AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060193


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060193.t1 MTR_2g076340 98.295 352 6 0 12 363 56 407 0.0 715
MS.gene060193.t1 MTR_3g072330 55.331 347 154 1 6 351 43 389 2.23e-138 399
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060193.t1 AT3G14930 80.980 347 66 0 12 358 60 406 0.0 598
MS.gene060193.t1 AT3G14930 80.980 347 66 0 12 358 60 406 0.0 598
MS.gene060193.t1 AT3G14930 81.155 329 62 0 30 358 1 329 0.0 567
MS.gene060193.t1 AT2G40490 53.801 342 157 1 11 351 53 394 4.03e-135 391

Find 100 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTGTTCTTTATATAAA+TGG 0.110324 2.3:-20685140 MS.gene060193:CDS
GAACTTTCAGATTGTAAATT+TGG 0.179718 2.3:-20685186 MS.gene060193:intron
GACACTGGAGTTGATGTTAT+TGG 0.226105 2.3:-20685089 MS.gene060193:CDS
ACGCTCTGAGGAGGGATTAA+AGG 0.251035 2.3:-20686319 MS.gene060193:CDS
TAGTTTACCTCTTTGATATA+AGG 0.260471 2.3:+20685871 None:intergenic
TAAAGAACAAGTGGTGTATC+TGG 0.272940 2.3:+20685149 None:intergenic
ATACAGCACCACACATTCTA+AGG 0.323236 2.3:-20686029 MS.gene060193:CDS
ATTACTATCAGATCCTCTTT+TGG 0.323417 2.3:-20686622 MS.gene060193:intron
GAACACCATGCCCAAGATTA+AGG 0.327102 2.3:+20684121 None:intergenic
ACCTCTGAATTTCTTCTGTT+AGG 0.334578 2.3:+20684961 None:intergenic
TAGAAATTTCTTTGCAGCCT+TGG 0.361660 2.3:-20686458 MS.gene060193:CDS
CTTGGGCATGGTGTTCTTGT+TGG 0.374900 2.3:-20684114 MS.gene060193:CDS
ACTCGACTGGACAGTGGATA+TGG 0.377098 2.3:-20685066 MS.gene060193:CDS
TGTATGGCACATGCTCTTAA+TGG 0.381907 2.3:+20686047 None:intergenic
GCATACAAATATTTGATTCA+TGG 0.385365 2.3:-20685936 MS.gene060193:CDS
GTTCTTTATATAAATGGAAA+TGG 0.386673 2.3:-20685134 MS.gene060193:CDS
TTCAGGGTTGTGAGGTCTGC+AGG 0.389800 2.3:-20684159 MS.gene060193:intron
CATGCCGGAGGACGGCTAAC+AGG 0.394517 2.3:+20686579 None:intergenic
CCTCTGAATTTCTTCTGTTA+GGG 0.395997 2.3:+20684962 None:intergenic
AGACAACACATCCTTAATCT+TGG 0.400361 2.3:-20684132 MS.gene060193:CDS
GAGAAAATAATTACTCCATC+AGG 0.416476 2.3:+20686423 None:intergenic
CATACAAATATTTGATTCAT+GGG 0.420865 2.3:-20685935 MS.gene060193:CDS
CGTATCGGTGACTGTATAAC+AGG 0.424760 2.3:+20686339 None:intergenic
CTAAGCTTGTCAAAGTCAAT+CGG 0.426657 2.3:+20686288 None:intergenic
GAAGAAGAAGATTAGGTAGC+GGG 0.442728 2.3:-20685037 MS.gene060193:CDS
TCTTCTGTTAGGGCAGTAAG+AGG 0.448836 2.3:+20684972 None:intergenic
CTTACACCTCTACCTGCATT+CGG 0.449149 2.3:-20686393 MS.gene060193:CDS
AGAAGATTAGGTAGCGGGAT+TGG 0.454956 2.3:-20685032 MS.gene060193:CDS
AAATGTGCAACAGCTTCTTC+AGG 0.457455 2.3:+20684087 None:intergenic
TTACACCTCTACCTGCATTC+GGG 0.464392 2.3:-20686392 MS.gene060193:CDS
GACAACACATCCTTAATCTT+GGG 0.466437 2.3:-20684131 MS.gene060193:CDS
GACAACTGCCGCCTCATATG+TGG 0.470143 2.3:-20685909 MS.gene060193:CDS
TTAGAATGTGTGGTGCTGTA+TGG 0.470252 2.3:+20686031 None:intergenic
GACCAGAGTTCCCACATATG+AGG 0.473769 2.3:+20685898 None:intergenic
GCTGATGGAAGAAGAAGATT+AGG 0.476250 2.3:-20685044 MS.gene060193:CDS
TGTGGGAGCACCTTGGACAT+TGG 0.478006 2.3:-20686112 MS.gene060193:CDS
CTCGCAGCCTTAACCAAAAG+AGG 0.480396 2.3:+20686609 None:intergenic
GACATTGGCAACGTATATAG+TGG 0.481356 2.3:-20686097 MS.gene060193:CDS
GGCAACGTATATAGTGGAAG+GGG 0.484531 2.3:-20686091 MS.gene060193:CDS
CAGTCGTCTCTGACCTCTCT+CGG 0.502489 2.3:+20686490 None:intergenic
AGAGGGGAGAATAAAGAAGC+AGG 0.503530 2.3:+20684990 None:intergenic
CGCCTCATATGTGGGAACTC+TGG 0.505272 2.3:-20685900 MS.gene060193:CDS
TCTGACCTCTCTCGGAAGGA+TGG 0.513347 2.3:+20686498 None:intergenic
GCATGGATGATGCGCCAAGC+AGG 0.516013 2.3:-20686561 MS.gene060193:CDS
CTGTTAGCCGTCCTCCGGCA+TGG 0.518001 2.3:-20686578 MS.gene060193:CDS
AGATCCTGTTAGCCGTCCTC+CGG 0.522619 2.3:-20686583 MS.gene060193:CDS
CACATTTCTTTGATGTCGCG+AGG 0.528865 2.3:-20684071 MS.gene060193:CDS
CAAATATTTGATTCATGGGG+TGG 0.529717 2.3:-20685931 MS.gene060193:CDS
TCTGCTTTCTCATTTGTCAA+AGG 0.532489 2.3:-20686004 MS.gene060193:CDS
TTGTCACTTTCAGGGTTGTG+AGG 0.534765 2.3:-20684167 MS.gene060193:intron
CTTCTGTTAGGGCAGTAAGA+GGG 0.535185 2.3:+20684973 None:intergenic
AAAGAACAAGTGGTGTATCT+GGG 0.541095 2.3:+20685150 None:intergenic
TAGCCATGTACCTTCCTGCT+TGG 0.546091 2.3:+20686547 None:intergenic
TTCTGTTAGGGCAGTAAGAG+GGG 0.546842 2.3:+20684974 None:intergenic
TAAGCTTGTCAAAGTCAATC+GGG 0.548224 2.3:+20686289 None:intergenic
AGATTAAGGATGTGTTGTCT+AGG 0.548882 2.3:+20684135 None:intergenic
GGAAGAAGAAGATTAGGTAG+CGG 0.558618 2.3:-20685038 MS.gene060193:CDS
TCGATCCCGAATGCAGGTAG+AGG 0.560715 2.3:+20686387 None:intergenic
CGAATGCAGGTAGAGGTGTA+AGG 0.561238 2.3:+20686394 None:intergenic
TCAAAGTCGATCCCGAATGC+AGG 0.561442 2.3:+20686381 None:intergenic
GCTTGGCGCATCATCCATGC+CGG 0.565380 2.3:+20686564 None:intergenic
CGTCTCTGACCTCTCTCGGA+AGG 0.569014 2.3:+20686494 None:intergenic
CTTTGACATAGAAGATGTGA+GGG 0.572515 2.3:-20686364 MS.gene060193:CDS
GCGCCAAGCAGGAAGGTACA+TGG 0.572903 2.3:-20686550 MS.gene060193:CDS
AACATCCATCCTTCCGAGAG+AGG 0.577108 2.3:-20686503 MS.gene060193:CDS
AATCCCTCCTCAGAGCGTAT+CGG 0.581435 2.3:+20686324 None:intergenic
GCATCATCCATGCCGGAGGA+CGG 0.583208 2.3:+20686571 None:intergenic
TTGGCAACGTATATAGTGGA+AGG 0.583350 2.3:-20686093 MS.gene060193:CDS
TTGATGTTATTGGACTCGAC+TGG 0.583463 2.3:-20685079 MS.gene060193:CDS
CTTTATATAAATGGAAATGG+TGG 0.584814 2.3:-20685131 MS.gene060193:CDS
AGCAGAGTCCTTAGAATGTG+TGG 0.585181 2.3:+20686021 None:intergenic
CCATTTATATAAAGAACAAG+TGG 0.585667 2.3:+20685140 None:intergenic
ACAACTGCCGCCTCATATGT+GGG 0.588080 2.3:-20685908 MS.gene060193:CDS
ACTTAAGATCCTGCGGCAAG+AGG 0.593099 2.3:-20686250 MS.gene060193:intron
GTCAAAGCCTTATATCAAAG+AGG 0.596608 2.3:-20685878 MS.gene060193:intron
CACATCCTTAATCTTGGGCA+TGG 0.600175 2.3:-20684126 MS.gene060193:CDS
ATATACGTTGCCAATGTCCA+AGG 0.600785 2.3:+20686102 None:intergenic
TGGCAACGTATATAGTGGAA+GGG 0.603156 2.3:-20686092 MS.gene060193:CDS
TGGACAGTGGATATGGCTGA+TGG 0.608369 2.3:-20685059 MS.gene060193:CDS
TCACCGATACGCTCTGAGGA+GGG 0.608994 2.3:-20686327 MS.gene060193:CDS
GTCACCGATACGCTCTGAGG+AGG 0.616864 2.3:-20686328 MS.gene060193:CDS
ACTTTGACATAGAAGATGTG+AGG 0.620333 2.3:-20686365 MS.gene060193:CDS
GATTGGTGTGCAAGGAAACG+TGG 0.621871 2.3:-20685015 MS.gene060193:CDS
TGTCTATCATACGCTCGAGA+AGG 0.625970 2.3:+20685108 None:intergenic
TGGCGCATCATCCATGCCGG+AGG 0.630576 2.3:+20686567 None:intergenic
TCAGGCCTAAAAGCTTTCCA+AGG 0.632316 2.3:+20686441 None:intergenic
CTCGAGCGTATGATAGACAC+TGG 0.632830 2.3:-20685104 MS.gene060193:CDS
AGTGAGCCCCAGATTCCACT+TGG 0.635817 2.3:+20685959 None:intergenic
GGTAGCGGGATTGGTGTGCA+AGG 0.635971 2.3:-20685023 MS.gene060193:CDS
GAGGGGAGAATAAAGAAGCA+GGG 0.636691 2.3:+20684991 None:intergenic
GGATGATGCGCCAAGCAGGA+AGG 0.641154 2.3:-20686557 MS.gene060193:CDS
TCCCACAAAACCTAAAACAG+CGG 0.645378 2.3:+20686128 None:intergenic
ATACAAATATTTGATTCATG+GGG 0.650037 2.3:-20685934 MS.gene060193:CDS
CCCTAACAGAAGAAATTCAG+AGG 0.651466 2.3:-20684962 MS.gene060193:intron
CAGAGTTCCCACATATGAGG+CGG 0.665889 2.3:+20685901 None:intergenic
GAGAATCACTTAAGATCCTG+CGG 0.672224 2.3:-20686257 MS.gene060193:CDS
TATTGGACTCGACTGGACAG+TGG 0.685653 2.3:-20685072 MS.gene060193:CDS
ACAGTCACCGATACGCTCTG+AGG 0.696424 2.3:-20686331 MS.gene060193:CDS
GCAACGTATATAGTGGAAGG+GGG 0.725564 2.3:-20686090 MS.gene060193:CDS
TTTGACATAGAAGATGTGAG+GGG 0.768540 2.3:-20686363 MS.gene060193:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAAATAGAAAATTCT+AGG - chr2.3:20685573-20685592 MS.gene060193:intron 10.0%
!! CATATTGTTTATATTTCATT+GGG - chr2.3:20685516-20685535 MS.gene060193:intron 15.0%
!! TATCATTGAAAATAATGTTA+CGG - chr2.3:20684073-20684092 MS.gene060193:CDS 15.0%
!! TCATATTGTTTATATTTCAT+TGG - chr2.3:20685515-20685534 MS.gene060193:intron 15.0%
!! TTAGTTTCAATATTATGAAT+TGG - chr2.3:20686451-20686470 MS.gene060193:CDS 15.0%
!! ATACAAATATTTGATTCATG+GGG - chr2.3:20684902-20684921 MS.gene060193:intron 20.0%
!! CATACAAATATTTGATTCAT+GGG - chr2.3:20684901-20684920 MS.gene060193:intron 20.0%
!! GTAATATTAGAAATGAGAAA+AGG + chr2.3:20685623-20685642 None:intergenic 20.0%
!! GTTCTTTATATAAATGGAAA+TGG - chr2.3:20685702-20685721 MS.gene060193:intron 20.0%
!!! AAACCTAAAACAATTTTATC+AGG + chr2.3:20685016-20685035 None:intergenic 20.0%
!!! AATTTCTTTTGTTGAAGAAA+GGG - chr2.3:20685069-20685088 MS.gene060193:CDS 20.0%
!!! ATACCTGATAAAATTGTTTT+AGG - chr2.3:20685010-20685029 MS.gene060193:CDS 20.0%
! AAAAAAACGATAAGTAGTGA+GGG + chr2.3:20684673-20684692 None:intergenic 25.0%
! AGAAATGAAAGGATAATGAA+GGG + chr2.3:20684109-20684128 None:intergenic 25.0%
! AGTGATAGAAATGTTTCTTA+AGG - chr2.3:20686404-20686423 MS.gene060193:CDS 25.0%
! ATATCAAAGAGGTAAACTAA+AGG - chr2.3:20684969-20684988 MS.gene060193:CDS 25.0%
! CCACTTGTTCTTTATATAAA+TGG - chr2.3:20685696-20685715 MS.gene060193:intron 25.0%
! CCATTTATATAAAGAACAAG+TGG + chr2.3:20685699-20685718 None:intergenic 25.0%
! CTTTATATAAATGGAAATGG+TGG - chr2.3:20685705-20685724 MS.gene060193:intron 25.0%
! CTTTCTTCAACAAAAGAAAT+TGG + chr2.3:20685070-20685089 None:intergenic 25.0%
! GAACTTTCAGATTGTAAATT+TGG - chr2.3:20685650-20685669 MS.gene060193:intron 25.0%
! GCATACAAATATTTGATTCA+TGG - chr2.3:20684900-20684919 MS.gene060193:intron 25.0%
! TAAAAAAACGATAAGTAGTG+AGG + chr2.3:20684674-20684693 None:intergenic 25.0%
! TAAACAAAAAAGATGCAGAA+AGG + chr2.3:20686286-20686305 None:intergenic 25.0%
! TAGTTTACCTCTTTGATATA+AGG + chr2.3:20684968-20684987 None:intergenic 25.0%
! TTATCAGGTATGAAAGAAAT+GGG + chr2.3:20685001-20685020 None:intergenic 25.0%
! TTTATCAGGTATGAAAGAAA+TGG + chr2.3:20685002-20685021 None:intergenic 25.0%
!! CAATTTCTTTTGTTGAAGAA+AGG - chr2.3:20685068-20685087 MS.gene060193:CDS 25.0%
!! TTGTAAATTTTTGCTGCAAA+TGG - chr2.3:20685382-20685401 MS.gene060193:intron 25.0%
!!! TACTTATCGTTTTTTTAGGT+TGG - chr2.3:20684677-20684696 MS.gene060193:intron 25.0%
!!! TCACTACTTATCGTTTTTTT+AGG - chr2.3:20684673-20684692 MS.gene060193:intron 25.0%
AACATCAGTTTCTCATTATG+TGG + chr2.3:20686216-20686235 None:intergenic 30.0%
AGTACAATGTGTTCAAATAG+TGG + chr2.3:20686063-20686082 None:intergenic 30.0%
AGTCAGTTAAGCAAATACTA+GGG + chr2.3:20686344-20686363 None:intergenic 30.0%
ATGAGCTTACATAATAGTCA+AGG + chr2.3:20685429-20685448 None:intergenic 30.0%
ATGTTGTCAATTGCATATAG+TGG + chr2.3:20686154-20686173 None:intergenic 30.0%
CAGAAATGAAAGGATAATGA+AGG + chr2.3:20684110-20684129 None:intergenic 30.0%
CTCATTGTGATGAATAAGAT+TGG - chr2.3:20686591-20686610 MS.gene060193:CDS 30.0%
GAAATGAGAAAAGGAGAAAT+TGG + chr2.3:20685614-20685633 None:intergenic 30.0%
GACACGAATGATAAAGTTAA+TGG + chr2.3:20685915-20685934 None:intergenic 30.0%
GAGAAAATAATTACTCCATC+AGG + chr2.3:20684416-20684435 None:intergenic 30.0%
GTTATTGCCATATATGTTCT+AGG - chr2.3:20685946-20685965 MS.gene060193:CDS 30.0%
TATCAGGTATGAAAGAAATG+GGG + chr2.3:20685000-20685019 None:intergenic 30.0%
! AGATTACATTGTTTTCCAAG+TGG - chr2.3:20684862-20684881 MS.gene060193:intron 30.0%
! ATTACTATCAGATCCTCTTT+TGG - chr2.3:20684214-20684233 MS.gene060193:intron 30.0%
!! ATGATTACTTGTCACTTTCA+GGG - chr2.3:20686661-20686680 MS.gene060193:intron 30.0%
!! TATGATTACTTGTCACTTTC+AGG - chr2.3:20686660-20686679 MS.gene060193:intron 30.0%
!!! TTATCGTTTTTTTAGGTTGG+TGG - chr2.3:20684680-20684699 MS.gene060193:intron 30.0%
!!! TTTGACAAGCTTAGTTTTGT+AGG - chr2.3:20684557-20684576 MS.gene060193:intron 30.0%
AAAATTCGGTTGCAACATGT+CGG - chr2.3:20684610-20684629 MS.gene060193:intron 35.0%
AAAGAACAAGTGGTGTATCT+GGG + chr2.3:20685689-20685708 None:intergenic 35.0%
AACAGAAGAAATTCAGAGGT+TGG - chr2.3:20685878-20685897 MS.gene060193:intron 35.0%
AACTGAAATTAGTGACACGA+AGG - chr2.3:20686368-20686387 MS.gene060193:CDS 35.0%
ACCTCTGAATTTCTTCTGTT+AGG + chr2.3:20685878-20685897 None:intergenic 35.0%
ACTGAAATTAGTGACACGAA+GGG - chr2.3:20686369-20686388 MS.gene060193:CDS 35.0%
ACTTTGACATAGAAGATGTG+AGG - chr2.3:20684471-20684490 MS.gene060193:intron 35.0%
AGACAACACATCCTTAATCT+TGG - chr2.3:20686704-20686723 MS.gene060193:intron 35.0%
AGATTAAGGATGTGTTGTCT+AGG + chr2.3:20686704-20686723 None:intergenic 35.0%
AGTCTCTCCTAGAACATATA+TGG + chr2.3:20685956-20685975 None:intergenic 35.0%
CAAATATTTGATTCATGGGG+TGG - chr2.3:20684905-20684924 MS.gene060193:intron 35.0%
CACCATGTCATACAAAACTT+TGG + chr2.3:20686514-20686533 None:intergenic 35.0%
CAGTCAGTTAAGCAAATACT+AGG + chr2.3:20686345-20686364 None:intergenic 35.0%
CCTCTGAATTTCTTCTGTTA+GGG + chr2.3:20685877-20685896 None:intergenic 35.0%
CTAAATTAGCCCACCTAAAT+TGG + chr2.3:20685247-20685266 None:intergenic 35.0%
CTAAGCTTGTCAAAGTCAAT+CGG + chr2.3:20684551-20684570 None:intergenic 35.0%
CTCATTATGTGGAATCATCA+AGG + chr2.3:20686205-20686224 None:intergenic 35.0%
CTTTGACATAGAAGATGTGA+GGG - chr2.3:20684472-20684491 MS.gene060193:intron 35.0%
GACAACACATCCTTAATCTT+GGG - chr2.3:20686705-20686724 MS.gene060193:intron 35.0%
GCATATGAGACAGAAATGAA+AGG + chr2.3:20684120-20684139 None:intergenic 35.0%
GTATACGCTATAGCTGTATT+TGG + chr2.3:20686118-20686137 None:intergenic 35.0%
TAAAGAACAAGTGGTGTATC+TGG + chr2.3:20685690-20685709 None:intergenic 35.0%
TAAGCTTGTCAAAGTCAATC+GGG + chr2.3:20684550-20684569 None:intergenic 35.0%
TAGAAATTTCTTTGCAGCCT+TGG - chr2.3:20684378-20684397 MS.gene060193:intron 35.0%
TAGTATATACGTAACCCACT+TGG - chr2.3:20685146-20685165 MS.gene060193:CDS 35.0%
TATGATTCCTCTTGGTTAGT+TGG - chr2.3:20685312-20685331 MS.gene060193:intron 35.0%
TCAATTGCATATAGTGGCTA+TGG + chr2.3:20686148-20686167 None:intergenic 35.0%
TCTGCTTTCTCATTTGTCAA+AGG - chr2.3:20684832-20684851 MS.gene060193:intron 35.0%
TGGTTTAATCAGTCAGACTT+GGG - chr2.3:20686471-20686490 MS.gene060193:CDS 35.0%
TTGGTTTAATCAGTCAGACT+TGG - chr2.3:20686470-20686489 MS.gene060193:CDS 35.0%
TTTCTGAGCTCTGTATAGTT+AGG - chr2.3:20685105-20685124 MS.gene060193:CDS 35.0%
TTTGACATAGAAGATGTGAG+GGG - chr2.3:20684473-20684492 MS.gene060193:intron 35.0%
! ATACAAAACTTTGGCCTTTC+TGG + chr2.3:20686505-20686524 None:intergenic 35.0%
! ATTGTTTTCCAAGTGGAATC+TGG - chr2.3:20684869-20684888 MS.gene060193:intron 35.0%
! GTCAAAGCCTTATATCAAAG+AGG - chr2.3:20684958-20684977 MS.gene060193:intron 35.0%
! TTGTTTTCCAAGTGGAATCT+GGG - chr2.3:20684870-20684889 MS.gene060193:intron 35.0%
!! ATCAGATCCTCTTTTGGTTA+AGG - chr2.3:20684220-20684239 MS.gene060193:intron 35.0%
!! GGGTTGGTAAATAATTTGAC+TGG - chr2.3:20685345-20685364 MS.gene060193:intron 35.0%
!! TGTCGGCACTTTTTATATCA+TGG - chr2.3:20684627-20684646 MS.gene060193:intron 35.0%
AAATGTGCAACAGCTTCTTC+AGG + chr2.3:20686752-20686771 None:intergenic 40.0%
ATACAGCACCACACATTCTA+AGG - chr2.3:20684807-20684826 MS.gene060193:intron 40.0%
ATATACGTTGCCAATGTCCA+AGG + chr2.3:20684737-20684756 None:intergenic 40.0%
ATTCTCTCCAGTGCCAATTT+AGG - chr2.3:20685231-20685250 MS.gene060193:intron 40.0%
CAAGAGGAATCATAGAGACT+TGG + chr2.3:20685306-20685325 None:intergenic 40.0%
CAAGTCTCTATGATTCCTCT+TGG - chr2.3:20685304-20685323 MS.gene060193:intron 40.0%
CAGTTAAGCAAATACTAGGG+AGG + chr2.3:20686341-20686360 None:intergenic 40.0%
CCCTAACAGAAGAAATTCAG+AGG - chr2.3:20685874-20685893 MS.gene060193:intron 40.0%
GAAACTGATGTTTCATCACG+TGG - chr2.3:20686224-20686243 MS.gene060193:intron 40.0%
GAAGAAGAAGATTAGGTAGC+GGG - chr2.3:20685799-20685818 MS.gene060193:intron 40.0%
GACATTGGCAACGTATATAG+TGG - chr2.3:20684739-20684758 MS.gene060193:intron 40.0%
GAGAATCACTTAAGATCCTG+CGG - chr2.3:20684579-20684598 MS.gene060193:intron 40.0%
GAGTTGTCAATTGCAGATCA+TGG - chr2.3:20685985-20686004 MS.gene060193:CDS 40.0%
GCTGATGGAAGAAGAAGATT+AGG - chr2.3:20685792-20685811 MS.gene060193:intron 40.0%
GGAAGAAGAAGATTAGGTAG+CGG - chr2.3:20685798-20685817 MS.gene060193:intron 40.0%
GTGGTGATAAATGCATTACC+AGG - chr2.3:20686243-20686262 MS.gene060193:intron 40.0%
TATACGTAACCCACTTGGAT+TGG - chr2.3:20685151-20685170 MS.gene060193:CDS 40.0%
TCACAATGAGTGTTCGCATT+TGG + chr2.3:20686581-20686600 None:intergenic 40.0%
TCATTCGTGTCGTCATTCTA+TGG - chr2.3:20685924-20685943 MS.gene060193:CDS 40.0%
TCCCACAAAACCTAAAACAG+CGG + chr2.3:20684711-20684730 None:intergenic 40.0%
TCTGCAATTGACAACTCAAG+TGG + chr2.3:20685982-20686001 None:intergenic 40.0%
TGTATGGCACATGCTCTTAA+TGG + chr2.3:20684792-20684811 None:intergenic 40.0%
TTGATGTTATTGGACTCGAC+TGG - chr2.3:20685757-20685776 MS.gene060193:intron 40.0%
TTGCAGATCATGGAAAGTAG+CGG - chr2.3:20685995-20686014 MS.gene060193:CDS 40.0%
! ATTCCTCTTGGTTAGTTGGT+TGG - chr2.3:20685316-20685335 MS.gene060193:intron 40.0%
! TGGCAACGTATATAGTGGAA+GGG - chr2.3:20684744-20684763 MS.gene060193:intron 40.0%
! TGTTTTCCAAGTGGAATCTG+GGG - chr2.3:20684871-20684890 MS.gene060193:intron 40.0%
! TTGGCAACGTATATAGTGGA+AGG - chr2.3:20684743-20684762 MS.gene060193:intron 40.0%
!! GACACTGGAGTTGATGTTAT+TGG - chr2.3:20685747-20685766 MS.gene060193:intron 40.0%
!! GGCCAAAGTTTTGTATGACA+TGG - chr2.3:20686509-20686528 MS.gene060193:CDS 40.0%
!! TTAGAATGTGTGGTGCTGTA+TGG + chr2.3:20684808-20684827 None:intergenic 40.0%
AGAGGGGAGAATAAAGAAGC+AGG + chr2.3:20685849-20685868 None:intergenic 45.0%
AGCAGAGTCCTTAGAATGTG+TGG + chr2.3:20684818-20684837 None:intergenic 45.0%
ATATAGTGGCTATGGCGTAG+CGG + chr2.3:20686140-20686159 None:intergenic 45.0%
ATCATCAAGGAGAGTCGCTT+AGG + chr2.3:20686192-20686211 None:intergenic 45.0%
ATGCAGAAAGGACATTCGCT+AGG + chr2.3:20686274-20686293 None:intergenic 45.0%
CAACCAACCAACTAACCAAG+AGG + chr2.3:20685322-20685341 None:intergenic 45.0%
CACATCCTTAATCTTGGGCA+TGG - chr2.3:20686710-20686729 MS.gene060193:intron 45.0%
CACATTTCTTTGATGTCGCG+AGG - chr2.3:20686765-20686784 MS.gene060193:intron 45.0%
CTGCGGCAAGAGGTAAAATT+CGG - chr2.3:20684596-20684615 MS.gene060193:intron 45.0%
CTTACACCTCTACCTGCATT+CGG - chr2.3:20684443-20684462 MS.gene060193:intron 45.0%
CTTCTGTTAGGGCAGTAAGA+GGG + chr2.3:20685866-20685885 None:intergenic 45.0%
GAACACCATGCCCAAGATTA+AGG + chr2.3:20686718-20686737 None:intergenic 45.0%
GAGGGGAGAATAAAGAAGCA+GGG + chr2.3:20685848-20685867 None:intergenic 45.0%
GATACACGCATCTTAGACAC+TGG + chr2.3:20686313-20686332 None:intergenic 45.0%
TAAGCGTGCTTGTGACTTCA+AGG - chr2.3:20685456-20685475 MS.gene060193:intron 45.0%
TCAGGCCTAAAAGCTTTCCA+AGG + chr2.3:20684398-20684417 None:intergenic 45.0%
TCTCCAGTGCCAATTTAGGT+GGG - chr2.3:20685235-20685254 MS.gene060193:intron 45.0%
TCTTCTGTTAGGGCAGTAAG+AGG + chr2.3:20685867-20685886 None:intergenic 45.0%
TGTCTATCATACGCTCGAGA+AGG + chr2.3:20685731-20685750 None:intergenic 45.0%
TTACACCTCTACCTGCATTC+GGG - chr2.3:20684444-20684463 MS.gene060193:intron 45.0%
TTCTGTTAGGGCAGTAAGAG+GGG + chr2.3:20685865-20685884 None:intergenic 45.0%
! AACTTTGGCCTTTCTGGCAA+AGG + chr2.3:20686499-20686518 None:intergenic 45.0%
! CGTATCGGTGACTGTATAAC+AGG + chr2.3:20684500-20684519 None:intergenic 45.0%
! CTCTTGGTTAGTTGGTTGGT+TGG - chr2.3:20685320-20685339 MS.gene060193:intron 45.0%
! GCAACGTATATAGTGGAAGG+GGG - chr2.3:20684746-20684765 MS.gene060193:intron 45.0%
! GGCAACGTATATAGTGGAAG+GGG - chr2.3:20684745-20684764 MS.gene060193:intron 45.0%
! TGCAGCCTTGGAAAGCTTTT+AGG - chr2.3:20684390-20684409 MS.gene060193:intron 45.0%
! TGGAAAGCTTTTAGGCCTGA+TGG - chr2.3:20684398-20684417 MS.gene060193:intron 45.0%
!! AGAAGATTAGGTAGCGGGAT+TGG - chr2.3:20685804-20685823 MS.gene060193:intron 45.0%
!! TTGTCACTTTCAGGGTTGTG+AGG - chr2.3:20686669-20686688 MS.gene060193:intron 45.0%
!!! GCCGCTGTTTTAGGTTTTGT+GGG - chr2.3:20684707-20684726 MS.gene060193:intron 45.0%
!!! TGCCGCTGTTTTAGGTTTTG+TGG - chr2.3:20684706-20684725 MS.gene060193:intron 45.0%
AACATCCATCCTTCCGAGAG+AGG - chr2.3:20684333-20684352 MS.gene060193:intron 50.0%
AATCCCTCCTCAGAGCGTAT+CGG + chr2.3:20684515-20684534 None:intergenic 50.0%
ACAACTGCCGCCTCATATGT+GGG - chr2.3:20684928-20684947 MS.gene060193:intron 50.0%
ACTCGACTGGACAGTGGATA+TGG - chr2.3:20685770-20685789 MS.gene060193:intron 50.0%
ACTTAAGATCCTGCGGCAAG+AGG - chr2.3:20684586-20684605 MS.gene060193:intron 50.0%
ATGTGACCCTGCTGAGATAC+AGG - chr2.3:20684142-20684161 MS.gene060193:CDS 50.0%
CAGAGTTCCCACATATGAGG+CGG + chr2.3:20684938-20684957 None:intergenic 50.0%
CTCGAGCGTATGATAGACAC+TGG - chr2.3:20685732-20685751 MS.gene060193:intron 50.0%
CTCGCAGCCTTAACCAAAAG+AGG + chr2.3:20684230-20684249 None:intergenic 50.0%
CTCTCCAGTGCCAATTTAGG+TGG - chr2.3:20685234-20685253 MS.gene060193:intron 50.0%
CTCTTGCCTGTATCTCAGCA+GGG + chr2.3:20684151-20684170 None:intergenic 50.0%
CTTGGGCATGGTGTTCTTGT+TGG - chr2.3:20686722-20686741 MS.gene060193:intron 50.0%
GAATCGAACATGAGACCACG+AGG + chr2.3:20685215-20685234 None:intergenic 50.0%
GACATTCGCTAGGAAGATCC+TGG + chr2.3:20686264-20686283 None:intergenic 50.0%
GACCAGAGTTCCCACATATG+AGG + chr2.3:20684941-20684960 None:intergenic 50.0%
GAGTCGCTTAGGAACTACTC+TGG + chr2.3:20686181-20686200 None:intergenic 50.0%
GATTGGTGTGCAAGGAAACG+TGG - chr2.3:20685821-20685840 MS.gene060193:intron 50.0%
TAGCCATGTACCTTCCTGCT+TGG + chr2.3:20684292-20684311 None:intergenic 50.0%
TAGCCCACCTAAATTGGCAC+TGG + chr2.3:20685241-20685260 None:intergenic 50.0%
TATTGGACTCGACTGGACAG+TGG - chr2.3:20685764-20685783 MS.gene060193:intron 50.0%
TCAAAGTCGATCCCGAATGC+AGG + chr2.3:20684458-20684477 None:intergenic 50.0%
TCTCTTGCCTGTATCTCAGC+AGG + chr2.3:20684152-20684171 None:intergenic 50.0%
TGGACAGTGGATATGGCTGA+TGG - chr2.3:20685777-20685796 MS.gene060193:intron 50.0%
! CGAATGCAGGTAGAGGTGTA+AGG + chr2.3:20684445-20684464 None:intergenic 50.0%
! CGAATTTTACCTCTTGCCGC+AGG + chr2.3:20684598-20684617 None:intergenic 50.0%
! GGTTAGTTGGTTGGTTGGCT+GGG - chr2.3:20685325-20685344 MS.gene060193:intron 50.0%
! TGGTTAGTTGGTTGGTTGGC+TGG - chr2.3:20685324-20685343 MS.gene060193:intron 50.0%
!! ACGCTCTGAGGAGGGATTAA+AGG - chr2.3:20684517-20684536 MS.gene060193:intron 50.0%
!! CTTTTGGTTAAGGCTGCGAG+AGG - chr2.3:20684230-20684249 MS.gene060193:intron 50.0%
!! GTGGTATTGACTTGGGACCT+GGG - chr2.3:20685178-20685197 MS.gene060193:CDS 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG - chr2.3:20685171-20685190 MS.gene060193:CDS 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG - chr2.3:20685170-20685189 MS.gene060193:CDS 50.0%
!!! TAGGTTTTGTGGGAGCACCT+TGG - chr2.3:20684717-20684736 MS.gene060193:intron 50.0%
ACAGTCACCGATACGCTCTG+AGG - chr2.3:20684505-20684524 MS.gene060193:intron 55.0%
ACCACCAGGCCAATCCAAGT+GGG + chr2.3:20685163-20685182 None:intergenic 55.0%
AGATCCTGTTAGCCGTCCTC+CGG - chr2.3:20684253-20684272 MS.gene060193:intron 55.0%
AGTGAGCCCCAGATTCCACT+TGG + chr2.3:20684880-20684899 None:intergenic 55.0%
CAGTCGTCTCTGACCTCTCT+CGG + chr2.3:20684349-20684368 None:intergenic 55.0%
CGCCTCATATGTGGGAACTC+TGG - chr2.3:20684936-20684955 MS.gene060193:intron 55.0%
GACAACTGCCGCCTCATATG+TGG - chr2.3:20684927-20684946 MS.gene060193:intron 55.0%
GGTCCCAAGTCAATACCACC+AGG + chr2.3:20685177-20685196 None:intergenic 55.0%
TACCACCAGGCCAATCCAAG+TGG + chr2.3:20685164-20685183 None:intergenic 55.0%
TCGAACATGAGACCACGAGG+AGG + chr2.3:20685212-20685231 None:intergenic 55.0%
TCGATCCCGAATGCAGGTAG+AGG + chr2.3:20684452-20684471 None:intergenic 55.0%
TCTGACCTCTCTCGGAAGGA+TGG + chr2.3:20684341-20684360 None:intergenic 55.0%
TTCAGGGTTGTGAGGTCTGC+AGG - chr2.3:20686677-20686696 MS.gene060193:intron 55.0%
! AGTTGGTTGGTTGGCTGGGT+TGG - chr2.3:20685329-20685348 MS.gene060193:intron 55.0%
!! GGTGGTATTGACTTGGGACC+TGG - chr2.3:20685177-20685196 MS.gene060193:CDS 55.0%
!! GGTGGTGATGCCGCTGTTTT+AGG - chr2.3:20684698-20684717 MS.gene060193:intron 55.0%
!! GTAACCCACTTGGATTGGCC+TGG - chr2.3:20685156-20685175 MS.gene060193:CDS 55.0%
!! TCACCGATACGCTCTGAGGA+GGG - chr2.3:20684509-20684528 MS.gene060193:intron 55.0%
!! TGTGGGAGCACCTTGGACAT+TGG - chr2.3:20684724-20684743 MS.gene060193:intron 55.0%
CGTCTCTGACCTCTCTCGGA+AGG + chr2.3:20684345-20684364 None:intergenic 60.0%
CTTGGGCGCCTTTGCCAGAA+AGG - chr2.3:20686488-20686507 MS.gene060193:CDS 60.0%
GCATCATCCATGCCGGAGGA+CGG + chr2.3:20684268-20684287 None:intergenic 60.0%
GCATGGATGATGCGCCAAGC+AGG - chr2.3:20684275-20684294 MS.gene060193:intron 60.0%
GCTTGGCGCATCATCCATGC+CGG + chr2.3:20684275-20684294 None:intergenic 60.0%
GGATGATGCGCCAAGCAGGA+AGG - chr2.3:20684279-20684298 MS.gene060193:intron 60.0%
! GCGCCAAGCAGGAAGGTACA+TGG - chr2.3:20684286-20684305 MS.gene060193:intron 60.0%
!! ACCCACTTGGATTGGCCTGG+TGG - chr2.3:20685159-20685178 MS.gene060193:CDS 60.0%
!! GGTAGCGGGATTGGTGTGCA+AGG - chr2.3:20685813-20685832 MS.gene060193:intron 60.0%
!! GTCACCGATACGCTCTGAGG+AGG - chr2.3:20684508-20684527 MS.gene060193:intron 60.0%
CATGCCGGAGGACGGCTAAC+AGG + chr2.3:20684260-20684279 None:intergenic 65.0%
CTGTTAGCCGTCCTCCGGCA+TGG - chr2.3:20684258-20684277 MS.gene060193:intron 65.0%
TGGCGCATCATCCATGCCGG+AGG + chr2.3:20684272-20684291 None:intergenic 65.0%
! ACGAGGAGGAGCACACTCCC+AGG + chr2.3:20685198-20685217 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+TGG - chr2.3:20685197-20685216 MS.gene060193:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 20684020 20686838 20684020 ID=MS.gene060193
chr2.3 mRNA 20684020 20686838 20684020 ID=MS.gene060193.t1;Parent=MS.gene060193
chr2.3 exon 20686808 20686838 20686808 ID=MS.gene060193.t1.exon1;Parent=MS.gene060193.t1
chr2.3 CDS 20686808 20686838 20686808 ID=cds.MS.gene060193.t1;Parent=MS.gene060193.t1
chr2.3 exon 20686251 20686633 20686251 ID=MS.gene060193.t1.exon2;Parent=MS.gene060193.t1
chr2.3 CDS 20686251 20686633 20686251 ID=cds.MS.gene060193.t1;Parent=MS.gene060193.t1
chr2.3 exon 20685879 20686163 20685879 ID=MS.gene060193.t1.exon3;Parent=MS.gene060193.t1
chr2.3 CDS 20685879 20686163 20685879 ID=cds.MS.gene060193.t1;Parent=MS.gene060193.t1
chr2.3 exon 20684963 20685198 20684963 ID=MS.gene060193.t1.exon4;Parent=MS.gene060193.t1
chr2.3 CDS 20684963 20685198 20684963 ID=cds.MS.gene060193.t1;Parent=MS.gene060193.t1
chr2.3 exon 20684020 20684176 20684020 ID=MS.gene060193.t1.exon5;Parent=MS.gene060193.t1
chr2.3 CDS 20684020 20684176 20684020 ID=cds.MS.gene060193.t1;Parent=MS.gene060193.t1
Gene Sequence

>MS.gene060193

ATGTATTCGTGCATTTGCAACTTCTTCGAACGTGACTAATGTCGCATAAACAGTATCATTGAAAATAATGTTACGGACATTTCTCACCCTTCATTATCCTTTCATTTCTGTCTCATATGCAGATGTGACCCTGCTGAGATACAGGCAAGAGAAATTGACTTGAATTCATTGTGTTTTATTTTTTTTTCATTTTAATTACTATCAGATCCTCTTTTGGTTAAGGCTGCGAGAGGAGATCCTGTTAGCCGTCCTCCGGCATGGATGATGCGCCAAGCAGGAAGGTACATGGCTATTTACAGAAAGTTAGCTGAGAAACATCCATCCTTCCGAGAGAGGTCAGAGACGACTGATCTCATTGTAGAAATTTCTTTGCAGCCTTGGAAAGCTTTTAGGCCTGATGGAGTAATTATTTTCTCTGACATCCTTACACCTCTACCTGCATTCGGGATCGACTTTGACATAGAAGATGTGAGGGGACCTGTTATACAGTCACCGATACGCTCTGAGGAGGGATTAAAGGTTTTACACCCGATTGACTTTGACAAGCTTAGTTTTGTAGGAGAATCACTTAAGATCCTGCGGCAAGAGGTAAAATTCGGTTGCAACATGTCGGCACTTTTTATATCATGGCTATCTTTCTAAGCATGTTTCCCTCACTACTTATCGTTTTTTTAGGTTGGTGGTGATGCCGCTGTTTTAGGTTTTGTGGGAGCACCTTGGACATTGGCAACGTATATAGTGGAAGGGGGTACGACACGTACATATACAACCATTAAGAGCATGTGCCATACAGCACCACACATTCTAAGGACTCTGCTTTCTCATTTGTCAAAGGCGATAGCAGATTACATTGTTTTCCAAGTGGAATCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTGCCGCCTCATATGTGGGAACTCTGGTCAAAGCCTTATATCAAAGAGGTAAACTAAAGGAAAATCCCCATTTCTTTCATACCTGATAAAATTGTTTTAGGTTTTTAAAGTTTTCATTATCAAGTCTAATTATAACCAATTTCTTTTGTTGAAGAAAGGGAATAGCATGTAGCTTTCTGAGCTCTGTATAGTTAGGTTGATGTCAAATTAATTATAGTATATACGTAACCCACTTGGATTGGCCTGGTGGTATTGACTTGGGACCTGGGAGTGTGCTCCTCCTCGTGGTCTCATGTTCGATTCTCTCCAGTGCCAATTTAGGTGGGCTAATTTAGCTTCTTCAAAAAAAAAAAATTATAGTGTATACGTTTCCAAGTCTCTATGATTCCTCTTGGTTAGTTGGTTGGTTGGCTGGGTTGGTAAATAATTTGACTGGTAAAAGCTTGTAATTTGTAAATTTTTGCTGCAAATGGAAAATATTTGTTATGTGTAAGCCTTGACTATTATGTAAGCTCATTCGATATTAAGCGTGCTTGTGACTTCAAGGAATAAAATTTTAAATTAGAACTCAGAAGCTACATCTTCATATTGTTTATATTTCATTGGGATAATTATTGCTATTAGTATCTTGTTTAAAAAATTATAATAAATAGAAAATTCTAGGTTGACTTCTGTTGTGCCAATTTCTCCTTTTCTCATTTCTAATATTACACTTTCTGAACTTTCAGATTGTAAATTTGGTCAAGAAAAAGTGCCCAGATACACCACTTGTTCTTTATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGATAGACACTGGAGTTGATGTTATTGGACTCGACTGGACAGTGGATATGGCTGATGGAAGAAGAAGATTAGGTAGCGGGATTGGTGTGCAAGGAAACGTGGACCCTGCTTCTTTATTCTCCCCTCTTACTGCCCTAACAGAAGAAATTCAGAGGTTGGTGACATAACTGCCATTAACTTTATCATTCGTGTCGTCATTCTATGGTTATTGCCATATATGTTCTAGGAGAGACTACACCACTTGAGTTGTCAATTGCAGATCATGGAAAGTAGCGGTTTGTTCAGATATCACTATGCTATAGCGCTGTTGTACTATAGCCACTATTTGAACACATTGTACTAAATAACAAATCAGAAATCAATAATATTTTGTCCAAATACAGCTATAGCGTATACCGCTACGCCATAGCCACTATATGCAATTGACAACATTGCACCAGAGTAGTTCCTAAGCGACTCTCCTTGATGATTCCACATAATGAGAAACTGATGTTTCATCACGTGGTGATAAATGCATTACCAGGATCTTCCTAGCGAATGTCCTTTCTGCATCTTTTTTGTTTATGATCCAGTGTCTAAGATGCGTGTATCTTAAACCTCCCTAGTATTTGCTTAACTGACTGAAGAACTGAAATTAGTGACACGAAGGGCATCGAACAAATAGTGATAGAAATGTTTCTTAAGGAATTGTTACTATGTTAGTAATCTTTTAGTTTCAATATTATGAATTGGTTTAATCAGTCAGACTTGGGCGCCTTTGCCAGAAAGGCCAAAGTTTTGTATGACATGGTGACAAGCTGATATCACTTACTGTTATCATGTTACTAGTTTTTTGTCCAAATGCGAACACTCATTGTGATGAATAAGATTGGATATATGAATATTACTGATGAATTATCGATTATCTTGATTACTTAATATGATTACTTGTCACTTTCAGGGTTGTGAGGTCTGCAGGACCTAGACAACACATCCTTAATCTTGGGCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGATGTCGCGAGGAGCTTGAAGTTTGACACTCTCTCTCAAAATAACACTGCAAATGTAGCTTAA

Protein sequence

>MS.gene060193.t1

MYSCICNFFEHPLLVKAARGDPVSRPPAWMMRQAGRYMAIYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIDFDIEDVRGPVIQSPIRSEEGLKVLHPIDFDKLSFVGESLKILRQEVGGDAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPHILRTLLSHLSKAIADYIVFQVESGAHCIQIFDSWGGQLPPHMWELWSKPYIKEIVNLVKKKCPDTPLVLYINGNGGLLERMIDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLTALTEEIQRVVRSAGPRQHILNLGHGVLVGTPEEAVAHFFDVARSLKFDTLSQNNTANVA