AlfalfaGEDB | MS.gene36614

M. sativa cultivar XinJiangDaYe / MS.gene36614

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36614.t1	RHN39165.1	83.3	872	141	2	1	868	1	871	0.00E+00	1364

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36614.t1	C0LGD6	50.6	842	392	15	18	844	19	851	1.1e-204	714.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36614.t1	G7LHD2	83.3	872	141	2	1	868	2	872	0.0e+00	1364.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene36614	MS.gene85183	PPI
MS.gene36614	MS.gene76570	PPI
MS.gene36614	MS.gene36388	PPI
MS.gene36614	MS.gene069905	PPI
MS.gene36614	MS.gene85182	PPI
MS.gene36614	MS.gene36389	PPI
MS.gene36614	MS.gene069903	PPI
MS.gene76573	MS.gene36614	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene36614.t1	MTR_8g014790	83.028	872	143	2	1	868	2	872	1508
MS.gene36614.t1	MTR_8g014760	77.460	874	183	9	1	868	2	867	1376
MS.gene36614.t1	MTR_8g014700	76.914	875	191	8	1	868	6	876	1375
MS.gene36614.t1	MTR_8g014700	74.861	899	191	9	1	868	6	900	1360
MS.gene36614.t1	MTR_8g014690	76.765	878	190	9	1	868	1	874	1341
MS.gene36614.t1	MTR_8g015150	75.457	876	195	8	1	868	2	865	1329
MS.gene36614.t1	MTR_8g014930	74.592	858	203	9	20	868	19	870	1307
MS.gene36614.t1	MTR_8g028110	73.349	878	218	10	1	868	6	877	1266
MS.gene36614.t1	MTR_8g015200	73.723	822	207	7	30	847	10	826	1244
MS.gene36614.t1	MTR_8g014930	71.529	857	192	9	20	868	24	836	1237

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene36614.t1	AT1G05700	48.541	857	415	17	5	844	4	851	771
MS.gene36614.t1	AT4G29990	47.262	840	420	11	15	836	12	846	768
MS.gene36614.t1	AT1G05700	47.248	872	407	16	18	844	19	882	758
MS.gene36614.t1	AT2G19210	45.276	868	442	17	8	852	9	866	751
MS.gene36614.t1	AT2G19230	46.102	885	435	18	1	860	1	868	748
MS.gene36614.t1	AT2G19230	46.050	886	435	18	1	860	1	869	746
MS.gene36614.t1	AT1G51880	44.912	855	442	18	5	843	4	845	722
MS.gene36614.t1	AT1G51880	44.912	855	442	18	5	843	22	863	722
MS.gene36614.t1	AT1G51790	45.309	874	437	18	12	858	11	870	722
MS.gene36614.t1	AT1G51790	45.309	874	437	18	12	858	11	870	722

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Find 167 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACTATTGGAGAAGG+AGG	0.594587	8.4:-76495420	MS.gene36614:CDS
AAAATCCAAAAGAAATCAAA+AGG	0.477655	8.4:+76495882	None:intergenic
AAAATGATATCTACAGCTTT+GGG	0.378641	8.4:-76493246	MS.gene36614:CDS
AAAATTCAAATAACTTAAGT+TGG	0.418230	8.4:-76494612	MS.gene36614:CDS
AAACAGGTTCATTATCACTG+AGG	0.742559	8.4:-76496204	MS.gene36614:intron
AAACATCAAGAATGCTTATG+GGG	0.623307	8.4:-76496895	MS.gene36614:CDS
AAACCATTCACATACTTCAA+TGG	0.393496	8.4:-76493168	MS.gene36614:CDS
AAACTCAAGTCGCTGTTAAG+AGG	0.413756	8.4:-76495362	MS.gene36614:CDS
AAAGGGGCACTAGCATTTAC+TGG	0.388965	8.4:+76497625	None:intergenic
AAAGTGTTGGAGATTTCCAT+TGG	0.522599	8.4:+76495067	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATCAAGAATGCTTATG+GGG	-	chr8.4:76494559-76494578	MS.gene36614:intron	30.0%
AAACCATTCACATACTTCAA+TGG	-	chr8.4:76498286-76498305	MS.gene36614:CDS	30.0%
AAATCTCTATGCATAATAGG+CGG	+	chr8.4:76497006-76497025	None:intergenic	30.0%
AAATGAAGATCAAATTCTGG+TGG	+	chr8.4:76493333-76493352	None:intergenic	30.0%
AACCATTCACATACTTCAAT+GGG	-	chr8.4:76498287-76498306	MS.gene36614:CDS	30.0%
AATCCTGAAAATTCACACTA+AGG	+	chr8.4:76496958-76496977	None:intergenic	30.0%
ACAAACATCAAGAATGCTTA+TGG	-	chr8.4:76494557-76494576	MS.gene36614:intron	30.0%
ACAAGTTACCTTTCAAAAGA+GGG	+	chr8.4:76494332-76494351	None:intergenic	30.0%
ACAGTAAACTTTGTGCAAAT+TGG	-	chr8.4:76494456-76494475	MS.gene36614:CDS	30.0%
ACTTACAAAGATGTGATTCT+TGG	+	chr8.4:76494674-76494693	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	76492892	76498584	76492892	ID=MS.gene36614
chr8.4	mRNA	76492892	76498584	76492892	ID=MS.gene36614.t1;Parent=MS.gene36614
chr8.4	exon	76498500	76498584	76498500	ID=MS.gene36614.t1.exon1;Parent=MS.gene36614.t1
chr8.4	CDS	76498500	76498584	76498500	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76497869	76498415	76497869	ID=MS.gene36614.t1.exon2;Parent=MS.gene36614.t1
chr8.4	CDS	76497869	76498415	76497869	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76497323	76497783	76497323	ID=MS.gene36614.t1.exon3;Parent=MS.gene36614.t1
chr8.4	CDS	76497323	76497783	76497323	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76496789	76496930	76496789	ID=MS.gene36614.t1.exon4;Parent=MS.gene36614.t1
chr8.4	CDS	76496789	76496930	76496789	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76496632	76496703	76496632	ID=MS.gene36614.t1.exon5;Parent=MS.gene36614.t1
chr8.4	CDS	76496632	76496703	76496632	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76496378	76496449	76496378	ID=MS.gene36614.t1.exon6;Parent=MS.gene36614.t1
chr8.4	CDS	76496378	76496449	76496378	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76496205	76496285	76496205	ID=MS.gene36614.t1.exon7;Parent=MS.gene36614.t1
chr8.4	CDS	76496205	76496285	76496205	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76495861	76496000	76495861	ID=MS.gene36614.t1.exon8;Parent=MS.gene36614.t1
chr8.4	CDS	76495861	76496000	76495861	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76495317	76495540	76495317	ID=MS.gene36614.t1.exon9;Parent=MS.gene36614.t1
chr8.4	CDS	76495317	76495540	76495317	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76495063	76495186	76495063	ID=MS.gene36614.t1.exon10;Parent=MS.gene36614.t1
chr8.4	CDS	76495063	76495186	76495063	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76494575	76494637	76494575	ID=MS.gene36614.t1.exon11;Parent=MS.gene36614.t1
chr8.4	CDS	76494575	76494637	76494575	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76494313	76494502	76494313	ID=MS.gene36614.t1.exon12;Parent=MS.gene36614.t1
chr8.4	CDS	76494313	76494502	76494313	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1
chr8.4	exon	76492892	76493297	76492892	ID=MS.gene36614.t1.exon13;Parent=MS.gene36614.t1
chr8.4	CDS	76492892	76493297	76492892	ID=cds.MS.gene36614.t1;Parent=MS.gene36614.t1

Gene Sequence

>MS.gene36614

ATGGGAATGTTAATGCATTTTCTTTTGGTATTGTTTGGTGTTCTTGCTACTATTTTGGTTTTGATACAAGCTCAGGATCAATCAGGTTTGGCTATGAATTTCTCTATAGCTCTTTCTGTCACATATTAGTAGTTGATGTTATCTTAAGTTTTTCTTATATATATCTCAGGATTCATTAGCATAGATTGTGGCCTACCTGAACATTCAAGCTACTCTGATAGAATCACAGACCTAAGTTACATTTCAGACGCCAAATTCATAGATACAGGTGTAACTAAGAGGATACCTCCTACAAATATTATTATCAAACAGCAACTAGAATATGTGAGGAGCTTTCCTAGTGGAGTGAGAAATTGTTATAACATAAGTGTAACAAGTGGTACTAAATATTTAATCAGAGCTACTTTCTATTATGGTAACTATGATGGTCTAAATGAGCCACCAGAATTTGATCTTCATTTTGGAGCTAATGTATGGGATACAGTGAAATTGTCCTCCAATGCATCACGCGCCACAATCAAGGAGATAATTTACACTCCATTATTAGATTACATACAACCATGTCTTGTTAGCACAGGCAAAGGGACTCCATTCATTTCAGTTGTAGAATTGAGGACTTTGAACAATGAAACTTATGTCACAAACTCACCTAAATCATCAGTATTATCACCCCTCAGACGATCTGATGTAGGTTCCATCGCAGACAAACAATACAGGTAAGATGAGAGTCAGCTAGCAGCACATTAATTAGCTTACTTTAATATTTATATAAATAAATAAATAACTGATTTTTTTGGCCAGGTACAAAGATGATGTTTACGATCGCATCTGGTTACCTTTTCAATTGAATGAGACGAAACGATTTAGCACCAATAAGGATCTATTAATTCAGAGTAGTTATAAACTACCAGCAATTGTGATGAGCACTGCTGTTACACCAGTAAATGCTAGTGCCCCTTTACAATTTCATTGGAATTCAGATAATATAAATGATCAATACTATCTTTACATGCACTTTTGTGAGGTTGAAGAGATGGCAGCAAATGATACTAGAGCGTTCAATATCTCAGTGAATGACAAGTTTCAGTATGGACCTGTGACACCATATACTACCATATTTAATAGAAAACCTATGACTGGAGCCAAAAGGTATCAAGTTTCCCTTTCTAAGACACAGAATTCAACCCTTCCACCTATTATCAATGCCTTTGAGGTTTATAAACTAAAAGACTTCTCAAAATCAGAAACTCAACAAGATGATGGTAAGCTAGCCCTTTCTTTAATTGAAAAACATACTACCTCCTCCGTCCTTAAATATAGTATCCTCTTGGTATATATTCAATTGCATGAATTATTTCTTTACTAACATACACCTAATTATCTTACATCTTTTTCTGTAATTTGTAAAGAATATTATGATGAAAACATAAACTAATCCCCTCTTTTGAAAGGTAACTTGTAAAACAATATTAACACTTAACAAATTTAATACTGCTACCAACTTGCTTAATTCCAGTGATTTAGTCAACATATATAAGGACGAAGGTAGTATCATTTGTGGCGTACAGTAAACTTTGTGCAAATTGGCTTGAAATCCTTTTAACTGTTTTATTATCCTTTTAACTGTTTTATTTTTTTGAATACCAAATACAAGTTGATACTATGACAAACATCAAGAATGCTTATGGGGTTGCGAGAAATTGGCAAGGAGATCCATGTGGTCCTGTGAAGTATATGTGGGAAGGCCTAAACTGCAGTTTTGATGGTGGAAATAACCCCCCAAGAATCACATCTTTGTAAGTTTGTAATTCCTTAAACCATATGCATAAATTCAAAAACTTAAATTATCCTCTGATGCTATATATTTGGAAATGCAACCAGGAATTTGTCTTCAAGTGGATTGACAGGGGAGATACCATCTTCCATATCAAAGCTCGCTATGTTGCAATACTTGTGAGTTCCTATTTAAAATATCAAATATATACCAAAATATAGACCAGGCAATACGCCTGCACGCGGGGAGAATAAATCTCATTTGGTTAAATAATGAAACCAAATCCATTCAATTTGGAAATTATTATCTATTTATTTGGGATTGAAAATTGTAACTCTGTGTTTAAATTAATTACTTTAAGGGATTTATCAAACAATAGCTTGAACGGTCCTTTACCTGATTTTCTGATGCAGCTGAGGTCGCTAAAAACCTTGTAAGTCCCATGTTGATGCATCTAATGTAATTTCATTGATTATTAGTATAAACGATAAAAAAAGATGTCATATATTTGTTCTCTGTTGGCAGAAATGTAGGGAAGAACAAACTTACAGGGTCAGTTCCAAGTGGACTCCATGAGAGATCAAAAACAGGTTCATTATCACTGAGGTATACCTCATACTCAAAGTCAAAGCTATATTAATTCATAGTATATTCAAGAAAAAGATAGACTTGTAATACAATCTTTTTTCTTCTTATAATCTTAATAATAATAAATTCAGCAATGGTAATTGAGTTTTCTTCCTCCTAATACGAATATGGTTTCACCAATGAAATTATAACTAATATCTTAGCACCTTTATCTTTTTTCAGTGTCGATGATAATCCTGATCTTTGTATGATGGAATCCTGCAAAAAGAAGAACATTCTTGTACCACTTGTTGCATCGTTTTCAGCATTATTTGTAATCCTTTTGATTTCTTTTGGATTTTGGATATTCAGAAGACAAAAAGGTACTTCACAGACGACATAGGAACGAGTTCATATTCTTAAATAAGGTCTTGTTTATACTATGAATAGCGTATTAATCCATTTTTTGCATGTATATCTTATAAGTTGCTACATGGTTTTAACTTGTTGTGGTCGTGGATTTGGCTAATGCGGTCGCAGTGTTGCACATTGTTCATAACATAACATATATTAGATTCGACTATCCATAAAACTTTAGCTATATATATAGTGTTTTATACTTGTGTGTAAAACTTTTATTGCTTTTCTGTCACATATTTTTTCTTCATCTTTGCATATTTTAATTCAATTTTATTTATCACAGTTGTACTTACGTCTCCAAATTATAAGGAAAGGGGTTCAATGAAATCAAGACACCAAATATTCAGTTATTCTGAAATTCTCAACATTACTGATAACTTCAAAACTACTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTCGGCATTCTACACGATCAAACTCAAGTCGCTGTTAAGAGGTTTTCACCATCATCAATGCAAGGTTATAAGGAATTTCAATCAGAGGTTAGATATACATTCAAGTTAAAAACAACATAATCAATTTTTATTTTAGTTAAGTAATATTTAAAATGAGAATCCTGCATTATTTTCACAGTTAACCTTGATAGAGATAAAATTTTAAATATTAATGCAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTGGTTCCCCTCCTTGGATATTGTGATGAAGGTCAAATCAGAGCATTGATTTATGAATACATGGCCAATGGAAATCTCCAACACTTTTTAGGTAATTTATATTTTATCAGCAACCACAACATCAATATTAGATTTACTCCTTCCAGTTTATCTATATTTTAAAGGTTAACTGTTGAAGAATCTTTTTTCATCAACTAAATCGAAGAAACATTAGCAGAGGTAAAATACAAACCTAGTTAAACTTTTTTAGTGCACAATAGTTTATATTATTATAAAAAGAAGGATTATTTTTTAAAAATATTGGGAAAGGAGAAATTATAATTAATAAGGCTACACTAATGTCTCATATGGGATATGAACTCTGTTTCTTGAGATTACAAAGACAAGCTCTTACAACCGAGTTAACACCTTTTGGACGACAAGGATTATGAACAAGGCAGGGAGAATGGCATTTTCCTATGCTTTCGTTTTAAATGCTTGTTCAGTATTTCAAGACTAATGTATGTTTTCATGCAGTGGAAAATTCAAATAACTTAAGTTGGAATGAGAGGCTTAACATTGCAGTTGACACAGCACATGGTAATGTATTGTTTATGGAAGCATGTTTCTTGCACTGTGCACCCTTACATTCCCCTTAGTGTGAATTTTCAGGATTAGATTATCTGCATAATGGATGTAAACCGCCTATTATGCATAGAGATTTGAAGCCTTCAAACATATTGCTAGATGAGAACTTACATGCAAAGATTGCCGATTTTGGTCTAAGTAGAGCTTTTGGTAATGATGATGATTCACATATATCTACACGCCCTGCTGGTACATTTGGTTACGCTGATCCAGTGTAAGTGTAATATAAAAAATCAAATTAGATTGACCGTATTTTAATATTTTGTAGCATTTACTTGGCATAAATATCTATTTCAATTAATGTACTTTGTGACACCAAATTGATGGTTTATATATAAAAGAGGTGACTTATATACTCAATTCTGGAAATTTCCGGAAATGTGGTATCATGTTCTCATGATGGATATGATCACGATCATTATCCTATTTTCTATGATTCTACATTACAATTAAAAGCCATAAAATTAACAATAATTGGCATTCTTAACTAAATAATCAATATCATTACTCATACTATTGTGATATAAAATGCAACCAAACAAAGTTGCAATCAATCATCAATAACATAAACAAAGTAGAGGGAATAGGCATATTCTTACAGTTTCAAAGAGATGCAAATGAGAGGAATGAGGTTGTTGTACGTACGTGACTTGGTGAGGACGGAGAGATGATCGTCGAGCTTCTGGTGAGGTCTGAATGAGACACAAAGCGGAGGCGATTCATTGCTGCAGAATTCCTCGTTGAGCTGTTTACTGGCATCTAACTTCTTGATTGGTGTAGCCTGCCTACTTTTAAGAACTCCATAATATAATCTTCCATAGGATCCCTCTCCAACTAGAGAATCTTGTCCAAAGTTATCAGTAACTTCTTTCAGTTCATCTCCCTGCACTGTGGAATTTATCAGATTAATTTCGTCAAATTCAAATTGGGTAATATAAGCAAACAGATTAACACAGTGAAGTCAATTAATAATAAATTACCACAGTGAAGTGCCTATTATCCCTTCTGACAATGGTTTTCCAGCCGTTGTCTATTCTGTCGTTGCCTAAAGATATAAGTCAGCAAAAGTTAGATGCAATATTCATTTAATTACAGTGCATCTTTTTTTATTTTTTTTTTACATATAGTACTATTTCAGTTGGTTTATAATTTGTATAATAATGAAAAGAAGATAACAAATACATAAGTTTAAAGATCACTTATGCATTTTTTTTTTATTTTCTAAATAGATATCAGAGAACAGGAAAAACAAATAAGAAAAATGATATCTACAGCTTTGGGATAATTCTATTTGAGTTGATCACTGGCCAAAAAGCACTAATAAAAGCAGCTGAAGAAACCATTCACATACTTCAATGGGTTATTCCCATAGTTGAAGGAGGAGATATTCAAAATGTTGTTGATTCAAGGTTGCGGGGTGAATTTAACATCAATTCAGCATGGAAAACAGTAGAGATTGCCATGTCATGCATTTCACAAACTGTATCTGACAGGCCAGACATAAGCCATATATTGGCAGGGTTAAAGGAATGTCTATGTTTGGAGATGGTTCAGAGAAATAATGGAAGCATGAGAGCTCCAGATGAATTCGAATCTGTAGCTACTGTATCAGAATCCACTATTTTAGCTAGATAA

Protein sequence

>MS.gene36614.t1

MGMLMHFLLVLFGVLATILVLIQAQDQSGFISIDCGLPEHSSYSDRITDLSYISDAKFIDTGVTKRIPPTNIIIKQQLEYVRSFPSGVRNCYNISVTSGTKYLIRATFYYGNYDGLNEPPEFDLHFGANVWDTVKLSSNASRATIKEIIYTPLLDYIQPCLVSTGKGTPFISVVELRTLNNETYVTNSPKSSVLSPLRRSDVGSIADKQYRYKDDVYDRIWLPFQLNETKRFSTNKDLLIQSSYKLPAIVMSTAVTPVNASAPLQFHWNSDNINDQYYLYMHFCEVEEMAANDTRAFNISVNDKFQYGPVTPYTTIFNRKPMTGAKRYQVSLSKTQNSTLPPIINAFEVYKLKDFSKSETQQDDVDTMTNIKNAYGVARNWQGDPCGPVKYMWEGLNCSFDGGNNPPRITSLNLSSSGLTGEIPSSISKLAMLQYLDLSNNSLNGPLPDFLMQLRSLKTLNVGKNKLTGSVPSGLHERSKTGSLSLSVDDNPDLCMMESCKKKNILVPLVASFSALFVILLISFGFWIFRRQKVVLTSPNYKERGSMKSRHQIFSYSEILNITDNFKTTIGEGGFGKVYFGILHDQTQVAVKRFSPSSMQGYKEFQSEAQLLMIVHHRNLVPLLGYCDEGQIRALIYEYMANGNLQHFLVENSNNLSWNERLNIAVDTAHGLDYLHNGCKPPIMHRDLKPSNILLDENLHAKIADFGLSRAFGNDDDSHISTRPAGTFGYADPVYQRTGKTNKKNDIYSFGIILFELITGQKALIKAAEETIHILQWVIPIVEGGDIQNVVDSRLRGEFNINSAWKTVEIAMSCISQTVSDRPDISHILAGLKECLCLEMVQRNNGSMRAPDEFESVATVSESTILAR