AlfalfaGEDB | MS.gene060522

M. sativa cultivar XinJiangDaYe / MS.gene060522

KEGG: K01537
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0016021 GO:0031224 GO:0036094 GO:0097159 GO:0110165 GO:1901265 GO:1901363
PFAM: PF00122.23 PF00689.24 PF00690.29 PF00702.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060522.t1	XP_013444583.1	98.8	1053	13	0	1	1053	1	1053	0.00E+00	2060.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060522.t1	Q42883	80.4	1050	201	3	7	1053	1	1048	0.0e+00	1692.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060522.t1	A0A072TP30	98.8	1053	13	0	1	1053	1	1053	0.0e+00	2060.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene060522	0.815809	7.64E-52	-1.69E-46
MS.gene04919	MS.gene060522	0.804264	2.35E-49	-1.69E-46
MS.gene04920	MS.gene060522	0.826133	3.21E-54	-1.69E-46
MS.gene049283	MS.gene060522	0.814296	1.66E-51	-1.69E-46
MS.gene049499	MS.gene060522	0.825537	4.44E-54	-1.69E-46
MS.gene049983	MS.gene060522	0.810715	1.00E-50	-1.69E-46
MS.gene050213	MS.gene060522	0.814481	1.51E-51	-1.69E-46
MS.gene050238	MS.gene060522	0.808416	3.13E-50	-1.69E-46
MS.gene050258	MS.gene060522	0.812103	5.02E-51	-1.69E-46
MS.gene050379	MS.gene060522	0.825113	5.59E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene015066	MS.gene060522	PPI
MS.gene015253	MS.gene060522	PPI
MS.gene018527	MS.gene060522	PPI
MS.gene034729	MS.gene060522	PPI
MS.gene054893	MS.gene060522	PPI
MS.gene060522	MS.gene93286	PPI
MS.gene060522	MS.gene030826	PPI
MS.gene060522	MS.gene09595	PPI
MS.gene060522	MS.gene011720	PPI
MS.gene060522	MS.gene061924	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060522.t1	MTR_8g027160	98.765	1053	13	0	1	1053	1	1053	0.0	2145
MS.gene060522.t1	MTR_8g027160	98.963	868	9	0	1	868	1	868	0.0	1768
MS.gene060522.t1	MTR_8g027160	98.675	755	10	0	1	755	1	755	0.0	1543
MS.gene060522.t1	MTR_8g027160	98.808	755	9	0	1	755	1	755	0.0	1541
MS.gene060522.t1	MTR_7g100110	65.537	1062	329	11	12	1051	24	1070	0.0	1389
MS.gene060522.t1	MTR_3g103270	46.132	1034	479	20	21	1043	42	1008	0.0	808
MS.gene060522.t1	MTR_5g015590	29.767	1028	561	31	15	1026	116	998	3.80e-106	356
MS.gene060522.t1	MTR_5g015590	31.910	890	491	26	15	888	116	906	2.41e-105	352
MS.gene060522.t1	MTR_4g096990	31.685	890	483	28	19	888	120	904	5.08e-103	347
MS.gene060522.t1	MTR_6g016470	31.142	867	488	22	25	868	107	887	1.27e-99	338

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060522.t1	AT4G00900	78.687	1051	214	6	8	1051	3	1050	0.0	1704
MS.gene060522.t1	AT4G00900	78.687	1051	214	6	8	1051	3	1050	0.0	1704
MS.gene060522.t1	AT1G07670	66.087	1035	331	6	12	1042	24	1042	0.0	1379
MS.gene060522.t1	AT1G07670	66.087	1035	331	6	12	1042	24	1042	0.0	1379
MS.gene060522.t1	AT1G07810	65.514	1041	339	6	6	1042	18	1042	0.0	1372
MS.gene060522.t1	AT1G10130	46.641	1042	475	21	14	1043	4	976	0.0	822
MS.gene060522.t1	AT1G27770	31.925	852	473	22	24	859	63	823	6.16e-103	346
MS.gene060522.t1	AT1G27770	31.925	852	473	22	24	859	126	886	3.89e-102	345
MS.gene060522.t1	AT1G27770	31.925	852	473	22	24	859	126	886	3.89e-102	345
MS.gene060522.t1	AT4G37640	31.007	874	485	22	33	888	133	906	2.37e-101	342

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Find 236 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCATGGATTCCTCCA+AGG	0.631041	8.1:-75180315	None:intergenic
AAACAAGTTGTGATAACCGC+CGG	0.593990	8.1:-75177503	None:intergenic
AAACCAAGAGCTGTTGCAGG+TGG	0.630026	8.1:-75179658	None:intergenic
AAAGAAAATATGGTATTTGC+AGG	0.384129	8.1:+75177152	MS.gene060522:CDS
AAAGAAAATTGAATGTTTGT+AGG	0.353704	8.1:-75177413	None:intergenic
AAAGAACCCAGGCACTTATA+AGG	0.295022	8.1:-75179735	None:intergenic
AAAGGGTTTGAGTTCTAATG+AGG	0.503163	8.1:+75176608	MS.gene060522:CDS
AAATTATTGTTGCGAAATGG+AGG	0.586368	8.1:+75179047	MS.gene060522:CDS
AACAGCACAAATTTCTGCCA+TGG	0.606013	8.1:-75177789	None:intergenic
AACAGCTGAGGCTATTTGTA+AGG	0.482291	8.1:+75178935	MS.gene060522:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTATTGTTGCGAAATGG+AGG	+	chr8.1:75179047-75179066	MS.gene060522:CDS	30.0%
AAGAAGAAGTTAGACGAATT+TGG	+	chr8.1:75177296-75177315	MS.gene060522:CDS	30.0%
ACAAACTATTCCAATAGAAG+TGG	-	chr8.1:75177333-75177352	None:intergenic	30.0%
ACAACTTATGATCCAAAAGA+TGG	+	chr8.1:75177719-75177738	MS.gene060522:CDS	30.0%
ACATTGAAATTTGACCATGA+AGG	-	chr8.1:75180123-75180142	None:intergenic	30.0%
AGAAATTGTGAGACTACTAA+AGG	+	chr8.1:75179106-75179125	MS.gene060522:CDS	30.0%
ATCATCCAAGAAAATAGGAT+TGG	-	chr8.1:75177117-75177136	None:intergenic	30.0%
ATCTGATGGTTATGATTGAT+TGG	-	chr8.1:75179863-75179882	None:intergenic	30.0%
ATTTCATCAATTAACTGTGC+AGG	+	chr8.1:75179794-75179813	MS.gene060522:intron	30.0%
CAAACTATTCTCTTCTGATA+GGG	-	chr8.1:75180283-75180302	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	75176516	75180539	75176516	ID=MS.gene060522
chr8.1	mRNA	75176516	75180539	75176516	ID=MS.gene060522.t1;Parent=MS.gene060522
chr8.1	exon	75176516	75177992	75176516	ID=MS.gene060522.t1.exon1;Parent=MS.gene060522.t1
chr8.1	CDS	75176516	75177992	75176516	ID=cds.MS.gene060522.t1;Parent=MS.gene060522.t1
chr8.1	exon	75178092	75178213	75178092	ID=MS.gene060522.t1.exon2;Parent=MS.gene060522.t1
chr8.1	CDS	75178092	75178213	75178092	ID=cds.MS.gene060522.t1;Parent=MS.gene060522.t1
chr8.1	exon	75178475	75178753	75178475	ID=MS.gene060522.t1.exon3;Parent=MS.gene060522.t1
chr8.1	CDS	75178475	75178753	75178475	ID=cds.MS.gene060522.t1;Parent=MS.gene060522.t1
chr8.1	exon	75178846	75179229	75178846	ID=MS.gene060522.t1.exon4;Parent=MS.gene060522.t1
chr8.1	CDS	75178846	75179229	75178846	ID=cds.MS.gene060522.t1;Parent=MS.gene060522.t1
chr8.1	exon	75179345	75179454	75179345	ID=MS.gene060522.t1.exon5;Parent=MS.gene060522.t1
chr8.1	CDS	75179345	75179454	75179345	ID=cds.MS.gene060522.t1;Parent=MS.gene060522.t1
chr8.1	exon	75179540	75179768	75179540	ID=MS.gene060522.t1.exon6;Parent=MS.gene060522.t1
chr8.1	CDS	75179540	75179768	75179540	ID=cds.MS.gene060522.t1;Parent=MS.gene060522.t1
chr8.1	exon	75179979	75180539	75179979	ID=MS.gene060522.t1.exon7;Parent=MS.gene060522.t1
chr8.1	CDS	75179979	75180539	75179979	ID=cds.MS.gene060522.t1;Parent=MS.gene060522.t1

Gene Sequence

>MS.gene060522

ATGCACATGAAAGTTCCAATGGAGGAAAAGCCATTCCCTGCATGGTCATGGTCAGTTGATGAGTGCTTGGAAGAGTATGGTGTGAAACTGGAAAAGGGTTTGAGTTCTAATGAGGTTCAGAAGCGGCGCGAGAAATACGGTTGGAATGAGCTAGCAAAAGAGAAGGGAAAGCCGATATGGAAACTAGTGTTAGAACAATTTGATGACATGTTGGTGAAGATACTTTTGGCAGCAGCCTTTATATCATTTCTTTTGGCATACTTTGAAGGAAGTGAATCTGGATTCGAGGCTTATGTAGAGCCTCTCGTGATCATTTTGATCTTGGTACTTAACGCAATTGTCGGAGTTTGGCAAGAGAACAATGCTGAAAAGGCTCTTGAAGCTCTTAAAGAGTTGCAATGTGAATCTATAAAAGTGTTGAGGGATGGACATTTTGTTCCTGATTTGCCTGCGCGGGAGCTTGTTCCAGGCGACATTGTTGAGTTGCGCGTTGGAGATAAAGTTCCGGCTGACATGAGAGTTGCAGCTTTGAAAACATCAACACTGAGATTGGAACAAAGCTCATTAACCGGAGAAGCAATGCCGGTTCTCAAAGGAACCAATCCTATTTTCTTGGATGATTGTGAATTGCAGGCCAAAGAAAATATGGTATTTGCAGGTACAACTGTTGTCAATGGAAGCTGTCTTTGCATTGTTATTACTACAGCAATGAACACCGAAATCGGAAAGATACAGAAGCAAATACATGAGGCTTCGTTGGAGGAAAGCGATACTCCTTTGAAGAAGAAGTTAGACGAATTTGGTGGCAGGCTTACCACTTCTATTGGAATAGTTTGTCTTGTTGTGTGGATTATAAACTACAAAAATTTCATTTCTTGGGATGTTGTTGATGGATGGCCTACAAACATTCAATTTTCTTTTCAGAAATGCACTTACTATTTCAAAATTGCTGTTGCTCTTGCTGTGGCTGCAATTCCAGAAGGTCTTCCGGCGGTTATCACAACTTGTTTAGCACTTGGTACAAGGAAAATGGCACAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTTGAAACTTTGGGATGTACCACTGTGATTTGTTCAGATAAAACCGGTACACTGACGACAAATCAAATGTCTGCGACGGAGTTCTTTACTTTGGGAGGGAAAACAACTGCTTGTAGAGTCATTAGAGTTGAAGGGACAACTTATGATCCAAAAGATGGAGGCATTGTTGATTGGACTTGTTATAACATGGATGCTAACTTGTTAGCCATGGCAGAAATTTGTGCTGTTTGTAATGATGCCGGTGTTTATTTTGACGGTCGCTTATTTCGAGCCACTGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTTGAAAAGATGGGGTTTCCAGATATCAAATCAAGGAACAAAACTCACGATGCGTTAGTTGCGACAAACAACATGGTGGATTGCAACACTTTGAAGCTAGGTTGGTAAATGGACTAATTTATGAAAGATTAGATGAGTTAGTTGTCAAAATACAACTGTACTAAGAATAACAAAGTACTATTTGATTTTTATTGTGCAGGTTGTTGTGAGTGGTGGAATAGAAGATCCAAAAGGGTAGCTACATTGGAGTTTGACCGCGTTAGGAAGTCGATGAGTGTTATTGTTCGCGAACCAGATGGACAAAATCGGCTTCTTGTCAAGGTGATTTGATTTGATGCTTTATCACTAGATTGAAGTTGATCATAAAATATATTTTATCAGAAAATATCTATTCAAATTGAATCTTATTCAAATCATATCGAATTAGTACATCACCATTACCAAAATAATATTCTGCTATGCTGCATATAGCTTAAGATATATGCATCAGTACAAGTTTCCAAATATAAAATATGACCTCTTTCTATGCCTGATTTCATTCTAGTGCTACATTTTCAAGTTCTAAAAGTAAGTGAATCACAGGGTGCTGTTGAGAGTTTATTGGAGCGAAGCTCGTATGTGCAACTTGCCGATGGATCTCTAGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCAAAGACTCCATGAGATGAGTTCGAAGGGATTACGTTGCTTGGGATTGGCATGTAAAGACGAGTTGGGAGAATTTTCAGACTATTATGCAGACACTCATCCTGCACACAAGAAATTGCTTGATCCAACATACTATTCATCCATTGAAAGTGATTTAGTTTTTGTTGGTGTTGTTGGTTTAAGAGTAAGTTTTCATTATACCTTTATCAATCTTCTCTTGTTGCAGGTTTTAGAGGATATTAATTAATTAATTTAGTTTATAATTGAATTGATTAGGACCCTCCTAGAGAGGAAGTTCATAAAGCAATTGAAGATTGTAAGCAAGCTGGTATTAGAGTTATGGTAATAACTGGAGATAATAAGTCAACAGCTGAGGCTATTTGTAAGGAAATCAACCTGTTCTCTAGAGATGAGGATCTTACAGGTCAAAGTTTGACAGGGAAAGAATTCATGTCTCTTTCTCATTCAGAACAAGTTAAATTATTGTTGCGAAATGGAGGCAAGGTTTTCTCCCGAGCCGAGCCTAGACACAAGCAAGAAATTGTGAGACTACTAAAGGAAATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCTGATATAGGAATTGCTATGGGAATAACCGGAACTGAGGTAACCTGACTTTTCCTATACTGCAGTCGCGGTTATGCAGTGAACCTATATATTGTGGTATTAAAGGTTAAAATAATATTTCACCATCTTACCATAATATTGCTAAATACCACAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATTGTTTCAGCTATCGCTGAGGGTCGCGCTATTTATAATAACATGAAAGCATTTATAAGGTATGCCTCTTAGTTTCTTTTTCCTTCAACATTTTACATTTGGTTGATCTATACAAGTCATTCAAATTCACTCAATCTTCTTTAGGTACATGATATCGTCGAATGTTGGAGAAGTTATATCCATATTCTTGACAGCTGCTTTGGGGATCCCAGAATGTATGATACCAGTACAACTTCTGTGGGTGAATTTGGTCACTGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGAAAAAGTGACGATGCCCTTATAAGTGCCTGGGTTCTTTTCCGTTACCTAGTAAGTTTAGCTCAAAATCTCTTTAATTTCATCAATTAACTGTGCAGGATTTAATTCATATATCCTGTCAGTGTAAAGATTTTTTACATTGCCAATCAATCATAACCATCAGATCACTTTCTGATTTGCTGACAAAGTATCAGAATAAAACTCTAACTTTGCATGTCTATACCAAAGTCTTTCATAAACTCATTAAGTCTTTCATGGCAGGTAATTGGTTCCTATGTGGGAATTGCAACAGTTGGCGTTTTTGTATTGTGGTACACACAGGCATCTTTTCTTGGCATCAATCTTGTTAGTGATGGACACACAGTTATAGAATTGACACAGCTTCTCAACTGGAGGGAATGTCCTTCATGGTCAAATTTCAATGTTTCTTCATTTGACGCTGGTGGCGGTCGTGTGATCGCGTTTTCAAATCCTTGCGACTATTTTTCAGTTGGAAAAGTTAAGGCAATGACTCTTTCTCTCTCTGTCTTGGTGGCAATTGAAATGTTCAATTCTTTGAATGCCCTATCAGAAGAGAATAGTTTGAGGACATTACCACCTTGGAGGAATCCATGGCTTTTGGTAGCCATGACAATATCTTTTGCTCTACATTGTCTAATACTCTACATTCCTTTCCTCTCTGAGGTGTTTGGTGTTGCTCCACTAAGCTTGAAGGAGTGGTTTTTGGTGATTCTGATATCAGCACCTGTTATTCTTATTGATGAGATTCTAAAATTAGTGGTGAGGAGTCAAAGGAGGAAGACAAAAGAGAAAGAAGCATGA

Protein sequence

>MS.gene060522.t1

MHMKVPMEEKPFPAWSWSVDECLEEYGVKLEKGLSSNEVQKRREKYGWNELAKEKGKPIWKLVLEQFDDMLVKILLAAAFISFLLAYFEGSESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESIKVLRDGHFVPDLPARELVPGDIVELRVGDKVPADMRVAALKTSTLRLEQSSLTGEAMPVLKGTNPIFLDDCELQAKENMVFAGTTVVNGSCLCIVITTAMNTEIGKIQKQIHEASLEESDTPLKKKLDEFGGRLTTSIGIVCLVVWIINYKNFISWDVVDGWPTNIQFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSATEFFTLGGKTTACRVIRVEGTTYDPKDGGIVDWTCYNMDANLLAMAEICAVCNDAGVYFDGRLFRATGLPTEAALKVLVEKMGFPDIKSRNKTHDALVATNNMVDCNTLKLGCCEWWNRRSKRVATLEFDRVRKSMSVIVREPDGQNRLLVKGAVESLLERSSYVQLADGSLVPIDDQCRELLLQRLHEMSSKGLRCLGLACKDELGEFSDYYADTHPAHKKLLDPTYYSSIESDLVFVGVVGLRDPPREEVHKAIEDCKQAGIRVMVITGDNKSTAEAICKEINLFSRDEDLTGQSLTGKEFMSLSHSEQVKLLLRNGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAIAEGRAIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISAWVLFRYLVIGSYVGIATVGVFVLWYTQASFLGINLVSDGHTVIELTQLLNWRECPSWSNFNVSSFDAGGGRVIAFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRTLPPWRNPWLLVAMTISFALHCLILYIPFLSEVFGVAPLSLKEWFLVILISAPVILIDEILKLVVRSQRRKTKEKEA