AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36628

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36628.t1 MTR_8g014520 96.296 270 8 1 1 270 1 268 0.0 529
MS.gene36628.t1 MTR_8g014520 96.255 267 8 1 1 267 1 265 0.0 523
MS.gene36628.t1 MTR_2g100780 56.204 274 94 8 4 269 6 261 3.45e-84 253
MS.gene36628.t1 MTR_2g100780 56.458 271 92 8 4 266 6 258 6.01e-84 253
MS.gene36628.t1 MTR_5g030710 40.884 181 85 4 89 262 154 319 2.78e-33 124
MS.gene36628.t1 MTR_8g067530 39.773 176 88 3 88 262 182 340 3.44e-32 121
MS.gene36628.t1 MTR_6g488150 34.586 266 132 8 3 262 9 238 1.05e-31 118
MS.gene36628.t1 MTR_5g067350 45.098 153 66 5 110 262 197 331 1.88e-30 117
MS.gene36628.t1 MTR_1g069495 37.853 177 89 4 105 262 78 252 4.34e-30 114
MS.gene36628.t1 MTR_1g070520 39.877 163 85 2 97 259 77 226 6.81e-30 113
MS.gene36628.t1 MTR_1g093240 36.216 185 78 4 90 262 64 220 3.88e-29 110
MS.gene36628.t1 MTR_1g093240 33.810 210 118 4 66 273 41 231 6.67e-29 110
MS.gene36628.t1 MTR_2g101500 41.401 157 77 3 106 262 169 310 8.52e-29 112
MS.gene36628.t1 MTR_8g103030 39.869 153 76 3 110 262 141 277 1.53e-28 110
MS.gene36628.t1 MTR_1g080860 42.405 158 76 5 106 262 94 237 3.35e-28 108
MS.gene36628.t1 MTR_1g080860 42.038 157 78 5 106 262 94 237 4.13e-28 108
MS.gene36628.t1 MTR_1g040675 37.580 157 56 4 106 262 64 178 3.85e-26 101
MS.gene36628.t1 MTR_1g070830 30.916 262 106 8 5 262 7 197 7.78e-26 101
MS.gene36628.t1 MTR_1g076270 37.255 153 54 4 110 262 64 174 9.12e-26 100
MS.gene36628.t1 MTR_1g093350 37.255 153 54 4 110 262 64 174 9.12e-26 100
MS.gene36628.t1 MTR_7g096090 36.364 165 87 4 95 259 85 231 3.27e-23 95.5
MS.gene36628.t1 MTR_1g093240 33.161 193 88 5 66 246 41 204 1.87e-22 92.4
MS.gene36628.t1 MTR_1g040675 36.429 140 47 4 106 245 64 161 1.44e-19 83.6
MS.gene36628.t1 MTR_4g011880 33.333 165 65 3 102 266 47 166 5.25e-19 82.4
MS.gene36628.t1 MTR_4g124300 37.143 105 50 1 157 261 94 182 3.52e-18 80.5
MS.gene36628.t1 MTR_1g085750 36.111 108 54 3 152 259 78 170 1.58e-17 78.6
MS.gene36628.t1 MTR_7g110790 37.255 102 49 1 158 259 69 155 1.65e-17 78.2
MS.gene36628.t1 MTR_2g102490 36.893 103 58 1 159 261 88 183 4.67e-16 75.1
MS.gene36628.t1 MTR_3g106850 26.797 153 80 4 110 262 89 209 1.55e-13 68.6
MS.gene36628.t1 MTR_7g062540 32.110 109 52 1 160 268 573 659 3.64e-13 69.7
MS.gene36628.t1 MTR_1g109510 39.604 101 44 2 159 259 85 168 4.16e-13 66.6
MS.gene36628.t1 MTR_4g115075 26.797 153 73 5 109 260 92 206 5.21e-13 66.6
MS.gene36628.t1 MTR_6g488150 31.122 196 94 7 3 192 9 169 1.37e-12 65.5
MS.gene36628.t1 MTR_4g021580 31.731 104 49 1 160 263 558 639 2.04e-12 67.4
MS.gene36628.t1 MTR_5g067350 44.578 83 32 3 110 192 197 265 5.60e-12 64.7
MS.gene36628.t1 MTR_1g085750 34.043 94 47 3 152 245 78 156 3.41e-11 60.8
MS.gene36628.t1 MTR_8g027440 30.769 104 50 1 160 263 561 642 7.11e-11 62.8
MS.gene36628.t1 MTR_8g100050 29.600 125 58 4 135 257 693 789 7.56e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36628.t1 AT3G16500 47.273 275 106 6 2 273 25 263 2.43e-69 215
MS.gene36628.t1 AT3G16500 48.302 265 98 6 2 263 25 253 2.97e-69 215
MS.gene36628.t1 AT1G51950 46.494 271 91 8 2 263 26 251 5.64e-63 199
MS.gene36628.t1 AT5G25890 44.720 161 51 2 101 261 40 162 1.07e-34 123
MS.gene36628.t1 AT2G33310 40.609 197 93 6 82 269 55 236 3.57e-33 121
MS.gene36628.t1 AT2G33310 40.609 197 93 6 82 269 55 236 3.57e-33 121
MS.gene36628.t1 AT2G33310 40.102 197 95 6 82 269 55 237 1.50e-32 120
MS.gene36628.t1 AT4G29080 34.420 276 146 8 4 262 32 289 2.39e-32 121
MS.gene36628.t1 AT4G28640 37.888 161 88 2 106 262 85 237 1.84e-31 117
MS.gene36628.t1 AT4G28640 37.888 161 88 2 106 262 85 237 2.61e-31 117
MS.gene36628.t1 AT4G28640 39.130 161 86 2 106 262 85 237 6.06e-31 117
MS.gene36628.t1 AT2G22670 42.405 158 74 5 106 262 162 303 1.39e-30 116
MS.gene36628.t1 AT2G22670 42.405 158 74 5 106 262 162 303 1.39e-30 116
MS.gene36628.t1 AT2G22670 42.405 158 74 5 106 262 162 303 1.52e-30 116
MS.gene36628.t1 AT2G22670 42.405 158 74 5 106 262 162 303 1.52e-30 116
MS.gene36628.t1 AT2G22670 42.405 158 74 5 106 262 179 320 2.16e-30 116
MS.gene36628.t1 AT1G04240 34.328 201 83 6 68 262 24 181 1.20e-28 108
MS.gene36628.t1 AT1G04240 34.328 201 83 6 68 262 124 281 5.11e-28 109
MS.gene36628.t1 AT5G65670 38.608 158 79 4 106 262 180 320 8.67e-28 109
MS.gene36628.t1 AT5G65670 38.365 159 78 4 106 262 180 320 9.20e-28 109
MS.gene36628.t1 AT1G04100 38.509 161 88 3 111 261 95 254 1.01e-27 107
MS.gene36628.t1 AT1G04550 35.638 188 97 5 82 262 49 219 1.09e-27 107
MS.gene36628.t1 AT1G04250 37.288 177 79 3 91 262 64 213 1.62e-27 106
MS.gene36628.t1 AT3G04730 41.509 159 86 4 106 262 67 220 5.64e-26 102
MS.gene36628.t1 AT4G14550 37.580 157 81 2 106 262 73 212 8.14e-26 102
MS.gene36628.t1 AT4G14550 37.580 157 81 2 106 262 73 212 8.37e-26 102
MS.gene36628.t1 AT5G43700 38.312 154 57 4 110 263 63 178 7.91e-25 98.2
MS.gene36628.t1 AT3G23030 36.646 161 55 3 110 270 61 174 1.19e-24 97.4
MS.gene36628.t1 AT3G23030 37.107 159 53 3 110 268 148 259 4.88e-24 98.2
MS.gene36628.t1 AT3G23050 34.132 167 81 3 106 262 79 226 7.68e-24 97.1
MS.gene36628.t1 AT3G15540 36.970 165 59 5 106 267 67 189 1.47e-23 95.1
MS.gene36628.t1 AT2G46990 41.284 109 48 2 153 261 80 172 1.89e-20 86.3
MS.gene36628.t1 AT3G62100 40.741 108 48 2 153 260 78 169 3.95e-20 85.5
MS.gene36628.t1 AT1G52830 33.333 156 61 3 111 266 72 184 1.63e-19 84.3
MS.gene36628.t1 AT4G14550 35.714 140 73 2 106 245 73 195 4.61e-19 83.2
MS.gene36628.t1 AT3G17600 32.927 164 67 6 96 259 34 154 9.34e-19 81.3
MS.gene36628.t1 AT4G14560 39.252 107 49 2 159 265 76 166 5.32e-18 79.7
MS.gene36628.t1 AT3G23050 31.788 151 74 3 106 246 79 210 5.94e-17 77.8
MS.gene36628.t1 AT1G15580 34.211 152 54 5 110 261 54 159 3.93e-16 74.3
MS.gene36628.t1 AT3G62100 39.785 93 40 2 153 245 78 154 2.50e-13 66.6
MS.gene36628.t1 AT2G46990 39.785 93 40 2 153 245 80 156 3.90e-13 66.2
MS.gene36628.t1 AT2G01200 33.333 108 55 2 155 262 96 186 8.96e-12 63.2
MS.gene36628.t1 AT2G01200 33.333 108 55 2 155 262 96 186 8.96e-12 63.2
MS.gene36628.t1 AT1G04550 32.231 121 68 3 82 195 49 162 1.59e-11 62.0
MS.gene36628.t1 AT1G15050 31.356 118 61 4 148 262 48 148 2.82e-11 60.8
MS.gene36628.t1 AT1G15050 31.356 118 61 4 148 262 80 180 4.57e-11 60.8
MS.gene36628.t1 AT4G14550 35.632 87 42 1 106 192 73 145 5.89e-11 60.5

Find 56 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTACCAGAGTTGCTAAT+AGG 0.291470 8.4:-76683989 None:intergenic
AAGAAGCCACAAGTGTTCTT+TGG 0.323588 8.4:+76683248 MS.gene36628:CDS
GGCCTCCGATTCGTTCATTC+AGG 0.338350 8.4:+76683879 MS.gene36628:CDS
GAAATTCAGCTTTACCAAAC+AGG 0.360417 8.4:+76683517 MS.gene36628:CDS
ATGATCAACGTTTACCTTCA+AGG 0.384045 8.4:-76684126 None:intergenic
AATATGGATGGAGTTCCTAT+TGG 0.394972 8.4:+76684028 MS.gene36628:CDS
CTTCAAGGAGACCTCTAAAT+AGG 0.400379 8.4:-76684111 None:intergenic
GCTGTTGATGACCTATTTAG+AGG 0.418459 8.4:+76684100 MS.gene36628:CDS
GAAGGAGACAAGATGCTTGT+AGG 0.431752 8.4:+76684788 MS.gene36628:CDS
AAGCAAGAGGAAGAAGATAA+AGG 0.433944 8.4:+76684710 MS.gene36628:CDS
AGCAGGAAGATCAGAACTCT+TGG 0.434060 8.4:-76685153 None:intergenic
CTATTTAGAGGTCTCCTTGA+AGG 0.443321 8.4:+76684112 MS.gene36628:CDS
AAAGGATCATTGACTGGAAG+TGG 0.456184 8.4:+76684737 MS.gene36628:CDS
ATATGGATGGAGTTCCTATT+GGG 0.456891 8.4:+76684029 MS.gene36628:CDS
GCTGAATTTCTTGCAGAAGA+AGG 0.458077 8.4:-76683504 None:intergenic
GCCTACTGAGTCCCGGCCTA+TGG 0.458539 8.4:+76683934 MS.gene36628:CDS
CTTGTTTGTGAAGATCAATA+TGG 0.475066 8.4:+76684012 MS.gene36628:CDS
AAGGAGACAAGATGCTTGTA+GGG 0.476173 8.4:+76684789 MS.gene36628:CDS
TTCTTTGGAGGAGAGGAAGT+TGG 0.476777 8.4:+76683263 MS.gene36628:CDS
AATGCTGCTGGTCCAGTAGT+AGG 0.479799 8.4:+76683854 MS.gene36628:CDS
ATTGACATCAATGCTTATGA+TGG 0.483130 8.4:+76684058 MS.gene36628:CDS
CTTGTTTATGAAGATAATGA+AGG 0.488627 8.4:+76684770 MS.gene36628:CDS
CCTATTAGCAACTCTGGTAA+AGG 0.491874 8.4:+76683989 MS.gene36628:CDS
TACCAAACAGGTCTCAGAAA+AGG 0.493666 8.4:+76683529 MS.gene36628:CDS
GAAGAAGATAAAGGCATCAA+AGG 0.503044 8.4:+76684719 MS.gene36628:CDS
GCAGAGATAAATTTATCTCA+TGG 0.505424 8.4:+76684677 MS.gene36628:intron
ATCGGAGGCCAACCTACTAC+TGG 0.509519 8.4:-76683866 None:intergenic
GAGCTTAGACTTGGTCCACC+TGG 0.509843 8.4:+76683285 MS.gene36628:CDS
GAAGAATCATCACTCACTCT+TGG 0.524837 8.4:+76683363 MS.gene36628:CDS
GGCATCAAAGGATCATTGAC+TGG 0.528381 8.4:+76684731 MS.gene36628:CDS
CTGCTGGTCCAGTAGTAGGT+TGG 0.531744 8.4:+76683858 MS.gene36628:CDS
AAGCCACAAGTGTTCTTTGG+AGG 0.532124 8.4:+76683251 MS.gene36628:CDS
TTCTTCCTGAATGAACGAAT+CGG 0.538928 8.4:-76683884 None:intergenic
AACTAAAACAGAAATGCTGC+TGG 0.539267 8.4:+76683842 MS.gene36628:intron
AGGAAGTTGGAGCTTAGACT+TGG 0.541596 8.4:+76683276 MS.gene36628:CDS
ACAAGTGTTCTTTGGAGGAG+AGG 0.544453 8.4:+76683256 MS.gene36628:CDS
TGCTTGTAGGGGACGTGCCG+TGG 0.551530 8.4:+76684801 MS.gene36628:CDS
TTGACAAACTCTTCTTCACC+AGG 0.560561 8.4:-76683303 None:intergenic
CCTTGTCTTGAACCATAGGC+CGG 0.561981 8.4:-76683946 None:intergenic
CCGGCCTATGGTTCAAGACA+AGG 0.569410 8.4:+76683946 MS.gene36628:CDS
TTCAGGAAGAACATTGCAAG+TGG 0.570187 8.4:+76683896 MS.gene36628:CDS
TCTTGCAAGTTTGTGCAACA+AGG 0.574470 8.4:-76683459 None:intergenic
ATAACCTTGTCTTGAACCAT+AGG 0.576939 8.4:-76683950 None:intergenic
ACCATAGGCCGGGACTCAGT+AGG 0.584604 8.4:-76683935 None:intergenic
TGGAATTAACAAGAAGCAAG+AGG 0.591043 8.4:+76684697 MS.gene36628:CDS
CTAAGCCGCCTACTGAGTCC+CGG 0.597620 8.4:+76683927 MS.gene36628:CDS
CTTGTCTTGAACCATAGGCC+GGG 0.603934 8.4:-76683945 None:intergenic
TTTGTGAAGATCAATATGGA+TGG 0.610573 8.4:+76684016 MS.gene36628:CDS
TGATAAGATACTTACTGCCA+CGG 0.622281 8.4:-76684818 None:intergenic
TGTTTGTATCAACAGTGAAG+AGG 0.629944 8.4:+76685120 MS.gene36628:CDS
TGTTGCACAAACTTGCAAGA+TGG 0.633974 8.4:+76683462 MS.gene36628:CDS
TCTCCTCCAAAGAACACTTG+TGG 0.635664 8.4:-76683254 None:intergenic
ATAGGCCGGGACTCAGTAGG+CGG 0.638385 8.4:-76683932 None:intergenic
TTCCTGAATGAACGAATCGG+AGG 0.657416 8.4:-76683881 None:intergenic
ACAAACTCTTCTTCACCAGG+TGG 0.675573 8.4:-76683300 None:intergenic
AGGAGACAAGATGCTTGTAG+GGG 0.714162 8.4:+76684790 MS.gene36628:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTAATATGTTTGTT+TGG + chr8.4:76685092-76685111 MS.gene36628:intron 10.0%
!! AATGATTTAGTTATGATAAT+TGG + chr8.4:76685043-76685062 MS.gene36628:intron 15.0%
!! TTAAAACAAAATTCACTTAA+AGG - chr8.4:76684610-76684629 None:intergenic 15.0%
!!! GTATATTTTTAATGATCTAA+CGG - chr8.4:76684551-76684570 None:intergenic 15.0%
!! AAACAAAGTTAATTATGCAT+TGG - chr8.4:76684924-76684943 None:intergenic 20.0%
!! ATAAAGATGTAAATTGTTGT+TGG + chr8.4:76683649-76683668 MS.gene36628:intron 20.0%
!! GAATAGAATAAGATGAAAAA+TGG - chr8.4:76684857-76684876 None:intergenic 20.0%
!! TTGTCCTTAAAATATTTGTT+TGG - chr8.4:76684478-76684497 None:intergenic 20.0%
!!! TTCACCAAACAAATATTTTA+AGG + chr8.4:76684471-76684490 MS.gene36628:intron 20.0%
! AAAACTCACACAATAACATA+GGG - chr8.4:76685011-76685030 None:intergenic 25.0%
! CTTGTTTATGAAGATAATGA+AGG + chr8.4:76684770-76684789 MS.gene36628:CDS 25.0%
! GACACAATTATTGCATTAAA+AGG - chr8.4:76684213-76684232 None:intergenic 25.0%
! TTTCAATCATAACTACTTCT+AGG + chr8.4:76684581-76684600 MS.gene36628:intron 25.0%
!! TGGAAATGTTTTTCTTTGTT+GGG + chr8.4:76684295-76684314 MS.gene36628:intron 25.0%
AAAAAACCTATTAGCAACTC+TGG + chr8.4:76683983-76684002 MS.gene36628:CDS 30.0%
AAAAACTCACTGTTAAAAGC+AGG - chr8.4:76685173-76685192 None:intergenic 30.0%
ATTGACATCAATGCTTATGA+TGG + chr8.4:76684058-76684077 MS.gene36628:CDS 30.0%
CAAAACTCACACAATAACAT+AGG - chr8.4:76685012-76685031 None:intergenic 30.0%
CAAAAGATGTAGGTAACAAA+AGG - chr8.4:76684355-76684374 None:intergenic 30.0%
CTCTCTTATATCTATGTTTG+TGG + chr8.4:76683567-76683586 MS.gene36628:intron 30.0%
CTTGTTTGTGAAGATCAATA+TGG + chr8.4:76684012-76684031 MS.gene36628:CDS 30.0%
GATATAAGAGAGAAAAGCAA+AGG - chr8.4:76683559-76683578 None:intergenic 30.0%
GCAGAGATAAATTTATCTCA+TGG + chr8.4:76684677-76684696 MS.gene36628:intron 30.0%
GCTATTTAGTCAAAAGATGT+AGG - chr8.4:76684365-76684384 None:intergenic 30.0%
TATCAAGAACAACATTCACT+CGG - chr8.4:76683625-76683644 None:intergenic 30.0%
TTTGTGAAGATCAATATGGA+TGG + chr8.4:76684016-76684035 MS.gene36628:CDS 30.0%
! ATGTCAATTTTTCTCCCAAT+AGG - chr8.4:76684046-76684065 None:intergenic 30.0%
! GTGGAAATGTTTTTCTTTGT+TGG + chr8.4:76684294-76684313 MS.gene36628:intron 30.0%
!! TGACATAACTTTTTGTTGTG+TGG + chr8.4:76684275-76684294 MS.gene36628:intron 30.0%
!!! GTTTCAATTGCATTTTAGCT+AGG - chr8.4:76684423-76684442 None:intergenic 30.0%
AACTAAAACAGAAATGCTGC+TGG + chr8.4:76683842-76683861 MS.gene36628:intron 35.0%
AAGCAAGAGGAAGAAGATAA+AGG + chr8.4:76684710-76684729 MS.gene36628:CDS 35.0%
AAGTTCGAATATGAATCGTC+TGG + chr8.4:76684187-76684206 MS.gene36628:intron 35.0%
AATATGGATGGAGTTCCTAT+TGG + chr8.4:76684028-76684047 MS.gene36628:CDS 35.0%
ATAACCTTGTCTTGAACCAT+AGG - chr8.4:76683953-76683972 None:intergenic 35.0%
ATATGGATGGAGTTCCTATT+GGG + chr8.4:76684029-76684048 MS.gene36628:CDS 35.0%
ATGATCAACGTTTACCTTCA+AGG - chr8.4:76684129-76684148 None:intergenic 35.0%
CAAGTAACATTCAAAACTCC+TGG + chr8.4:76684384-76684403 MS.gene36628:intron 35.0%
CAATCATAACTACTTCTAGG+TGG + chr8.4:76684584-76684603 MS.gene36628:intron 35.0%
CACACAATAACATAGGGAAA+AGG - chr8.4:76685005-76685024 None:intergenic 35.0%
GAAATTCAGCTTTACCAAAC+AGG + chr8.4:76683517-76683536 MS.gene36628:CDS 35.0%
TGATAAGATACTTACTGCCA+CGG - chr8.4:76684821-76684840 None:intergenic 35.0%
TGGAATTAACAAGAAGCAAG+AGG + chr8.4:76684697-76684716 MS.gene36628:CDS 35.0%
TGTTTGTATCAACAGTGAAG+AGG + chr8.4:76685120-76685139 MS.gene36628:CDS 35.0%
TTCTTCCTGAATGAACGAAT+CGG - chr8.4:76683887-76683906 None:intergenic 35.0%
!! AGCTATGATTTGTTACTGTG+TGG + chr8.4:76685067-76685086 MS.gene36628:intron 35.0%
!! CTAGGTTGACATTTTATACC+AGG - chr8.4:76684405-76684424 None:intergenic 35.0%
!! GAAGAAGATAAAGGCATCAA+AGG + chr8.4:76684719-76684738 MS.gene36628:CDS 35.0%
!!! AGCAGCATTTCTGTTTTAGT+TGG - chr8.4:76683843-76683862 None:intergenic 35.0%
AAGAAGCCACAAGTGTTCTT+TGG + chr8.4:76683248-76683267 MS.gene36628:CDS 40.0%
AAGGAGACAAGATGCTTGTA+GGG + chr8.4:76684789-76684808 MS.gene36628:CDS 40.0%
ATACCAAAACCGTAACGTTG+TGG + chr8.4:76683709-76683728 MS.gene36628:intron 40.0%
CCTATTAGCAACTCTGGTAA+AGG + chr8.4:76683989-76684008 MS.gene36628:CDS 40.0%
CCTTTACCAGAGTTGCTAAT+AGG - chr8.4:76683992-76684011 None:intergenic 40.0%
CGTATCTGCAACCACAATTA+CGG - chr8.4:76683735-76683754 None:intergenic 40.0%
CTATTTAGAGGTCTCCTTGA+AGG + chr8.4:76684112-76684131 MS.gene36628:CDS 40.0%
CTTCAAGGAGACCTCTAAAT+AGG - chr8.4:76684114-76684133 None:intergenic 40.0%
GAAGAATCATCACTCACTCT+TGG + chr8.4:76683363-76683382 MS.gene36628:CDS 40.0%
GCTGAATTTCTTGCAGAAGA+AGG - chr8.4:76683507-76683526 None:intergenic 40.0%
TACCAAACAGGTCTCAGAAA+AGG + chr8.4:76683529-76683548 MS.gene36628:CDS 40.0%
TCTTGCAAGTTTGTGCAACA+AGG - chr8.4:76683462-76683481 None:intergenic 40.0%
TGTTGCACAAACTTGCAAGA+TGG + chr8.4:76683462-76683481 MS.gene36628:CDS 40.0%
TTCAGGAAGAACATTGCAAG+TGG + chr8.4:76683896-76683915 MS.gene36628:CDS 40.0%
TTGACAAACTCTTCTTCACC+AGG - chr8.4:76683306-76683325 None:intergenic 40.0%
! AAAGGATCATTGACTGGAAG+TGG + chr8.4:76684737-76684756 MS.gene36628:CDS 40.0%
!! GCTGTTGATGACCTATTTAG+AGG + chr8.4:76684100-76684119 MS.gene36628:CDS 40.0%
!!! TACCTTTTCTGAGACCTGTT+TGG - chr8.4:76683534-76683553 None:intergenic 40.0%
AAGCCACAAGTGTTCTTTGG+AGG + chr8.4:76683251-76683270 MS.gene36628:CDS 45.0%
ACAAACTCTTCTTCACCAGG+TGG - chr8.4:76683303-76683322 None:intergenic 45.0%
AGCAGGAAGATCAGAACTCT+TGG - chr8.4:76685156-76685175 None:intergenic 45.0%
AGGAAGTTGGAGCTTAGACT+TGG + chr8.4:76683276-76683295 MS.gene36628:CDS 45.0%
AGGAGACAAGATGCTTGTAG+GGG + chr8.4:76684790-76684809 MS.gene36628:CDS 45.0%
CAAGAACAACATTCACTCGG+CGG - chr8.4:76683622-76683641 None:intergenic 45.0%
CAATTACGGCCACAACGTTA+CGG - chr8.4:76683721-76683740 None:intergenic 45.0%
GAAGGAGACAAGATGCTTGT+AGG + chr8.4:76684788-76684807 MS.gene36628:CDS 45.0%
GGCATCAAAGGATCATTGAC+TGG + chr8.4:76684731-76684750 MS.gene36628:CDS 45.0%
TAACGTTGTGGCCGTAATTG+TGG + chr8.4:76683721-76683740 MS.gene36628:intron 45.0%
TCTCCTCCAAAGAACACTTG+TGG - chr8.4:76683257-76683276 None:intergenic 45.0%
TTCCTGAATGAACGAATCGG+AGG - chr8.4:76683884-76683903 None:intergenic 45.0%
! ACAAGTGTTCTTTGGAGGAG+AGG + chr8.4:76683256-76683275 MS.gene36628:CDS 45.0%
! TTCTTTGGAGGAGAGGAAGT+TGG + chr8.4:76683263-76683282 MS.gene36628:CDS 45.0%
AATGCTGCTGGTCCAGTAGT+AGG + chr8.4:76683854-76683873 MS.gene36628:CDS 50.0%
CCTTGTCTTGAACCATAGGC+CGG - chr8.4:76683949-76683968 None:intergenic 50.0%
CTTGTCTTGAACCATAGGCC+GGG - chr8.4:76683948-76683967 None:intergenic 50.0%
ATCGGAGGCCAACCTACTAC+TGG - chr8.4:76683869-76683888 None:intergenic 55.0%
CCGGCCTATGGTTCAAGACA+AGG + chr8.4:76683946-76683965 MS.gene36628:CDS 55.0%
CTGCTGGTCCAGTAGTAGGT+TGG + chr8.4:76683858-76683877 MS.gene36628:CDS 55.0%
! CGGCCACAACGTTACGGTTT+TGG - chr8.4:76683715-76683734 None:intergenic 55.0%
! GAGCTTAGACTTGGTCCACC+TGG + chr8.4:76683285-76683304 MS.gene36628:CDS 55.0%
! GGCCTCCGATTCGTTCATTC+AGG + chr8.4:76683879-76683898 MS.gene36628:CDS 55.0%
ACCATAGGCCGGGACTCAGT+AGG - chr8.4:76683938-76683957 None:intergenic 60.0%
ATAGGCCGGGACTCAGTAGG+CGG - chr8.4:76683935-76683954 None:intergenic 60.0%
CTAAGCCGCCTACTGAGTCC+CGG + chr8.4:76683927-76683946 MS.gene36628:CDS 60.0%
GCCTACTGAGTCCCGGCCTA+TGG + chr8.4:76683934-76683953 MS.gene36628:CDS 65.0%
TGCTTGTAGGGGACGTGCCG+TGG + chr8.4:76684801-76684820 MS.gene36628:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 76683240 76685202 76683240 ID=MS.gene36628
chr8.4 mRNA 76683240 76685202 76683240 ID=MS.gene36628.t1;Parent=MS.gene36628
chr8.4 exon 76683240 76683550 76683240 ID=MS.gene36628.t1.exon1;Parent=MS.gene36628.t1
chr8.4 CDS 76683240 76683550 76683240 ID=cds.MS.gene36628.t1;Parent=MS.gene36628.t1
chr8.4 exon 76683853 76684133 76683853 ID=MS.gene36628.t1.exon2;Parent=MS.gene36628.t1
chr8.4 CDS 76683853 76684133 76683853 ID=cds.MS.gene36628.t1;Parent=MS.gene36628.t1
chr8.4 exon 76684681 76684825 76684681 ID=MS.gene36628.t1.exon3;Parent=MS.gene36628.t1
chr8.4 CDS 76684681 76684825 76684681 ID=cds.MS.gene36628.t1;Parent=MS.gene36628.t1
chr8.4 exon 76685118 76685202 76685118 ID=MS.gene36628.t1.exon4;Parent=MS.gene36628.t1
chr8.4 CDS 76685118 76685202 76685118 ID=cds.MS.gene36628.t1;Parent=MS.gene36628.t1
Gene Sequence

>MS.gene36628

ATGTGGCAAAGAAGCCACAAGTGTTCTTTGGAGGAGAGGAAGTTGGAGCTTAGACTTGGTCCACCTGGTGAAGAAGAGTTTGTCAATGAAAAAAGCTTGAAGAATGTCAAAAAAGAAAGAGATGAAGAATCATCACTCACTCTTGGTTATGCTAAAGATTCATCATTTCTTAAGCTCTCATCAATGCAAGTGATGAAAAAAGATGCATCACAATCACAACCTTGTTGCACAAACTTGCAAGATGGTGAGAAAAATGCATTCTCTCCTTCTTCTGCAAGAAATTCAGCTTTACCAAACAGGTCTCAGAAAAGGTACTCCTTTGCTTTTCTCTCTTATATCTATGTTTGTGGTTTTAAATTGCAGTCTGCAACTGCATCTACCGCCGAGTGAATGTTGTTCTTGATATATTATAAAGATGTAAATTGTTGTTGGTTTCGATCATGTCGTAATTCTTGATATTACAGTCAAGATACCAAAACCGTAACGTTGTGGCCGTAATTGTGGTTGCAGATACGAATTTTGACTATTTGTCTTCTTTTATATAGTGATGATGATTAGTTTTTCTGTTTATTTTCATGTCTAACTTTATATTATTATGATCCAACTAAAACAGAAATGCTGCTGGTCCAGTAGTAGGTTGGCCTCCGATTCGTTCATTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGCCGCCTACTGAGTCCCGGCCTATGGTTCAAGACAAGGTTATTGTTGATAGTAAAAAACCTATTAGCAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCTATTGGGAGAAAAATTGACATCAATGCTTATGATGGCTATGAAAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTTGAAGGTAAACGTTGATCATCGATAAAATGAGATCAGAATGATTGTGTTTTAACTTCAAAGTTCGAATATGAATCGTCTGGCCTTTTAATGCAATAATTGTGTCTTGTGTAGTCTATTTAATTACAATTGTTTATTCATTTGTTCTTGACATAACTTTTTGTTGTGTGGAAATGTTTTTCTTTGTTGGGAAATAAAAGCTAGAATAAGTTAGACATGTTTTCTCCTTTTGTTACCTACATCTTTTGACTAAATAGCAAGTAACATTCAAAACTCCTGGTATAAAATGTCAACCTAGCTAAAATGCAATTGAAACAACTACATTAGCTTATAGTCAATCTATTTTCACCAAACAAATATTTTAAGGACAATGATATACATTGTTATAGTAAACGTCTGTTGCACTGTCAATCAATCATTGCCGTTAGATCATTAAAAATATACGACTTCATTATTTCAATCATAACTACTTCTAGGTGGCCTTTAAGTGAATTTTGTTTTAATAATTCTTTCTAAGCTCACATAAAGATTGTGATTATGAAAATTTGTTGCAGAGATAAATTTATCTCATGGAATTAACAAGAAGCAAGAGGAAGAAGATAAAGGCATCAAAGGATCATTGACTGGAAGTGGAGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCAGTAAGTATCTTATCAATGTGAATCTGATCCATTTTTCATCTTATTCTATTCAATATTTATATACTTGTTTATATTCTTTGAATAGTGTTTCAATGCCAATGCATAATTAACTTTGTTTTTTAAAACTATAGTTTCTTGTGCTTAACAATTACTACTATATATAACTCTTGCAATTGCCTTTTCCCTATGTTATTGTGTGAGTTTTGTTTATTTTTTCAATGATTTAGTTATGATAATTGGAAGCTATGATTTGTTACTGTGTGGTTAATTTTTTAATATGTTTGTTTGGCAGCATGTTTGTATCAACAGTGAAGAGGCTGCGTGTGTCCAAGAGTTCTGATCTTCCTGCTTTTAACAGTGAGTTTTTAGTGTTTTAA
Protein sequence

>MS.gene36628.t1

MWQRSHKCSLEERKLELRLGPPGEEEFVNEKSLKNVKKERDEESSLTLGYAKDSSFLKLSSMQVMKKDASQSQPCCTNLQDGEKNAFSPSSARNSALPNRSQKRNAAGPVVGWPPIRSFRKNIASGSSSKPPTESRPMVQDKVIVDSKKPISNSGKGLFVKINMDGVPIGRKIDINAYDGYEKLSSAVDDLFRGLLEEINLSHGINKKQEEEDKGIKGSLTGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNSEFLVF