AlfalfaGEDB | MS.gene36730

M. sativa cultivar XinJiangDaYe / MS.gene36730

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36730.t1	XP_003627062.3	79.8	881	169	6	1	876	5	881	0.00E+00	1285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36730.t1	C0LGD6	50.4	850	392	15	18	852	17	851	4.1e-196	686.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36730.t1	A0A396GD58	79.8	881	169	6	1	876	5	881	0.0e+00	1285.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene069903	MS.gene36730	PPI
MS.gene069905	MS.gene36730	PPI
MS.gene36388	MS.gene36730	PPI
MS.gene36389	MS.gene36730	PPI
MS.gene76570	MS.gene36730	PPI
MS.gene76573	MS.gene36730	PPI
MS.gene85182	MS.gene36730	PPI
MS.gene85183	MS.gene36730	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene36730.t1	MTR_8g014690	79.727	878	169	6	4	876	1	874	1415
MS.gene36730.t1	MTR_8g014700	77.790	878	187	7	1	876	5	876	1394
MS.gene36730.t1	MTR_8g014790	77.299	881	186	11	1	876	1	872	1391
MS.gene36730.t1	MTR_8g014700	75.721	902	187	8	1	876	5	900	1379
MS.gene36730.t1	MTR_8g014760	76.888	874	193	7	4	876	2	867	1365
MS.gene36730.t1	MTR_8g015150	74.432	880	206	10	1	876	1	865	1312
MS.gene36730.t1	MTR_8g014930	74.505	859	208	9	22	876	19	870	1303
MS.gene36730.t1	MTR_8g028110	72.924	879	225	9	4	876	6	877	1264
MS.gene36730.t1	MTR_8g015200	70.991	848	228	9	32	875	10	843	1232
MS.gene36730.t1	MTR_8g014930	70.896	859	200	10	22	876	24	836	1222

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene36730.t1	AT4G29990	47.206	841	421	14	19	844	14	846	755
MS.gene36730.t1	AT1G05700	48.706	850	406	15	18	852	17	851	753
MS.gene36730.t1	AT1G05700	47.153	878	409	15	18	852	17	882	741
MS.gene36730.t1	AT2G19210	44.839	872	451	18	9	860	5	866	732
MS.gene36730.t1	AT1G51800	42.952	901	467	19	10	876	7	894	719
MS.gene36730.t1	AT2G19230	45.799	845	424	16	17	844	15	842	715
MS.gene36730.t1	AT2G19230	45.508	846	426	16	17	844	15	843	714
MS.gene36730.t1	AT1G51790	43.643	873	448	18	18	863	15	870	712
MS.gene36730.t1	AT1G51790	43.643	873	448	18	18	863	15	870	712
MS.gene36730.t1	AT1G51790	42.145	923	442	21	18	863	15	922	702

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Find 164 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATTATTGGAGAAGG+AGG	0.505118	8.2:-78405551	MS.gene36730:CDS
AAAATCCAAGAGAAATCAAA+AGG	0.491798	8.2:+78406114	None:intergenic
AAACAGGTTCACTATCACTG+AGG	0.702118	8.2:-78406382	MS.gene36730:intron
AAACTAAATATCGTAGTATA+TGG	0.336379	8.2:+78407703	None:intergenic
AAACTCAAGTCGCTGTTAAG+CGG	0.587782	8.2:-78405493	MS.gene36730:CDS
AAACTTCAAATATCTTAAAT+TGG	0.281143	8.2:-78404835	MS.gene36730:CDS
AAAGCACTCACATACTTCAA+TGG	0.466225	8.2:-78404108	MS.gene36730:CDS
AAAGCTTTAGTGAGAGCATC+TGG	0.380421	8.2:-78404133	MS.gene36730:CDS
AAAGGGAAATTTGATATGTT+TGG	0.254931	8.2:+78407662	None:intergenic
AAATCTCTATGCATAATAGG+TGG	0.620528	8.2:+78404674	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTATTATTGGAGAAGG+AGG	-	chr8.2:78407144-78407163	MS.gene36730:CDS	30.0%
AAATCTCTATGCATAATAGG+TGG	+	chr8.2:78408024-78408043	None:intergenic	30.0%
AAGAATTAGTATAGCAACAG+TGG	+	chr8.2:78406806-78406825	None:intergenic	30.0%
AAGAGAGAATAACTTCCAAA+TGG	+	chr8.2:78406008-78406027	None:intergenic	30.0%
AAGATGAAACCTTATAGACA+AGG	-	chr8.2:78407730-78407749	MS.gene36730:CDS	30.0%
AATCCTGAAAATTCACACAA+AGG	+	chr8.2:78407976-78407995	None:intergenic	30.0%
AATCTCCAACAACATTTGTT+AGG	-	chr8.2:78407494-78407513	MS.gene36730:intron	30.0%
ACTTACAAAGATGTGATTCT+TGG	+	chr8.2:78405634-78405653	None:intergenic	30.0%
AGATTAATTCTCTTTCTCGA+AGG	-	chr8.2:78405248-78405267	MS.gene36730:CDS	30.0%
AGTAGTAGTAGTAGTAGATT+TGG	+	chr8.2:78405309-78405328	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	78403832	78408885	78403832	ID=MS.gene36730
chr8.2	mRNA	78403832	78408885	78403832	ID=MS.gene36730.t1;Parent=MS.gene36730
chr8.2	exon	78408795	78408885	78408795	ID=MS.gene36730.t1.exon1;Parent=MS.gene36730.t1
chr8.2	CDS	78408795	78408885	78408795	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78408153	78408693	78408153	ID=MS.gene36730.t1.exon2;Parent=MS.gene36730.t1
chr8.2	CDS	78408153	78408693	78408153	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78407566	78408047	78407566	ID=MS.gene36730.t1.exon3;Parent=MS.gene36730.t1
chr8.2	CDS	78407566	78408047	78407566	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78407070	78407208	78407070	ID=MS.gene36730.t1.exon4;Parent=MS.gene36730.t1
chr8.2	CDS	78407070	78407208	78407070	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78406911	78406982	78406911	ID=MS.gene36730.t1.exon5;Parent=MS.gene36730.t1
chr8.2	CDS	78406911	78406982	78406911	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78406569	78406640	78406569	ID=MS.gene36730.t1.exon6;Parent=MS.gene36730.t1
chr8.2	CDS	78406569	78406640	78406569	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78406383	78406463	78406383	ID=MS.gene36730.t1.exon7;Parent=MS.gene36730.t1
chr8.2	CDS	78406383	78406463	78406383	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78406084	78406235	78406084	ID=MS.gene36730.t1.exon8;Parent=MS.gene36730.t1
chr8.2	CDS	78406084	78406235	78406084	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78405448	78405665	78405448	ID=MS.gene36730.t1.exon9;Parent=MS.gene36730.t1
chr8.2	CDS	78405448	78405665	78405448	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78405202	78405328	78405202	ID=MS.gene36730.t1.exon10;Parent=MS.gene36730.t1
chr8.2	CDS	78405202	78405328	78405202	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78404798	78404860	78404798	ID=MS.gene36730.t1.exon11;Parent=MS.gene36730.t1
chr8.2	CDS	78404798	78404860	78404798	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78404539	78404725	78404539	ID=MS.gene36730.t1.exon12;Parent=MS.gene36730.t1
chr8.2	CDS	78404539	78404725	78404539	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1
chr8.2	exon	78403832	78404237	78403832	ID=MS.gene36730.t1.exon13;Parent=MS.gene36730.t1
chr8.2	CDS	78403832	78404237	78403832	ID=cds.MS.gene36730.t1;Parent=MS.gene36730.t1

Gene Sequence

>MS.gene36730

ATGATAGGAATGTTACTGCCTTTGCATTTTCTTTCAGTATTGTTTGGTTTCCTTACTATTTTGGTTTTAGTACAAGCTCAAGATCAATCAGGTTTGTCTATGAATTTGTCTATAGCTGCTTTATATGTCACATATTTGTTACAAATAATTATTCTAGTTGAAGTTATCTAAATATGTTCCTACATACCTCAGGATTCATTAGCATAGATTGTGGCCTACCAGAACATTCGAACTATTCTCAACCGGACACAGGCATAAATTACATATCAGATGCAGAATTCATAGATACAGGTGTAAGTAAGAGTATAGCACCTACACAGGATGTTATTAAACAGCAACTAAACTATTTAAGGAGCTTTCCAAATGGAGTGAGAAATTGTTACAGAATAAATGTAACAAGTGATACTAAATATTTAATCAGAGTTTCTTTCTATTATGGTAACTATGATAATCTAAACAAGCCACCGCAATTTGATGTTCATTTTGGACCTAATCGTTGGGTTACAGTGAAGTTCACCAATGTATCACGCATCGTATCCAGTGAGATCATTTACACTCCATCACTAGATTACATACAACCATGTCTTGTTAATACCGGAAAAGGGACTCCATTCATTTCAGTAATAGAATTGAGGACTTTGAACCGTGACTCTTATATCATAGACTCAGCTAAATCAGCAGTAGTACTCTTCATACGATATGATATAGGTTCCATCGCAAACTTCGAATACAGGTAAGATGTACTAACTAGCAGCACGTTAATTAGCTAACTTTAATATAAATAAATAACATAAAAGTCAATTACTGATAATTTTTGTTGGTCACATACAAACAACAGGTACAAAGATGATGTTTATGACCGCATCTGGTTTCCTTTTCAATCGAGTTTTAAACGATTAAACACCTCACTTACCAATGATGATCGATTAGTTCAGAGTATGTATGAACTACCAGCAGTTGTGATGAACACTGCTGTTACATCAGTAAATCACGATACACCTTTAAAATTTGCATGGGCAGCAAATAATGTAAATGATCAATACTACCTCTACATGCACTTTAACGAGGTTGAAGAGCTGGCAGCAAATGAAACTAGAGTATTCAATATCTCAGTGAATGACAAGTTCTGGTATGGACCTGTGGCGCCTATATACCGGACACCATATACTACGATATTTAGTTTAACACCTTTGCCTAGCGCCCAAACATATCAAATTTCCCTTTCTAAGACAGAGAATTCATCCCTTCCACCCATCCTCAATGCTATCGAGGTTTATCAAGTAAAAAACTTCTCACAATCAGAAACTGAACAGGAAGATGGTAAGCTAGCTCCACACAAATACTACCAACTATTTCTAAATATAAGGTCCTCTTGATATATTTTCTATTGCGTTGATTATTCCTTGACAAAAACATAGATTAATTCTCTTTCTCGAAGGGTAAACTTGCAAAAAAAAAAAAAAACTAGAAGTCCCCAAATCTACTACTACTACTACTGCTACTGCTACTGCTACCACTACTACTACAGCTACGGCTACCAATTAACAACTTTTTTAATTCACGTGATTTAGTCACTAGGGTCTTATATTTATGGAAGGAGACAGTATATAGTAAACGATTTACGAAATGTCTTGAAATCCTTTTGAACTGTTTTTTCTTTTTCATACCAAATACTAGTTGATACTATCATGAACATCAAGAACACTTATGGGGTGGCTAGAAATTGGCAAGGAGATCCATGTGGTCCTGTGAAGTATATGTGGGAAGGCCTAAACTGTAGTATTGATGGCAATAACATCCCAAGAATCACATCTTTGTAAGTTTACAATTCCTTAAATAAACTATATGCATAAATTCAAAAACTTCAATTATCCTCTGAAGTATTATTTGGAAATGCAACCAGGAATTTGGCTTCAAGTGGATTGACAGGGGAGATACTATCTTCCATATCAAAGCTCACTATGTTAGAGTACTTGTGAGTTCATATTCTCATTTGATTAAATAAACAGTATGTTTGGATGAAGGATTTTGGAACGGAGGGAAGATCATATTTTTCTTTTCTAAAATGTTATATGATCATCTATCATGTTATTACTTCATTTATTTAAAATAACAAATATATATCAAAATATAGCTTAAACCTCATATGGTTAAATGATAAAAGAAATCCACTCCATTTGGAAGTTATTCTCTCTTTATTGGAGATTAAAATTTGTAACATGGCATTTGCATTGTTTTATTTCAGGGATTTATCAAATAATAGCTTAAATGGTCCTATACCCGATTTTCTGATGCAACTGCGGTCACTAAAAGTCTTGTAAGTCTCATATCGATTTTATAGGGGCAGAACAATCTTACAGGGTTAGTTCCAAGTCTTGTGTATAAGATAAACAAGTCATATTTATTTGTCCTTTGATGGCAGAAACGTGGAGAAGAACAATCTTACAGGGTTAGCTCCAAGTGGACTCCTTGAGAGATCAAAAACAGGTTCACTATCACTGAGGTATGGCTCATACTCAAAGCTATATCAATTTATATTATAATCAAGAAAAAGATGAATTTTCAATGAAGCTTTATTTTCTTCCTAATATCAACATTGTTTCACTTATGATATGATAATTAATATCTAAGCACCTTTGACTTTTTTCAGTGTGGATGATGATAACCTTGGTCTTTGTACGACGAAATCTTGCAAAAAGAAGAACATTGCTGTACCACTTGTTGCATCGTTTTCTGCATTAGTTGTAATCCTTTTGATTTCTCTTGGATTTTGGCTATTCAGAAGACAAAAAAGACAAAAAGGTACTTCTCAGAGGAGTAGTGTATTAATCCATTGGTTTGAATGCATACCTTATAGGTTGTATTAATCACACCAAACACACCAAAAGTGTTTATTTATGAAATCAGTTTTTGATATATTGTATTGCGAATTGCAGTGATGCCATATTGCGTCCACATCCGCAATTTAAATCCACTGTTGCTATACTAATTCTTCATGTTTCATGTCATATAAACGAATTTTATATTTTGTCATTATAGAGAGTATTTATTTATGAAATCATATTTTTCTCATAACATGAATTGGAGTCGACTCTCCATAAAACTTTAGCTATATAGTATTTTATTCTTCTGTCATCTAGTGTAAATCTGATATTGCTTTTCTGCCACATTTTTCACACATCCTTGCATTTTCATTCAATTTTATTTATCACAGCTGTAGTTACGCCTTCAAATTCTAAGAAAAGGAGTTCAATGAAATCAAAACATCAAAAATTCAGTTACACTGAAATTGTCAATATTACCGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCACTCTACAAGACCAAACTCAAGTCGCTGTTAAGCGGCTTTCACCATCACCGATGCAAGGTTATAATGAATTTCAATCAGAGGTTAGACACTGCATTGAAGTTAAAAAACAATATATTTAATTTTTATTTAAGTAATAAATAGATTGCTGCATTATTTTCACAGTTAACTTTGGTAGAGATAATATTAACTCAAAATGCAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTGGTCTCCCTCCTTGGATACTGTGATGAAACTGAAATCAAAGCATTGATTTATGAATACATGGCCAATGGAAATCTCCAACAACATTTGTTAGGTAATTTCTATTTTATCCGCAATGTCAACATCCATAATAGATTTACTACTTCCAGTTTATGTACATTTTAAAGATTGACATGCAAAGAATATTTTTTCATCAATTAAATCGATCAAACATTAGCAGAGGTAGAATACAAAAATTTATATTATTAGGATAACAAGGATTGCATTAAAAATTTTGGGGAAGGAGAAATTATCAAGCTCTTACCACTAAGATGAAACCTTATAGACAAGGATTATGAATAAGGCAGGGAGAAGGGCAAGAGAAATTAATTTTTCCTATGCTTTCGTTTTAAATGCTTGTTAAGAATTTCAAGACTAATGCTTGTGTGCATGCAGTGGAAACTTCAAATATCTTAAATTGGAACGAGAGGCTTAACATTGCAGTTGACGCAGCACATGGTAATGTATTGTTTGCGGCAACATAATTCTTGCATCGTGCACCCTTACATTGCCCTTTGTGTGAATTTTCAGGATTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAGCCTTCTAACATACTACTAGATGAAAACTTGCATGCAAAGATTTCAGATTTTGGTCTAAGTAGAGCTTTTGGTAACGTTGATGATACTCATGTATCCACACGCCCTGCTGGTACATTTGGTTACATTGATCCGTAAGTGTGATATAAAAAATCAAATTGGATTGACCAAATTTTATTATTTTTTGTAGCATTTAGTTCACATAGACATCCATTTCAAGTAGAGGATTTCATGACTTTGAAACAAGTAGCAAAGTTACATGATATATTGTGTGCAAAAAGTTAGATTGCTATATTAATTTAATTTTAGTGTAGTTTTTTTTTTTTTAACATATACTACTATTTCATTTGGTTTATGATTTGCATAATAATGATAAGAAGAACTACAAAAGTTTAAGCATCACTTATACATCTTATTTATTTCTTTTCTTAATAGATTTCAGATAGCAGGAAACACAAATAAGAAAAATGATATCTATAGCTTTGGTATAATTCTATTTGTGTTGATCACCGGAAAGAAAGCTTTAGTGAGAGCATCTGGAGAAAGCACTCACATACTTCAATGGGTTATTCCCATAGTTAAGAGCGGAGATATTGAAAACATTATGGATATGAAGTTGCAGGGTGATTTCAGCATCAGTTCTGCATGGAAAGTAGTCGAGATAGCCATGTCATGCACTTCACAAACTGTAACTGAAAGGCCAGAAATAAGCGAAATATTGGCAGAGCTAAAGGAATGTCTATCTTTGGACATGGTTCGGAGAAATAATGGAAGCACAAATGCTAGAGATGAATTTGTTTCTATAGCCACTGTATCAGAAACCAGTCTTTCAGCTAGATAA

Protein sequence

>MS.gene36730.t1

MIGMLLPLHFLSVLFGFLTILVLVQAQDQSGFISIDCGLPEHSNYSQPDTGINYISDAEFIDTGVSKSIAPTQDVIKQQLNYLRSFPNGVRNCYRINVTSDTKYLIRVSFYYGNYDNLNKPPQFDVHFGPNRWVTVKFTNVSRIVSSEIIYTPSLDYIQPCLVNTGKGTPFISVIELRTLNRDSYIIDSAKSAVVLFIRYDIGSIANFEYRYKDDVYDRIWFPFQSSFKRLNTSLTNDDRLVQSMYELPAVVMNTAVTSVNHDTPLKFAWAANNVNDQYYLYMHFNEVEELAANETRVFNISVNDKFWYGPVAPIYRTPYTTIFSLTPLPSAQTYQISLSKTENSSLPPILNAIEVYQVKNFSQSETEQEDVDTIMNIKNTYGVARNWQGDPCGPVKYMWEGLNCSIDGNNIPRITSLNLASSGLTGEILSSISKLTMLEYLDLSNNSLNGPIPDFLMQLRSLKVLNVEKNNLTGLAPSGLLERSKTGSLSLSVDDDNLGLCTTKSCKKKNIAVPLVASFSALVVILLISLGFWLFRRQKRQKVTPSNSKKRSSMKSKHQKFSYTEIVNITDNFKTIIGEGGFGKVYFGTLQDQTQVAVKRLSPSPMQGYNEFQSEAQLLMIVHHRNLVSLLGYCDETEIKALIYEYMANGNLQQHLLVETSNILNWNERLNIAVDAAHGLDYLHNGCKPPIMHRDLKPSNILLDENLHAKISDFGLSRAFGNVDDTHVSTRPAGTFGYIDPFQIAGNTNKKNDIYSFGIILFVLITGKKALVRASGESTHILQWVIPIVKSGDIENIMDMKLQGDFSISSAWKVVEIAMSCTSQTVTERPEISEILAELKECLSLDMVRRNNGSTNARDEFVSIATVSETSLSAR