Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36488.t1 | XP_003608499.1 | 98.9 | 275 | 1 | 1 | 1 | 275 | 1 | 273 | 5.30E-141 | 510.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36488.t1 | O64700 | 88.7 | 248 | 28 | 0 | 29 | 276 | 28 | 275 | 7.5e-128 | 458.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36488.t1 | G7JDZ5 | 98.9 | 275 | 1 | 1 | 1 | 275 | 1 | 273 | 3.8e-141 | 510.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060193 | MS.gene36488 | 0.802418 | 5.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36488.t1 | MTR_4g096770 | 98.182 | 275 | 3 | 1 | 1 | 275 | 1 | 273 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36488.t1 | AT2G34470 | 88.710 | 248 | 28 | 0 | 29 | 276 | 28 | 275 | 2.08e-164 | 457 |
| MS.gene36488.t1 | AT2G34470 | 88.710 | 248 | 28 | 0 | 29 | 276 | 29 | 276 | 2.23e-164 | 457 |
Find 73 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGCTTCTTTGTGAATC+TGG | 0.175946 | 4.1:-18314304 | MS.gene36488:CDS |
| AGCCAGTTCCCTGCTGAAAT+TGG | 0.282236 | 4.1:+18313595 | None:intergenic |
| CAGTAACAACCAATGGCTTC+TGG | 0.311045 | 4.1:-18314808 | None:intergenic |
| TCATGCAGCGGGACGCTCTT+AGG | 0.322100 | 4.1:-18313324 | MS.gene36488:CDS |
| ATTTACATCATAGATGTATC+TGG | 0.342801 | 4.1:-18313563 | MS.gene36488:CDS |
| ATTTGCTTCTTTGTGAATCT+GGG | 0.355601 | 4.1:-18314303 | MS.gene36488:CDS |
| ACAGCACGTATCCTTTCTTC+AGG | 0.376767 | 4.1:+18314418 | None:intergenic |
| AGCTCTTCTGCTGAAGAATC+CGG | 0.384758 | 4.1:+18314633 | None:intergenic |
| AGATCAGCTTGTGTGATTCC+AGG | 0.402269 | 4.1:+18313512 | None:intergenic |
| GCTTTCACTGTTGGCATTGG+TGG | 0.407273 | 4.1:-18314577 | MS.gene36488:CDS |
| AAGCATGGTGATTCATTCAT+AGG | 0.410944 | 4.1:-18314724 | MS.gene36488:CDS |
| TTGAAGTCTCTGTTGATAAG+AGG | 0.414084 | 4.1:+18314607 | None:intergenic |
| TGCCAATTTCAGCAGGGAAC+TGG | 0.418166 | 4.1:-18313597 | MS.gene36488:CDS |
| ACTGACCTTGCACAAGCAAT+TGG | 0.422106 | 4.1:-18313361 | MS.gene36488:CDS |
| GAGGATATTAGTATTAATCT+TGG | 0.429762 | 4.1:-18314361 | MS.gene36488:CDS |
| GGGGCCATTTGTATTTGCTC+AGG | 0.445112 | 4.1:-18313290 | MS.gene36488:intron |
| AATGAAAGAGCTTTCACTGT+TGG | 0.460936 | 4.1:-18314586 | MS.gene36488:CDS |
| ACAAGCAATTGGAGCTGACT+TGG | 0.465545 | 4.1:-18313350 | MS.gene36488:CDS |
| ATTCCAGGACCACCTTTCCT+AGG | 0.479928 | 4.1:+18313527 | None:intergenic |
| AGGATACGTGCTGTTGAAAC+TGG | 0.483161 | 4.1:-18314409 | MS.gene36488:CDS |
| ATTCCTAGGAAAGGTGGTCC+TGG | 0.484751 | 4.1:-18313530 | MS.gene36488:CDS |
| ACTTGGCTGCCAATTTCAGC+AGG | 0.489264 | 4.1:-18313604 | MS.gene36488:CDS |
| CTAACCTGAGCAAATACAAA+TGG | 0.498076 | 4.1:+18313286 | None:intergenic |
| GTGCAAGACCGTCGTGGCTA+TGG | 0.498501 | 4.1:+18314683 | None:intergenic |
| ATTGGTGGACCTGTCGGTAC+AGG | 0.499612 | 4.1:-18314562 | MS.gene36488:CDS |
| CAGGCATGGGAAGCAGCCAC+AGG | 0.500416 | 4.1:-18311442 | MS.gene36488:CDS |
| ACGCTCTTAGGATGAGAGAT+GGG | 0.500618 | 4.1:-18313312 | MS.gene36488:CDS |
| TGACTTGGGTGTCATGCAGC+GGG | 0.509346 | 4.1:-18313335 | MS.gene36488:CDS |
| AATCACCATGCTTGTGGTCG+TGG | 0.512675 | 4.1:+18314734 | None:intergenic |
| AAGAATCCGGGAGAGTAGAT+TGG | 0.514564 | 4.1:+18314646 | None:intergenic |
| CGTGGTCGTGGTCGTGGTCG+TGG | 0.514656 | 4.1:+18314752 | None:intergenic |
| CATGCTTGTGGTCGTGGTCG+TGG | 0.517231 | 4.1:+18314740 | None:intergenic |
| GATTCATTCATAGGCGCTGA+TGG | 0.520559 | 4.1:-18314715 | MS.gene36488:CDS |
| ATAAAGCGTTGCCTGAAGAA+AGG | 0.520668 | 4.1:-18314429 | MS.gene36488:CDS |
| TGTGGTCGTGGTCGTGGTCG+TGG | 0.523672 | 4.1:+18314746 | None:intergenic |
| CACGAACCAATCTACTCTCC+CGG | 0.524829 | 4.1:-18314652 | MS.gene36488:CDS |
| CTGGTGGTGATAAAATTCCT+AGG | 0.528983 | 4.1:-18313544 | MS.gene36488:CDS |
| AGAGCTTTCACTGTTGGCAT+TGG | 0.531958 | 4.1:-18314580 | MS.gene36488:CDS |
| GCTCTTCTGCTGAAGAATCC+GGG | 0.539942 | 4.1:+18314634 | None:intergenic |
| CGCTCTTAGGATGAGAGATG+GGG | 0.549938 | 4.1:-18313311 | MS.gene36488:CDS |
| TATTAATCTTGGTCCACTTG+AGG | 0.557139 | 4.1:-18314350 | MS.gene36488:CDS |
| CTGACTTGGGTGTCATGCAG+CGG | 0.557266 | 4.1:-18313336 | MS.gene36488:CDS |
| GATAAAATTCCTAGGAAAGG+TGG | 0.562010 | 4.1:-18313536 | MS.gene36488:CDS |
| GACGCTCTTAGGATGAGAGA+TGG | 0.565202 | 4.1:-18313313 | MS.gene36488:CDS |
| TTTGCTTCTTTGTGAATCTG+GGG | 0.566680 | 4.1:-18314302 | MS.gene36488:CDS |
| TTGCTTCTTTGTGAATCTGG+GGG | 0.567232 | 4.1:-18314301 | MS.gene36488:CDS |
| CGGGAGAGTAGATTGGTTCG+TGG | 0.576489 | 4.1:+18314653 | None:intergenic |
| GAAGCACAATGTTGGAGTAG+AGG | 0.590855 | 4.1:-18311485 | MS.gene36488:CDS |
| GTACAGGTGAAGCACAATGT+TGG | 0.592303 | 4.1:-18311493 | MS.gene36488:intron |
| GGTGATAAAATTCCTAGGAA+AGG | 0.593250 | 4.1:-18313539 | MS.gene36488:CDS |
| TGATCGCCTCCAGAAGCCAT+TGG | 0.597152 | 4.1:+18314799 | None:intergenic |
| CACGACCACGACCACAAGCA+TGG | 0.598530 | 4.1:-18314739 | MS.gene36488:CDS |
| CAGCTCCAATTGCTTGTGCA+AGG | 0.599925 | 4.1:+18313356 | None:intergenic |
| GGGAGAGTAGATTGGTTCGT+GGG | 0.604786 | 4.1:+18314654 | None:intergenic |
| AGATTCGAAAGCTCCTCAAG+TGG | 0.607681 | 4.1:+18314337 | None:intergenic |
| TCCTCATGCTGCTATTCGTG+AGG | 0.609749 | 4.1:-18314380 | MS.gene36488:CDS |
| GTTGGCATTGGTGGACCTGT+CGG | 0.627816 | 4.1:-18314568 | MS.gene36488:CDS |
| CAAGCAATTGGAGCTGACTT+GGG | 0.629109 | 4.1:-18313349 | MS.gene36488:CDS |
| TCAACGGCGTTTCTTCCCTG+TGG | 0.629714 | 4.1:+18311426 | None:intergenic |
| GCTCTTAGGATGAGAGATGG+GGG | 0.629998 | 4.1:-18313310 | MS.gene36488:CDS |
| TAGATTGGTTCGTGGGAGTG+TGG | 0.638881 | 4.1:+18314661 | None:intergenic |
| TGAATGAATCACCATGCTTG+TGG | 0.650133 | 4.1:+18314728 | None:intergenic |
| AGGCATGGGAAGCAGCCACA+GGG | 0.654229 | 4.1:-18311441 | MS.gene36488:CDS |
| CTTGGCTGCCAATTTCAGCA+GGG | 0.659539 | 4.1:-18313603 | MS.gene36488:CDS |
| TCCTCACGAATAGCAGCATG+AGG | 0.664652 | 4.1:+18314379 | None:intergenic |
| TACGTGCTGTTGAAACTGGT+GGG | 0.667714 | 4.1:-18314405 | MS.gene36488:CDS |
| ATACGTGCTGTTGAAACTGG+TGG | 0.670765 | 4.1:-18314406 | MS.gene36488:CDS |
| TACATCATAGATGTATCTGG+TGG | 0.674288 | 4.1:-18313560 | MS.gene36488:CDS |
| TAACAACCAATGGCTTCTGG+AGG | 0.679821 | 4.1:-18314805 | None:intergenic |
| CTCTTAGGATGAGAGATGGG+GGG | 0.699631 | 4.1:-18313309 | MS.gene36488:CDS |
| ACAAAGTGCTAACATCAAAG+CGG | 0.717423 | 4.1:+18314534 | None:intergenic |
| AAAGTGTACCATAGCCACGA+CGG | 0.720385 | 4.1:-18314691 | MS.gene36488:CDS |
| AGTGTGGTGCAAGACCGTCG+TGG | 0.747780 | 4.1:+18314677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAATTAATGTAATTTA+TGG | + | chr4.1:18313484-18313503 | None:intergenic | 10.0% |
| !! | GTTTGATATAAAAAAAACTT+TGG | - | chr4.1:18312568-18312587 | MS.gene36488:intron | 15.0% |
| !! | TCAAACAAAAATACTAAAAT+AGG | - | chr4.1:18313598-18313617 | MS.gene36488:CDS | 15.0% |
| !!! | AATCATGTATTTTGTATTTT+TGG | - | chr4.1:18312116-18312135 | MS.gene36488:intron | 15.0% |
| !!! | ATTTTTGATTTTGATGATTA+TGG | - | chr4.1:18312804-18312823 | MS.gene36488:intron | 15.0% |
| !!! | TCTTAGATTTGTTTTTAAAT+AGG | - | chr4.1:18314240-18314259 | MS.gene36488:intron | 15.0% |
| !! | AAAAATATCATTAGTTACAG+CGG | + | chr4.1:18311742-18311761 | None:intergenic | 20.0% |
| !! | AACAATTCAGTTATTTAAAC+AGG | + | chr4.1:18314122-18314141 | None:intergenic | 20.0% |
| !! | ACAATTCAGTTATTTAAACA+GGG | + | chr4.1:18314121-18314140 | None:intergenic | 20.0% |
| !! | ATAGAACACTTTGAATATTT+GGG | - | chr4.1:18313386-18313405 | MS.gene36488:intron | 20.0% |
| !! | ATATAACTATTTAGTAGAAC+TGG | - | chr4.1:18314444-18314463 | MS.gene36488:CDS | 20.0% |
| !! | ATATAAGCAGAAGTAAAATT+TGG | + | chr4.1:18314428-18314447 | None:intergenic | 20.0% |
| !! | TAACAAGAGTAGTAAAATAT+TGG | + | chr4.1:18314690-18314709 | None:intergenic | 20.0% |
| !! | TATAAGCAGAAGTAAAATTT+GGG | + | chr4.1:18314427-18314446 | None:intergenic | 20.0% |
| !! | TTTCATCTTTCATAATAGTA+AGG | - | chr4.1:18313996-18314015 | MS.gene36488:intron | 20.0% |
| !!! | TTTGATCATATTAGTACTTT+TGG | - | chr4.1:18312340-18312359 | MS.gene36488:intron | 20.0% |
| ! | AAAAAAATCGCTGTGATATA+AGG | + | chr4.1:18314589-18314608 | None:intergenic | 25.0% |
| ! | AAAAGGAAAGGAAATTAACA+CGG | + | chr4.1:18313898-18313917 | None:intergenic | 25.0% |
| ! | AAATTGATTGATAGATCGAT+TGG | - | chr4.1:18314197-18314216 | MS.gene36488:intron | 25.0% |
| ! | AACTAATTGGACTTAATTTC+AGG | - | chr4.1:18312827-18312846 | MS.gene36488:intron | 25.0% |
| ! | AAGAGTAGTAAAATATTGGT+GGG | + | chr4.1:18314686-18314705 | None:intergenic | 25.0% |
| ! | AATACAAAATACATGATTCG+TGG | + | chr4.1:18312114-18312133 | None:intergenic | 25.0% |
| ! | AATATTAACAGGCATTAACT+TGG | + | chr4.1:18313150-18313169 | None:intergenic | 25.0% |
| ! | ACTAATTCGATCAATTGTTA+CGG | - | chr4.1:18312398-18312417 | MS.gene36488:intron | 25.0% |
| ! | ATATTAACAGGCATTAACTT+GGG | + | chr4.1:18313149-18313168 | None:intergenic | 25.0% |
| ! | ATTTACATCATAGATGTATC+TGG | - | chr4.1:18312659-18312678 | MS.gene36488:intron | 25.0% |
| ! | CAGTAATTTGAGAAATAACA+TGG | + | chr4.1:18313855-18313874 | None:intergenic | 25.0% |
| ! | CGTTATTTGTAATACAAGAA+AGG | + | chr4.1:18314659-18314678 | None:intergenic | 25.0% |
| ! | GAATGGTATTTATACAAGAT+GGG | + | chr4.1:18313947-18313966 | None:intergenic | 25.0% |
| ! | GAGGATATTAGTATTAATCT+TGG | - | chr4.1:18311861-18311880 | MS.gene36488:intron | 25.0% |
| ! | GAGTATTTATGATTGAAAGT+TGG | - | chr4.1:18314270-18314289 | MS.gene36488:intron | 25.0% |
| ! | GATAGAACACTTTGAATATT+TGG | - | chr4.1:18313385-18313404 | MS.gene36488:intron | 25.0% |
| ! | TAATGCCTGTTAATATTGTT+GGG | - | chr4.1:18313153-18313172 | MS.gene36488:intron | 25.0% |
| ! | TACTAAAATAGGTTGTTTGA+TGG | - | chr4.1:18313609-18313628 | MS.gene36488:CDS | 25.0% |
| ! | TATACATTAGGTTTGTATCT+TGG | - | chr4.1:18313709-18313728 | MS.gene36488:intron | 25.0% |
| ! | TCTGATATAAATTCTGATTG+TGG | + | chr4.1:18314165-18314184 | None:intergenic | 25.0% |
| ! | TGATTTATAGAAGTGAATCA+AGG | - | chr4.1:18314377-18314396 | MS.gene36488:CDS | 25.0% |
| ! | TTAATGCCTGTTAATATTGT+TGG | - | chr4.1:18313152-18313171 | MS.gene36488:intron | 25.0% |
| ! | TTTCTACTCAACATTTAAGA+TGG | + | chr4.1:18313765-18313784 | None:intergenic | 25.0% |
| !! | AATTGTGAATCATGTTTTAC+AGG | - | chr4.1:18314761-18314780 | MS.gene36488:CDS | 25.0% |
| !! | GTTCTATCTGATTTGATAAA+GGG | + | chr4.1:18313373-18313392 | None:intergenic | 25.0% |
| !! | TGTTCTATCTGATTTGATAA+AGG | + | chr4.1:18313374-18313393 | None:intergenic | 25.0% |
| !! | TTGATGATTATGGAACTAAT+TGG | - | chr4.1:18312814-18312833 | MS.gene36488:intron | 25.0% |
| !! | TTTGCATTAACTTTTGTAGA+TGG | + | chr4.1:18313529-18313548 | None:intergenic | 25.0% |
| !!! | CATGTTATTTCTCAAATTAC+TGG | - | chr4.1:18313853-18313872 | MS.gene36488:intron | 25.0% |
| !!! | CTATACATGATTTTAAGGTT+AGG | + | chr4.1:18314045-18314064 | None:intergenic | 25.0% |
| !!! | GATATTTTTACCAAAGAAGA+TGG | - | chr4.1:18311753-18311772 | MS.gene36488:intron | 25.0% |
| !!! | TATAATGATGAGAGTATTTG+AGG | - | chr4.1:18313501-18313520 | MS.gene36488:intron | 25.0% |
| !!! | TATATCACAGCGATTTTTTT+CGG | - | chr4.1:18314589-18314608 | MS.gene36488:CDS | 25.0% |
| !!! | TGTATTTTTGGTTTCATAGT+GGG | - | chr4.1:18312128-18312147 | MS.gene36488:intron | 25.0% |
| !!! | TTGTATTTTTGGTTTCATAG+TGG | - | chr4.1:18312127-18312146 | MS.gene36488:intron | 25.0% |
| AAAGTGAGTTAAATGTGAAG+TGG | + | chr4.1:18312244-18312263 | None:intergenic | 30.0% | |
| AATGTGAAGTGGTTTATGTT+TGG | + | chr4.1:18312233-18312252 | None:intergenic | 30.0% | |
| AATGTTGAGTAGAAAACAAC+TGG | - | chr4.1:18313770-18313789 | MS.gene36488:intron | 30.0% | |
| ATTTGCTTCTTTGTGAATCT+GGG | - | chr4.1:18311919-18311938 | MS.gene36488:intron | 30.0% | |
| CAAGAGTAGTAAAATATTGG+TGG | + | chr4.1:18314687-18314706 | None:intergenic | 30.0% | |
| CAAGCACATTCTTAATCTAT+AGG | - | chr4.1:18312307-18312326 | MS.gene36488:intron | 30.0% | |
| CCAGGTAATAAATTTGAAAG+AGG | - | chr4.1:18313794-18313813 | MS.gene36488:intron | 30.0% | |
| CCTCTTTCAAATTTATTACC+TGG | + | chr4.1:18313797-18313816 | None:intergenic | 30.0% | |
| GCTTCTTAGTAACATCTATA+AGG | - | chr4.1:18314508-18314527 | MS.gene36488:CDS | 30.0% | |
| GGAAAGAAACAAAATACTGT+GGG | - | chr4.1:18314477-18314496 | MS.gene36488:CDS | 30.0% | |
| GGAATAGTTTGATCTACAAT+TGG | - | chr4.1:18312423-18312442 | MS.gene36488:intron | 30.0% | |
| GGAATGGTATTTATACAAGA+TGG | + | chr4.1:18313948-18313967 | None:intergenic | 30.0% | |
| TCCATCAAAAAATTGCATGT+TGG | - | chr4.1:18313669-18313688 | MS.gene36488:intron | 30.0% | |
| TGAGAAATAACATGGAAAGA+AGG | + | chr4.1:18313847-18313866 | None:intergenic | 30.0% | |
| TGGAAAGAAACAAAATACTG+TGG | - | chr4.1:18314476-18314495 | MS.gene36488:CDS | 30.0% | |
| TGTAAAAATCTTTACGTGTC+TGG | + | chr4.1:18312171-18312190 | None:intergenic | 30.0% | |
| TGTTTGATATCACAATGGTT+TGG | - | chr4.1:18312048-18312067 | MS.gene36488:intron | 30.0% | |
| TTCAGAATACACTCAACAAT+GGG | + | chr4.1:18313969-18313988 | None:intergenic | 30.0% | |
| TTTCTTTCTTGCAATCTTTG+TGG | - | chr4.1:18312978-18312997 | MS.gene36488:intron | 30.0% | |
| ! | AACACTGAACACCATAATTT+TGG | + | chr4.1:18312079-18312098 | None:intergenic | 30.0% |
| ! | TGTGGCTATACATGATTTTA+AGG | + | chr4.1:18314050-18314069 | None:intergenic | 30.0% |
| ! | TTTGATGGACAATATGCTTA+GGG | + | chr4.1:18313658-18313677 | None:intergenic | 30.0% |
| ! | TTTTGTGTATAGCACTTACA+AGG | + | chr4.1:18312736-18312755 | None:intergenic | 30.0% |
| !! | AAGAAGGCATTCATTATTCT+TGG | + | chr4.1:18313831-18313850 | None:intergenic | 30.0% |
| !! | AGAAGGCATTCATTATTCTT+GGG | + | chr4.1:18313830-18313849 | None:intergenic | 30.0% |
| !! | CATTTTAGTCCTGAAATTGT+AGG | + | chr4.1:18312504-18312523 | None:intergenic | 30.0% |
| !! | TTTTGATGGACAATATGCTT+AGG | + | chr4.1:18313659-18313678 | None:intergenic | 30.0% |
| !!! | CAATGTTTTAGAAACCAAAC+CGG | - | chr4.1:18313186-18313205 | MS.gene36488:intron | 30.0% |
| !!! | CAATGTTTTGAAAACCAAAC+TGG | + | chr4.1:18313342-18313361 | None:intergenic | 30.0% |
| !!! | GTTTGGTTTTGCCAAAATTA+TGG | - | chr4.1:18312065-18312084 | MS.gene36488:intron | 30.0% |
| !!! | TCCAACATGCAATTTTTTGA+TGG | + | chr4.1:18313673-18313692 | None:intergenic | 30.0% |
| AACAGAGAAGCAAAAAGGAA+AGG | + | chr4.1:18313910-18313929 | None:intergenic | 35.0% | |
| AAGCATGGTGATTCATTCAT+AGG | - | chr4.1:18311498-18311517 | MS.gene36488:intron | 35.0% | |
| AATACACTCAACAATGGGAA+TGG | + | chr4.1:18313964-18313983 | None:intergenic | 35.0% | |
| AATGAAAGAGCTTTCACTGT+TGG | - | chr4.1:18311636-18311655 | MS.gene36488:intron | 35.0% | |
| ACAAAATACATGATTCGTGG+TGG | + | chr4.1:18312111-18312130 | None:intergenic | 35.0% | |
| ACATCAAATTGGAAATCTCC+GGG | - | chr4.1:18313209-18313228 | MS.gene36488:intron | 35.0% | |
| ATCTTTCTGCATCAATGTAC+AGG | - | chr4.1:18314713-18314732 | MS.gene36488:CDS | 35.0% | |
| ATTCGATCAATTGTTACGGA+TGG | - | chr4.1:18312402-18312421 | MS.gene36488:intron | 35.0% | |
| CAAAAACTCACCATCTTCTT+TGG | + | chr4.1:18311766-18311785 | None:intergenic | 35.0% | |
| CAAAATACATGATTCGTGGT+GGG | + | chr4.1:18312110-18312129 | None:intergenic | 35.0% | |
| CATGTTGGATTTAGTTGAGT+TGG | - | chr4.1:18313684-18313703 | MS.gene36488:intron | 35.0% | |
| CTAACCTGAGCAAATACAAA+TGG | + | chr4.1:18312939-18312958 | None:intergenic | 35.0% | |
| CTTCAGAATACACTCAACAA+TGG | + | chr4.1:18313970-18313989 | None:intergenic | 35.0% | |
| GAACACTTTGAATATTTGGG+AGG | - | chr4.1:18313389-18313408 | MS.gene36488:intron | 35.0% | |
| GACATCAAATTGGAAATCTC+CGG | - | chr4.1:18313208-18313227 | MS.gene36488:intron | 35.0% | |
| GAGATTTCCAATTTGATGTC+CGG | + | chr4.1:18313208-18313227 | None:intergenic | 35.0% | |
| GATAAAATTCCTAGGAAAGG+TGG | - | chr4.1:18312686-18312705 | MS.gene36488:intron | 35.0% | |
| GATGACCCAACAATATTAAC+AGG | + | chr4.1:18313161-18313180 | None:intergenic | 35.0% | |
| GCTATACACAAAACTATCTC+TGG | - | chr4.1:18312743-18312762 | MS.gene36488:intron | 35.0% | |
| GCTATGGTTCAGTTATATGA+AGG | + | chr4.1:18313287-18313306 | None:intergenic | 35.0% | |
| GGTCATTCACGTTGTATTAA+TGG | + | chr4.1:18314024-18314043 | None:intergenic | 35.0% | |
| GGTGATAAAATTCCTAGGAA+AGG | - | chr4.1:18312683-18312702 | MS.gene36488:intron | 35.0% | |
| GTCATGTAAAGAATGCTGTT+AGG | + | chr4.1:18314637-18314656 | None:intergenic | 35.0% | |
| GTGATATAAGGTGAGTGATT+TGG | + | chr4.1:18314577-18314596 | None:intergenic | 35.0% | |
| GTGTGTGTTTGATATCACAA+TGG | - | chr4.1:18312043-18312062 | MS.gene36488:intron | 35.0% | |
| TACATCATAGATGTATCTGG+TGG | - | chr4.1:18312662-18312681 | MS.gene36488:intron | 35.0% | |
| TATCTGACACCTACAATTTC+AGG | - | chr4.1:18312492-18312511 | MS.gene36488:intron | 35.0% | |
| TATTAATCTTGGTCCACTTG+AGG | - | chr4.1:18311872-18311891 | MS.gene36488:intron | 35.0% | |
| TTGATTGATAGATCGATTGG+TGG | - | chr4.1:18314200-18314219 | MS.gene36488:intron | 35.0% | |
| TTTGCTTCTTTGTGAATCTG+GGG | - | chr4.1:18311920-18311939 | MS.gene36488:intron | 35.0% | |
| ! | ACAAAGTGCTAACATCAAAG+CGG | + | chr4.1:18311691-18311710 | None:intergenic | 35.0% |
| ! | CAAAGAAGATGGTGAGTTTT+TGG | - | chr4.1:18311764-18311783 | MS.gene36488:intron | 35.0% |
| ! | CAGTTTTTGTGCAGATAACT+TGG | - | chr4.1:18312601-18312620 | MS.gene36488:intron | 35.0% |
| ! | GAATCATGTTTTACAGGCAT+GGG | - | chr4.1:18314767-18314786 | MS.gene36488:CDS | 35.0% |
| ! | GATTTGCTTCTTTGTGAATC+TGG | - | chr4.1:18311918-18311937 | MS.gene36488:intron | 35.0% |
| ! | TGAATCATGTTTTACAGGCA+TGG | - | chr4.1:18314766-18314785 | MS.gene36488:CDS | 35.0% |
| ! | TTGAAGTCTCTGTTGATAAG+AGG | + | chr4.1:18311618-18311637 | None:intergenic | 35.0% |
| !! | CGGTTTGGTTTCTAAAACAT+TGG | + | chr4.1:18313188-18313207 | None:intergenic | 35.0% |
| !! | GTATTTGCTCAGGTTAGTTT+AGG | - | chr4.1:18312942-18312961 | MS.gene36488:intron | 35.0% |
| !! | GTTGAGTTGGCATATACATT+AGG | - | chr4.1:18313697-18313716 | MS.gene36488:intron | 35.0% |
| !!! | GTTTTGAAAACCAAACTGGA+CGG | + | chr4.1:18313338-18313357 | None:intergenic | 35.0% |
| AACCAAACCGGACATCAAAT+TGG | - | chr4.1:18313198-18313217 | MS.gene36488:intron | 40.0% | |
| AGCTCAACAGAGAAGCAAAA+AGG | + | chr4.1:18313915-18313934 | None:intergenic | 40.0% | |
| AGGCATTCATTATTCTTGGG+AGG | + | chr4.1:18313827-18313846 | None:intergenic | 40.0% | |
| ATTCAGATTCTCTGCAGTCA+GGG | - | chr4.1:18313021-18313040 | MS.gene36488:intron | 40.0% | |
| CAAGCCATCTGATCTTTGAT+CGG | + | chr4.1:18313085-18313104 | None:intergenic | 40.0% | |
| CTTTGAATATTTGGGAGGAG+CGG | - | chr4.1:18313394-18313413 | MS.gene36488:intron | 40.0% | |
| CTTTGCTAATCGATGATTGC+TGG | - | chr4.1:18313443-18313462 | MS.gene36488:intron | 40.0% | |
| GTTCCTAAAATTGTCGCGTA+TGG | - | chr4.1:18312375-18312394 | MS.gene36488:intron | 40.0% | |
| TCAATTGACTGAACTGTGCA+CGG | + | chr4.1:18313314-18313333 | None:intergenic | 40.0% | |
| TGAATGAATCACCATGCTTG+TGG | + | chr4.1:18311497-18311516 | None:intergenic | 40.0% | |
| TTCCAATTTGATGTCCGGTT+TGG | + | chr4.1:18313203-18313222 | None:intergenic | 40.0% | |
| TTGCTTCTTTGTGAATCTGG+GGG | - | chr4.1:18311921-18311940 | MS.gene36488:intron | 40.0% | |
| TTGTCCGATCAAAGATCAGA+TGG | - | chr4.1:18313078-18313097 | MS.gene36488:intron | 40.0% | |
| TTTGAACCGAGATTGAAGTG+CGG | - | chr4.1:18313256-18313275 | MS.gene36488:intron | 40.0% | |
| ! | ACAGGCATTAACTTGGGAAT+TGG | + | chr4.1:18313143-18313162 | None:intergenic | 40.0% |
| ! | AGTAGAACTGGTTCAGAACA+TGG | - | chr4.1:18314456-18314475 | MS.gene36488:CDS | 40.0% |
| ! | AGTCCATACGCGACAATTTT+AGG | + | chr4.1:18312381-18312400 | None:intergenic | 40.0% |
| ! | ATTTTGCCTTGGTATCTGGT+TGG | - | chr4.1:18314082-18314101 | MS.gene36488:intron | 40.0% |
| ! | CTGGTGGTGATAAAATTCCT+AGG | - | chr4.1:18312678-18312697 | MS.gene36488:intron | 40.0% |
| !! | ATAAAGCGTTGCCTGAAGAA+AGG | - | chr4.1:18311793-18311812 | MS.gene36488:intron | 40.0% |
| !! | CAAAATGCTCAGTGGTTTTG+TGG | + | chr4.1:18314068-18314087 | None:intergenic | 40.0% |
| AAAGCAGTTGAACCATGACC+CGG | + | chr4.1:18313230-18313249 | None:intergenic | 45.0% | |
| AAAGTGTACCATAGCCACGA+CGG | - | chr4.1:18311531-18311550 | MS.gene36488:intron | 45.0% | |
| AAGAATCCGGGAGAGTAGAT+TGG | + | chr4.1:18311579-18311598 | None:intergenic | 45.0% | |
| AATATTTGGGAGGAGCGGTA+GGG | - | chr4.1:18313399-18313418 | MS.gene36488:intron | 45.0% | |
| AATTGGAAATCTCCGGGTCA+TGG | - | chr4.1:18313215-18313234 | MS.gene36488:intron | 45.0% | |
| ACAAGCAATTGGAGCTGACT+TGG | - | chr4.1:18312872-18312891 | MS.gene36488:intron | 45.0% | |
| ACAGCACGTATCCTTTCTTC+AGG | + | chr4.1:18311807-18311826 | None:intergenic | 45.0% | |
| ACGCTCTTAGGATGAGAGAT+GGG | - | chr4.1:18312910-18312929 | MS.gene36488:intron | 45.0% | |
| ACTGACCTTGCACAAGCAAT+TGG | - | chr4.1:18312861-18312880 | MS.gene36488:intron | 45.0% | |
| AGAGCTTTCACTGTTGGCAT+TGG | - | chr4.1:18311642-18311661 | MS.gene36488:intron | 45.0% | |
| AGATCAGCTTGTGTGATTCC+AGG | + | chr4.1:18312713-18312732 | None:intergenic | 45.0% | |
| AGATTCGAAAGCTCCTCAAG+TGG | + | chr4.1:18311888-18311907 | None:intergenic | 45.0% | |
| AGCTCTTCTGCTGAAGAATC+CGG | + | chr4.1:18311592-18311611 | None:intergenic | 45.0% | |
| CAAAATACTGTGGGCGAGTT+AGG | - | chr4.1:18314486-18314505 | MS.gene36488:CDS | 45.0% | |
| CGATCAAAGATCAGATGGCT+TGG | - | chr4.1:18313083-18313102 | MS.gene36488:intron | 45.0% | |
| GAAGCACAATGTTGGAGTAG+AGG | - | chr4.1:18314737-18314756 | MS.gene36488:CDS | 45.0% | |
| GAGTAGAAAACAACTGGTCC+AGG | - | chr4.1:18313776-18313795 | MS.gene36488:intron | 45.0% | |
| GATTCAGATTCTCTGCAGTC+AGG | - | chr4.1:18313020-18313039 | MS.gene36488:intron | 45.0% | |
| GCAATTCCAACCAGATACCA+AGG | + | chr4.1:18314091-18314110 | None:intergenic | 45.0% | |
| GCAGAGAATCTGAATCTTGC+TGG | + | chr4.1:18313016-18313035 | None:intergenic | 45.0% | |
| GTACAGGTGAAGCACAATGT+TGG | - | chr4.1:18314729-18314748 | MS.gene36488:CDS | 45.0% | |
| GTCAATTGAACCGTCCAGTT+TGG | - | chr4.1:18313325-18313344 | MS.gene36488:CDS | 45.0% | |
| GTTCAACCGCACTTCAATCT+CGG | + | chr4.1:18313265-18313284 | None:intergenic | 45.0% | |
| TACCAAGGCAAAATGCTCAG+TGG | + | chr4.1:18314076-18314095 | None:intergenic | 45.0% | |
| TGCTAATCGATGATTGCTGG+AGG | - | chr4.1:18313446-18313465 | MS.gene36488:intron | 45.0% | |
| ! | AACCACTGAGCATTTTGCCT+TGG | - | chr4.1:18314071-18314090 | MS.gene36488:intron | 45.0% |
| ! | AGGATACGTGCTGTTGAAAC+TGG | - | chr4.1:18311813-18311832 | MS.gene36488:intron | 45.0% |
| ! | ATACGTGCTGTTGAAACTGG+TGG | - | chr4.1:18311816-18311835 | MS.gene36488:intron | 45.0% |
| ! | CAAGCAATTGGAGCTGACTT+GGG | - | chr4.1:18312873-18312892 | MS.gene36488:intron | 45.0% |
| ! | GAGCATTTTGCCTTGGTATC+TGG | - | chr4.1:18314078-18314097 | MS.gene36488:intron | 45.0% |
| ! | TACGTGCTGTTGAAACTGGT+GGG | - | chr4.1:18311817-18311836 | MS.gene36488:intron | 45.0% |
| !! | GATTCATTCATAGGCGCTGA+TGG | - | chr4.1:18311507-18311526 | MS.gene36488:intron | 45.0% |
| AATCACCATGCTTGTGGTCG+TGG | + | chr4.1:18311491-18311510 | None:intergenic | 50.0% | |
| ACTTGGCTGCCAATTTCAGC+AGG | - | chr4.1:18312618-18312637 | MS.gene36488:intron | 50.0% | |
| AGCCAGTTCCCTGCTGAAAT+TGG | + | chr4.1:18312630-18312649 | None:intergenic | 50.0% | |
| ATTCCAGGACCACCTTTCCT+AGG | + | chr4.1:18312698-18312717 | None:intergenic | 50.0% | |
| ATTCCTAGGAAAGGTGGTCC+TGG | - | chr4.1:18312692-18312711 | MS.gene36488:intron | 50.0% | |
| CACGAACCAATCTACTCTCC+CGG | - | chr4.1:18311570-18311589 | MS.gene36488:intron | 50.0% | |
| CAGCTCCAATTGCTTGTGCA+AGG | + | chr4.1:18312869-18312888 | None:intergenic | 50.0% | |
| CGCTCTTAGGATGAGAGATG+GGG | - | chr4.1:18312911-18312930 | MS.gene36488:intron | 50.0% | |
| CTCTTAGGATGAGAGATGGG+GGG | - | chr4.1:18312913-18312932 | MS.gene36488:intron | 50.0% | |
| CTTCTTTGTGAATCTGGGGG+AGG | - | chr4.1:18311924-18311943 | MS.gene36488:intron | 50.0% | |
| CTTGGCTGCCAATTTCAGCA+GGG | - | chr4.1:18312619-18312638 | MS.gene36488:intron | 50.0% | |
| GAATATTTGGGAGGAGCGGT+AGG | - | chr4.1:18313398-18313417 | MS.gene36488:intron | 50.0% | |
| GAATTGGATCGCCTGAAGTC+GGG | + | chr4.1:18313127-18313146 | None:intergenic | 50.0% | |
| GACGCTCTTAGGATGAGAGA+TGG | - | chr4.1:18312909-18312928 | MS.gene36488:intron | 50.0% | |
| GCTCTTAGGATGAGAGATGG+GGG | - | chr4.1:18312912-18312931 | MS.gene36488:intron | 50.0% | |
| GCTCTTCTGCTGAAGAATCC+GGG | + | chr4.1:18311591-18311610 | None:intergenic | 50.0% | |
| GGAATTGGATCGCCTGAAGT+CGG | + | chr4.1:18313128-18313147 | None:intergenic | 50.0% | |
| GGGGCCATTTGTATTTGCTC+AGG | - | chr4.1:18312932-18312951 | MS.gene36488:intron | 50.0% | |
| TCCTCACGAATAGCAGCATG+AGG | + | chr4.1:18311846-18311865 | None:intergenic | 50.0% | |
| TCCTCATGCTGCTATTCGTG+AGG | - | chr4.1:18311842-18311861 | MS.gene36488:intron | 50.0% | |
| TGCCAATTTCAGCAGGGAAC+TGG | - | chr4.1:18312625-18312644 | MS.gene36488:intron | 50.0% | |
| ! | AGATGGCTTGGATCGCTTGA+TGG | - | chr4.1:18313095-18313114 | MS.gene36488:intron | 50.0% |
| ! | GCTTTCACTGTTGGCATTGG+TGG | - | chr4.1:18311645-18311664 | MS.gene36488:intron | 50.0% |
| !! | GGGAGAGTAGATTGGTTCGT+GGG | + | chr4.1:18311571-18311590 | None:intergenic | 50.0% |
| !! | TAGATTGGTTCGTGGGAGTG+TGG | + | chr4.1:18311564-18311583 | None:intergenic | 50.0% |
| AACTGTGCACGGCACTGCTA+TGG | + | chr4.1:18313303-18313322 | None:intergenic | 55.0% | |
| AGGGCAGCTGCTTAGCTGTT+TGG | + | chr4.1:18313639-18313658 | None:intergenic | 55.0% | |
| AGTCACGTAGCCAGCACGTA+AGG | - | chr4.1:18313053-18313072 | MS.gene36488:intron | 55.0% | |
| GGCTTGGATCGCTTGATGGA+GGG | - | chr4.1:18313099-18313118 | MS.gene36488:intron | 55.0% | |
| TCAACGGCGTTTCTTCCCTG+TGG | + | chr4.1:18314799-18314818 | None:intergenic | 55.0% | |
| TCGGACAACTCCTTACGTGC+TGG | + | chr4.1:18313066-18313085 | None:intergenic | 55.0% | |
| ! | ATTGGTGGACCTGTCGGTAC+AGG | - | chr4.1:18311660-18311679 | MS.gene36488:intron | 55.0% |
| ! | TGACTTGGGTGTCATGCAGC+GGG | - | chr4.1:18312887-18312906 | MS.gene36488:intron | 55.0% |
| ! | TGGCTTGGATCGCTTGATGG+AGG | - | chr4.1:18313098-18313117 | MS.gene36488:intron | 55.0% |
| !! | CGGGAGAGTAGATTGGTTCG+TGG | + | chr4.1:18311572-18311591 | None:intergenic | 55.0% |
| !! | CTGACTTGGGTGTCATGCAG+CGG | - | chr4.1:18312886-18312905 | MS.gene36488:intron | 55.0% |
| !! | GTTGGCATTGGTGGACCTGT+CGG | - | chr4.1:18311654-18311673 | MS.gene36488:intron | 55.0% |
| AGGCATGGGAAGCAGCCACA+GGG | - | chr4.1:18314781-18314800 | MS.gene36488:CDS | 60.0% | |
| AGTGTGGTGCAAGACCGTCG+TGG | + | chr4.1:18311548-18311567 | None:intergenic | 60.0% | |
| CACGACCACGACCACAAGCA+TGG | - | chr4.1:18311483-18311502 | MS.gene36488:CDS | 60.0% | |
| CATGCTTGTGGTCGTGGTCG+TGG | + | chr4.1:18311485-18311504 | None:intergenic | 60.0% | |
| GTGCAAGACCGTCGTGGCTA+TGG | + | chr4.1:18311542-18311561 | None:intergenic | 60.0% | |
| TCATGCAGCGGGACGCTCTT+AGG | - | chr4.1:18312898-18312917 | MS.gene36488:intron | 60.0% | |
| !! | GATGGAGGGTACCCGACTTC+AGG | - | chr4.1:18313113-18313132 | MS.gene36488:intron | 60.0% |
| !! | GCGGTTTTGCCTGTACCGAC+AGG | + | chr4.1:18311672-18311691 | None:intergenic | 60.0% |
| CAGGCATGGGAAGCAGCCAC+AGG | - | chr4.1:18314780-18314799 | MS.gene36488:CDS | 65.0% | |
| TGTGGTCGTGGTCGTGGTCG+TGG | + | chr4.1:18311479-18311498 | None:intergenic | 65.0% | |
| CGTGGTCGTGGTCGTGGTCG+TGG | + | chr4.1:18311473-18311492 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18311426 | 18314818 | 18311426 | ID=MS.gene36488 |
| chr4.1 | mRNA | 18311426 | 18314818 | 18311426 | ID=MS.gene36488.t1;Parent=MS.gene36488 |
| chr4.1 | exon | 18314299 | 18314818 | 18314299 | ID=MS.gene36488.t1.exon1;Parent=MS.gene36488.t1 |
| chr4.1 | CDS | 18314299 | 18314818 | 18314299 | ID=cds.MS.gene36488.t1;Parent=MS.gene36488.t1 |
| chr4.1 | exon | 18313508 | 18313629 | 18313508 | ID=MS.gene36488.t1.exon2;Parent=MS.gene36488.t1 |
| chr4.1 | CDS | 18313508 | 18313629 | 18313508 | ID=cds.MS.gene36488.t1;Parent=MS.gene36488.t1 |
| chr4.1 | exon | 18313291 | 18313395 | 18313291 | ID=MS.gene36488.t1.exon3;Parent=MS.gene36488.t1 |
| chr4.1 | CDS | 18313291 | 18313395 | 18313291 | ID=cds.MS.gene36488.t1;Parent=MS.gene36488.t1 |
| chr4.1 | exon | 18311426 | 18311509 | 18311426 | ID=MS.gene36488.t1.exon4;Parent=MS.gene36488.t1 |
| chr4.1 | CDS | 18311426 | 18311509 | 18311426 | ID=cds.MS.gene36488.t1;Parent=MS.gene36488.t1 |
| Gene Sequence |
| Protein sequence |
