATTGATACT+TGG 0.395348 4.4:+21224860 MS.gene053561:CDS
TGAACAAATTGTTTCAAAGA+AGG 0.404773 4.4:+21225254 MS.gene053561:CDS
AGAAGAGGAAGCAGGGGAAG+AGG 0.409066 4.4:+21225047 MS.gene053561:CDS
AGAAATGGAGAAGAGGAAGC+AGG 0.412660 4.4:+21225039 MS.gene053561:CDS
TTCTTCTTGACCTGCTCCTA+CGG 0.420831 4.4:-21224582 None:intergenic
CAGGAGATGGTGGTGGTGGA+GGG 0.426211 4.4:-21224453 None:intergenic
TTGTAATAGGGAGCAGGTAG+GGG 0.445099 4.4:+21225224 MS.gene053561:CDS
AAAACATTAGGCTCCATAGA+TGG 0.447069 4.4:-21224946 None:intergenic
CAAATTGTTTCAAAGAAGGT+TGG 0.451324 4.4:+21225258 MS.gene053561:CDS
ATTGTAATAGGGAGCAGGTA+GGG 0.455069 4.4:+21225223 MS.gene053561:CDS
TAGTAGGTGTTTACCATTGA+AGG 0.461942 4.4:-21225340 None:intergenic
TGTTTGTTGCCTTGTTAACA+AGG 0.464805 4.4:-21224608 None:intergenic
ATCTCAAAGGAATTGTAATA+GGG 0.465232 4.4:+21225212 MS.gene053561:CDS
CTGTTGTAGACCACCCCATA+TGG 0.468648 4.4:+21224671 MS.gene053561:CDS
AGGAGTTCGAATATACCATA+TGG 0.469214 4.4:-21224686 None:intergenic
GTTGTTGCTCAATTGAGAAA+TGG 0.469323 4.4:+21225024 MS.gene053561:CDS
GAAATGGAGAAGAGGAAGCA+GGG 0.471834 4.4:+21225040 MS.gene053561:CDS
TGTAGGTATTGCAGAATTTG+AGG 0.479407 4.4:-21224429 None:intergenic
CCATAGATGGAATCCTTAAA+GGG 0.486494 4.4:-21224933 None:intergenic
AGATTCCACTGATAGAAACT+TGG 0.493224 4.4:-21225193 None:intergenic
TCTTCTTGACCTGCTCCTAC+GGG 0.499195 4.4:-21224581 None:intergenic
GGTTGAGGAAAATGGAAGAA+GGG 0.499351 4.4:+21225068 MS.gene053561:CDS
GGAGTTCGAATATACCATAT+GGG 0.499977 4.4:-21224685 None:intergenic
TGAAAAGCATGGTTACACTT+TGG 0.507153 4.4:-21224838 None:intergenic
GTGTGATCAGGAGATGGTGG+TGG 0.507274 4.4:-21224460 None:intergenic
TGTTTGGTGTGATCAGGAGA+TGG 0.511292 4.4:-21224466 None:intergenic
AGGTTGAGGAAAATGGAAGA+AGG 0.513557 4.4:+21225067 MS.gene053561:CDS
AATTGTAATAGGGAGCAGGT+AGG 0.518030 4.4:+21225222 MS.gene053561:CDS
ATTAACACAGTTTGAGCTTG+TGG 0.518475 4.4:-21224404 None:intergenic
GTTAAGTATAAGAAAAGTGA+AGG 0.524340 4.4:+21224745 MS.gene053561:CDS
ATATGGTATATTCGAACTCC+TGG 0.524437 4.4:+21224688 MS.gene053561:CDS
ACAGTTTGAGCTTGTGGCTG+TGG 0.524699 4.4:-21224398 None:intergenic
TACTACTATACAAGGATAGT+AGG 0.532280 4.4:-21225356 None:intergenic
AATAGGTCAAGATCCTTCAA+TGG 0.532700 4.4:+21225327 MS.gene053561:CDS
CACAATCAAAAGCTTCTTGG+TGG 0.533808 4.4:-21225399 None:intergenic
AAATGGAGAAGAGGAAGCAG+GGG 0.534145 4.4:+21225041 MS.gene053561:CDS
AAGGAATTGTAATAGGGAGC+AGG 0.536998 4.4:+21225218 MS.gene053561:CDS
GAAGAAGAGCCTTGTTAACA+AGG 0.542380 4.4:+21224599 MS.gene053561:CDS
AAAACTTATGATCAAGTAAG+TGG 0.542639 4.4:-21224497 None:intergenic
CATCAACTGTCCTATGTGTA+GGG 0.546834 4.4:+21224894 MS.gene053561:CDS
GTTGGTGAGGAACATGATGA+TGG 0.546994 4.4:+21224646 MS.gene053561:CDS
ATAATTGATTGTTGAAGACC+AGG 0.553777 4.4:-21224706 None:intergenic
CTAAGCCAAGTATCAATACA+AGG 0.556828 4.4:-21224865 None:intergenic
ACATCAACTGTCCTATGTGT+AGG 0.558434 4.4:+21224893 MS.gene053561:CDS
CTTGACCTATTCATTGAACA+AGG 0.564638 4.4:-21225315 None:intergenic
TCTTTCCAAGTTTCTATCAG+TGG 0.566490 4.4:+21225188 MS.gene053561:CDS
CTTCTGACTACTACTATACA+AGG 0.567275 4.4:-21225364 None:intergenic
TTCTATCAGTGGAATCTCAA+AGG 0.571216 4.4:+21225199 MS.gene053561:CDS
TTGGTGTGATCAGGAGATGG+TGG 0.583740 4.4:-21224463 None:intergenic
ACAAGGCAACAAACAGAACA+TGG 0.590633 4.4:+21224616 MS.gene053561:CDS
TCAATTGAGAAATGGAGAAG+AGG 0.593675 4.4:+21225032 MS.gene053561:CDS
TACAAGGTAAATGAAAAGCA+TGG 0.610439 4.4:-21224849 None:intergenic
ACTTATGATCAAGTAAGTGG+TGG 0.619840 4.4:-21224494 None:intergenic
ACAATAGGAGCCCTACACAT+AGG 0.621522 4.4:-21224904 None:intergenic
AGGCATAGCAGCAAAGAACA+AGG 0.622060 4.4:-21224540 None:intergenic
TTCGAATATACCATATGGGG+TGG 0.638017 4.4:-21224681 None:intergenic
TTGGTGAGGAACATGATGAT+GGG 0.638415 4.4:+21224647 MS.gene053561:CDS
GAGTTCGAATATACCATATG+GGG 0.682696 4.4:-21224684 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAACTTATGATCAAGTAAG+TGG - chr4.4:21224500-21224519 None:intergenic 25.0%
! AATCTCAAAGGAATTGTAAT+AGG + chr4.4:21225211-21225230 MS.gene053561:CDS 25.0%
! ATCTCAAAGGAATTGTAATA+GGG + chr4.4:21225212-21225231 MS.gene053561:CDS 25.0%
! GTTAAGTATAAGAAAAGTGA+AGG + chr4.4:21224745-21224764 MS.gene053561:CDS 25.0%
! TGAACAAATTGTTTCAAAGA+AGG + chr4.4:21225254-21225273 MS.gene053561:CDS 25.0%
!! ATTTACCTTGTATTGATACT+TGG + chr4.4:21224860-21224879 MS.gene053561:CDS 25.0%
!!! ATTGAAGTTTTGGAAAATAG+TGG + chr4.4:21224985-21225004 MS.gene053561:CDS 25.0%
AAAAGTGAAGGTTTGATTGA+TGG + chr4.4:21224757-21224776 MS.gene053561:CDS 30.0%
ATAATTGATTGTTGAAGACC+AGG - chr4.4:21224709-21224728 None:intergenic 30.0%
CAAATTGTTTCAAAGAAGGT+TGG + chr4.4:21225258-21225277 MS.gene053561:CDS 30.0%
GAACTTTCCACAAAAACATT+AGG - chr4.4:21224961-21224980 None:intergenic 30.0%
TACAAGGTAAATGAAAAGCA+TGG - chr4.4:21224852-21224871 None:intergenic 30.0%
TACTACTATACAAGGATAGT+AGG - chr4.4:21225359-21225378 None:intergenic 30.0%
! AAGTTCTCAGATTGAAGTTT+TGG + chr4.4:21224975-21224994 MS.gene053561:CDS 30.0%
AAAACATTAGGCTCCATAGA+TGG - chr4.4:21224949-21224968 None:intergenic 35.0%
AATAGGTCAAGATCCTTCAA+TGG + chr4.4:21225327-21225346 MS.gene053561:CDS 35.0%
ACTTATGATCAAGTAAGTGG+TGG - chr4.4:21224497-21224516 None:intergenic 35.0%
AGATTCCACTGATAGAAACT+TGG - chr4.4:21225196-21225215 None:intergenic 35.0%
AGGAGTTCGAATATACCATA+TGG - chr4.4:21224689-21224708 None:intergenic 35.0%
ATATGGTATATTCGAACTCC+TGG + chr4.4:21224688-21224707 MS.gene053561:CDS 35.0%
ATTAACACAGTTTGAGCTTG+TGG - chr4.4:21224407-21224426 None:intergenic 35.0%
CCATAGATGGAATCCTTAAA+GGG - chr4.4:21224936-21224955 None:intergenic 35.0%
CTAAGCCAAGTATCAATACA+AGG - chr4.4:21224868-21224887 None:intergenic 35.0%
CTTAAAGGGTCAACAACAAT+AGG - chr4.4:21224922-21224941 None:intergenic 35.0%
CTTCTGACTACTACTATACA+AGG - chr4.4:21225367-21225386 None:intergenic 35.0%
CTTGACCTATTCATTGAACA+AGG - chr4.4:21225318-21225337 None:intergenic 35.0%
GAGTTCGAATATACCATATG+GGG - chr4.4:21224687-21224706 None:intergenic 35.0%
GGAGAAAAACTTGACATAGA+AGG - chr4.4:21224563-21224582 None:intergenic 35.0%
GGAGTTCGAATATACCATAT+GGG - chr4.4:21224688-21224707 None:intergenic 35.0%
GTTGTTGCTCAATTGAGAAA+TGG + chr4.4:21225024-21225043 MS.gene053561:CDS 35.0%
TAGTAGGTGTTTACCATTGA+AGG - chr4.4:21225343-21225362 None:intergenic 35.0%
TCAAGAGAAACTGATCTTCT+TGG - chr4.4:21225138-21225157 None:intergenic 35.0%
TCAATTGAGAAATGGAGAAG+AGG + chr4.4:21225032-21225051 MS.gene053561:CDS 35.0%
TCCATAGATGGAATCCTTAA+AGG - chr4.4:21224937-21224956 None:intergenic 35.0%
TCTTTCCAAGTTTCTATCAG+TGG + chr4.4:21225188-21225207 MS.gene053561:CDS 35.0%
TTCTATCAGTGGAATCTCAA+AGG + chr4.4:21225199-21225218 MS.gene053561:CDS 35.0%
! CTATTGTTGTTGACCCTTTA+AGG + chr4.4:21224920-21224939 MS.gene053561:CDS 35.0%
! TGAAAAGCATGGTTACACTT+TGG - chr4.4:21224841-21224860 None:intergenic 35.0%
! TGTAGGTATTGCAGAATTTG+AGG - chr4.4:21224432-21224451 None:intergenic 35.0%
! TGTTTGTTGCCTTGTTAACA+AGG - chr4.4:21224611-21224630 None:intergenic 35.0%
!! CAAAGAAGGTTGGTGAAAAT+GGG + chr4.4:21225268-21225287 MS.gene053561:CDS 35.0%
!! TATGGAGCCTAATGTTTTTG+TGG + chr4.4:21224951-21224970 MS.gene053561:CDS 35.0%
!! TCAAAGAAGGTTGGTGAAAA+TGG + chr4.4:21225267-21225286 MS.gene053561:CDS 35.0%
!!! ACAGAACATGGTTTTGTTGT+TGG + chr4.4:21224628-21224647 MS.gene053561:CDS 35.0%
!!! GAAGTTTTGGAAAATAGTGG+TGG + chr4.4:21224988-21225007 MS.gene053561:CDS 35.0%
AAGGAATTGTAATAGGGAGC+AGG + chr4.4:21225218-21225237 MS.gene053561:CDS 40.0%
AATTGTAATAGGGAGCAGGT+AGG + chr4.4:21225222-21225241 MS.gene053561:CDS 40.0%
ACAAGGCAACAAACAGAACA+TGG + chr4.4:21224616-21224635 MS.gene053561:CDS 40.0%
ACATCAACTGTCCTATGTGT+AGG + chr4.4:21224893-21224912 MS.gene053561:CDS 40.0%
AGGTTGAGGAAAATGGAAGA+AGG + chr4.4:21225067-21225086 MS.gene053561:CDS 40.0%
ATTGTAATAGGGAGCAGGTA+GGG + chr4.4:21225223-21225242 MS.gene053561:CDS 40.0%
CATCAACTGTCCTATGTGTA+GGG + chr4.4:21224894-21224913 MS.gene053561:CDS 40.0%
GGTTGAGGAAAATGGAAGAA+GGG + chr4.4:21225068-21225087 MS.gene053561:CDS 40.0%
GTGCTCCTTGTTCAATGAAT+AGG + chr4.4:21225310-21225329 MS.gene053561:CDS 40.0%
TGAAGATGAGAGTTCAGCTT+TGG + chr4.4:21225095-21225114 MS.gene053561:CDS 40.0%
TTCGAATATACCATATGGGG+TGG - chr4.4:21224684-21224703 None:intergenic 40.0%
TTGGTGAGGAACATGATGAT+GGG + chr4.4:21224647-21224666 MS.gene053561:CDS 40.0%
! ATGTCAAGTTTTTCTCCCGT+AGG + chr4.4:21224566-21224585 MS.gene053561:CDS 40.0%
! CCCTTTAAGGATTCCATCTA+TGG + chr4.4:21224933-21224952 MS.gene053561:CDS 40.0%
!! GAAGAAGAGCCTTGTTAACA+AGG + chr4.4:21224599-21224618 MS.gene053561:CDS 40.0%
!! GGTTGGTGAAAATGGGAATA+TGG + chr4.4:21225275-21225294 MS.gene053561:CDS 40.0%
!!! ACATGGTTTTGTTGTTGGTG+AGG + chr4.4:21224633-21224652 MS.gene053561:CDS 40.0%
!!! GTAAGTGGTGGTTTTGTGTT+TGG - chr4.4:21224485-21224504 None:intergenic 40.0%
!!! GTTTTGTGTTTGGTGTGATC+AGG - chr4.4:21224475-21224494 None:intergenic 40.0%
AAATGGAGAAGAGGAAGCAG+GGG + chr4.4:21225041-21225060 MS.gene053561:CDS 45.0%
ACAATAGGAGCCCTACACAT+AGG - chr4.4:21224907-21224926 None:intergenic 45.0%
AGAAATGGAGAAGAGGAAGC+AGG + chr4.4:21225039-21225058 MS.gene053561:CDS 45.0%
AGGCATAGCAGCAAAGAACA+AGG - chr4.4:21224543-21224562 None:intergenic 45.0%
GAAATGGAGAAGAGGAAGCA+GGG + chr4.4:21225040-21225059 MS.gene053561:CDS 45.0%
TTCTTCTTGACCTGCTCCTA+CGG - chr4.4:21224585-21224604 None:intergenic 45.0%
TTGTAATAGGGAGCAGGTAG+GGG + chr4.4:21225224-21225243 MS.gene053561:CDS 45.0%
! GTTGGTGAGGAACATGATGA+TGG + chr4.4:21224646-21224665 MS.gene053561:CDS 45.0%
!! TGTTTGGTGTGATCAGGAGA+TGG - chr4.4:21224469-21224488 None:intergenic 45.0%
ACAGTTTGAGCTTGTGGCTG+TGG - chr4.4:21224401-21224420 None:intergenic 50.0%
CTGTTGTAGACCACCCCATA+TGG + chr4.4:21224671-21224690 MS.gene053561:CDS 50.0%
GGGGAAGAGGTTGAGGAAAA+TGG + chr4.4:21225060-21225079 MS.gene053561:CDS 50.0%
TCTTCTTGACCTGCTCCTAC+GGG - chr4.4:21224584-21224603 None:intergenic 50.0%
TTGGTGTGATCAGGAGATGG+TGG - chr4.4:21224466-21224485 None:intergenic 50.0%
! AGTTTTTCTCCCGTAGGAGC+AGG + chr4.4:21224572-21224591 MS.gene053561:CDS 50.0%
AGAAGAGGAAGCAGGGGAAG+AGG + chr4.4:21225047-21225066 MS.gene053561:CDS 55.0%
! GTGTGATCAGGAGATGGTGG+TGG - chr4.4:21224463-21224482 None:intergenic 55.0%
!! TGATCAGGAGATGGTGGTGG+TGG - chr4.4:21224460-21224479 None:intergenic 55.0%
GGAAGCAGGGGAAGAGGTTG+AGG + chr4.4:21225053-21225072 MS.gene053561:CDS 60.0%
!! CAGGAGATGGTGGTGGTGGA+GGG - chr4.4:21224456-21224475 None:intergenic 60.0%
!! TCAGGAGATGGTGGTGGTGG+AGG - chr4.4:21224457-21224476 None:intergenic 60.0%
!! TGGTGGTGGTGGAGGGTTGT+AGG - chr4.4:21224449-21224468 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 21224328 21225416 21224328 ID=MS.gene053561
chr4.4 mRNA 21224328 21225416 21224328 ID=MS.gene053561.t1;Parent=MS.gene053561
chr4.4 exon 21224328 21225416 21224328 ID=MS.gene053561.t1.exon1;Parent=MS.gene053561.t1
chr4.4 CDS 21224328 21225416 21224328 ID=cds.MS.gene053561.t1;Parent=MS.gene053561.t1
Gene Sequence

>MS.gene053561

ATGGGACTTTATCACAGAAAACTCTTATCTGAATCTGAATGTGAACGCTTATTATGTCATGATGATTGTACCACAGCCACAAGCTCAAACTGTGTTAATTGCCTCAAATTCTGCAATACCTACAACCCTCCACCACCACCATCTCCTGATCACACCAAACACAAAACCACCACTTACTTGATCATAAGTTTTTCTATTGTAGCAGCTATTTTCCTTGTTCTTTGCTGCTATGCCTTCTATGTCAAGTTTTTCTCCCGTAGGAGCAGGTCAAGAAGAAGAGCCTTGTTAACAAGGCAACAAACAGAACATGGTTTTGTTGTTGGTGAGGAACATGATGATGGGTCTGTTGTAGACCACCCCATATGGTATATTCGAACTCCTGGTCTTCAACAATCAATTATTAATGCAATCACTGTTGTTAAGTATAAGAAAAGTGAAGGTTTGATTGATGGATCAGATTGTTCTGTTTGCTTGAGTGAGTTTGAAGAAGATGAGAATCTTAGACTTTTGCCAAAGTGTAACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCACACATCAACTGTCCTATGTGTAGGGCTCCTATTGTTGTTGACCCTTTAAGGATTCCATCTATGGAGCCTAATGTTTTTGTGGAAAGTTCTCAGATTGAAGTTTTGGAAAATAGTGGTGGAAATGAAGATAGTGTTGTTGCTCAATTGAGAAATGGAGAAGAGGAAGCAGGGGAAGAGGTTGAGGAAAATGGAAGAAGGGTTTGTGAAGATGAGAGTTCAGCTTTGGAGATAGTAAATATGCAGCCAAGAAGATCAGTTTCTCTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTTTCCAAGTTTCTATCAGTGGAATCTCAAAGGAATTGTAATAGGGAGCAGGTAGGGGAAGTCAATGAACAAATTGTTTCAAAGAAGGTTGGTGAAAATGGGAATATGGTAAATATGCATAGTGCTCCTTGTTCAATGAATAGGTCAAGATCCTTCAATGGTAAACACCTACTATCCTTGTATAGTAGTAGTCAGAAGAAGAAAAATGCTCCACCAAGAAGCTTTTGA

Protein sequence

>MS.gene053561.t1

MGLYHRKLLSESECERLLCHDDCTTATSSNCVNCLKFCNTYNPPPPPSPDHTKHKTTTYLIISFSIVAAIFLVLCCYAFYVKFFSRRSRSRRRALLTRQQTEHGFVVGEEHDDGSVVDHPIWYIRTPGLQQSIINAITVVKYKKSEGLIDGSDCSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHINCPMCRAPIVVDPLRIPSMEPNVFVESSQIEVLENSGGNEDSVVAQLRNGEEEAGEEVEENGRRVCEDESSALEIVNMQPRRSVSLDSSSAAKINLALSKFLSVESQRNCNREQVGEVNEQIVSKKVGENGNMVNMHSAPCSMNRSRSFNGKHLLSLYSSSQKKKNAPPRSF