AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37117

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37117.t1 MTR_6g016640 98.945 379 4 0 1 379 111 489 0.0 791
MS.gene37117.t1 MTR_6g016635 98.945 379 4 0 1 379 111 489 0.0 790
MS.gene37117.t1 MTR_6g016650 97.098 379 11 0 1 379 111 489 0.0 779
MS.gene37117.t1 MTR_7g020820 81.530 379 70 0 1 379 113 491 0.0 666
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37117.t1 AT5G38710 60.950 379 145 3 1 376 97 475 2.15e-171 487
MS.gene37117.t1 AT3G30775 62.467 381 140 3 1 378 118 498 3.18e-168 479
MS.gene37117.t1 AT3G30775 62.467 381 140 3 1 378 118 498 3.18e-168 479
MS.gene37117.t1 AT5G38710 60.811 370 142 3 1 367 97 466 3.40e-167 476

Find 60 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTCTTGTGGTGTTAA+TGG 0.140964 6.2:+12153143 None:intergenic
GGTTGTGATCGTAATCTTAA+AGG 0.228265 6.2:-12155361 MS.gene37117:CDS
TTACGTGGCATGCTTGTTTA+TGG 0.238176 6.2:-12155409 MS.gene37117:CDS
ACAAAAGCTGCTGAAGAAAT+TGG 0.246885 6.2:-12152900 MS.gene37117:CDS
TCTTGTGGTGTTAATGGTTC+TGG 0.257780 6.2:+12153149 None:intergenic
AGTACATTGGCTGAGTCTTT+TGG 0.274273 6.2:-12152828 MS.gene37117:CDS
GGACTTGATTCTGAGAAAAT+TGG 0.279493 6.2:+12153194 None:intergenic
TGAAGAAAATAGAGGTCTTT+TGG 0.285176 6.2:-12152001 MS.gene37117:CDS
TGAAGCAAACATGCCATTAT+TGG 0.332553 6.2:-12153069 MS.gene37117:CDS
GATGATAATCCAATTGTGTT+TGG 0.348930 6.2:-12152972 MS.gene37117:CDS
GCAGCAAAAGCATATGAAAT+TGG 0.349585 6.2:-12152177 MS.gene37117:CDS
ATGGGATTTAAGTTGGTTAG+AGG 0.360764 6.2:-12152870 MS.gene37117:CDS
TTGCTTGAGAAGTTTGCTAA+TGG 0.363959 6.2:-12152738 MS.gene37117:CDS
GTTAGCAAGTATATGCCATT+TGG 0.380807 6.2:-12152063 MS.gene37117:CDS
GTTGTGATCGTAATCTTAAA+GGG 0.388070 6.2:-12155360 MS.gene37117:CDS
TGAATTGTTCCAAACACAAT+TGG 0.392760 6.2:+12152963 None:intergenic
TGTTCTGCATCAACCAATAA+TGG 0.396120 6.2:+12153056 None:intergenic
TGGCTGCTTCTGGATTTGAT+AGG 0.400035 6.2:-12151981 MS.gene37117:CDS
TCATTTGGTTTGAGCAATGC+AGG 0.402184 6.2:-12152093 MS.gene37117:CDS
TTGCTGCTGGAAAGAGTATA+AGG 0.405411 6.2:-12155450 MS.gene37117:CDS
GAGAAGTTTGCTAATGGAAA+AGG 0.409585 6.2:-12152732 MS.gene37117:CDS
ATGTCAGATGCACTTTCATT+TGG 0.412207 6.2:-12152108 MS.gene37117:CDS
TGAAGAAATTGGAATTCCTA+TGG 0.436982 6.2:-12152889 MS.gene37117:CDS
TTCCATGGTAAATTGAATGA+AGG 0.441489 6.2:+12153230 None:intergenic
TCTTCAATAGTATCATGAAT+TGG 0.450449 6.2:+12152795 None:intergenic
AATTAGAAACTTACAGAAGA+TGG 0.452786 6.2:+12155301 None:intergenic
AATTCCTATGGGATTTAAGT+TGG 0.453707 6.2:-12152877 MS.gene37117:CDS
GCCACACACAACATTGAATC+AGG 0.460276 6.2:-12152696 MS.gene37117:intron
GGAGAAGATGCTATTGCTGC+TGG 0.477420 6.2:-12155463 MS.gene37117:CDS
CAAGTATATGCCATTTGGAC+CGG 0.477874 6.2:-12152058 MS.gene37117:CDS
TGAAAATCACTTTCTTCTTG+TGG 0.479035 6.2:+12153134 None:intergenic
GGTAGAGAATCTTGTTTCCA+TGG 0.482797 6.2:+12153215 None:intergenic
ATAAGGTCTGTTAATGAAGC+TGG 0.484228 6.2:-12155433 MS.gene37117:CDS
ACCATCTCAACCGGTCCAAA+TGG 0.484875 6.2:+12152048 None:intergenic
AACTTATTTGAAAGATGCTA+AGG 0.486569 6.2:-12152940 MS.gene37117:CDS
AAAGCATATGAAATTGGAAT+GGG 0.486854 6.2:-12152171 MS.gene37117:CDS
TCAGCTCTTCTCAATAGATA+AGG 0.492915 6.2:+12152021 None:intergenic
TGTACAGAAAAGAGCTTGGA+AGG 0.493267 6.2:-12151852 MS.gene37117:intron
CTTGAATTTGCACAACTATG+TGG 0.497379 6.2:-12152132 MS.gene37117:CDS
ATTCTTTCTAGTAATGCCAT+TGG 0.513353 6.2:+12153284 None:intergenic
CATTTGGTTTGAGCAATGCA+GGG 0.525718 6.2:-12152092 MS.gene37117:CDS
GAAGAAATTGGAATTCCTAT+GGG 0.526541 6.2:-12152888 MS.gene37117:CDS
GCCATTTGGACCGGTTGAGA+TGG 0.531841 6.2:-12152049 MS.gene37117:CDS
TAAGGCATAACCATCTCAAC+CGG 0.535272 6.2:+12152039 None:intergenic
TCCATGGTAAATTGAATGAA+GGG 0.543779 6.2:+12153231 None:intergenic
AAAAGCATATGAAATTGGAA+TGG 0.545661 6.2:-12152172 MS.gene37117:CDS
TATGTGAAGTAATCAATAGC+TGG 0.545894 6.2:+12153020 None:intergenic
ACCCTTCATTCAATTTACCA+TGG 0.548501 6.2:-12153232 MS.gene37117:CDS
AGAAGAGCTGAAGAAAATAG+AGG 0.555835 6.2:-12152009 MS.gene37117:CDS
GATTTGATAGGCAACTCATA+AGG 0.560541 6.2:-12151969 MS.gene37117:intron
GAATTAGTGACCTTCTAAGA+TGG 0.566506 6.2:-12153265 MS.gene37117:CDS
GTTAATGAAGCTGGCTTACG+TGG 0.581537 6.2:-12155424 MS.gene37117:CDS
AATCACTGCAATATGTCCAA+TGG 0.585286 6.2:-12153300 MS.gene37117:CDS
CTAACCAACTTAAATCCCAT+AGG 0.606330 6.2:+12152873 None:intergenic
GTTGTGCAAATTCAAGCTTG+TGG 0.617097 6.2:+12152139 None:intergenic
GAAGATGCACATGATAATGA+TGG 0.618481 6.2:-12155382 MS.gene37117:CDS
TATGTCTACAGAAAGTACAT+TGG 0.622655 6.2:-12152841 MS.gene37117:CDS
ACCTGATTCAATGTTGTGTG+TGG 0.639027 6.2:+12152695 None:intergenic
TAGAAACTTACAGAAGATGG+AGG 0.662988 6.2:+12155304 None:intergenic
ACAGAAAAGAGCTTGGAAGG+AGG 0.680297 6.2:-12151849 MS.gene37117:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATTATTATTATTT+TGG + chr6.2:12152565-12152584 None:intergenic 0.0%
!! TCATATATTATATATAATGT+TGG - chr6.2:12153533-12153552 MS.gene37117:intron 10.0%
!!! GTTTTTTTTTTTTTTTTTGA+AGG + chr6.2:12153473-12153492 None:intergenic 10.0%
!!! TTAATTATATCACTAATTTT+AGG + chr6.2:12152391-12152410 None:intergenic 10.0%
!!! TTATTTTTTAAAACCTAAAT+TGG - chr6.2:12152288-12152307 MS.gene37117:intron 10.0%
!! AGAAAATATTTAATATGTGT+CGG - chr6.2:12154801-12154820 MS.gene37117:intron 15.0%
!! ATGTCTCAAAATAATTAAAA+AGG + chr6.2:12155415-12155434 None:intergenic 15.0%
!! ATTTAAACAAGTATTAGTAT+AGG - chr6.2:12152740-12152759 MS.gene37117:CDS 15.0%
!! GTTTATACTTTATACTAAAT+TGG - chr6.2:12153720-12153739 MS.gene37117:intron 15.0%
!!! AAAATTAGATTTTGGTATTT+TGG - chr6.2:12153625-12153644 MS.gene37117:intron 15.0%
!!! AGTGTTTAAAAATTAGATTT+TGG - chr6.2:12153617-12153636 MS.gene37117:intron 15.0%
!!! TCTTTTCTTTTTTCTTTTTA+GGG - chr6.2:12152351-12152370 MS.gene37117:intron 15.0%
!!! TTATTGATTTTTTATGTGAT+AGG - chr6.2:12153991-12154010 MS.gene37117:intron 15.0%
!!! TTCTTTTCTTTTTTCTTTTT+AGG - chr6.2:12152350-12152369 MS.gene37117:intron 15.0%
!!! TTTTATTTAAAGAAGAAAAG+AGG - chr6.2:12152148-12152167 MS.gene37117:CDS 15.0%
!! AGATACATTAAATGAAATCT+TGG + chr6.2:12155087-12155106 None:intergenic 20.0%
!! ATGTGAAATGCAAAAAAAAT+TGG + chr6.2:12153762-12153781 None:intergenic 20.0%
!! ATTAAAACTCTAGTAAGAAA+TGG + chr6.2:12153683-12153702 None:intergenic 20.0%
!! ATTAAACCTCTAATTAGAAA+TGG + chr6.2:12153244-12153263 None:intergenic 20.0%
!! ATTATTAATTTCCATGATCA+TGG - chr6.2:12152075-12152094 MS.gene37117:CDS 20.0%
!! GAAAATGTAATAATATGTGT+CGG - chr6.2:12154713-12154732 MS.gene37117:intron 20.0%
!! GAATAATAAAACTCCAATTT+AGG + chr6.2:12152304-12152323 None:intergenic 20.0%
!! TATAAACATAAGAATCACTT+TGG + chr6.2:12153947-12153966 None:intergenic 20.0%
!! TCTTTAAATAAAGATTGAAG+AGG - chr6.2:12152461-12152480 MS.gene37117:intron 20.0%
!! TGCTAAAATATCATTATTTC+TGG + chr6.2:12152688-12152707 None:intergenic 20.0%
!! TGTCTCATAATATAGATTAT+TGG - chr6.2:12153133-12153152 MS.gene37117:CDS 20.0%
!!! ATTTTAATTTACCATGATCA+TGG + chr6.2:12152089-12152108 None:intergenic 20.0%
!!! GTTACTATTTTAGACAAAAA+TGG - chr6.2:12153399-12153418 MS.gene37117:intron 20.0%
!!! TATTATTTTGGTGTAAATGA+GGG + chr6.2:12152553-12152572 None:intergenic 20.0%
!!! TTATTATTTTGGTGTAAATG+AGG + chr6.2:12152554-12152573 None:intergenic 20.0%
!!! TTTTTAAGTTGCAAAAATCT+TGG - chr6.2:12153085-12153104 MS.gene37117:CDS 20.0%
! AAAGCATATGAAATTGGAAT+GGG - chr6.2:12155162-12155181 MS.gene37117:intron 25.0%
! AACTTATTTGAAAGATGCTA+AGG - chr6.2:12154393-12154412 MS.gene37117:intron 25.0%
! AATTAGAAACTTACAGAAGA+TGG + chr6.2:12152035-12152054 None:intergenic 25.0%
! ACATTTCACACAAAAAACAT+TGG + chr6.2:12152507-12152526 None:intergenic 25.0%
! ACGATTCATATTGAAATGTA+TGG - chr6.2:12153825-12153844 MS.gene37117:intron 25.0%
! AGATCAACACTTCATATTAA+TGG + chr6.2:12154852-12154871 None:intergenic 25.0%
! ATGAAAACTCTTGTTAGAAA+TGG + chr6.2:12153449-12153468 None:intergenic 25.0%
! ATGCATATATTTCAGATTCA+AGG + chr6.2:12155035-12155054 None:intergenic 25.0%
! GTCACTTAACATATTCTAAA+AGG + chr6.2:12152326-12152345 None:intergenic 25.0%
! GTTAATCCATTTCTAATTAG+AGG - chr6.2:12153235-12153254 MS.gene37117:CDS 25.0%
! TCTTCAATAGTATCATGAAT+TGG + chr6.2:12154541-12154560 None:intergenic 25.0%
!! AAAAAAATTGGTTCTTCACA+TGG + chr6.2:12153750-12153769 None:intergenic 25.0%
!! AAAAGCATATGAAATTGGAA+TGG - chr6.2:12155161-12155180 MS.gene37117:intron 25.0%
!! TTAAAGAAGAAAAGAGGTTT+TGG - chr6.2:12152154-12152173 MS.gene37117:CDS 25.0%
!!! AAATATATTTTTGTGCCTCA+TGG - chr6.2:12152858-12152877 MS.gene37117:CDS 25.0%
!!! AGGTTTTGGTCAAATTAATT+TGG - chr6.2:12152168-12152187 MS.gene37117:CDS 25.0%
!!! ATTATTTTGGTGTAAATGAG+GGG + chr6.2:12152552-12152571 None:intergenic 25.0%
!!! ATTTTGGTATTTTGGACAAA+AGG - chr6.2:12153633-12153652 MS.gene37117:intron 25.0%
!!! GAAATGTGTTTTAATGTAAC+AGG - chr6.2:12152520-12152539 MS.gene37117:intron 25.0%
!!! TTTTGGTATTTTGGACAAAA+GGG - chr6.2:12153634-12153653 MS.gene37117:intron 25.0%
!!! TTTTTTGTAGTGTGGTATAA+TGG + chr6.2:12154163-12154182 None:intergenic 25.0%
!!! TTTTTTTTTTTGGTTGCGTA+GGG - chr6.2:12155124-12155143 MS.gene37117:intron 25.0%
!!! TTTTTTTTTTTTGGTTGCGT+AGG - chr6.2:12155123-12155142 MS.gene37117:intron 25.0%
AAAAGGGTTCATTAGTAGTT+TGG - chr6.2:12153650-12153669 MS.gene37117:intron 30.0%
AATTCCTATGGGATTTAAGT+TGG - chr6.2:12154456-12154475 MS.gene37117:intron 30.0%
AGCATGACTTGAAAAACATA+AGG - chr6.2:12152704-12152723 MS.gene37117:CDS 30.0%
AGTCATATATTGTTTGCATC+TGG - chr6.2:12153196-12153215 MS.gene37117:CDS 30.0%
GAAAATTTGACTCTTTCATG+CGG + chr6.2:12153903-12153922 None:intergenic 30.0%
GAAGAAATTGGAATTCCTAT+GGG - chr6.2:12154445-12154464 MS.gene37117:intron 30.0%
GATGATAATCCAATTGTGTT+TGG - chr6.2:12154361-12154380 MS.gene37117:intron 30.0%
GGCTTTCTGTCATAAAAATT+GGG - chr6.2:12153355-12153374 MS.gene37117:intron 30.0%
GTTGTGATCGTAATCTTAAA+GGG - chr6.2:12151973-12151992 MS.gene37117:CDS 30.0%
TATGTGAAGTAATCAATAGC+TGG + chr6.2:12154316-12154335 None:intergenic 30.0%
TCCATGGTAAATTGAATGAA+GGG + chr6.2:12154105-12154124 None:intergenic 30.0%
TGAAAATCACTTTCTTCTTG+TGG + chr6.2:12154202-12154221 None:intergenic 30.0%
TGAAGAAATTGGAATTCCTA+TGG - chr6.2:12154444-12154463 MS.gene37117:intron 30.0%
TGAATTGTTCCAAACACAAT+TGG + chr6.2:12154373-12154392 None:intergenic 30.0%
TGGCATTGTAACATAGAAAT+TGG - chr6.2:12153589-12153608 MS.gene37117:intron 30.0%
TGGCTTTCTGTCATAAAAAT+TGG - chr6.2:12153354-12153373 MS.gene37117:intron 30.0%
TTCCATGGTAAATTGAATGA+AGG + chr6.2:12154106-12154125 None:intergenic 30.0%
! ATTCTTTCTAGTAATGCCAT+TGG + chr6.2:12154052-12154071 None:intergenic 30.0%
! TATGTCTACAGAAAGTACAT+TGG - chr6.2:12154492-12154511 MS.gene37117:intron 30.0%
! TGAAGAAAATAGAGGTCTTT+TGG - chr6.2:12155332-12155351 MS.gene37117:CDS 30.0%
! TTAGCCTTCAATTTCTGAAA+GGG + chr6.2:12152785-12152804 None:intergenic 30.0%
! TTCTATGAACATTTTTGTGC+TGG - chr6.2:12151849-12151868 MS.gene37117:intron 30.0%
! TTGTTTGCATCTGGTATTTT+TGG - chr6.2:12153205-12153224 MS.gene37117:CDS 30.0%
! TTTTTGTACAGAAAAGAGCT+TGG - chr6.2:12155477-12155496 MS.gene37117:CDS 30.0%
!! ATTAGCCTTCAATTTCTGAA+AGG + chr6.2:12152786-12152805 None:intergenic 30.0%
AATCACTGCAATATGTCCAA+TGG - chr6.2:12154033-12154052 MS.gene37117:intron 35.0%
AATTGGGAAGTAGTGTTTAG+AGG - chr6.2:12153371-12153390 MS.gene37117:intron 35.0%
ACAAAAGCTGCTGAAGAAAT+TGG - chr6.2:12154433-12154452 MS.gene37117:intron 35.0%
ACAATGTACATCAACCATGT+GGG + chr6.2:12153331-12153350 None:intergenic 35.0%
ACCCTTCATTCAATTTACCA+TGG - chr6.2:12154101-12154120 MS.gene37117:intron 35.0%
AGAAGAGCTGAAGAAAATAG+AGG - chr6.2:12155324-12155343 MS.gene37117:CDS 35.0%
ATAAGGTCTGTTAATGAAGC+TGG - chr6.2:12151900-12151919 MS.gene37117:intron 35.0%
ATGTCAGATGCACTTTCATT+TGG - chr6.2:12155225-12155244 MS.gene37117:intron 35.0%
CAATCCCTTTCAGAAATTGA+AGG - chr6.2:12152778-12152797 MS.gene37117:CDS 35.0%
CTAACCAACTTAAATCCCAT+AGG + chr6.2:12154463-12154482 None:intergenic 35.0%
CTTGAATTTGCACAACTATG+TGG - chr6.2:12155201-12155220 MS.gene37117:intron 35.0%
GATTTGATAGGCAACTCATA+AGG - chr6.2:12155364-12155383 MS.gene37117:CDS 35.0%
GGTTGTGATCGTAATCTTAA+AGG - chr6.2:12151972-12151991 MS.gene37117:CDS 35.0%
GTGATGAGTATGAAATGAGT+TGG - chr6.2:12152970-12152989 MS.gene37117:CDS 35.0%
GTTAGCAAGTATATGCCATT+TGG - chr6.2:12155270-12155289 MS.gene37117:intron 35.0%
TAGAAACTTACAGAAGATGG+AGG + chr6.2:12152032-12152051 None:intergenic 35.0%
TCAGCTCTTCTCAATAGATA+AGG + chr6.2:12155315-12155334 None:intergenic 35.0%
TGAAGCAAACATGCCATTAT+TGG - chr6.2:12154264-12154283 MS.gene37117:intron 35.0%
TGTTCTGCATCAACCAATAA+TGG + chr6.2:12154280-12154299 None:intergenic 35.0%
TTTGGTCTAATAATGTAGCG+TGG - chr6.2:12152186-12152205 MS.gene37117:CDS 35.0%
! AATATTTTGTCGACGCATGT+CGG - chr6.2:12154761-12154780 MS.gene37117:intron 35.0%
! CTTCAATTTCTGAAAGGGAT+TGG + chr6.2:12152780-12152799 None:intergenic 35.0%
! CTTTCTTCTTGTGGTGTTAA+TGG + chr6.2:12154193-12154212 None:intergenic 35.0%
! CTTTTTGTTGCCATCTTAGA+AGG + chr6.2:12154081-12154100 None:intergenic 35.0%
! GAAGATGCACATGATAATGA+TGG - chr6.2:12151951-12151970 MS.gene37117:intron 35.0%
! GAATTAGTGACCTTCTAAGA+TGG - chr6.2:12154068-12154087 MS.gene37117:intron 35.0%
! GCAGCAAAAGCATATGAAAT+TGG - chr6.2:12155156-12155175 MS.gene37117:intron 35.0%
! GGACTTGATTCTGAGAAAAT+TGG + chr6.2:12154142-12154161 None:intergenic 35.0%
!! AACGTGTGTGTTTTATTGTG+CGG - chr6.2:12152918-12152937 MS.gene37117:CDS 35.0%
!! ACGTTCACTTTTCAAAGTCA+AGG + chr6.2:12152903-12152922 None:intergenic 35.0%
!! ATGGGATTTAAGTTGGTTAG+AGG - chr6.2:12154463-12154482 MS.gene37117:intron 35.0%
!! GAGAAGTTTGCTAATGGAAA+AGG - chr6.2:12154601-12154620 MS.gene37117:intron 35.0%
!! TTGCTTGAGAAGTTTGCTAA+TGG - chr6.2:12154595-12154614 MS.gene37117:intron 35.0%
!!! GTTCTGGTTTTTTTGTAGTG+TGG + chr6.2:12154171-12154190 None:intergenic 35.0%
AACCACATTGTACATCAGCT+AGG + chr6.2:12153570-12153589 None:intergenic 40.0%
AACCACATTGTCCTTAAGCT+AGG + chr6.2:12153164-12153183 None:intergenic 40.0%
ACATTGTCCTTAAGCTAGGT+GGG + chr6.2:12153160-12153179 None:intergenic 40.0%
ACCTGATTCAATGTTGTGTG+TGG + chr6.2:12154641-12154660 None:intergenic 40.0%
AGAAGTAGCATGACTTGAAC+TGG + chr6.2:12153049-12153068 None:intergenic 40.0%
ATCTTGGAATCATGTGACAG+AGG - chr6.2:12153101-12153120 MS.gene37117:CDS 40.0%
CAATGTACATCAACCATGTG+GGG + chr6.2:12153330-12153349 None:intergenic 40.0%
CACAATGTACATCAACCATG+TGG + chr6.2:12153332-12153351 None:intergenic 40.0%
GAAATCGAATTGCATGTCGT+TGG + chr6.2:12153925-12153944 None:intergenic 40.0%
GTTGTGCAAATTCAAGCTTG+TGG + chr6.2:12155197-12155216 None:intergenic 40.0%
TAAGGCATAACCATCTCAAC+CGG + chr6.2:12155297-12155316 None:intergenic 40.0%
TAGCTGATGTACAATGTGGT+TGG - chr6.2:12153569-12153588 MS.gene37117:intron 40.0%
TAGCTTAAGGACAATGTGGT+TGG - chr6.2:12153163-12153182 MS.gene37117:CDS 40.0%
TCTTGGAATCATGTGACAGA+GGG - chr6.2:12153102-12153121 MS.gene37117:CDS 40.0%
TGTACAGAAAAGAGCTTGGA+AGG - chr6.2:12155481-12155500 MS.gene37117:CDS 40.0%
TTACGTGGCATGCTTGTTTA+TGG - chr6.2:12151924-12151943 MS.gene37117:intron 40.0%
! CAAGTATATGCCATTTGGAC+CGG - chr6.2:12155275-12155294 MS.gene37117:intron 40.0%
! CACATGGTTGATGTACATTG+TGG - chr6.2:12153330-12153349 MS.gene37117:intron 40.0%
! GGTAGAGAATCTTGTTTCCA+TGG + chr6.2:12154121-12154140 None:intergenic 40.0%
! TCTTGTGGTGTTAATGGTTC+TGG + chr6.2:12154187-12154206 None:intergenic 40.0%
! TGGTTGATGTACATTGTGGT+TGG - chr6.2:12153334-12153353 MS.gene37117:intron 40.0%
! TTGCTGCTGGAAAGAGTATA+AGG - chr6.2:12151883-12151902 MS.gene37117:intron 40.0%
!! AGTACATTGGCTGAGTCTTT+TGG - chr6.2:12154505-12154524 MS.gene37117:intron 40.0%
!! CATTTGGTTTGAGCAATGCA+GGG - chr6.2:12155241-12155260 MS.gene37117:intron 40.0%
!! TCATTTGGTTTGAGCAATGC+AGG - chr6.2:12155240-12155259 MS.gene37117:intron 40.0%
!! TTTTGGTTGCGTAGGGAAAT+TGG - chr6.2:12155131-12155150 MS.gene37117:intron 40.0%
ACAGAAAAGAGCTTGGAAGG+AGG - chr6.2:12155484-12155503 MS.gene37117:CDS 45.0%
CAATCCACAACTGAACCATG+AGG + chr6.2:12152876-12152895 None:intergenic 45.0%
CACATTGTACATCAGCTAGG+TGG + chr6.2:12153567-12153586 None:intergenic 45.0%
CACATTGTCCTTAAGCTAGG+TGG + chr6.2:12153161-12153180 None:intergenic 45.0%
CACCTAGCTGATGTACAATG+TGG - chr6.2:12153565-12153584 MS.gene37117:intron 45.0%
CACCTAGCTTAAGGACAATG+TGG - chr6.2:12153159-12153178 MS.gene37117:CDS 45.0%
GCCACACACAACATTGAATC+AGG - chr6.2:12154637-12154656 MS.gene37117:intron 45.0%
GTCAGCACAATCATAGCAGT+TGG + chr6.2:12153881-12153900 None:intergenic 45.0%
TACATCAGCTAGGTGGAAGT+GGG + chr6.2:12153560-12153579 None:intergenic 45.0%
TATTGGTCCCACCTAGCTTA+AGG - chr6.2:12153150-12153169 MS.gene37117:CDS 45.0%
TGGCTGCTTCTGGATTTGAT+AGG - chr6.2:12155352-12155371 MS.gene37117:CDS 45.0%
TTTCAGATTCAAGGCGTGTC+TGG + chr6.2:12155026-12155045 None:intergenic 45.0%
! CATGGTTCAGTTGTGGATTG+TGG - chr6.2:12152876-12152895 MS.gene37117:CDS 45.0%
! GTTAATGAAGCTGGCTTACG+TGG - chr6.2:12151909-12151928 MS.gene37117:intron 45.0%
! TATTGTTGTTCCACCCCACA+TGG - chr6.2:12153314-12153333 MS.gene37117:CDS 45.0%
! TGGCTGAGTCTTTTGGATCT+AGG - chr6.2:12154512-12154531 MS.gene37117:intron 45.0%
!! AATAATAATAATAATAAAAG+AGG - chr6.2:12152617-12152636 MS.gene37117:intron 5.0%
!!! ATTGATTTTTTTTTTTTTTT+TGG - chr6.2:12155114-12155133 MS.gene37117:intron 5.0%
!!! CTATTTTTTAATTATATATA+TGG - chr6.2:12152657-12152676 MS.gene37117:intron 5.0%
ACCATCTCAACCGGTCCAAA+TGG + chr6.2:12155288-12155307 None:intergenic 50.0%
CGTGTCTGGTTGATCGATGT+GGG + chr6.2:12155012-12155031 None:intergenic 50.0%
GGAGAAGATGCTATTGCTGC+TGG - chr6.2:12151870-12151889 MS.gene37117:intron 50.0%
GTACATCAGCTAGGTGGAAG+TGG + chr6.2:12153561-12153580 None:intergenic 50.0%
TGTACATCAACCATGTGGGG+TGG + chr6.2:12153327-12153346 None:intergenic 50.0%
TGTGCCTCATGGTTCAGTTG+TGG - chr6.2:12152869-12152888 MS.gene37117:CDS 50.0%
!! AGAGGTCTTTTGGCTGCTTC+TGG - chr6.2:12155342-12155361 MS.gene37117:CDS 50.0%
GCCATTTGGACCGGTTGAGA+TGG - chr6.2:12155284-12155303 MS.gene37117:intron 55.0%
GCGTGTCTGGTTGATCGATG+TGG + chr6.2:12155013-12155032 None:intergenic 55.0%
!! GTGTCGGTGTCGTCACATGT+CGG - chr6.2:12154817-12154836 MS.gene37117:intron 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 12151828 12155527 12151828 ID=MS.gene37117
chr6.2 mRNA 12151828 12155527 12151828 ID=MS.gene37117.t1;Parent=MS.gene37117
chr6.2 exon 12155315 12155527 12155315 ID=MS.gene37117.t1.exon1;Parent=MS.gene37117.t1
chr6.2 CDS 12155315 12155527 12155315 ID=cds.MS.gene37117.t1;Parent=MS.gene37117.t1
chr6.2 exon 12152697 12153342 12152697 ID=MS.gene37117.t1.exon2;Parent=MS.gene37117.t1
chr6.2 CDS 12152697 12153342 12152697 ID=cds.MS.gene37117.t1;Parent=MS.gene37117.t1
chr6.2 exon 12151970 12152210 12151970 ID=MS.gene37117.t1.exon3;Parent=MS.gene37117.t1
chr6.2 CDS 12151970 12152210 12151970 ID=cds.MS.gene37117.t1;Parent=MS.gene37117.t1
chr6.2 exon 12151828 12151867 12151828 ID=MS.gene37117.t1.exon4;Parent=MS.gene37117.t1
chr6.2 CDS 12151828 12151867 12151828 ID=cds.MS.gene37117.t1;Parent=MS.gene37117.t1
Gene Sequence

>MS.gene37117

ATGGCAGTTACAAAGAGAACATTCTATGAACATTTTTGTGCTGGAGAAGATGCTATTGCTGCTGGAAAGAGTATAAGGTCTGTTAATGAAGCTGGCTTACGTGGCATGCTTGTTTATGGTGTTGAAGATGCACATGATAATGATGGTTGTGATCGTAATCTTAAAGGGTTTCTTCATACTGTTGATGTTAGCAAATCACTTCCTCCATCTTCTGTAAGTTTCTAATTTTATCTTGATTTATTTATTTATTATTAATTTCCATGATCATGGTAAATTAAAATTGTTTAAGATCTCTTTAGATTAATTAAAGATTTATTTGTTTTTATTTAAAGAAGAAAAGAGGTTTTGGTCAAATTAATTTGGTCTAATAATGTAGCGTGGAAATAGCATTCATCTTAAGTAGTTTCTGTGAATCATCATCATATACATTCAACAGATACTTTTTCTGTTTGAATTTTCTTTATTTTTTAAAACCTAAATTGGAGTTTTATTATTCCTTTTAGAATATGTTAAGTGACATATTTCTTTTCTTTTTTCTTTTTAGGGATAAGTGACATATTCCTAAAATTAGTGATATAATTAAGTACACATTAACTATACAATTAAACTCATAATAATGAGATTTTTTTTATTTCTTTAAATAAAGATTGAAGAGGATCTTTTTATTTATGAATATCCAATGTTTTTTGTGTGAAATGTGTTTTAATGTAACAGGATCTCTCCCCTCATTTACACCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAGAGGATCTCTAATCATATTTACTATTTTTTAATTATATATATGGACTCACCAGAAATAATGATATTTTAGCATGACTTGAAAAACATAAGGCACATGTTATTATATTTAAACAAGTATTAGTATAGGTGAATGAAGTTTCTCCAATCCCTTTCAGAAATTGAAGGCTAATAAATTATTAACTACTTTGTAGTATTATTAAACTAATTATTTTTTATGAAATTAAATATATTTTTGTGCCTCATGGTTCAGTTGTGGATTGTGGACCTTGACTTTGAAAAGTGAACGTGTGTGTTTTATTGTGCGGCGTGTGTTGAATTGAATTGTTTGCTTTTTGTGATGAGTATGAAATGAGTTGGCAACAAGTGTCACATTGCATGTATCAATCTCAACAAGTAAGCAACTTGATATGCCAGTTCAAGTCATGCTACTTCTAGCAACATTTTTGTGCTTTTTAAGTTGCAAAAATCTTGGAATCATGTGACAGAGGGAACAATTTTGTCTCATAATATAGATTATTGGTCCCACCTAGCTTAAGGACAATGTGGTTGGCAAGACATTGAGTCATATATTGTTTGCATCTGGTATTTTTGGATAAAGAGTTAATCCATTTCTAATTAGAGGTTTAATTATTTAAATTTTTATCATAATATTTGTTTAATATTGATATATTAAATAGATATTGTTGTTCCACCCCACATGGTTGATGTACATTGTGGTTGGCTTTCTGTCATAAAAATTGGGAAGTAGTGTTTAGAGGTTAATGTTACTATTTTAGACAAAAATGGTTTAAGTACTAGTTTGAATTTTTACCATTTCTAACAAGAGTTTTCATTCCTTCAAAAAAAAAAAAAAAAACAAGAGTTTTCATTATTTCATTTGCATCATAATGTTTGTATTCATATATTATATATAATGTTGGTCCCACTTCCACCTAGCTGATGTACAATGTGGTTGGCATTGTAACATAGAAATTGGAAACTAGTGTTTAAAAATTAGATTTTGGTATTTTGGACAAAAGGGTTCATTAGTAGTTTGGATTTTTACCATTTCTTACTAGAGTTTTAATTATTTCATTTTCAAAGTGTTTATACTTTATACTAAATTGGTACACCATGTGAAGAACCAATTTTTTTTGCATTTCACATATTCATGCAAACAACACATTCGTAGTCTTTAGATCAAGATCGAACGATTCATATTGAAATGTATGGTTCAATGCAAATATCACTGCATAACTCGATCCAACTGCTATGATTGTGCTGACCGCATGAAAGAGTCAAATTTTCCAACGACATGCAATTCGATTTCCAAAGTGATTCTTATGTTTATATTTGTATTTGATTTTGCTTCTAATTTATTGATTTTTTATGTGATAGGTGAGTTTTGTGATTGTGAAAATCACTGCAATATGTCCAATGGCATTACTAGAAAGAATTAGTGACCTTCTAAGATGGCAACAAAAAGACCCTTCATTCAATTTACCATGGAAACAAGATTCTCTACCAATTTTCTCAGAATCAAGTCCATTATACCACACTACAAAAAAACCAGAACCATTAACACCACAAGAAGAAAGTGATTTTCAACTAGCAAATCAAAGATTACAACAACTTTGTAAAAAATGTGTTGAAGCAAACATGCCATTATTGGTTGATGCAGAACACACTACTGTTCAACCAGCTATTGATTACTTCACATACTCTTCAGCAATTATGCATAACAAAGATGATAATCCAATTGTGTTTGGAACAATTCAAACTTATTTGAAAGATGCTAAGGAGAGATTGTTTCTTGCAACAAAAGCTGCTGAAGAAATTGGAATTCCTATGGGATTTAAGTTGGTTAGAGGTGCTTATATGTCTACAGAAAGTACATTGGCTGAGTCTTTTGGATCTAGGTCACCAATTCATGATACTATTGAAGATACACATAATTGCTTCAATGATTGTTCATCTTATTTGCTTGAGAAGTTTGCTAATGGAAAAGGATCTGTTGTTCTTGCCACACACAACATTGAATCAGGTAATAATTTTATAATTTTTATACTTTATAGAATAATGTTAGATAATATTTTAAGAAAATGTAATAATATGTGTCGGTGTCGTTGCATGTCGCATACTAATAAATATTTTGTCGACGCATGTCGGACACTAAAAATATTTTAAGAAAATATTTAATATGTGTCGGTGTCGTCACATGTCGGACATCAGATCCATTAATATGAAGTGTTGATCTTTAGATTGAATTGTATGTAGCATTGACACATTCATAGACAACATATATGATATTGACACTGACACGTAGACATTGAAAATATTTCAAGAAAATGTAAGAGAATAAATGTAATCACATATGTGAATATCAAACATTGACCCACATCGATCAACCAGACACGCCTTGAATCTGAAATATATGCATTACATGTAGCAATAAGAATACTAGAATAACCAAGATTTCATTTAATGTATCTAAAACATATTGATTTTTTTTTTTTTTTTGGTTGCGTAGGGAAATTGGCTGCAGCAAAAGCATATGAAATTGGAATGGGAAAAGTGAACCACAAGCTTGAATTTGCACAACTATGTGGAATGTCAGATGCACTTTCATTTGGTTTGAGCAATGCAGGGTTTAGAGTTAGCAAGTATATGCCATTTGGACCGGTTGAGATGGTTATGCCTTATCTATTGAGAAGAGCTGAAGAAAATAGAGGTCTTTTGGCTGCTTCTGGATTTGATAGGCAACTCATAAGGTGACAAAAATAAAAATATTTACTAACCTTTTTAATTATTTTGAGACATGAAAATTATTTATTTTATGTTTTTCTCATAGTGATTTTTTTCTTTTTGTACAGAAAAGAGCTTGGAAGGAGGCTTAAAGCTGCAATATTTTAA
Protein sequence

>MS.gene37117.t1

MAVTKRTFYEHFCAGEDAIAAGKSIRSVNEAGLRGMLVYGVEDAHDNDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMALLERISDLLRWQQKDPSFNLPWKQDSLPIFSESSPLYHTTKKPEPLTPQEESDFQLANQRLQQLCKKCVEANMPLLVDAEHTTVQPAIDYFTYSSAIMHNKDDNPIVFGTIQTYLKDAKERLFLATKAAEEIGIPMGFKLVRGAYMSTESTLAESFGSRSPIHDTIEDTHNCFNDCSSYLLEKFANGKGSVVLATHNIESGKLAAAKAYEIGMGKVNHKLEFAQLCGMSDALSFGLSNAGFRVSKYMPFGPVEMVMPYLLRRAEENRGLLAASGFDRQLIRKELGRRLKAAIF