Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37229.t1 | XP_013457661.1 | 98 | 300 | 4 | 1 | 1 | 300 | 1 | 298 | 1.80E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37229.t1 | Q9LQ04 | 82.3 | 293 | 52 | 0 | 7 | 299 | 6 | 298 | 9.0e-143 | 507.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37229.t1 | I3SMF8 | 98.0 | 300 | 4 | 1 | 1 | 300 | 1 | 298 | 1.3e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057299 | MS.gene37229 | 0.995898 | 4.19E-221 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37229.t1 | MTR_4g102550 | 98.000 | 300 | 4 | 1 | 1 | 300 | 1 | 298 | 0.0 | 603 |
| MS.gene37229.t1 | MTR_2g073240 | 81.724 | 290 | 53 | 0 | 8 | 297 | 391 | 680 | 8.79e-176 | 502 |
| MS.gene37229.t1 | MTR_0034s0060 | 82.807 | 285 | 49 | 0 | 13 | 297 | 513 | 797 | 3.65e-175 | 504 |
| MS.gene37229.t1 | MTR_1g009600 | 78.873 | 284 | 60 | 0 | 14 | 297 | 371 | 654 | 3.57e-167 | 479 |
| MS.gene37229.t1 | MTR_3g452330 | 65.217 | 92 | 32 | 0 | 14 | 105 | 147 | 238 | 2.50e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37229.t1 | AT1G63000 | 83.566 | 286 | 47 | 0 | 14 | 299 | 13 | 298 | 0.0 | 512 |
| MS.gene37229.t1 | AT1G78570 | 80.808 | 297 | 52 | 2 | 6 | 297 | 372 | 668 | 9.40e-177 | 504 |
| MS.gene37229.t1 | AT1G53500 | 78.621 | 290 | 62 | 0 | 8 | 297 | 377 | 666 | 1.41e-157 | 455 |
| MS.gene37229.t1 | AT3G14790 | 78.157 | 293 | 64 | 0 | 5 | 297 | 371 | 663 | 2.17e-157 | 454 |
| MS.gene37229.t1 | AT3G14790 | 78.157 | 293 | 64 | 0 | 5 | 297 | 374 | 666 | 2.65e-157 | 454 |
Find 90 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCCGGGATTGGGTTTA+AGG | 0.168150 | 8.3:-19179529 | MS.gene37229:CDS |
| TATGATGATCTTCATCTTCT+TGG | 0.210029 | 8.3:-19179549 | MS.gene37229:CDS |
| CATCTTCTTGGATCCGGGAT+TGG | 0.251157 | 8.3:-19179537 | MS.gene37229:CDS |
| TCTAAAATGGTCATCGAGTT+TGG | 0.262726 | 8.3:+19178643 | None:intergenic |
| TCAAGCTCATTGTTACTTCT+TGG | 0.275443 | 8.3:+19178442 | None:intergenic |
| ACATACCATAGCCTTGGTTT+TGG | 0.309450 | 8.3:+19179470 | None:intergenic |
| CAAGCTCATTGTTACTTCTT+GGG | 0.312171 | 8.3:+19178443 | None:intergenic |
| CAAGCTTTAACCTTCTGATT+TGG | 0.317551 | 8.3:+19178346 | None:intergenic |
| GGGAAGAAGTTCATCTAAAA+TGG | 0.318463 | 8.3:+19178630 | None:intergenic |
| CCCCTCAAGTTTCTCATATA+CGG | 0.329932 | 8.3:-19179870 | MS.gene37229:CDS |
| ATCTTCTTGGATCCGGGATT+GGG | 0.332868 | 8.3:-19179536 | MS.gene37229:CDS |
| TTTAATGCTGCTGGTGTTAC+GGG | 0.336811 | 8.3:-19179711 | MS.gene37229:CDS |
| CTCAAGAGTGAAGTTCTTCC+AGG | 0.342280 | 8.3:+19178489 | None:intergenic |
| AGAGAAACCTCACTGGAATC+TGG | 0.362925 | 8.3:-19178588 | MS.gene37229:CDS |
| TTGGATAAATCAGATGAAAT+AGG | 0.363426 | 8.3:+19178718 | None:intergenic |
| TCCTTGATAGACAATAGTTC+TGG | 0.368427 | 8.3:+19178394 | None:intergenic |
| GAAGATACTCCTAATTTCAT+TGG | 0.368560 | 8.3:-19179504 | MS.gene37229:CDS |
| TCTTGAGAATCGATCTTCAT+TGG | 0.371797 | 8.3:-19179769 | MS.gene37229:CDS |
| TATCTACAACCTTCTCATAT+CGG | 0.390642 | 8.3:+19178668 | None:intergenic |
| GTTTAATGCTGCTGGTGTTA+CGG | 0.392378 | 8.3:-19179712 | MS.gene37229:CDS |
| GATCTTCATCTTCTTGGATC+CGG | 0.397535 | 8.3:-19179543 | MS.gene37229:CDS |
| CGTATTCGAATTGGATCCCT+TGG | 0.400642 | 8.3:+19179802 | None:intergenic |
| GACCCGACCCGTATTCGAAT+TGG | 0.406229 | 8.3:+19179793 | None:intergenic |
| TCGGAGGAGGAGGATGGTGC+TGG | 0.407640 | 8.3:+19179897 | None:intergenic |
| ATCTTCATCTTCTTGGATCC+GGG | 0.408563 | 8.3:-19179542 | MS.gene37229:CDS |
| ATCTGGAACTTCACAAATCC+TGG | 0.419713 | 8.3:-19178571 | MS.gene37229:CDS |
| CTTTGCCATCTCAATTGAGA+TGG | 0.421086 | 8.3:+19178609 | None:intergenic |
| TCCAGAACTATTGTCTATCA+AGG | 0.428839 | 8.3:-19178395 | MS.gene37229:CDS |
| GGCTGGATAGGAGGCCTCTT+AGG | 0.432855 | 8.3:-19179840 | MS.gene37229:CDS |
| CAAGGGATCCAATTCGAATA+CGG | 0.434923 | 8.3:-19179801 | MS.gene37229:CDS |
| GAGGGGAGTGTCGGAGGAGG+AGG | 0.437559 | 8.3:+19179887 | None:intergenic |
| GTCTCACACCAGTCCACGTT+GGG | 0.462588 | 8.3:+19179684 | None:intergenic |
| ATCTACAACCTTCTCATATC+GGG | 0.463578 | 8.3:+19178669 | None:intergenic |
| TCATATACGGCCGCACCGGC+TGG | 0.469750 | 8.3:-19179857 | MS.gene37229:CDS |
| TCATTGTGGCTAACAACTCC+AGG | 0.479957 | 8.3:+19178553 | None:intergenic |
| TTACTCCAAAACCAAGGCTA+TGG | 0.480519 | 8.3:-19179475 | MS.gene37229:intron |
| TTCTTCCTTAAACCCAATCC+CGG | 0.488118 | 8.3:+19179524 | None:intergenic |
| GGCCGCACCGGCTGGATAGG+AGG | 0.489760 | 8.3:-19179849 | MS.gene37229:CDS |
| AAGCTCATTGTTACTTCTTG+GGG | 0.490161 | 8.3:+19178444 | None:intergenic |
| CGGTACAGAGTTTGCCTAAG+AGG | 0.492780 | 8.3:+19179826 | None:intergenic |
| CGGGTCGACCCAACGTGGAC+TGG | 0.494677 | 8.3:-19179692 | MS.gene37229:CDS |
| TAACAATAAGTCCACGTTCA+CGG | 0.500654 | 8.3:+19179601 | None:intergenic |
| CTATCCGTGCTAATGTGGTT+GGG | 0.501072 | 8.3:-19179647 | MS.gene37229:CDS |
| ATCCAATTCGAATACGGGTC+GGG | 0.505835 | 8.3:-19179795 | MS.gene37229:CDS |
| GGCAAACTCTGTACCGCCCA+AGG | 0.511999 | 8.3:-19179819 | MS.gene37229:CDS |
| GCCGTATATGAGAAACTTGA+GGG | 0.516441 | 8.3:+19179869 | None:intergenic |
| CTTGAGGGGAGTGTCGGAGG+AGG | 0.523463 | 8.3:+19179884 | None:intergenic |
| CACTCTTGAGGAACAAGCTA+AGG | 0.523587 | 8.3:-19178476 | MS.gene37229:CDS |
| CGGAGGAGGAGGATGGTGCT+GGG | 0.526896 | 8.3:+19179898 | None:intergenic |
| AATGTAACATACCATAGCCT+TGG | 0.526904 | 8.3:+19179464 | None:intergenic |
| AGTAACAATGAGCTTGATGC+GGG | 0.528741 | 8.3:-19178436 | MS.gene37229:CDS |
| GTATTCGAATTGGATCCCTT+GGG | 0.529711 | 8.3:+19179803 | None:intergenic |
| TTTGCCATCTCAATTGAGAT+GGG | 0.537632 | 8.3:+19178610 | None:intergenic |
| AAGGGATCCAATTCGAATAC+GGG | 0.542692 | 8.3:-19179800 | MS.gene37229:CDS |
| TGTGATGAAATTGCGAGGGT+TGG | 0.546615 | 8.3:+19178699 | None:intergenic |
| TTTCTCATATACGGCCGCAC+CGG | 0.558062 | 8.3:-19179861 | MS.gene37229:CDS |
| TCTTCCCATCTCAATTGAGA+TGG | 0.561970 | 8.3:-19178614 | MS.gene37229:CDS |
| ATATCGATTCAAGCTTCACC+TGG | 0.568911 | 8.3:-19178507 | MS.gene37229:CDS |
| TAAGAGGCCTCCTATCCAGC+CGG | 0.572784 | 8.3:+19179842 | None:intergenic |
| GGAGTGTCGGAGGAGGAGGA+TGG | 0.576494 | 8.3:+19179891 | None:intergenic |
| AAACTTGAGGGGAGTGTCGG+AGG | 0.580469 | 8.3:+19179881 | None:intergenic |
| ACTATCCGTGCTAATGTGGT+TGG | 0.582347 | 8.3:-19179648 | MS.gene37229:CDS |
| GCAGCATTAAACACGTGTGT+TGG | 0.584742 | 8.3:+19179723 | None:intergenic |
| TACGGCCGCACCGGCTGGAT+AGG | 0.586868 | 8.3:-19179852 | MS.gene37229:CDS |
| GAGAAACTTGAGGGGAGTGT+CGG | 0.586872 | 8.3:+19179878 | None:intergenic |
| CTGGAAGAACTTCACTCTTG+AGG | 0.589081 | 8.3:-19178488 | MS.gene37229:CDS |
| GGCCGTATATGAGAAACTTG+AGG | 0.591913 | 8.3:+19179868 | None:intergenic |
| AATAGGCATCCTCACTCTCA+AGG | 0.595727 | 8.3:+19178735 | None:intergenic |
| TGATGCGGGAAAATTGAAGA+AGG | 0.598610 | 8.3:-19178422 | MS.gene37229:CDS |
| TGTCTTCAAGCCAAATCAGA+AGG | 0.603264 | 8.3:-19178356 | MS.gene37229:CDS |
| ATGGCAAAGAGAAACCTCAC+TGG | 0.606695 | 8.3:-19178595 | MS.gene37229:CDS |
| GCTGACGTGTGCCGTGAACG+TGG | 0.619625 | 8.3:-19179612 | MS.gene37229:CDS |
| AAAGATCACCCGATATGAGA+AGG | 0.619965 | 8.3:-19178677 | MS.gene37229:CDS |
| TTCGAATTGGATCCCTTGGG+CGG | 0.621824 | 8.3:+19179806 | None:intergenic |
| GCAAACTCTGTACCGCCCAA+GGG | 0.622614 | 8.3:-19179818 | MS.gene37229:CDS |
| ACACACGTGTTTAATGCTGC+TGG | 0.626893 | 8.3:-19179720 | MS.gene37229:CDS |
| ATCTTTGTGATGAAATTGCG+AGG | 0.632297 | 8.3:+19178694 | None:intergenic |
| GGCCTCCTATCCAGCCGGTG+CGG | 0.634921 | 8.3:+19179847 | None:intergenic |
| GATCCAATTCGAATACGGGT+CGG | 0.635111 | 8.3:-19179796 | MS.gene37229:CDS |
| AAGTAACAATGAGCTTGATG+CGG | 0.635352 | 8.3:-19178437 | MS.gene37229:CDS |
| ATGTATGCACCTTGAGAGTG+AGG | 0.639312 | 8.3:-19178744 | MS.gene37229:CDS |
| TGAAACTATCCGTGCTAATG+TGG | 0.665772 | 8.3:-19179652 | MS.gene37229:CDS |
| GAGTCCCAACCACATTAGCA+CGG | 0.686328 | 8.3:+19179643 | None:intergenic |
| ACATTTGTAAGATTTCATTG+TGG | 0.688248 | 8.3:+19178539 | None:intergenic |
| AGTCTCACACCAGTCCACGT+TGG | 0.693140 | 8.3:+19179683 | None:intergenic |
| CACAGGTAGAGGATCTGCTG+AGG | 0.704068 | 8.3:-19178777 | MS.gene37229:intron |
| TGTTACGGGTCGACCCAACG+TGG | 0.704086 | 8.3:-19179697 | MS.gene37229:CDS |
| TGAAGTTCCAGATTCCAGTG+AGG | 0.720062 | 8.3:+19178581 | None:intergenic |
| TCTTTGTGATGAAATTGCGA+GGG | 0.720478 | 8.3:+19178695 | None:intergenic |
| CCGTATATGAGAAACTTGAG+GGG | 0.728448 | 8.3:+19179870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATATAAAACAGATCTA+AGG | + | chr8.3:19178982-19179001 | None:intergenic | 15.0% |
| !! | ATATCAAACAAATCAAAACA+CGG | + | chr8.3:19179087-19179106 | None:intergenic | 20.0% |
| !! | TAAAAAGAACCAATGAAATT+AGG | + | chr8.3:19178759-19178778 | None:intergenic | 20.0% |
| !!! | ATTGTTATTAATTTTGCTAC+TGG | - | chr8.3:19178666-19178685 | MS.gene37229:CDS | 20.0% |
| !!! | TGTTTAAGATTGATGTTTTT+TGG | - | chr8.3:19178835-19178854 | MS.gene37229:intron | 20.0% |
| ! | ACATTAACAAAAAGAAAGCA+AGG | - | chr8.3:19179395-19179414 | MS.gene37229:intron | 25.0% |
| ! | ACATTTGTAAGATTTCATTG+TGG | + | chr8.3:19179715-19179734 | None:intergenic | 25.0% |
| ! | TTGGATAAATCAGATGAAAT+AGG | + | chr8.3:19179536-19179555 | None:intergenic | 25.0% |
| !! | AAAAACATTAGTCTCTTAAG+CGG | - | chr8.3:19179321-19179340 | MS.gene37229:intron | 25.0% |
| !! | CTTAAGAGACTAATGTTTTT+CGG | + | chr8.3:19179321-19179340 | None:intergenic | 25.0% |
| !! | TATGGTATGTTACATTGATT+TGG | - | chr8.3:19178794-19178813 | MS.gene37229:intron | 25.0% |
| !!! | ATGCTGATTTGTTGAATTAT+TGG | - | chr8.3:19178910-19178929 | MS.gene37229:intron | 25.0% |
| !!! | GATTTGTTGAATTATTGGTT+AGG | - | chr8.3:19178915-19178934 | MS.gene37229:intron | 25.0% |
| !!! | TTACTTTTATATGCAGTAGT+TGG | - | chr8.3:19179114-19179133 | MS.gene37229:intron | 25.0% |
| GAAGATACTCCTAATTTCAT+TGG | - | chr8.3:19178747-19178766 | MS.gene37229:CDS | 30.0% | |
| GTTCACAAAAAAGGAAAACA+AGG | + | chr8.3:19179455-19179474 | None:intergenic | 30.0% | |
| TAGTCATTCGTTTGTAACAT+TGG | + | chr8.3:19179268-19179287 | None:intergenic | 30.0% | |
| TATCTACAACCTTCTCATAT+CGG | + | chr8.3:19179586-19179605 | None:intergenic | 30.0% | |
| TATGATGATCTTCATCTTCT+TGG | - | chr8.3:19178702-19178721 | MS.gene37229:CDS | 30.0% | |
| TTAACAAAAAGAAAGCAAGG+TGG | - | chr8.3:19179398-19179417 | MS.gene37229:intron | 30.0% | |
| ! | TTCTTTTTACTCCAAAACCA+AGG | - | chr8.3:19178770-19178789 | MS.gene37229:CDS | 30.0% |
| !! | TTTTCCTTTTTTGTGAACAC+AGG | - | chr8.3:19179457-19179476 | MS.gene37229:intron | 30.0% |
| AAGTAACAATGAGCTTGATG+CGG | - | chr8.3:19179814-19179833 | MS.gene37229:CDS | 35.0% | |
| AATGTAACATACCATAGCCT+TGG | + | chr8.3:19178790-19178809 | None:intergenic | 35.0% | |
| ATCTACAACCTTCTCATATC+GGG | + | chr8.3:19179585-19179604 | None:intergenic | 35.0% | |
| ATCTTTGTGATGAAATTGCG+AGG | + | chr8.3:19179560-19179579 | None:intergenic | 35.0% | |
| GGGAAGAAGTTCATCTAAAA+TGG | + | chr8.3:19179624-19179643 | None:intergenic | 35.0% | |
| GTTACAAACGAATGACTACA+GGG | - | chr8.3:19179270-19179289 | MS.gene37229:intron | 35.0% | |
| TAACAATAAGTCCACGTTCA+CGG | + | chr8.3:19178653-19178672 | None:intergenic | 35.0% | |
| TCCAGAACTATTGTCTATCA+AGG | - | chr8.3:19179856-19179875 | MS.gene37229:CDS | 35.0% | |
| TCCTTGATAGACAATAGTTC+TGG | + | chr8.3:19179860-19179879 | None:intergenic | 35.0% | |
| TCTACCTGTGTTCACAAAAA+AGG | + | chr8.3:19179464-19179483 | None:intergenic | 35.0% | |
| TCTTGAGAATCGATCTTCAT+TGG | - | chr8.3:19178482-19178501 | MS.gene37229:CDS | 35.0% | |
| TCTTTGTGATGAAATTGCGA+GGG | + | chr8.3:19179559-19179578 | None:intergenic | 35.0% | |
| TGTTACAAACGAATGACTAC+AGG | - | chr8.3:19179269-19179288 | MS.gene37229:intron | 35.0% | |
| TTTGCCATCTCAATTGAGAT+GGG | + | chr8.3:19179644-19179663 | None:intergenic | 35.0% | |
| ! | AAGCTCATTGTTACTTCTTG+GGG | + | chr8.3:19179810-19179829 | None:intergenic | 35.0% |
| ! | AGAAAGCAAGGTGGTATTTT+AGG | - | chr8.3:19179407-19179426 | MS.gene37229:intron | 35.0% |
| ! | CAAGCTCATTGTTACTTCTT+GGG | + | chr8.3:19179811-19179830 | None:intergenic | 35.0% |
| ! | CAAGCTTTAACCTTCTGATT+TGG | + | chr8.3:19179908-19179927 | None:intergenic | 35.0% |
| ! | TCAAGCTCATTGTTACTTCT+TGG | + | chr8.3:19179812-19179831 | None:intergenic | 35.0% |
| ! | TCTAAAATGGTCATCGAGTT+TGG | + | chr8.3:19179611-19179630 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGAACACAGGTAG+AGG | - | chr8.3:19179463-19179482 | MS.gene37229:intron | 35.0% |
| AAAGATCACCCGATATGAGA+AGG | - | chr8.3:19179574-19179593 | MS.gene37229:CDS | 40.0% | |
| AAGGGATCCAATTCGAATAC+GGG | - | chr8.3:19178451-19178470 | MS.gene37229:CDS | 40.0% | |
| AGTAACAATGAGCTTGATGC+GGG | - | chr8.3:19179815-19179834 | MS.gene37229:CDS | 40.0% | |
| ATCTTCATCTTCTTGGATCC+GGG | - | chr8.3:19178709-19178728 | MS.gene37229:CDS | 40.0% | |
| CAAGGGATCCAATTCGAATA+CGG | - | chr8.3:19178450-19178469 | MS.gene37229:CDS | 40.0% | |
| CCCCTCAAGTTTCTCATATA+CGG | - | chr8.3:19178381-19178400 | MS.gene37229:CDS | 40.0% | |
| CCGTATATGAGAAACTTGAG+GGG | + | chr8.3:19178384-19178403 | None:intergenic | 40.0% | |
| CTTTGCCATCTCAATTGAGA+TGG | + | chr8.3:19179645-19179664 | None:intergenic | 40.0% | |
| GATCTTCATCTTCTTGGATC+CGG | - | chr8.3:19178708-19178727 | MS.gene37229:CDS | 40.0% | |
| GCCGTATATGAGAAACTTGA+GGG | + | chr8.3:19178385-19178404 | None:intergenic | 40.0% | |
| GTATTCGAATTGGATCCCTT+GGG | + | chr8.3:19178451-19178470 | None:intergenic | 40.0% | |
| TCTTCCCATCTCAATTGAGA+TGG | - | chr8.3:19179637-19179656 | MS.gene37229:CDS | 40.0% | |
| TGAAACTATCCGTGCTAATG+TGG | - | chr8.3:19178599-19178618 | MS.gene37229:CDS | 40.0% | |
| TGATGCGGGAAAATTGAAGA+AGG | - | chr8.3:19179829-19179848 | MS.gene37229:CDS | 40.0% | |
| TGTCTTCAAGCCAAATCAGA+AGG | - | chr8.3:19179895-19179914 | MS.gene37229:CDS | 40.0% | |
| TTACTCCAAAACCAAGGCTA+TGG | - | chr8.3:19178776-19178795 | MS.gene37229:intron | 40.0% | |
| TTCTTCCTTAAACCCAATCC+CGG | + | chr8.3:19178730-19178749 | None:intergenic | 40.0% | |
| ! | ATCTGGAACTTCACAAATCC+TGG | - | chr8.3:19179680-19179699 | MS.gene37229:CDS | 40.0% |
| ! | GTTTAATGCTGCTGGTGTTA+CGG | - | chr8.3:19178539-19178558 | MS.gene37229:CDS | 40.0% |
| !! | ACATACCATAGCCTTGGTTT+TGG | + | chr8.3:19178784-19178803 | None:intergenic | 40.0% |
| !! | ATATCGATTCAAGCTTCACC+TGG | - | chr8.3:19179744-19179763 | MS.gene37229:CDS | 40.0% |
| !! | TTTAATGCTGCTGGTGTTAC+GGG | - | chr8.3:19178540-19178559 | MS.gene37229:CDS | 40.0% |
| AATAGGCATCCTCACTCTCA+AGG | + | chr8.3:19179519-19179538 | None:intergenic | 45.0% | |
| ACACACGTGTTTAATGCTGC+TGG | - | chr8.3:19178531-19178550 | MS.gene37229:CDS | 45.0% | |
| ACTATCCGTGCTAATGTGGT+TGG | - | chr8.3:19178603-19178622 | MS.gene37229:CDS | 45.0% | |
| AGAGAAACCTCACTGGAATC+TGG | - | chr8.3:19179663-19179682 | MS.gene37229:CDS | 45.0% | |
| ATCCAATTCGAATACGGGTC+GGG | - | chr8.3:19178456-19178475 | MS.gene37229:CDS | 45.0% | |
| ATCTTCTTGGATCCGGGATT+GGG | - | chr8.3:19178715-19178734 | MS.gene37229:CDS | 45.0% | |
| ATGGCAAAGAGAAACCTCAC+TGG | - | chr8.3:19179656-19179675 | MS.gene37229:CDS | 45.0% | |
| ATGTATGCACCTTGAGAGTG+AGG | - | chr8.3:19179507-19179526 | MS.gene37229:CDS | 45.0% | |
| CACTCTTGAGGAACAAGCTA+AGG | - | chr8.3:19179775-19179794 | MS.gene37229:CDS | 45.0% | |
| CGTATTCGAATTGGATCCCT+TGG | + | chr8.3:19178452-19178471 | None:intergenic | 45.0% | |
| CTATCCGTGCTAATGTGGTT+GGG | - | chr8.3:19178604-19178623 | MS.gene37229:CDS | 45.0% | |
| CTCAAGAGTGAAGTTCTTCC+AGG | + | chr8.3:19179765-19179784 | None:intergenic | 45.0% | |
| CTGGAAGAACTTCACTCTTG+AGG | - | chr8.3:19179763-19179782 | MS.gene37229:CDS | 45.0% | |
| GATCCAATTCGAATACGGGT+CGG | - | chr8.3:19178455-19178474 | MS.gene37229:CDS | 45.0% | |
| GCAGCATTAAACACGTGTGT+TGG | + | chr8.3:19178531-19178550 | None:intergenic | 45.0% | |
| GGCCGTATATGAGAAACTTG+AGG | + | chr8.3:19178386-19178405 | None:intergenic | 45.0% | |
| TCATTGTGGCTAACAACTCC+AGG | + | chr8.3:19179701-19179720 | None:intergenic | 45.0% | |
| TGAAGTTCCAGATTCCAGTG+AGG | + | chr8.3:19179673-19179692 | None:intergenic | 45.0% | |
| TGATCTTGATCCGACAACCA+AGG | + | chr8.3:19179145-19179164 | None:intergenic | 45.0% | |
| TGTGATGAAATTGCGAGGGT+TGG | + | chr8.3:19179555-19179574 | None:intergenic | 45.0% | |
| ! | GTTGGAGTATCCTTGGTTGT+CGG | - | chr8.3:19179132-19179151 | MS.gene37229:intron | 45.0% |
| ! | TGCAGTAGTTGGAGTATCCT+TGG | - | chr8.3:19179125-19179144 | MS.gene37229:intron | 45.0% |
| CATCTTCTTGGATCCGGGAT+TGG | - | chr8.3:19178714-19178733 | MS.gene37229:CDS | 50.0% | |
| CGGTACAGAGTTTGCCTAAG+AGG | + | chr8.3:19178428-19178447 | None:intergenic | 50.0% | |
| GAGTCCCAACCACATTAGCA+CGG | + | chr8.3:19178611-19178630 | None:intergenic | 50.0% | |
| TGGATCCGGGATTGGGTTTA+AGG | - | chr8.3:19178722-19178741 | MS.gene37229:CDS | 50.0% | |
| TTCGAATTGGATCCCTTGGG+CGG | + | chr8.3:19178448-19178467 | None:intergenic | 50.0% | |
| TTTCTCATATACGGCCGCAC+CGG | - | chr8.3:19178390-19178409 | MS.gene37229:CDS | 50.0% | |
| ! | GAGAAACTTGAGGGGAGTGT+CGG | + | chr8.3:19178376-19178395 | None:intergenic | 50.0% |
| AGTCTCACACCAGTCCACGT+TGG | + | chr8.3:19178571-19178590 | None:intergenic | 55.0% | |
| CACAGGTAGAGGATCTGCTG+AGG | - | chr8.3:19179474-19179493 | MS.gene37229:intron | 55.0% | |
| GACCCGACCCGTATTCGAAT+TGG | + | chr8.3:19178461-19178480 | None:intergenic | 55.0% | |
| GCAAACTCTGTACCGCCCAA+GGG | - | chr8.3:19178433-19178452 | MS.gene37229:CDS | 55.0% | |
| GTCTCACACCAGTCCACGTT+GGG | + | chr8.3:19178570-19178589 | None:intergenic | 55.0% | |
| TAAGAGGCCTCCTATCCAGC+CGG | + | chr8.3:19178412-19178431 | None:intergenic | 55.0% | |
| !! | AAACTTGAGGGGAGTGTCGG+AGG | + | chr8.3:19178373-19178392 | None:intergenic | 55.0% |
| GGCAAACTCTGTACCGCCCA+AGG | - | chr8.3:19178432-19178451 | MS.gene37229:CDS | 60.0% | |
| GGCTGGATAGGAGGCCTCTT+AGG | - | chr8.3:19178411-19178430 | MS.gene37229:CDS | 60.0% | |
| TGTTACGGGTCGACCCAACG+TGG | - | chr8.3:19178554-19178573 | MS.gene37229:CDS | 60.0% | |
| CGGAGGAGGAGGATGGTGCT+GGG | + | chr8.3:19178356-19178375 | None:intergenic | 65.0% | |
| GCTGACGTGTGCCGTGAACG+TGG | - | chr8.3:19178639-19178658 | MS.gene37229:CDS | 65.0% | |
| TCGGAGGAGGAGGATGGTGC+TGG | + | chr8.3:19178357-19178376 | None:intergenic | 65.0% | |
| ! | TCATATACGGCCGCACCGGC+TGG | - | chr8.3:19178394-19178413 | MS.gene37229:CDS | 65.0% |
| !! | CTTGAGGGGAGTGTCGGAGG+AGG | + | chr8.3:19178370-19178389 | None:intergenic | 65.0% |
| !! | GGAGTGTCGGAGGAGGAGGA+TGG | + | chr8.3:19178363-19178382 | None:intergenic | 65.0% |
| CGGGTCGACCCAACGTGGAC+TGG | - | chr8.3:19178559-19178578 | MS.gene37229:CDS | 70.0% | |
| GGCCTCCTATCCAGCCGGTG+CGG | + | chr8.3:19178407-19178426 | None:intergenic | 70.0% | |
| !! | GAGGGGAGTGTCGGAGGAGG+AGG | + | chr8.3:19178367-19178386 | None:intergenic | 70.0% |
| !! | TACGGCCGCACCGGCTGGAT+AGG | - | chr8.3:19178399-19178418 | MS.gene37229:CDS | 70.0% |
| !! | GGCCGCACCGGCTGGATAGG+AGG | - | chr8.3:19178402-19178421 | MS.gene37229:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19178345 | 19179928 | 19178345 | ID=MS.gene37229 |
| chr8.3 | mRNA | 19178345 | 19179928 | 19178345 | ID=MS.gene37229.t1;Parent=MS.gene37229 |
| chr8.3 | exon | 19179476 | 19179928 | 19179476 | ID=MS.gene37229.t1.exon1;Parent=MS.gene37229.t1 |
| chr8.3 | CDS | 19179476 | 19179928 | 19179476 | ID=cds.MS.gene37229.t1;Parent=MS.gene37229.t1 |
| chr8.3 | exon | 19178345 | 19178794 | 19178345 | ID=MS.gene37229.t1.exon2;Parent=MS.gene37229.t1 |
| chr8.3 | CDS | 19178345 | 19178794 | 19178345 | ID=cds.MS.gene37229.t1;Parent=MS.gene37229.t1 |
| Gene Sequence |
| Protein sequence |
