Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36512.t1 | XP_013457372.1 | 97.1 | 137 | 4 | 0 | 12 | 148 | 1 | 137 | 4.10E-64 | 254.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36512.t1 | O64764 | 47.2 | 144 | 72 | 2 | 9 | 148 | 19 | 162 | 9.9e-27 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36512.t1 | I3S2W5 | 97.1 | 137 | 4 | 0 | 12 | 148 | 1 | 137 | 2.9e-64 | 254.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053272 | MS.gene36512 | 0.816288 | 5.97E-52 | -1.69E-46 |
| MS.gene059338 | MS.gene36512 | 0.800486 | 1.41E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36512.t1 | MTR_4g094690 | 97.080 | 137 | 4 | 0 | 12 | 148 | 1 | 137 | 7.26e-95 | 272 |
| MS.gene36512.t1 | MTR_3g112410 | 44.118 | 68 | 38 | 0 | 66 | 133 | 2 | 69 | 1.02e-15 | 69.3 |
| MS.gene36512.t1 | MTR_1g023140 | 42.647 | 68 | 39 | 0 | 66 | 133 | 2 | 69 | 2.93e-15 | 68.2 |
| MS.gene36512.t1 | MTR_5g021180 | 39.437 | 71 | 43 | 0 | 63 | 133 | 1 | 71 | 8.25e-15 | 67.0 |
| MS.gene36512.t1 | MTR_8g107460 | 40.000 | 95 | 55 | 2 | 59 | 153 | 243 | 335 | 2.02e-13 | 67.0 |
| MS.gene36512.t1 | MTR_5g037950 | 45.283 | 53 | 27 | 1 | 96 | 148 | 45 | 95 | 9.81e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36512.t1 | AT2G35010 | 47.222 | 144 | 72 | 2 | 9 | 148 | 19 | 162 | 9.08e-38 | 128 |
| MS.gene36512.t1 | AT2G35010 | 47.222 | 144 | 72 | 2 | 9 | 148 | 19 | 162 | 9.08e-38 | 128 |
| MS.gene36512.t1 | AT1G31020 | 53.247 | 77 | 36 | 0 | 72 | 148 | 51 | 127 | 5.11e-28 | 102 |
| MS.gene36512.t1 | AT3G51030 | 42.647 | 68 | 39 | 0 | 66 | 133 | 2 | 69 | 1.55e-14 | 66.2 |
| MS.gene36512.t1 | AT1G45145 | 32.099 | 81 | 53 | 1 | 73 | 153 | 8 | 86 | 5.61e-13 | 62.4 |
| MS.gene36512.t1 | AT5G42980 | 36.066 | 61 | 39 | 0 | 73 | 133 | 8 | 68 | 3.53e-11 | 57.8 |
Find 43 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCGAACGATCAAGTTTC+TGG | 0.176798 | 4.1:+18019959 | None:intergenic |
| CTGATCAATGTCAATCTTAT+AGG | 0.210854 | 4.1:+18018299 | None:intergenic |
| ATCTTATAGGTTGTCACATT+AGG | 0.292559 | 4.1:+18018312 | None:intergenic |
| TCTTATAGGTTGTCACATTA+GGG | 0.354928 | 4.1:+18018313 | None:intergenic |
| AGAAGGTGAGGCGGAGGAAA+GGG | 0.374295 | 4.1:+18019785 | None:intergenic |
| GGCTGCGAAGAGAGACGATT+TGG | 0.381968 | 4.1:+18019860 | None:intergenic |
| GGAGAGGTGAGAAGAGTAAG+AGG | 0.391212 | 4.1:+18019824 | None:intergenic |
| CAAATTCTTACCAAGGTTCA+AGG | 0.403829 | 4.1:-18019723 | MS.gene36512:intron |
| AGGAAAGGGAACGGGATTGA+TGG | 0.407739 | 4.1:+18019799 | None:intergenic |
| AAATTACCACAGATGTAATC+TGG | 0.414197 | 4.1:+18017797 | None:intergenic |
| GGTTCATATCTCCTATAGTT+GGG | 0.417657 | 4.1:-18018353 | MS.gene36512:CDS |
| TTCTGTATTTCACTGCTGCT+TGG | 0.419469 | 4.1:-18019571 | MS.gene36512:CDS |
| GAGAAGGTGAGGCGGAGGAA+AGG | 0.421955 | 4.1:+18019784 | None:intergenic |
| TCCTCCGCCTCACCTTCTCC+TGG | 0.436853 | 4.1:-18019780 | MS.gene36512:CDS |
| TTACTGAGCTCCCCAACTAT+AGG | 0.452451 | 4.1:+18018342 | None:intergenic |
| TTGTTGGTGTTGGTTAAGAA+AGG | 0.458222 | 4.1:+18019900 | None:intergenic |
| TGAGGCGGAGGAAAGGGAAC+GGG | 0.473063 | 4.1:+18019791 | None:intergenic |
| TGAAGGAAGGTTGTTGGTGT+TGG | 0.480298 | 4.1:+18019890 | None:intergenic |
| AAACTTGATCGTTCGATCAA+TGG | 0.483796 | 4.1:-18019955 | MS.gene36512:CDS |
| AAATAACAAACCTTGAACCT+TGG | 0.488491 | 4.1:+18019713 | None:intergenic |
| TTCTTCTTATGAACGGCTGA+TGG | 0.498909 | 4.1:+18017661 | None:intergenic |
| TATTTCACTGCTGCTTGGTG+TGG | 0.517883 | 4.1:-18019566 | MS.gene36512:CDS |
| CCATTTCTTCTTCTTATGAA+CGG | 0.519263 | 4.1:+18017654 | None:intergenic |
| CTATAAGATTGACATTGATC+AGG | 0.528337 | 4.1:-18018298 | MS.gene36512:intron |
| AGGTTCATATCTCCTATAGT+TGG | 0.532050 | 4.1:-18018354 | MS.gene36512:CDS |
| GTGAGGCGGAGGAAAGGGAA+CGG | 0.539310 | 4.1:+18019790 | None:intergenic |
| AAGGGAACGGGATTGATGGA+AGG | 0.548210 | 4.1:+18019803 | None:intergenic |
| AATGCGTGAAGGAAGGTTGT+TGG | 0.553233 | 4.1:+18019884 | None:intergenic |
| GTTCAATCAAATTCTTACCA+AGG | 0.555292 | 4.1:-18019730 | MS.gene36512:CDS |
| CAATTCAAGACACATTGAGC+AGG | 0.558856 | 4.1:-18017822 | MS.gene36512:CDS |
| ATTTGGAAATGCGTGAAGGA+AGG | 0.572690 | 4.1:+18019877 | None:intergenic |
| ACCAGGAGAAGGTGAGGCGG+AGG | 0.577426 | 4.1:+18019779 | None:intergenic |
| AACGGGATTGATGGAAGGAG+AGG | 0.597070 | 4.1:+18019808 | None:intergenic |
| AGACTGAGAGCGAAAATGGT+AGG | 0.606285 | 4.1:-18019984 | None:intergenic |
| GTAAGAGGAAGAAGCAAGTG+TGG | 0.611904 | 4.1:+18019839 | None:intergenic |
| GACGATTTGGAAATGCGTGA+AGG | 0.614344 | 4.1:+18019873 | None:intergenic |
| CACGACTGATGAGTACAAGC+AGG | 0.617658 | 4.1:+18017688 | None:intergenic |
| ACAGAGATAAAACCAGGAGA+AGG | 0.619546 | 4.1:+18019768 | None:intergenic |
| GATAAAACCAGGAGAAGGTG+AGG | 0.619637 | 4.1:+18019773 | None:intergenic |
| GTTCATATCTCCTATAGTTG+GGG | 0.623573 | 4.1:-18018352 | MS.gene36512:CDS |
| GAATTAACAGAGATAAAACC+AGG | 0.626002 | 4.1:+18019762 | None:intergenic |
| CAGGTTCCAGATTACATCTG+TGG | 0.628045 | 4.1:-18017803 | MS.gene36512:intron |
| AAAACCAGGAGAAGGTGAGG+CGG | 0.657278 | 4.1:+18019776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAATATAAAGTTAAAAAA+TGG | + | chr4.1:18019443-18019462 | None:intergenic | 10.0% |
| !! | AAACAATTGATTATATGATT+AGG | + | chr4.1:18019518-18019537 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTCAGAATATAT+AGG | + | chr4.1:18019227-18019246 | None:intergenic | 15.0% |
| !!! | TGATTTAAAATCATATTATC+TGG | + | chr4.1:18018433-18018452 | None:intergenic | 15.0% |
| !! | AAACATTTGAAAAATAGAAG+AGG | + | chr4.1:18018657-18018676 | None:intergenic | 20.0% |
| !! | AAAGAATCATACTAAATCAT+AGG | + | chr4.1:18018290-18018309 | None:intergenic | 20.0% |
| !! | AAAGGAAAACATGTATAAAA+TGG | - | chr4.1:18018580-18018599 | MS.gene36512:intron | 20.0% |
| !! | AATTTATTTAAACCTCTTGT+CGG | - | chr4.1:18019857-18019876 | MS.gene36512:CDS | 20.0% |
| !! | ATAATTGTTAGTATGATGTA+TGG | - | chr4.1:18019369-18019388 | MS.gene36512:intron | 20.0% |
| !! | ATGGTTTAAATATTGGAATT+TGG | - | chr4.1:18019413-18019432 | MS.gene36512:intron | 20.0% |
| !! | ATTTGTTCAAATATTGTTTG+TGG | - | chr4.1:18019886-18019905 | MS.gene36512:CDS | 20.0% |
| !! | CCAATATTTAAACCATAATA+TGG | + | chr4.1:18019409-18019428 | None:intergenic | 20.0% |
| !! | CCATATTATGGTTTAAATAT+TGG | - | chr4.1:18019406-18019425 | MS.gene36512:intron | 20.0% |
| !! | TAATGAAAATCTGAACAAAA+GGG | + | chr4.1:18019666-18019685 | None:intergenic | 20.0% |
| !! | TTATATGTATATGATGTTCT+GGG | - | chr4.1:18018764-18018783 | MS.gene36512:intron | 20.0% |
| !! | TTTATATGTATATGATGTTC+TGG | - | chr4.1:18018763-18018782 | MS.gene36512:intron | 20.0% |
| !!! | CATTCTTCATATATTTTTCT+TGG | - | chr4.1:18019199-18019218 | MS.gene36512:intron | 20.0% |
| !!! | TTTTAAATCATCAACTATGT+AGG | - | chr4.1:18018443-18018462 | MS.gene36512:intron | 20.0% |
| ! | AAGAAAACAGGATAAATGAA+AGG | - | chr4.1:18018562-18018581 | MS.gene36512:intron | 25.0% |
| ! | AAGCATTAAAGAGATAGAAA+TGG | + | chr4.1:18018810-18018829 | None:intergenic | 25.0% |
| ! | ACTTATTTCACTAAGCAAAA+GGG | + | chr4.1:18018114-18018133 | None:intergenic | 25.0% |
| ! | AGTATGAGTATAATAAAGGA+TGG | + | chr4.1:18018222-18018241 | None:intergenic | 25.0% |
| ! | ATGTTCAAAGCAATTGAAAT+AGG | + | chr4.1:18018626-18018645 | None:intergenic | 25.0% |
| ! | CTAATGAAAATCTGAACAAA+AGG | + | chr4.1:18019667-18019686 | None:intergenic | 25.0% |
| ! | TGTCAGTATGAGTATAATAA+AGG | + | chr4.1:18018226-18018245 | None:intergenic | 25.0% |
| ! | TTAGTATGATTCTTTGCAAA+TGG | - | chr4.1:18018295-18018314 | MS.gene36512:intron | 25.0% |
| !! | AACTCTAAAAGTAAGAAAAC+AGG | - | chr4.1:18018550-18018569 | MS.gene36512:intron | 25.0% |
| !! | CTTTTGTTCAGATTTTCATT+AGG | - | chr4.1:18019665-18019684 | MS.gene36512:intron | 25.0% |
| !! | GCTATTGTATATTTCTGTTT+AGG | - | chr4.1:18019258-18019277 | MS.gene36512:intron | 25.0% |
| !! | TGGAATTTTGAACCATATTA+TGG | - | chr4.1:18019394-18019413 | MS.gene36512:intron | 25.0% |
| !!! | CAAATACATGCTTCTAAAAT+TGG | + | chr4.1:18019696-18019715 | None:intergenic | 25.0% |
| !!! | GATATTTTTAACATCCATGA+GGG | + | chr4.1:18019014-18019033 | None:intergenic | 25.0% |
| !!! | TGATATTTTTAACATCCATG+AGG | + | chr4.1:18019015-18019034 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTTTCTTCCACA+TGG | - | chr4.1:18018706-18018725 | MS.gene36512:intron | 25.0% |
| AAAATGTAAAGTGAAGAGAG+AGG | + | chr4.1:18019564-18019583 | None:intergenic | 30.0% | |
| AAATAACAAACCTTGAACCT+TGG | + | chr4.1:18017926-18017945 | None:intergenic | 30.0% | |
| AAATTACCACAGATGTAATC+TGG | + | chr4.1:18019842-18019861 | None:intergenic | 30.0% | |
| ACAAATAAATTTCCGACAAG+AGG | + | chr4.1:18019872-18019891 | None:intergenic | 30.0% | |
| ATAATGATCAATCATTGAGG+AGG | - | chr4.1:18018391-18018410 | MS.gene36512:intron | 30.0% | |
| ATCTTATAGGTTGTCACATT+AGG | + | chr4.1:18019327-18019346 | None:intergenic | 30.0% | |
| ATTGCTTCCTGCAATATATT+AGG | + | chr4.1:18019798-18019817 | None:intergenic | 30.0% | |
| CACTTATTTCACTAAGCAAA+AGG | + | chr4.1:18018115-18018134 | None:intergenic | 30.0% | |
| CTATAAGATTGACATTGATC+AGG | - | chr4.1:18019338-18019357 | MS.gene36512:intron | 30.0% | |
| CTGATCAATGTCAATCTTAT+AGG | + | chr4.1:18019340-18019359 | None:intergenic | 30.0% | |
| CTTATTTCACTAAGCAAAAG+GGG | + | chr4.1:18018113-18018132 | None:intergenic | 30.0% | |
| GAATTAACAGAGATAAAACC+AGG | + | chr4.1:18017877-18017896 | None:intergenic | 30.0% | |
| GCAATAATGATCAATCATTG+AGG | - | chr4.1:18018388-18018407 | MS.gene36512:intron | 30.0% | |
| GTTCAATCAAATTCTTACCA+AGG | - | chr4.1:18017906-18017925 | MS.gene36512:intron | 30.0% | |
| TCTTATAGGTTGTCACATTA+GGG | + | chr4.1:18019326-18019345 | None:intergenic | 30.0% | |
| TGTTAGTATGATGTATGGTT+TGG | - | chr4.1:18019374-18019393 | MS.gene36512:intron | 30.0% | |
| TTCTGATCTACATCTGAATT+CGG | - | chr4.1:18018963-18018982 | MS.gene36512:intron | 30.0% | |
| ! | AATGCTTTTACACAGGTATT+TGG | + | chr4.1:18019125-18019144 | None:intergenic | 30.0% |
| ! | CTTTTCAAATTTTGCTACCT+CGG | - | chr4.1:18019596-18019615 | MS.gene36512:intron | 30.0% |
| ! | GGAGGGAAATGTAAATATTT+TGG | + | chr4.1:18019777-18019796 | None:intergenic | 30.0% |
| ! | TCTCTCTTCACTTTACATTT+TGG | - | chr4.1:18019563-18019582 | MS.gene36512:CDS | 30.0% |
| ! | TGAATTCGGATTAGGATATT+AGG | - | chr4.1:18018977-18018996 | MS.gene36512:intron | 30.0% |
| ! | TTAGAAGCATGTATTTGTGA+TGG | - | chr4.1:18019699-18019718 | MS.gene36512:intron | 30.0% |
| ! | TTGTATATTTCTGTTTAGGC+AGG | - | chr4.1:18019262-18019281 | MS.gene36512:intron | 30.0% |
| !! | TCTTCACTTTACATTTTGGT+TGG | - | chr4.1:18019567-18019586 | MS.gene36512:CDS | 30.0% |
| AAACTTGATCGTTCGATCAA+TGG | - | chr4.1:18017681-18017700 | MS.gene36512:CDS | 35.0% | |
| AAAGGGGTTAAGAACTTACA+AGG | + | chr4.1:18018097-18018116 | None:intergenic | 35.0% | |
| AGATTGACATTGATCAGGTA+TGG | - | chr4.1:18019343-18019362 | MS.gene36512:intron | 35.0% | |
| AGGTTCATATCTCCTATAGT+TGG | - | chr4.1:18019282-18019301 | MS.gene36512:intron | 35.0% | |
| ATGTGTCTGCTAAACTCAAA+TGG | - | chr4.1:18018737-18018756 | MS.gene36512:intron | 35.0% | |
| CAAATTCTTACCAAGGTTCA+AGG | - | chr4.1:18017913-18017932 | MS.gene36512:intron | 35.0% | |
| CTTCCTGCAATATATTAGGA+GGG | + | chr4.1:18019794-18019813 | None:intergenic | 35.0% | |
| GAAGAATGAAACATGAACAC+AGG | + | chr4.1:18019187-18019206 | None:intergenic | 35.0% | |
| GGTTCATATCTCCTATAGTT+GGG | - | chr4.1:18019283-18019302 | MS.gene36512:intron | 35.0% | |
| GTTCATATCTCCTATAGTTG+GGG | - | chr4.1:18019284-18019303 | MS.gene36512:intron | 35.0% | |
| TAGCATGTTTGTGATCTAGT+AGG | - | chr4.1:18018918-18018937 | MS.gene36512:intron | 35.0% | |
| TAGCTCATAATTGTCACAAG+AGG | - | chr4.1:18018172-18018191 | MS.gene36512:intron | 35.0% | |
| TCTACATCTGAATTCGGATT+AGG | - | chr4.1:18018969-18018988 | MS.gene36512:intron | 35.0% | |
| TTGAAAGCTATGCATCAAAG+TGG | - | chr4.1:18019743-18019762 | MS.gene36512:CDS | 35.0% | |
| TTTCCCTCCTAATATATTGC+AGG | - | chr4.1:18019788-18019807 | MS.gene36512:CDS | 35.0% | |
| ! | AACTTGCAATGCTTTTACAC+AGG | + | chr4.1:18019132-18019151 | None:intergenic | 35.0% |
| ! | TTTTCTTCCACATGGATCTT+TGG | - | chr4.1:18018714-18018733 | MS.gene36512:intron | 35.0% |
| !! | TTGTTGGTGTTGGTTAAGAA+AGG | + | chr4.1:18017739-18017758 | None:intergenic | 35.0% |
| !!! | TTACTTTTAGAGTTCCTTCC+TGG | + | chr4.1:18018544-18018563 | None:intergenic | 35.0% |
| ACAGAGATAAAACCAGGAGA+AGG | + | chr4.1:18017871-18017890 | None:intergenic | 40.0% | |
| ACCAGATCCTAATAAGGAGA+TGG | + | chr4.1:18019636-18019655 | None:intergenic | 40.0% | |
| AGGATGGCACAAATTATACG+TGG | + | chr4.1:18018206-18018225 | None:intergenic | 40.0% | |
| ATCTCCTTATTAGGATCTGG+TGG | - | chr4.1:18019635-18019654 | MS.gene36512:intron | 40.0% | |
| ATGATCAATCATTGAGGAGG+AGG | - | chr4.1:18018394-18018413 | MS.gene36512:intron | 40.0% | |
| ATTTGGAAATGCGTGAAGGA+AGG | + | chr4.1:18017762-18017781 | None:intergenic | 40.0% | |
| CAATTCAAGACACATTGAGC+AGG | - | chr4.1:18019814-18019833 | MS.gene36512:CDS | 40.0% | |
| CATAGATATACCCACAGAAG+TGG | + | chr4.1:18018688-18018707 | None:intergenic | 40.0% | |
| CGAAACAAGAGTTCCACATT+TGG | - | chr4.1:18018846-18018865 | MS.gene36512:intron | 40.0% | |
| CTCTACTTCAGAACCAAATG+TGG | + | chr4.1:18018862-18018881 | None:intergenic | 40.0% | |
| GAAACCACCAGATCCTAATA+AGG | + | chr4.1:18019642-18019661 | None:intergenic | 40.0% | |
| GCTTCCTGCAATATATTAGG+AGG | + | chr4.1:18019795-18019814 | None:intergenic | 40.0% | |
| GTTTGTGATCTAGTAGGAAC+TGG | - | chr4.1:18018924-18018943 | MS.gene36512:intron | 40.0% | |
| TATCTGGCCATCTCCTTATT+AGG | - | chr4.1:18019626-18019645 | MS.gene36512:intron | 40.0% | |
| TCCTTCCTGGATATGAAACT+CGG | + | chr4.1:18018531-18018550 | None:intergenic | 40.0% | |
| TGAAGAGAGAGGTAGAAATC+AGG | + | chr4.1:18019553-18019572 | None:intergenic | 40.0% | |
| TGATCGAACGATCAAGTTTC+TGG | + | chr4.1:18017680-18017699 | None:intergenic | 40.0% | |
| TTAACATCCATGAGGGAGTT+TGG | + | chr4.1:18019007-18019026 | None:intergenic | 40.0% | |
| TTCTGTATTTCACTGCTGCT+TGG | - | chr4.1:18018065-18018084 | MS.gene36512:intron | 40.0% | |
| ! | TCAATTGCTTTGAACATGCG+AGG | - | chr4.1:18018629-18018648 | MS.gene36512:intron | 40.0% |
| AATGCGTGAAGGAAGGTTGT+TGG | + | chr4.1:18017755-18017774 | None:intergenic | 45.0% | |
| ACTACCCGAGTTTCATATCC+AGG | - | chr4.1:18018523-18018542 | MS.gene36512:intron | 45.0% | |
| ATAGATTCCTGCTGTTGCTC+TGG | - | chr4.1:18019071-18019090 | MS.gene36512:intron | 45.0% | |
| CAGGTTCCAGATTACATCTG+TGG | - | chr4.1:18019833-18019852 | MS.gene36512:CDS | 45.0% | |
| CCTTCCTGGATATGAAACTC+GGG | + | chr4.1:18018530-18018549 | None:intergenic | 45.0% | |
| CTACCTCGGTAACAACTATC+TGG | - | chr4.1:18019610-18019629 | MS.gene36512:intron | 45.0% | |
| GACACATCCAAAGATCCATG+TGG | + | chr4.1:18018724-18018743 | None:intergenic | 45.0% | |
| GATAAAACCAGGAGAAGGTG+AGG | + | chr4.1:18017866-18017885 | None:intergenic | 45.0% | |
| GCCATCTCCTTATTAGGATC+TGG | - | chr4.1:18019632-18019651 | MS.gene36512:intron | 45.0% | |
| GCTCTTAGCAGATTGTCTAC+GGG | + | chr4.1:18019165-18019184 | None:intergenic | 45.0% | |
| GGCTCTTAGCAGATTGTCTA+CGG | + | chr4.1:18019166-18019185 | None:intergenic | 45.0% | |
| GTAAGAGGAAGAAGCAAGTG+TGG | + | chr4.1:18017800-18017819 | None:intergenic | 45.0% | |
| TATGCATCAAAGTGGCAGAG+TGG | - | chr4.1:18019751-18019770 | MS.gene36512:CDS | 45.0% | |
| TGAAGGAAGGTTGTTGGTGT+TGG | + | chr4.1:18017749-18017768 | None:intergenic | 45.0% | |
| TTACTGAGCTCCCCAACTAT+AGG | + | chr4.1:18019297-18019316 | None:intergenic | 45.0% | |
| ! | GACGATTTGGAAATGCGTGA+AGG | + | chr4.1:18017766-18017785 | None:intergenic | 45.0% |
| ! | TATTTCACTGCTGCTTGGTG+TGG | - | chr4.1:18018070-18018089 | MS.gene36512:intron | 45.0% |
| AAAACCAGGAGAAGGTGAGG+CGG | + | chr4.1:18017863-18017882 | None:intergenic | 50.0% | |
| AACGGGATTGATGGAAGGAG+AGG | + | chr4.1:18017831-18017850 | None:intergenic | 50.0% | |
| AAGGGAACGGGATTGATGGA+AGG | + | chr4.1:18017836-18017855 | None:intergenic | 50.0% | |
| AGGAAAGGGAACGGGATTGA+TGG | + | chr4.1:18017840-18017859 | None:intergenic | 50.0% | |
| AGGTTCACCAAACTCCCTCA+TGG | - | chr4.1:18018997-18019016 | MS.gene36512:intron | 50.0% | |
| CACGACTGATGAGTACAAGC+AGG | + | chr4.1:18019951-18019970 | None:intergenic | 50.0% | |
| CCCGAGTTTCATATCCAGGA+AGG | - | chr4.1:18018527-18018546 | MS.gene36512:intron | 50.0% | |
| CTGCTGTTGCTCTGGTTGAA+AGG | - | chr4.1:18019079-18019098 | MS.gene36512:intron | 50.0% | |
| CTTTCAACCAGAGCAACAGC+AGG | + | chr4.1:18019081-18019100 | None:intergenic | 50.0% | |
| GGAGAGGTGAGAAGAGTAAG+AGG | + | chr4.1:18017815-18017834 | None:intergenic | 50.0% | |
| TGGCCAGATAGTTGTTACCG+AGG | + | chr4.1:18019616-18019635 | None:intergenic | 50.0% | |
| TTGTCAGCAGCCACTTCTGT+GGG | - | chr4.1:18018675-18018694 | MS.gene36512:intron | 50.0% | |
| TTTGTCAGCAGCCACTTCTG+TGG | - | chr4.1:18018674-18018693 | MS.gene36512:intron | 50.0% | |
| AGAAGGTGAGGCGGAGGAAA+GGG | + | chr4.1:18017854-18017873 | None:intergenic | 55.0% | |
| GGCTGCGAAGAGAGACGATT+TGG | + | chr4.1:18017779-18017798 | None:intergenic | 55.0% | |
| GAGAAGGTGAGGCGGAGGAA+AGG | + | chr4.1:18017855-18017874 | None:intergenic | 60.0% | |
| GTGAGGCGGAGGAAAGGGAA+CGG | + | chr4.1:18017849-18017868 | None:intergenic | 60.0% | |
| TGAGGCGGAGGAAAGGGAAC+GGG | + | chr4.1:18017848-18017867 | None:intergenic | 60.0% | |
| ACCAGGAGAAGGTGAGGCGG+AGG | + | chr4.1:18017860-18017879 | None:intergenic | 65.0% | |
| TCCTCCGCCTCACCTTCTCC+TGG | - | chr4.1:18017856-18017875 | MS.gene36512:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18017667 | 18019991 | 18017667 | ID=MS.gene36512 |
| chr4.1 | mRNA | 18017667 | 18019991 | 18017667 | ID=MS.gene36512.t1;Parent=MS.gene36512 |
| chr4.1 | exon | 18019724 | 18019991 | 18019724 | ID=MS.gene36512.t1.exon1;Parent=MS.gene36512.t1 |
| chr4.1 | CDS | 18019724 | 18019991 | 18019724 | ID=cds.MS.gene36512.t1;Parent=MS.gene36512.t1 |
| chr4.1 | exon | 18019561 | 18019611 | 18019561 | ID=MS.gene36512.t1.exon2;Parent=MS.gene36512.t1 |
| chr4.1 | CDS | 18019561 | 18019611 | 18019561 | ID=cds.MS.gene36512.t1;Parent=MS.gene36512.t1 |
| chr4.1 | exon | 18018299 | 18018378 | 18018299 | ID=MS.gene36512.t1.exon3;Parent=MS.gene36512.t1 |
| chr4.1 | CDS | 18018299 | 18018378 | 18018299 | ID=cds.MS.gene36512.t1;Parent=MS.gene36512.t1 |
| chr4.1 | exon | 18017804 | 18017848 | 18017804 | ID=MS.gene36512.t1.exon4;Parent=MS.gene36512.t1 |
| chr4.1 | CDS | 18017804 | 18017848 | 18017804 | ID=cds.MS.gene36512.t1;Parent=MS.gene36512.t1 |
| chr4.1 | exon | 18017667 | 18017714 | 18017667 | ID=MS.gene36512.t1.exon5;Parent=MS.gene36512.t1 |
| chr4.1 | CDS | 18017667 | 18017714 | 18017667 | ID=cds.MS.gene36512.t1;Parent=MS.gene36512.t1 |
| Gene Sequence |
| Protein sequence |
