AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36742

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36742.t1 MTR_8g014520 95.604 273 10 1 1 273 1 271 0.0 531
MS.gene36742.t1 MTR_8g014520 95.880 267 9 1 1 267 1 265 0.0 521
MS.gene36742.t1 MTR_2g100780 55.755 278 97 8 4 273 6 265 2.48e-86 258
MS.gene36742.t1 MTR_2g100780 55.720 271 94 8 4 266 6 258 5.92e-83 250
MS.gene36742.t1 MTR_5g030710 38.424 203 102 5 60 262 140 319 2.21e-33 124
MS.gene36742.t1 MTR_8g067530 39.773 176 88 3 88 262 182 340 2.23e-32 122
MS.gene36742.t1 MTR_6g488150 35.206 267 129 9 3 262 9 238 2.44e-32 119
MS.gene36742.t1 MTR_1g069495 38.418 177 88 4 105 262 78 252 9.59e-31 115
MS.gene36742.t1 MTR_5g067350 45.098 153 66 5 110 262 197 331 1.37e-30 117
MS.gene36742.t1 MTR_1g070520 39.877 163 85 2 97 259 77 226 4.66e-30 113
MS.gene36742.t1 MTR_1g093240 35.922 206 109 5 66 269 41 225 2.85e-29 111
MS.gene36742.t1 MTR_1g093240 36.216 185 78 4 90 262 64 220 3.04e-29 111
MS.gene36742.t1 MTR_2g101500 41.401 157 77 3 106 262 169 310 3.92e-29 113
MS.gene36742.t1 MTR_8g103030 36.548 197 95 6 76 262 101 277 7.78e-29 111
MS.gene36742.t1 MTR_1g080860 43.030 165 77 7 106 269 94 242 1.21e-28 109
MS.gene36742.t1 MTR_1g080860 43.038 158 75 6 106 262 94 237 1.63e-28 109
MS.gene36742.t1 MTR_1g040675 36.585 164 62 4 106 269 64 185 6.83e-27 103
MS.gene36742.t1 MTR_1g076270 37.037 162 56 5 105 262 55 174 5.00e-26 101
MS.gene36742.t1 MTR_1g093350 37.037 162 56 5 105 262 55 174 5.00e-26 101
MS.gene36742.t1 MTR_1g070830 30.916 262 106 8 5 262 7 197 5.39e-26 101
MS.gene36742.t1 MTR_7g096090 36.364 165 87 4 95 259 85 231 1.78e-23 96.3
MS.gene36742.t1 MTR_1g093240 33.161 193 88 5 66 246 41 204 1.43e-22 92.8
MS.gene36742.t1 MTR_4g011880 33.529 170 68 3 102 271 47 171 4.66e-20 85.5
MS.gene36742.t1 MTR_1g040675 36.429 140 47 4 106 245 64 161 8.58e-20 84.3
MS.gene36742.t1 MTR_4g124300 37.143 105 50 1 157 261 94 182 2.56e-18 80.9
MS.gene36742.t1 MTR_1g085750 36.111 108 54 3 152 259 78 170 1.34e-17 78.6
MS.gene36742.t1 MTR_7g110790 37.255 102 49 1 158 259 69 155 1.55e-17 78.2
MS.gene36742.t1 MTR_2g102490 36.893 103 58 1 159 261 88 183 3.81e-16 75.1
MS.gene36742.t1 MTR_7g062540 32.143 112 54 1 160 271 573 662 5.89e-14 72.0
MS.gene36742.t1 MTR_3g106850 26.163 172 86 5 100 262 70 209 1.08e-13 68.9
MS.gene36742.t1 MTR_4g021580 32.143 112 54 1 160 271 558 647 2.00e-13 70.5
MS.gene36742.t1 MTR_1g109510 39.604 101 44 2 159 259 85 168 3.24e-13 66.6
MS.gene36742.t1 MTR_6g488150 32.995 197 89 9 3 192 9 169 4.82e-13 66.6
MS.gene36742.t1 MTR_4g115075 26.797 153 73 5 109 260 92 206 4.86e-13 67.0
MS.gene36742.t1 MTR_5g067350 44.578 83 32 3 110 192 197 265 5.04e-12 65.1
MS.gene36742.t1 MTR_1g085750 34.043 94 47 3 152 245 78 156 2.66e-11 60.8
MS.gene36742.t1 MTR_8g027440 30.769 104 50 1 160 263 561 642 5.55e-11 63.2
MS.gene36742.t1 MTR_8g100050 27.536 138 70 4 135 270 693 802 5.96e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36742.t1 AT3G16500 47.619 273 107 7 2 272 25 263 3.16e-68 213
MS.gene36742.t1 AT3G16500 48.289 263 101 6 2 263 25 253 5.65e-68 212
MS.gene36742.t1 AT1G51950 46.332 259 88 6 11 263 38 251 1.35e-61 196
MS.gene36742.t1 AT5G25890 44.186 172 56 3 101 272 40 171 5.36e-36 127
MS.gene36742.t1 AT2G33310 40.642 187 90 5 82 262 55 226 6.13e-33 121
MS.gene36742.t1 AT2G33310 40.642 187 90 5 82 262 55 226 6.13e-33 121
MS.gene36742.t1 AT2G33310 40.642 187 91 5 82 262 55 227 1.54e-32 120
MS.gene36742.t1 AT4G29080 33.210 271 156 7 4 262 32 289 3.27e-32 120
MS.gene36742.t1 AT2G22670 42.405 158 74 5 106 262 162 303 6.85e-31 117
MS.gene36742.t1 AT2G22670 42.405 158 74 5 106 262 162 303 6.85e-31 117
MS.gene36742.t1 AT2G22670 42.405 158 74 5 106 262 162 303 7.65e-31 117
MS.gene36742.t1 AT2G22670 42.405 158 74 5 106 262 162 303 7.65e-31 117
MS.gene36742.t1 AT2G22670 42.405 158 74 5 106 262 179 320 9.41e-31 117
MS.gene36742.t1 AT4G28640 38.217 157 85 2 110 262 89 237 9.46e-31 115
MS.gene36742.t1 AT4G28640 38.217 157 85 2 110 262 89 237 1.49e-30 115
MS.gene36742.t1 AT4G28640 39.490 157 83 2 110 262 89 237 5.96e-30 114
MS.gene36742.t1 AT1G04240 33.654 208 89 6 68 269 24 188 2.07e-29 110
MS.gene36742.t1 AT1G04240 33.654 208 89 6 68 269 124 288 1.42e-28 110
MS.gene36742.t1 AT5G65670 38.365 159 78 4 106 262 180 320 5.40e-28 110
MS.gene36742.t1 AT5G65670 38.365 159 78 4 106 262 180 320 5.62e-28 110
MS.gene36742.t1 AT1G04550 37.222 180 90 5 90 262 56 219 5.77e-28 107
MS.gene36742.t1 AT1G04100 38.509 161 88 3 111 261 95 254 7.49e-28 108
MS.gene36742.t1 AT1G04250 37.288 177 79 3 91 262 64 213 9.48e-28 107
MS.gene36742.t1 AT5G43700 34.171 199 82 6 82 269 24 184 2.48e-26 102
MS.gene36742.t1 AT3G04730 41.509 159 86 4 106 262 67 220 2.86e-26 103
MS.gene36742.t1 AT4G14550 37.805 164 83 3 106 269 73 217 3.78e-26 103
MS.gene36742.t1 AT4G14550 37.580 157 81 2 106 262 73 212 4.72e-26 102
MS.gene36742.t1 AT3G15540 37.952 166 58 5 106 268 67 190 4.28e-25 99.4
MS.gene36742.t1 AT3G23030 36.709 158 53 3 110 267 61 171 3.43e-24 96.3
MS.gene36742.t1 AT3G23050 34.132 167 81 3 106 262 79 226 5.02e-24 97.4
MS.gene36742.t1 AT3G23030 36.709 158 53 3 110 267 148 258 1.60e-23 96.7
MS.gene36742.t1 AT1G52830 31.915 188 79 4 81 268 48 186 1.28e-20 87.0
MS.gene36742.t1 AT2G46990 41.284 109 48 2 153 261 80 172 1.42e-20 86.7
MS.gene36742.t1 AT3G62100 40.741 108 48 2 153 260 78 169 3.24e-20 85.5
MS.gene36742.t1 AT4G14550 35.714 140 73 2 106 245 73 195 2.13e-19 84.0
MS.gene36742.t1 AT3G17600 32.927 164 67 6 96 259 34 154 4.86e-19 82.0
MS.gene36742.t1 AT4G14560 39.252 107 49 2 159 265 76 166 4.33e-18 79.7
MS.gene36742.t1 AT3G23050 31.788 151 74 3 106 246 79 210 4.95e-17 78.2
MS.gene36742.t1 AT1G15580 34.416 154 55 5 108 261 52 159 1.44e-16 75.5
MS.gene36742.t1 AT3G62100 39.785 93 40 2 153 245 78 154 2.19e-13 66.6
MS.gene36742.t1 AT2G46990 39.785 93 40 2 153 245 80 156 3.35e-13 66.2
MS.gene36742.t1 AT2G01200 33.333 108 55 2 155 262 96 186 7.72e-12 63.2
MS.gene36742.t1 AT2G01200 33.333 108 55 2 155 262 96 186 7.72e-12 63.2
MS.gene36742.t1 AT1G04550 34.513 113 61 3 90 195 56 162 8.95e-12 62.8
MS.gene36742.t1 AT1G15050 31.356 118 61 4 148 262 48 148 2.84e-11 60.8
MS.gene36742.t1 AT1G15050 31.356 118 61 4 148 262 80 180 3.94e-11 61.2
MS.gene36742.t1 AT4G14550 35.632 87 42 1 106 192 73 145 4.60e-11 60.8

Find 57 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTCAGCTTTACCAAAT+AGG 0.279321 8.2:+78596668 MS.gene36742:CDS
CCTTTACCAGAGTTGCTAAT+AGG 0.291470 8.2:-78597237 None:intergenic
ATCAATGCAAGTGATGAAAA+AGG 0.328321 8.2:+78596570 MS.gene36742:CDS
GGCCTCCGATTCGTTCATTC+AGG 0.338350 8.2:+78597127 MS.gene36742:CDS
AAGCCACGAGTGTTCTTTAG+AGG 0.340426 8.2:+78596402 MS.gene36742:CDS
ATGATCAACGTTTACCTTCA+AGG 0.384045 8.2:-78597374 None:intergenic
AATATGGATGGAGTTCCTAT+TGG 0.394972 8.2:+78597276 MS.gene36742:CDS
CTTCAAGGAGACCTCTAAAT+AGG 0.400379 8.2:-78597359 None:intergenic
GCTGTTGATGACCTATTTAG+AGG 0.418459 8.2:+78597348 MS.gene36742:CDS
GAAGGAGACAAGATGCTTGT+AGG 0.431752 8.2:+78598109 MS.gene36742:CDS
AAGCAAGAGGAAGAAGATAA+AGG 0.433944 8.2:+78598031 MS.gene36742:CDS
AGCAGGAAGATCAGAACTCT+TGG 0.434060 8.2:-78598472 None:intergenic
CTATTTAGAGGTCTCCTTGA+AGG 0.443321 8.2:+78597360 MS.gene36742:CDS
AAAGGATCATTGACTGGAAG+TGG 0.456184 8.2:+78598058 MS.gene36742:CDS
ATATGGATGGAGTTCCTATT+GGG 0.456891 8.2:+78597277 MS.gene36742:CDS
GCTGAATTTCTTGCAGAAGA+AGG 0.458077 8.2:-78596655 None:intergenic
GCCTACTGAGTCCCGGCCTA+TGG 0.458539 8.2:+78597182 MS.gene36742:CDS
CTTGTTTGTGAAGATCAATA+TGG 0.475066 8.2:+78597260 MS.gene36742:CDS
AAGGAGACAAGATGCTTGTA+GGG 0.476173 8.2:+78598110 MS.gene36742:CDS
TTCTTTAGAGGAGAGGAAGT+TGG 0.479218 8.2:+78596414 MS.gene36742:CDS
ATTGACATCAATGCTTATGA+TGG 0.483130 8.2:+78597306 MS.gene36742:CDS
CTTGTTTATGAAGATAATGA+AGG 0.488627 8.2:+78598091 MS.gene36742:CDS
CCTATTAGCAACTCTGGTAA+AGG 0.491874 8.2:+78597237 MS.gene36742:CDS
GAAGAAGATAAAGGCATCAA+AGG 0.503044 8.2:+78598040 MS.gene36742:CDS
GCAGAGATAAATTTATCTCA+TGG 0.505424 8.2:+78597998 MS.gene36742:intron
ATCGGAGGCCAACCTACTAC+TGG 0.509519 8.2:-78597114 None:intergenic
GAGCTTAGACTTGGTCCACC+TGG 0.509843 8.2:+78596436 MS.gene36742:CDS
GAAGAATCATCACTCACTCT+TGG 0.524837 8.2:+78596514 MS.gene36742:CDS
GGCATCAAAGGATCATTGAC+TGG 0.528381 8.2:+78598052 MS.gene36742:CDS
TTCTTCCTGAATGAACGAAT+CGG 0.538928 8.2:-78597132 None:intergenic
TACCAAATAGGTCTCAGAAA+AGG 0.539367 8.2:+78596680 MS.gene36742:CDS
AGGAAGTTGGAGCTTAGACT+TGG 0.541596 8.2:+78596427 MS.gene36742:CDS
AATGCTGCTAGTCCAGTAGT+AGG 0.545474 8.2:+78597102 MS.gene36742:CDS
CTGCTAGTCCAGTAGTAGGT+TGG 0.549015 8.2:+78597106 MS.gene36742:CDS
TGCTTGTAGGGGACGTGCCG+TGG 0.551530 8.2:+78598122 MS.gene36742:CDS
TTGACAAACTCTTCTTCACC+AGG 0.560561 8.2:-78596454 None:intergenic
CCTTGTCTTGAACCATAGGC+CGG 0.561981 8.2:-78597194 None:intergenic
CCGGCCTATGGTTCAAGACA+AGG 0.569410 8.2:+78597194 MS.gene36742:CDS
TTCAGGAAGAACATTGCAAG+TGG 0.570187 8.2:+78597144 MS.gene36742:CDS
TAAAACTCACGGTTAAAAGC+AGG 0.572204 8.2:-78598489 None:intergenic
TCTTGCAAGTTTGTGCAACA+AGG 0.574470 8.2:-78596610 None:intergenic
ATAACCTTGTCTTGAACCAT+AGG 0.576939 8.2:-78597198 None:intergenic
ACCATAGGCCGGGACTCAGT+AGG 0.584604 8.2:-78597183 None:intergenic
ACGAGTGTTCTTTAGAGGAG+AGG 0.584993 8.2:+78596407 MS.gene36742:CDS
TGGAATTAACAAGAAGCAAG+AGG 0.591043 8.2:+78598018 MS.gene36742:CDS
CTAAGCCGCCTACTGAGTCC+CGG 0.597620 8.2:+78597175 MS.gene36742:CDS
CTTGTCTTGAACCATAGGCC+GGG 0.603934 8.2:-78597193 None:intergenic
TTTGTGAAGATCAATATGGA+TGG 0.610573 8.2:+78597264 MS.gene36742:CDS
TGTTTGTATCCACAGTGAAG+AGG 0.617893 8.2:+78598439 MS.gene36742:CDS
TGATAAGATACTTACTGCCA+CGG 0.622281 8.2:-78598139 None:intergenic
TGTTGCACAAACTTGCAAGA+TGG 0.633974 8.2:+78596613 MS.gene36742:CDS
ATAGGCCGGGACTCAGTAGG+CGG 0.638385 8.2:-78597180 None:intergenic
TTCCTGAATGAACGAATCGG+AGG 0.657416 8.2:-78597129 None:intergenic
ACAAACTCTTCTTCACCAGG+TGG 0.675573 8.2:-78596451 None:intergenic
TCTCCTCTAAAGAACACTCG+TGG 0.702360 8.2:-78596405 None:intergenic
AGGAGACAAGATGCTTGTAG+GGG 0.714162 8.2:+78598111 MS.gene36742:CDS
CACACGCAGCCTCTTCACTG+TGG 0.724956 8.2:-78598448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTATATGAAATTTATG+AGG + chr8.2:78598716-78598735 MS.gene36742:intron 15.0%
!! ATAAAGATTTAAATTGTTGT+TGG + chr8.2:78596853-78596872 MS.gene36742:intron 15.0%
!! TTAAAACAAAATTCACTTAA+AGG - chr8.2:78597931-78597950 None:intergenic 15.0%
!!! AAAAACTAATAGTTCTTTTA+AGG - chr8.2:78598592-78598611 None:intergenic 15.0%
!!! ACTATAGTTTTAAAAAACAA+AGG - chr8.2:78598260-78598279 None:intergenic 15.0%
!!! GTATATTTTTAATGATCTAA+CGG - chr8.2:78597872-78597891 None:intergenic 15.0%
!!! TAATTTTTAATGTGTATGTT+TGG + chr8.2:78598411-78598430 MS.gene36742:intron 15.0%
!! AATGCTTTAGTTATGATAAT+TGG + chr8.2:78598365-78598384 MS.gene36742:intron 20.0%
!! AGTTAAAAAACTAAAACTCA+CGG - chr8.2:78598503-78598522 None:intergenic 20.0%
!! ATTGTCCTTAAATATTTGTT+TGG - chr8.2:78597800-78597819 None:intergenic 20.0%
!! CTATATATAATTCTTGCAAT+TGG + chr8.2:78598302-78598321 MS.gene36742:intron 20.0%
!! TTTACTAGTTCATAAAATTC+AGG + chr8.2:78598949-78598968 MS.gene36742:intron 20.0%
!! TTTCACCAAACAAATATTTA+AGG + chr8.2:78597792-78597811 MS.gene36742:intron 20.0%
!!! TATTTGTCTTCTTTTATGTA+GGG + chr8.2:78597012-78597031 MS.gene36742:intron 20.0%
! AAAACTCACACAATAACATA+GGG - chr8.2:78598333-78598352 None:intergenic 25.0%
! AAATATTGTGATGTATGAGT+TGG - chr8.2:78599036-78599055 None:intergenic 25.0%
! CAAAATAAAACATGATATCG+CGG - chr8.2:78596772-78596791 None:intergenic 25.0%
! CAAAATAAATCAGGATTAAG+AGG - chr8.2:78599178-78599197 None:intergenic 25.0%
! CTTGTTTATGAAGATAATGA+AGG + chr8.2:78598091-78598110 MS.gene36742:CDS 25.0%
! GACACAATTATTGCATTAAA+AGG - chr8.2:78597535-78597554 None:intergenic 25.0%
! TACAAATCATAGAGTGATTA+GGG + chr8.2:78598633-78598652 MS.gene36742:intron 25.0%
! TTCATATACAATTTAGTCCT+TGG - chr8.2:78598709-78598728 None:intergenic 25.0%
! TTCTCAATTAAAGTTGAGTT+TGG - chr8.2:78599141-78599160 None:intergenic 25.0%
! TTTAAGGACAATGATATACA+TGG + chr8.2:78597808-78597827 MS.gene36742:intron 25.0%
! TTTCAATCATAACTACTTCT+AGG + chr8.2:78597902-78597921 MS.gene36742:intron 25.0%
!! CTATTTGTCTTCTTTTATGT+AGG + chr8.2:78597011-78597030 MS.gene36742:intron 25.0%
!! CTCTTAATCCTGATTTATTT+TGG + chr8.2:78599176-78599195 MS.gene36742:intron 25.0%
!! TGGAAATGTTTTTCTTTGTT+GGG + chr8.2:78597617-78597636 MS.gene36742:intron 25.0%
AAAAAACCTATTAGCAACTC+TGG + chr8.2:78597231-78597250 MS.gene36742:CDS 30.0%
AATTATTGCATTAAAAGGCC+AGG - chr8.2:78597530-78597549 None:intergenic 30.0%
ACCTAGTCATAAATTGTAAC+AGG + chr8.2:78598680-78598699 MS.gene36742:intron 30.0%
ACCTGTTACAATTTATGACT+AGG - chr8.2:78598684-78598703 None:intergenic 30.0%
ATCAATGCAAGTGATGAAAA+AGG + chr8.2:78596570-78596589 MS.gene36742:CDS 30.0%
ATGACTAGGTGATCATAATT+TGG - chr8.2:78598670-78598689 None:intergenic 30.0%
ATTGACATCAATGCTTATGA+TGG + chr8.2:78597306-78597325 MS.gene36742:CDS 30.0%
CAAAACTCACACAATAACAT+AGG - chr8.2:78598334-78598353 None:intergenic 30.0%
CAAAAGATGTAGGTAACAAA+AGG - chr8.2:78597677-78597696 None:intergenic 30.0%
CTTATAAGAGAGAAAAGCAA+AGG - chr8.2:78596710-78596729 None:intergenic 30.0%
CTTGTTTGTGAAGATCAATA+TGG + chr8.2:78597260-78597279 MS.gene36742:CDS 30.0%
GAAATTCAGCTTTACCAAAT+AGG + chr8.2:78596668-78596687 MS.gene36742:CDS 30.0%
GACATGTTACAATTTCAATG+AGG + chr8.2:78598924-78598943 MS.gene36742:intron 30.0%
GATCACAACCAAAATAAATC+AGG - chr8.2:78599187-78599206 None:intergenic 30.0%
GCAGAGATAAATTTATCTCA+TGG + chr8.2:78597998-78598017 MS.gene36742:intron 30.0%
GCTATTTAGTCAAAAGATGT+AGG - chr8.2:78597687-78597706 None:intergenic 30.0%
GTACAAATCATAGAGTGATT+AGG + chr8.2:78598632-78598651 MS.gene36742:intron 30.0%
TAAATGTTCTTGTTCACAGT+TGG + chr8.2:78599217-78599236 MS.gene36742:intron 30.0%
TAACTTAAAGCTAGCTAGTT+TGG + chr8.2:78598518-78598537 MS.gene36742:intron 30.0%
TTTGTGAAGATCAATATGGA+TGG + chr8.2:78597264-78597283 MS.gene36742:CDS 30.0%
! ATGTCAATTTTTCTCCCAAT+AGG - chr8.2:78597294-78597313 None:intergenic 30.0%
! GTACAAGTCTTCTAAAGAAA+AGG + chr8.2:78598557-78598576 MS.gene36742:intron 30.0%
! GTGGAAATGTTTTTCTTTGT+TGG + chr8.2:78597616-78597635 MS.gene36742:intron 30.0%
!! ATTGTGAGTATCGAATGAAA+TGG - chr8.2:78598976-78598995 None:intergenic 30.0%
!! GTCTGATTTTAATCTATCGA+CGG + chr8.2:78597452-78597471 MS.gene36742:intron 30.0%
!! TGACATAACTTTTTGTTGTG+TGG + chr8.2:78597597-78597616 MS.gene36742:intron 30.0%
!!! GTTTCAATTGCATTTTAGCT+AGG - chr8.2:78597745-78597764 None:intergenic 30.0%
AAGCAAGAGGAAGAAGATAA+AGG + chr8.2:78598031-78598050 MS.gene36742:CDS 35.0%
AATATGGATGGAGTTCCTAT+TGG + chr8.2:78597276-78597295 MS.gene36742:CDS 35.0%
ATAACCTTGTCTTGAACCAT+AGG - chr8.2:78597201-78597220 None:intergenic 35.0%
ATATGGATGGAGTTCCTATT+GGG + chr8.2:78597277-78597296 MS.gene36742:CDS 35.0%
ATCTAACTCAATGTCTACCA+TGG + chr8.2:78597479-78597498 MS.gene36742:intron 35.0%
ATGATCAACGTTTACCTTCA+AGG - chr8.2:78597377-78597396 None:intergenic 35.0%
ATGATTGATTGACAGTGCAA+CGG - chr8.2:78597847-78597866 None:intergenic 35.0%
CAAGTAACATTCAAAACTCC+TGG + chr8.2:78597706-78597725 MS.gene36742:intron 35.0%
CAATCATAACTACTTCTAGG+TGG + chr8.2:78597905-78597924 MS.gene36742:intron 35.0%
CATATCTGCAACCACAATTA+CGG - chr8.2:78596983-78597002 None:intergenic 35.0%
GGTATCTGTGAATTCAATTG+TGG - chr8.2:78596943-78596962 None:intergenic 35.0%
TAAAACTCACGGTTAAAAGC+AGG - chr8.2:78598492-78598511 None:intergenic 35.0%
TAAATTGTAACAGGTCACCA+AGG + chr8.2:78598689-78598708 MS.gene36742:intron 35.0%
TACCAAATAGGTCTCAGAAA+AGG + chr8.2:78596680-78596699 MS.gene36742:CDS 35.0%
TGACTGTAGTAAAAATGCCA+TGG - chr8.2:78597499-78597518 None:intergenic 35.0%
TGATAAGATACTTACTGCCA+CGG - chr8.2:78598142-78598161 None:intergenic 35.0%
TGGAATTAACAAGAAGCAAG+AGG + chr8.2:78598018-78598037 MS.gene36742:CDS 35.0%
TTCTTCCTGAATGAACGAAT+CGG - chr8.2:78597135-78597154 None:intergenic 35.0%
! CTGATAATTTGTGTCGTTAG+AGG - chr8.2:78598888-78598907 None:intergenic 35.0%
! GTGGTTGCAGATATGAATTT+TGG + chr8.2:78596988-78597007 MS.gene36742:intron 35.0%
!! CTAGGTTGACATTTTATACC+AGG - chr8.2:78597727-78597746 None:intergenic 35.0%
!! GAAGAAGATAAAGGCATCAA+AGG + chr8.2:78598040-78598059 MS.gene36742:CDS 35.0%
!! GAAGCTATGATTTGTTACTG+TGG + chr8.2:78598387-78598406 MS.gene36742:intron 35.0%
!!! AGCAGCATTTCTGTTTTAGT+TGG - chr8.2:78597091-78597110 None:intergenic 35.0%
!!! TACCTTTTCTGAGACCTATT+TGG - chr8.2:78596685-78596704 None:intergenic 35.0%
AAGGAGACAAGATGCTTGTA+GGG + chr8.2:78598110-78598129 MS.gene36742:CDS 40.0%
CCTATTAGCAACTCTGGTAA+AGG + chr8.2:78597237-78597256 MS.gene36742:CDS 40.0%
CCTTTACCAGAGTTGCTAAT+AGG - chr8.2:78597240-78597259 None:intergenic 40.0%
CTATTTAGAGGTCTCCTTGA+AGG + chr8.2:78597360-78597379 MS.gene36742:CDS 40.0%
CTCAATTGCAGCTACAATTG+TGG - chr8.2:78596806-78596825 None:intergenic 40.0%
CTTCAAGGAGACCTCTAAAT+AGG - chr8.2:78597362-78597381 None:intergenic 40.0%
GAAGAATCATCACTCACTCT+TGG + chr8.2:78596514-78596533 MS.gene36742:CDS 40.0%
GATACCAAAACCTAACGTTG+TGG + chr8.2:78596957-78596976 MS.gene36742:intron 40.0%
GCTGAATTTCTTGCAGAAGA+AGG - chr8.2:78596658-78596677 None:intergenic 40.0%
TCTTGCAAGTTTGTGCAACA+AGG - chr8.2:78596613-78596632 None:intergenic 40.0%
TGTTGCACAAACTTGCAAGA+TGG + chr8.2:78596613-78596632 MS.gene36742:CDS 40.0%
TGTTTGTATCCACAGTGAAG+AGG + chr8.2:78598439-78598458 MS.gene36742:CDS 40.0%
TTCAGGAAGAACATTGCAAG+TGG + chr8.2:78597144-78597163 MS.gene36742:CDS 40.0%
TTGACAAACTCTTCTTCACC+AGG - chr8.2:78596457-78596476 None:intergenic 40.0%
! AAAGGATCATTGACTGGAAG+TGG + chr8.2:78598058-78598077 MS.gene36742:CDS 40.0%
! TTCTTTAGAGGAGAGGAAGT+TGG + chr8.2:78596414-78596433 MS.gene36742:CDS 40.0%
!! GCTGTTGATGACCTATTTAG+AGG + chr8.2:78597348-78597367 MS.gene36742:CDS 40.0%
AAGCCACGAGTGTTCTTTAG+AGG + chr8.2:78596402-78596421 MS.gene36742:CDS 45.0%
AATGCTGCTAGTCCAGTAGT+AGG + chr8.2:78597102-78597121 MS.gene36742:CDS 45.0%
ACAAACTCTTCTTCACCAGG+TGG - chr8.2:78596454-78596473 None:intergenic 45.0%
ACAATTACGGCCACAACGTT+AGG - chr8.2:78596970-78596989 None:intergenic 45.0%
ACTACAGTCAATCCAGATCC+TGG + chr8.2:78597509-78597528 MS.gene36742:intron 45.0%
AGCAGGAAGATCAGAACTCT+TGG - chr8.2:78598475-78598494 None:intergenic 45.0%
AGGAAGTTGGAGCTTAGACT+TGG + chr8.2:78596427-78596446 MS.gene36742:CDS 45.0%
AGGAGACAAGATGCTTGTAG+GGG + chr8.2:78598111-78598130 MS.gene36742:CDS 45.0%
GAAGGAGACAAGATGCTTGT+AGG + chr8.2:78598109-78598128 MS.gene36742:CDS 45.0%
GGCATCAAAGGATCATTGAC+TGG + chr8.2:78598052-78598071 MS.gene36742:CDS 45.0%
TAACGTTGTGGCCGTAATTG+TGG + chr8.2:78596969-78596988 MS.gene36742:intron 45.0%
TGCATTAAAAGGCCAGGATC+TGG - chr8.2:78597524-78597543 None:intergenic 45.0%
TTCCTGAATGAACGAATCGG+AGG - chr8.2:78597132-78597151 None:intergenic 45.0%
! ACGAGTGTTCTTTAGAGGAG+AGG + chr8.2:78596407-78596426 MS.gene36742:CDS 45.0%
! TCTCCTCTAAAGAACACTCG+TGG - chr8.2:78596408-78596427 None:intergenic 45.0%
CCTTGTCTTGAACCATAGGC+CGG - chr8.2:78597197-78597216 None:intergenic 50.0%
CTGCTAGTCCAGTAGTAGGT+TGG + chr8.2:78597106-78597125 MS.gene36742:CDS 50.0%
CTTGTCTTGAACCATAGGCC+GGG - chr8.2:78597196-78597215 None:intergenic 50.0%
! ACGGCCACAACGTTAGGTTT+TGG - chr8.2:78596964-78596983 None:intergenic 50.0%
ATCGGAGGCCAACCTACTAC+TGG - chr8.2:78597117-78597136 None:intergenic 55.0%
CCGGCCTATGGTTCAAGACA+AGG + chr8.2:78597194-78597213 MS.gene36742:CDS 55.0%
! GAGCTTAGACTTGGTCCACC+TGG + chr8.2:78596436-78596455 MS.gene36742:CDS 55.0%
! GGCCTCCGATTCGTTCATTC+AGG + chr8.2:78597127-78597146 MS.gene36742:CDS 55.0%
ACCATAGGCCGGGACTCAGT+AGG - chr8.2:78597186-78597205 None:intergenic 60.0%
ATAGGCCGGGACTCAGTAGG+CGG - chr8.2:78597183-78597202 None:intergenic 60.0%
CACACGCAGCCTCTTCACTG+TGG - chr8.2:78598451-78598470 None:intergenic 60.0%
CTAAGCCGCCTACTGAGTCC+CGG + chr8.2:78597175-78597194 MS.gene36742:CDS 60.0%
GCCTACTGAGTCCCGGCCTA+TGG + chr8.2:78597182-78597201 MS.gene36742:CDS 65.0%
TGCTTGTAGGGGACGTGCCG+TGG + chr8.2:78598122-78598141 MS.gene36742:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 78596391 78599255 78596391 ID=MS.gene36742
chr8.2 mRNA 78596391 78599255 78596391 ID=MS.gene36742.t1;Parent=MS.gene36742
chr8.2 exon 78596391 78596701 78596391 ID=MS.gene36742.t1.exon1;Parent=MS.gene36742.t1
chr8.2 CDS 78596391 78596701 78596391 ID=cds.MS.gene36742.t1;Parent=MS.gene36742.t1
chr8.2 exon 78597101 78597381 78597101 ID=MS.gene36742.t1.exon2;Parent=MS.gene36742.t1
chr8.2 CDS 78597101 78597381 78597101 ID=cds.MS.gene36742.t1;Parent=MS.gene36742.t1
chr8.2 exon 78598002 78598146 78598002 ID=MS.gene36742.t1.exon3;Parent=MS.gene36742.t1
chr8.2 CDS 78598002 78598146 78598002 ID=cds.MS.gene36742.t1;Parent=MS.gene36742.t1
chr8.2 exon 78598437 78598501 78598437 ID=MS.gene36742.t1.exon4;Parent=MS.gene36742.t1
chr8.2 CDS 78598437 78598501 78598437 ID=cds.MS.gene36742.t1;Parent=MS.gene36742.t1
chr8.2 exon 78599236 78599255 78599236 ID=MS.gene36742.t1.exon5;Parent=MS.gene36742.t1
chr8.2 CDS 78599236 78599255 78599236 ID=cds.MS.gene36742.t1;Parent=MS.gene36742.t1
Gene Sequence

>MS.gene36742

ATGTGGCAAAGAAGCCACGAGTGTTCTTTAGAGGAGAGGAAGTTGGAGCTTAGACTTGGTCCACCTGGTGAAGAAGAGTTTGTCAATGAAAAAAGCTTGAAGAATGTCAAAAAAGAAAGAGATGAAGAATCATCACTCACTCTTGGTTATGCTAAAGCTTCATCATTTCTTAAGCTCTCATCAATGCAAGTGATGAAAAAGGATGCATCACAATCACAACCTTGTTGCACAAACTTGCAAGATGGTGAGAAAAATGCATTCTCTCCTTCTTCTGCAAGAAATTCAGCTTTACCAAATAGGTCTCAGAAAAGGTACTCCTTTGCTTTTCTCTCTTATAAGTTATATCTTTGTTTATCGTTTTAAATTGCAGTCAGCAAGCCGCGATATCATGTTTTATTTTGTCTAAAAGTGACCACAATTGTAGCTGCAATTGAGTTATTGCAAGTGAATGTTGTTTATATTATAAAGATTTAAATTGTTGTTGGTTTCGATCATGTCGTAATTCTTGATATTACAGTCAAACTGTGAATAAATGTATTGTTGATAAAACCACAATTGAATTCACAGATACCAAAACCTAACGTTGTGGCCGTAATTGTGGTTGCAGATATGAATTTTGGCTATTTGTCTTCTTTTATGTAGGGATGATGATTACTTTTTCTGTTTATTTTCATGTCTAACTTTATATTATTATGATCCAACTAAAACAGAAATGCTGCTAGTCCAGTAGTAGGTTGGCCTCCGATTCGTTCATTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGCCGCCTACTGAGTCCCGGCCTATGGTTCAAGACAAGGTTATTGTTGATAGTAAAAAACCTATTAGCAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAGTTCCTATTGGGAGAAAAATTGACATCAATGCTTATGATGGCTATGAAAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTTGAAGGTAAACGTTGATCATCGATAAAATGAGATCAGAATGATTGTGTTTTAACTTCAAAGTTCGAATATGAATCGTCTGATTTTAATCTATCGACGGAGTCATCTAACTCAATGTCTACCATGGCATTTTTACTACAGTCAATCCAGATCCTGGCCTTTTAATGCAATAATTGTGTCTTGTGTAGTCTATTTAATTTCAATTGTTTATTCATTTGTTCTTGACATAACTTTTTGTTGTGTGGAAATGTTTTTCTTTGTTGGGAAATAAAAGCTTGAATAAGTTAGACATGTTCTCTCCTTTTGTTACCTACATCTTTTGACTAAATAGCAAGTAACATTCAAAACTCCTGGTATAAAATGTCAACCTAGCTAAAATGCAATTGAAACAACTACATTAGCTTATAGTCAATCTATTTTCACCAAACAAATATTTAAGGACAATGATATACATGGTTATAGTAAACGTCCGTTGCACTGTCAATCAATCATTGCCGTTAGATCATTAAAAATATACGACTTCATTATTTCAATCATAACTACTTCTAGGTGGCCTTTAAGTGAATTTTGTTTTAATAATTCTTTCTAAGCTCACATAAAGACTGTGATTATGAAAATTTGTTGCAGAGATAAATTTATCTCATGGAATTAACAAGAAGCAAGAGGAAGAAGATAAAGGCATCAAAGGATCATTGACTGGAAGTGGAGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCAGTAAGTATCTTATCAATGTGAATCTGATGCATTTTTCATCTTATTCTATTCAATATTTTTTATATTGTTTATATTCTTTGAATAGTGTTTCAATGCTAATGCAAAATTAACCTTTGTTTTTTAAAACTATAGTTTCTTGTGCTTAACAATTACTACTATATATAATTCTTGCAATTGGCTTTTCCCTATGTTATTGTGTGAGTTTTGTTTATTTTTTCAATGCTTTAGTTATGATAATTGGAAGCTATGATTTGTTACTGTGGTTAATTTTTAATGTGTATGTTTGGCAGCATGTTTGTATCCACAGTGAAGAGGCTGCGTGTGTCCAAGAGTTCTGATCTTCCTGCTTTTAACCGTGAGTTTTAGTTTTTTAACTTAAAGCTAGCTAGTTTGGAAAAACTTCTCAACAAGTACAAGTCTTCTAAAGAAAAGGAAAAAAGAACCTTAAAAGAACTATTAGTTTTTGAAAAAGAAAAAAAAAATGTGTACAAATCATAGAGTGATTAGGGAAATTAGTACACCAAATTATGATCACCTAGTCATAAATTGTAACAGGTCACCAAGGACTAAATTGTATATGAAATTTATGAGGTAAAATTTATTTTCATAGTTGTATTCTAAGATGAAAATTTTAGAGTTGACATGAAATGCATGAATTTAACTATTATTATATAAGTTTTTTAGTGATGTGAGATTCACGTAAAATGACACATATTCATTTAACATGTCACGTCATAGCCTCTAACGACACAAATTATCAGATGAACTATTTTATGTGACATGTTACAATTTCAATGAGGTATTTACTAGTTCATAAAATTCAGGACCATTTCATTCGATACTCACAATTTCAATAATCAATTTGCATATTCATTTTAAATTAAAACCAACTCATACATCACAATATTTGAAGCACTTTCATTTAACATCTTCATAAGCTTATATTGATTAGTTCATAAACTAGAAATTTTAGTGAGCTATAACAGCTAATCCAAACTCAACTTTAATTGAGAATAATTAATTATCTACCTCTTAATCCTGATTTATTTTGGTTGTGATCAATGATTGAATAAATGTTCTTGTTCACAGTTGGTAGCAAGAAAGACTAG
Protein sequence

>MS.gene36742.t1

MWQRSHECSLEERKLELRLGPPGEEEFVNEKSLKNVKKERDEESSLTLGYAKASSFLKLSSMQVMKKDASQSQPCCTNLQDGEKNAFSPSSARNSALPNRSQKRNAASPVVGWPPIRSFRKNIASGSSSKPPTESRPMVQDKVIVDSKKPISNSGKGLFVKINMDGVPIGRKIDINAYDGYEKLSSAVDDLFRGLLEEINLSHGINKKQEEEDKGIKGSLTGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNLGSKKD