Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057299.t1 | XP_013457661.1 | 98 | 297 | 4 | 1 | 1 | 297 | 1 | 295 | 5.70E-165 | 590.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057299.t1 | Q9LQ04 | 82.8 | 291 | 50 | 0 | 7 | 297 | 6 | 296 | 8.9e-143 | 507.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057299.t1 | I3SMF8 | 98.0 | 297 | 4 | 1 | 1 | 297 | 1 | 295 | 4.1e-165 | 590.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057299 | MS.gene37229 | 0.995898 | 4.19E-221 | -1.69E-46 |
| MS.gene057299 | MS.gene62816 | 0.893645 | 5.18E-75 | -1.69E-46 |
| MS.gene057299 | MS.gene75019 | 0.825405 | 4.77E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057299.t1 | MTR_4g102550 | 97.980 | 297 | 4 | 1 | 1 | 297 | 1 | 295 | 0.0 | 597 |
| MS.gene057299.t1 | MTR_2g073240 | 81.724 | 290 | 53 | 0 | 8 | 297 | 391 | 680 | 8.99e-176 | 502 |
| MS.gene057299.t1 | MTR_0034s0060 | 82.807 | 285 | 49 | 0 | 13 | 297 | 513 | 797 | 3.49e-175 | 504 |
| MS.gene057299.t1 | MTR_1g009600 | 78.873 | 284 | 60 | 0 | 14 | 297 | 371 | 654 | 4.79e-167 | 479 |
| MS.gene057299.t1 | MTR_3g452330 | 65.217 | 92 | 32 | 0 | 14 | 105 | 147 | 238 | 2.64e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057299.t1 | AT1G63000 | 84.155 | 284 | 45 | 0 | 14 | 297 | 13 | 296 | 0.0 | 512 |
| MS.gene057299.t1 | AT1G78570 | 80.808 | 297 | 52 | 2 | 6 | 297 | 372 | 668 | 1.53e-176 | 503 |
| MS.gene057299.t1 | AT1G53500 | 78.621 | 290 | 62 | 0 | 8 | 297 | 377 | 666 | 2.23e-157 | 454 |
| MS.gene057299.t1 | AT3G14790 | 78.157 | 293 | 64 | 0 | 5 | 297 | 371 | 663 | 2.50e-157 | 454 |
| MS.gene057299.t1 | AT3G14790 | 78.157 | 293 | 64 | 0 | 5 | 297 | 374 | 666 | 2.54e-157 | 454 |
Find 90 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCCGGGATTGGGTTTA+AGG | 0.168150 | 8.4:-22488806 | MS.gene057299:CDS |
| TATGATGATCTTCATCTTCT+TGG | 0.210029 | 8.4:-22488826 | MS.gene057299:CDS |
| CATCTTCTTGGATCCGGGAT+TGG | 0.251157 | 8.4:-22488814 | MS.gene057299:CDS |
| TCTAAAATGGTCATCGAGTT+TGG | 0.262726 | 8.4:+22487924 | None:intergenic |
| TCAAGCTCATTGTTACTTCT+TGG | 0.275443 | 8.4:+22487723 | None:intergenic |
| ACATACCATAGCCTTGGTTT+TGG | 0.309450 | 8.4:+22488747 | None:intergenic |
| CAAGCTCATTGTTACTTCTT+GGG | 0.312171 | 8.4:+22487724 | None:intergenic |
| CAAGCTTTAACCTTCTGATT+TGG | 0.317551 | 8.4:+22487627 | None:intergenic |
| GGGAAGAAGTTCATCTAAAA+TGG | 0.318463 | 8.4:+22487911 | None:intergenic |
| CCCCTCAAGTTTCTCATATA+CGG | 0.329932 | 8.4:-22489147 | MS.gene057299:CDS |
| ATCTTCTTGGATCCGGGATT+GGG | 0.332868 | 8.4:-22488813 | MS.gene057299:CDS |
| TTTAATGCTGCTGGTGTTAC+GGG | 0.336811 | 8.4:-22488988 | MS.gene057299:CDS |
| CTCAAGAGTGAAGTTCTTCC+AGG | 0.342280 | 8.4:+22487770 | None:intergenic |
| AGAGAAACCTCACTGGAATC+TGG | 0.362925 | 8.4:-22487869 | MS.gene057299:CDS |
| TTGGATAAATCAGATGAAAT+AGG | 0.363426 | 8.4:+22487999 | None:intergenic |
| TCCTTGATAGACAATAGTTC+TGG | 0.368427 | 8.4:+22487675 | None:intergenic |
| GAAGATACTCCTAATTTCAT+TGG | 0.368560 | 8.4:-22488781 | MS.gene057299:CDS |
| TCTTGAGAATCGATCTTCAT+TGG | 0.371797 | 8.4:-22489046 | MS.gene057299:CDS |
| TATCTACAACCTTCTCATAT+CGG | 0.390642 | 8.4:+22487949 | None:intergenic |
| GTTTAATGCTGCTGGTGTTA+CGG | 0.392378 | 8.4:-22488989 | MS.gene057299:CDS |
| GATCTTCATCTTCTTGGATC+CGG | 0.397535 | 8.4:-22488820 | MS.gene057299:CDS |
| CGTATTCGAATTGGATCCCT+TGG | 0.400642 | 8.4:+22489079 | None:intergenic |
| GACCCGACCCGTATTCGAAT+TGG | 0.406229 | 8.4:+22489070 | None:intergenic |
| TCGGAGGAGGAGGATGGTGC+TGG | 0.407640 | 8.4:+22489174 | None:intergenic |
| ATCTTCATCTTCTTGGATCC+GGG | 0.408563 | 8.4:-22488819 | MS.gene057299:CDS |
| ATCTGGAACTTCACAAATCC+TGG | 0.419713 | 8.4:-22487852 | MS.gene057299:CDS |
| CTTTGCCATCTCAATTGAGA+TGG | 0.421086 | 8.4:+22487890 | None:intergenic |
| TCCAGAACTATTGTCTATCA+AGG | 0.428839 | 8.4:-22487676 | MS.gene057299:CDS |
| GGCTGGATAGGAGGCCTCTT+AGG | 0.432855 | 8.4:-22489117 | MS.gene057299:CDS |
| CAAGGGATCCAATTCGAATA+CGG | 0.434923 | 8.4:-22489078 | MS.gene057299:CDS |
| GAGGGGAGTGTCGGAGGAGG+AGG | 0.437559 | 8.4:+22489164 | None:intergenic |
| GTCTCACACCAGTCCACGTT+GGG | 0.462588 | 8.4:+22488961 | None:intergenic |
| ATCTACAACCTTCTCATATC+GGG | 0.463578 | 8.4:+22487950 | None:intergenic |
| TCATATACGGCCGCACCGGC+TGG | 0.469750 | 8.4:-22489134 | MS.gene057299:CDS |
| TCATTGTGGCTAACAACTCC+AGG | 0.479957 | 8.4:+22487834 | None:intergenic |
| TTACTCCAAAACCAAGGCTA+TGG | 0.480519 | 8.4:-22488752 | MS.gene057299:intron |
| TTCTTCCTTAAACCCAATCC+CGG | 0.488118 | 8.4:+22488801 | None:intergenic |
| GGCCGCACCGGCTGGATAGG+AGG | 0.489760 | 8.4:-22489126 | MS.gene057299:CDS |
| AAGCTCATTGTTACTTCTTG+GGG | 0.490161 | 8.4:+22487725 | None:intergenic |
| CGGTACAGAGTTTGCCTAAG+AGG | 0.492780 | 8.4:+22489103 | None:intergenic |
| CGGGTCGACCCAACGTGGAC+TGG | 0.494677 | 8.4:-22488969 | MS.gene057299:CDS |
| TAACAATAAGTCCACGTTCA+CGG | 0.500654 | 8.4:+22488878 | None:intergenic |
| CTATCCGTGCTAATGTGGTT+GGG | 0.501072 | 8.4:-22488924 | MS.gene057299:CDS |
| ATCCAATTCGAATACGGGTC+GGG | 0.505835 | 8.4:-22489072 | MS.gene057299:CDS |
| GGCAAACTCTGTACCGCCCA+AGG | 0.511999 | 8.4:-22489096 | MS.gene057299:CDS |
| GCCGTATATGAGAAACTTGA+GGG | 0.516441 | 8.4:+22489146 | None:intergenic |
| CTTGAGGGGAGTGTCGGAGG+AGG | 0.523463 | 8.4:+22489161 | None:intergenic |
| CACTCTTGAGGAACAAGCTA+AGG | 0.523587 | 8.4:-22487757 | MS.gene057299:CDS |
| CGGAGGAGGAGGATGGTGCT+GGG | 0.526896 | 8.4:+22489175 | None:intergenic |
| AATGTAACATACCATAGCCT+TGG | 0.526904 | 8.4:+22488741 | None:intergenic |
| AGTAACAATGAGCTTGATGC+GGG | 0.528741 | 8.4:-22487717 | MS.gene057299:CDS |
| GTATTCGAATTGGATCCCTT+GGG | 0.529711 | 8.4:+22489080 | None:intergenic |
| TTTGCCATCTCAATTGAGAT+GGG | 0.537632 | 8.4:+22487891 | None:intergenic |
| AAGGGATCCAATTCGAATAC+GGG | 0.542692 | 8.4:-22489077 | MS.gene057299:CDS |
| TGTGATGAAATTGCGAGGGT+TGG | 0.546615 | 8.4:+22487980 | None:intergenic |
| TTTCTCATATACGGCCGCAC+CGG | 0.558062 | 8.4:-22489138 | MS.gene057299:CDS |
| TCTTCCCATCTCAATTGAGA+TGG | 0.561970 | 8.4:-22487895 | MS.gene057299:CDS |
| ATATCGATTCAAGCTTCACC+TGG | 0.568911 | 8.4:-22487788 | MS.gene057299:CDS |
| TAAGAGGCCTCCTATCCAGC+CGG | 0.572784 | 8.4:+22489119 | None:intergenic |
| GGAGTGTCGGAGGAGGAGGA+TGG | 0.576494 | 8.4:+22489168 | None:intergenic |
| AAACTTGAGGGGAGTGTCGG+AGG | 0.580469 | 8.4:+22489158 | None:intergenic |
| ACTATCCGTGCTAATGTGGT+TGG | 0.582347 | 8.4:-22488925 | MS.gene057299:CDS |
| GCAGCATTAAACACGTGTGT+TGG | 0.584742 | 8.4:+22489000 | None:intergenic |
| TACGGCCGCACCGGCTGGAT+AGG | 0.586868 | 8.4:-22489129 | MS.gene057299:CDS |
| GAGAAACTTGAGGGGAGTGT+CGG | 0.586872 | 8.4:+22489155 | None:intergenic |
| CTGGAAGAACTTCACTCTTG+AGG | 0.589081 | 8.4:-22487769 | MS.gene057299:CDS |
| GGCCGTATATGAGAAACTTG+AGG | 0.591913 | 8.4:+22489145 | None:intergenic |
| AATAGGCATCCTCACTCTCA+AGG | 0.595727 | 8.4:+22488016 | None:intergenic |
| TGATGCGGGAAAATTGAAGA+AGG | 0.598610 | 8.4:-22487703 | MS.gene057299:CDS |
| TGTCTTCAAGCCAAATCAGA+AGG | 0.603264 | 8.4:-22487637 | None:intergenic |
| ATGGCAAAGAGAAACCTCAC+TGG | 0.606695 | 8.4:-22487876 | MS.gene057299:CDS |
| GCTGACGTGTGCCGTGAACG+TGG | 0.619625 | 8.4:-22488889 | MS.gene057299:CDS |
| AAAGATCACCCGATATGAGA+AGG | 0.619965 | 8.4:-22487958 | MS.gene057299:CDS |
| TTCGAATTGGATCCCTTGGG+CGG | 0.621824 | 8.4:+22489083 | None:intergenic |
| GCAAACTCTGTACCGCCCAA+GGG | 0.622614 | 8.4:-22489095 | MS.gene057299:CDS |
| ACACACGTGTTTAATGCTGC+TGG | 0.626893 | 8.4:-22488997 | MS.gene057299:CDS |
| ATCTTTGTGATGAAATTGCG+AGG | 0.632297 | 8.4:+22487975 | None:intergenic |
| GGCCTCCTATCCAGCCGGTG+CGG | 0.634921 | 8.4:+22489124 | None:intergenic |
| GATCCAATTCGAATACGGGT+CGG | 0.635111 | 8.4:-22489073 | MS.gene057299:CDS |
| AAGTAACAATGAGCTTGATG+CGG | 0.635352 | 8.4:-22487718 | MS.gene057299:CDS |
| ATGTATGCACCTTGAGAGTG+AGG | 0.639312 | 8.4:-22488025 | MS.gene057299:CDS |
| TGAAACTATCCGTGCTAATG+TGG | 0.665772 | 8.4:-22488929 | MS.gene057299:CDS |
| GAGTCCCAACCACATTAGCA+CGG | 0.686328 | 8.4:+22488920 | None:intergenic |
| ACATTTGTAAGATTTCATTG+TGG | 0.688248 | 8.4:+22487820 | None:intergenic |
| AGTCTCACACCAGTCCACGT+TGG | 0.693140 | 8.4:+22488960 | None:intergenic |
| TGTTACGGGTCGACCCAACG+TGG | 0.704086 | 8.4:-22488974 | MS.gene057299:CDS |
| CACAGGTAGAGGATCTGCTG+AGG | 0.706508 | 8.4:-22488058 | MS.gene057299:intron |
| TGAAGTTCCAGATTCCAGTG+AGG | 0.720062 | 8.4:+22487862 | None:intergenic |
| TCTTTGTGATGAAATTGCGA+GGG | 0.720478 | 8.4:+22487976 | None:intergenic |
| CCGTATATGAGAAACTTGAG+GGG | 0.728448 | 8.4:+22489147 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATATAAAACAGATCTA+AGG | + | chr8.4:22488275-22488294 | None:intergenic | 15.0% |
| !! | ATATCAAACAAATCAAAACA+CGG | + | chr8.4:22488380-22488399 | None:intergenic | 20.0% |
| !! | TAAAAAGAACCAATGAAATT+AGG | + | chr8.4:22488052-22488071 | None:intergenic | 20.0% |
| !!! | ATTGTTATTAATTTTGCTAC+TGG | - | chr8.4:22487959-22487978 | MS.gene057299:CDS | 20.0% |
| !!! | TGTTTAAGATTGATGTTTTT+TGG | - | chr8.4:22488128-22488147 | MS.gene057299:intron | 20.0% |
| ! | ACATTAACAAAAAGAAAGCA+AGG | - | chr8.4:22488684-22488703 | MS.gene057299:intron | 25.0% |
| ! | ACATTTGTAAGATTTCATTG+TGG | + | chr8.4:22489004-22489023 | None:intergenic | 25.0% |
| ! | GTTAACAAAAAAGGAAAACA+AGG | + | chr8.4:22488744-22488763 | None:intergenic | 25.0% |
| ! | TAATCATTCGTTTGTAACAT+TGG | + | chr8.4:22488559-22488578 | None:intergenic | 25.0% |
| ! | TTGGATAAATCAGATGAAAT+AGG | + | chr8.4:22488825-22488844 | None:intergenic | 25.0% |
| !! | AAAAACATTAGTCTCTTAAG+CGG | - | chr8.4:22488613-22488632 | MS.gene057299:intron | 25.0% |
| !! | CTTAAGAGACTAATGTTTTT+CGG | + | chr8.4:22488613-22488632 | None:intergenic | 25.0% |
| !! | TATGGTATGTTACATTGATT+TGG | - | chr8.4:22488087-22488106 | MS.gene057299:intron | 25.0% |
| !!! | ATGCTGATTTGTTGAATTAT+TGG | - | chr8.4:22488203-22488222 | MS.gene057299:intron | 25.0% |
| !!! | ATTGCATTAGTCTTTGTAAT+TGG | - | chr8.4:22488650-22488669 | MS.gene057299:intron | 25.0% |
| !!! | GATTTGTTGAATTATTGGTT+AGG | - | chr8.4:22488208-22488227 | MS.gene057299:intron | 25.0% |
| !!! | TTACTTTTATATGCAGTAGT+TGG | - | chr8.4:22488407-22488426 | MS.gene057299:intron | 25.0% |
| !!! | TTTTCCTTTTTTGTTAACAC+AGG | - | chr8.4:22488746-22488765 | MS.gene057299:intron | 25.0% |
| GAAGATACTCCTAATTTCAT+TGG | - | chr8.4:22488040-22488059 | MS.gene057299:CDS | 30.0% | |
| GTTACAAACGAATGATTACA+GGG | - | chr8.4:22488561-22488580 | MS.gene057299:intron | 30.0% | |
| TATCTACAACCTTCTCATAT+CGG | + | chr8.4:22488875-22488894 | None:intergenic | 30.0% | |
| TATGATGATCTTCATCTTCT+TGG | - | chr8.4:22487995-22488014 | MS.gene057299:CDS | 30.0% | |
| TCTACCTGTGTTAACAAAAA+AGG | + | chr8.4:22488753-22488772 | None:intergenic | 30.0% | |
| TGTTACAAACGAATGATTAC+AGG | - | chr8.4:22488560-22488579 | MS.gene057299:intron | 30.0% | |
| TTAACAAAAAGAAAGCAAGG+TGG | - | chr8.4:22488687-22488706 | MS.gene057299:intron | 30.0% | |
| ! | TTCTTTTTACTCCAAAACCA+AGG | - | chr8.4:22488063-22488082 | MS.gene057299:intron | 30.0% |
| !!! | TTTTTTGTTAACACAGGTAG+AGG | - | chr8.4:22488752-22488771 | MS.gene057299:intron | 30.0% |
| AAGTAACAATGAGCTTGATG+CGG | - | chr8.4:22489103-22489122 | MS.gene057299:CDS | 35.0% | |
| AATGTAACATACCATAGCCT+TGG | + | chr8.4:22488083-22488102 | None:intergenic | 35.0% | |
| ATCTACAACCTTCTCATATC+GGG | + | chr8.4:22488874-22488893 | None:intergenic | 35.0% | |
| ATCTTTGTGATGAAATTGCG+AGG | + | chr8.4:22488849-22488868 | None:intergenic | 35.0% | |
| GGGAAGAAGTTCATCTAAAA+TGG | + | chr8.4:22488913-22488932 | None:intergenic | 35.0% | |
| TAACAATAAGTCCACGTTCA+CGG | + | chr8.4:22487946-22487965 | None:intergenic | 35.0% | |
| TCCAGAACTATTGTCTATCA+AGG | - | chr8.4:22489145-22489164 | MS.gene057299:CDS | 35.0% | |
| TCCTTGATAGACAATAGTTC+TGG | + | chr8.4:22489149-22489168 | None:intergenic | 35.0% | |
| TCTTGAGAATCGATCTTCAT+TGG | - | chr8.4:22487775-22487794 | MS.gene057299:CDS | 35.0% | |
| TCTTTGTGATGAAATTGCGA+GGG | + | chr8.4:22488848-22488867 | None:intergenic | 35.0% | |
| TTTGCCATCTCAATTGAGAT+GGG | + | chr8.4:22488933-22488952 | None:intergenic | 35.0% | |
| ! | AAGCTCATTGTTACTTCTTG+GGG | + | chr8.4:22489099-22489118 | None:intergenic | 35.0% |
| ! | AGAAAGCAAGGTGGTATTTT+AGG | - | chr8.4:22488696-22488715 | MS.gene057299:intron | 35.0% |
| ! | CAAGCTCATTGTTACTTCTT+GGG | + | chr8.4:22489100-22489119 | None:intergenic | 35.0% |
| ! | TCAAGCTCATTGTTACTTCT+TGG | + | chr8.4:22489101-22489120 | None:intergenic | 35.0% |
| ! | TCTAAAATGGTCATCGAGTT+TGG | + | chr8.4:22488900-22488919 | None:intergenic | 35.0% |
| AAAGATCACCCGATATGAGA+AGG | - | chr8.4:22488863-22488882 | MS.gene057299:CDS | 40.0% | |
| AAGGGATCCAATTCGAATAC+GGG | - | chr8.4:22487744-22487763 | MS.gene057299:CDS | 40.0% | |
| AGTAACAATGAGCTTGATGC+GGG | - | chr8.4:22489104-22489123 | MS.gene057299:CDS | 40.0% | |
| ATCTTCATCTTCTTGGATCC+GGG | - | chr8.4:22488002-22488021 | MS.gene057299:CDS | 40.0% | |
| CAAGGGATCCAATTCGAATA+CGG | - | chr8.4:22487743-22487762 | MS.gene057299:CDS | 40.0% | |
| CCCCTCAAGTTTCTCATATA+CGG | - | chr8.4:22487674-22487693 | MS.gene057299:CDS | 40.0% | |
| CCGTATATGAGAAACTTGAG+GGG | + | chr8.4:22487677-22487696 | None:intergenic | 40.0% | |
| CTTTGCCATCTCAATTGAGA+TGG | + | chr8.4:22488934-22488953 | None:intergenic | 40.0% | |
| GATCTTCATCTTCTTGGATC+CGG | - | chr8.4:22488001-22488020 | MS.gene057299:CDS | 40.0% | |
| GCCGTATATGAGAAACTTGA+GGG | + | chr8.4:22487678-22487697 | None:intergenic | 40.0% | |
| GTATTCGAATTGGATCCCTT+GGG | + | chr8.4:22487744-22487763 | None:intergenic | 40.0% | |
| TCTTCCCATCTCAATTGAGA+TGG | - | chr8.4:22488926-22488945 | MS.gene057299:CDS | 40.0% | |
| TGAAACTATCCGTGCTAATG+TGG | - | chr8.4:22487892-22487911 | MS.gene057299:CDS | 40.0% | |
| TGATGCGGGAAAATTGAAGA+AGG | - | chr8.4:22489118-22489137 | MS.gene057299:CDS | 40.0% | |
| TTACTCCAAAACCAAGGCTA+TGG | - | chr8.4:22488069-22488088 | MS.gene057299:intron | 40.0% | |
| TTCTTCCTTAAACCCAATCC+CGG | + | chr8.4:22488023-22488042 | None:intergenic | 40.0% | |
| ! | ATCTGGAACTTCACAAATCC+TGG | - | chr8.4:22488969-22488988 | MS.gene057299:CDS | 40.0% |
| ! | GTTTAATGCTGCTGGTGTTA+CGG | - | chr8.4:22487832-22487851 | MS.gene057299:CDS | 40.0% |
| !! | ACATACCATAGCCTTGGTTT+TGG | + | chr8.4:22488077-22488096 | None:intergenic | 40.0% |
| !! | ATATCGATTCAAGCTTCACC+TGG | - | chr8.4:22489033-22489052 | MS.gene057299:CDS | 40.0% |
| !! | TTTAATGCTGCTGGTGTTAC+GGG | - | chr8.4:22487833-22487852 | MS.gene057299:CDS | 40.0% |
| AATAGGCATCCTCACTCTCA+AGG | + | chr8.4:22488808-22488827 | None:intergenic | 45.0% | |
| ACACACGTGTTTAATGCTGC+TGG | - | chr8.4:22487824-22487843 | MS.gene057299:CDS | 45.0% | |
| ACTATCCGTGCTAATGTGGT+TGG | - | chr8.4:22487896-22487915 | MS.gene057299:CDS | 45.0% | |
| AGAGAAACCTCACTGGAATC+TGG | - | chr8.4:22488952-22488971 | MS.gene057299:CDS | 45.0% | |
| ATCCAATTCGAATACGGGTC+GGG | - | chr8.4:22487749-22487768 | MS.gene057299:CDS | 45.0% | |
| ATCTTCTTGGATCCGGGATT+GGG | - | chr8.4:22488008-22488027 | MS.gene057299:CDS | 45.0% | |
| ATGGCAAAGAGAAACCTCAC+TGG | - | chr8.4:22488945-22488964 | MS.gene057299:CDS | 45.0% | |
| ATGTATGCACCTTGAGAGTG+AGG | - | chr8.4:22488796-22488815 | MS.gene057299:CDS | 45.0% | |
| CACTCTTGAGGAACAAGCTA+AGG | - | chr8.4:22489064-22489083 | MS.gene057299:CDS | 45.0% | |
| CGTATTCGAATTGGATCCCT+TGG | + | chr8.4:22487745-22487764 | None:intergenic | 45.0% | |
| CTATCCGTGCTAATGTGGTT+GGG | - | chr8.4:22487897-22487916 | MS.gene057299:CDS | 45.0% | |
| CTCAAGAGTGAAGTTCTTCC+AGG | + | chr8.4:22489054-22489073 | None:intergenic | 45.0% | |
| CTGGAAGAACTTCACTCTTG+AGG | - | chr8.4:22489052-22489071 | MS.gene057299:CDS | 45.0% | |
| GATCCAATTCGAATACGGGT+CGG | - | chr8.4:22487748-22487767 | MS.gene057299:CDS | 45.0% | |
| GCAGCATTAAACACGTGTGT+TGG | + | chr8.4:22487824-22487843 | None:intergenic | 45.0% | |
| GGCCGTATATGAGAAACTTG+AGG | + | chr8.4:22487679-22487698 | None:intergenic | 45.0% | |
| TCATTGTGGCTAACAACTCC+AGG | + | chr8.4:22488990-22489009 | None:intergenic | 45.0% | |
| TGAAGTTCCAGATTCCAGTG+AGG | + | chr8.4:22488962-22488981 | None:intergenic | 45.0% | |
| TGATCTTGATCCGACAACCA+AGG | + | chr8.4:22488438-22488457 | None:intergenic | 45.0% | |
| TGTGATGAAATTGCGAGGGT+TGG | + | chr8.4:22488844-22488863 | None:intergenic | 45.0% | |
| ! | GTTGGAGTATCCTTGGTTGT+CGG | - | chr8.4:22488425-22488444 | MS.gene057299:intron | 45.0% |
| ! | TGCAGTAGTTGGAGTATCCT+TGG | - | chr8.4:22488418-22488437 | MS.gene057299:intron | 45.0% |
| CATCTTCTTGGATCCGGGAT+TGG | - | chr8.4:22488007-22488026 | MS.gene057299:CDS | 50.0% | |
| CGGTACAGAGTTTGCCTAAG+AGG | + | chr8.4:22487721-22487740 | None:intergenic | 50.0% | |
| GAGTCCCAACCACATTAGCA+CGG | + | chr8.4:22487904-22487923 | None:intergenic | 50.0% | |
| TGGATCCGGGATTGGGTTTA+AGG | - | chr8.4:22488015-22488034 | MS.gene057299:CDS | 50.0% | |
| TTCGAATTGGATCCCTTGGG+CGG | + | chr8.4:22487741-22487760 | None:intergenic | 50.0% | |
| TTTCTCATATACGGCCGCAC+CGG | - | chr8.4:22487683-22487702 | MS.gene057299:CDS | 50.0% | |
| ! | GAGAAACTTGAGGGGAGTGT+CGG | + | chr8.4:22487669-22487688 | None:intergenic | 50.0% |
| AGTCTCACACCAGTCCACGT+TGG | + | chr8.4:22487864-22487883 | None:intergenic | 55.0% | |
| CACAGGTAGAGGATCTGCTG+AGG | - | chr8.4:22488763-22488782 | MS.gene057299:CDS | 55.0% | |
| GACCCGACCCGTATTCGAAT+TGG | + | chr8.4:22487754-22487773 | None:intergenic | 55.0% | |
| GCAAACTCTGTACCGCCCAA+GGG | - | chr8.4:22487726-22487745 | MS.gene057299:CDS | 55.0% | |
| GTCTCACACCAGTCCACGTT+GGG | + | chr8.4:22487863-22487882 | None:intergenic | 55.0% | |
| TAAGAGGCCTCCTATCCAGC+CGG | + | chr8.4:22487705-22487724 | None:intergenic | 55.0% | |
| !! | AAACTTGAGGGGAGTGTCGG+AGG | + | chr8.4:22487666-22487685 | None:intergenic | 55.0% |
| GGCAAACTCTGTACCGCCCA+AGG | - | chr8.4:22487725-22487744 | MS.gene057299:CDS | 60.0% | |
| GGCTGGATAGGAGGCCTCTT+AGG | - | chr8.4:22487704-22487723 | MS.gene057299:CDS | 60.0% | |
| TGTTACGGGTCGACCCAACG+TGG | - | chr8.4:22487847-22487866 | MS.gene057299:CDS | 60.0% | |
| CGGAGGAGGAGGATGGTGCT+GGG | + | chr8.4:22487649-22487668 | None:intergenic | 65.0% | |
| GCTGACGTGTGCCGTGAACG+TGG | - | chr8.4:22487932-22487951 | MS.gene057299:CDS | 65.0% | |
| TCGGAGGAGGAGGATGGTGC+TGG | + | chr8.4:22487650-22487669 | None:intergenic | 65.0% | |
| ! | TCATATACGGCCGCACCGGC+TGG | - | chr8.4:22487687-22487706 | MS.gene057299:CDS | 65.0% |
| !! | CTTGAGGGGAGTGTCGGAGG+AGG | + | chr8.4:22487663-22487682 | None:intergenic | 65.0% |
| !! | GGAGTGTCGGAGGAGGAGGA+TGG | + | chr8.4:22487656-22487675 | None:intergenic | 65.0% |
| CGGGTCGACCCAACGTGGAC+TGG | - | chr8.4:22487852-22487871 | MS.gene057299:CDS | 70.0% | |
| GGCCTCCTATCCAGCCGGTG+CGG | + | chr8.4:22487700-22487719 | None:intergenic | 70.0% | |
| !! | GAGGGGAGTGTCGGAGGAGG+AGG | + | chr8.4:22487660-22487679 | None:intergenic | 70.0% |
| !! | TACGGCCGCACCGGCTGGAT+AGG | - | chr8.4:22487692-22487711 | MS.gene057299:CDS | 70.0% |
| !! | GGCCGCACCGGCTGGATAGG+AGG | - | chr8.4:22487695-22487714 | MS.gene057299:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 22487638 | 22489205 | 22487638 | ID=MS.gene057299 |
| chr8.4 | mRNA | 22487638 | 22489205 | 22487638 | ID=MS.gene057299.t1;Parent=MS.gene057299 |
| chr8.4 | exon | 22488753 | 22489205 | 22488753 | ID=MS.gene057299.t1.exon1;Parent=MS.gene057299.t1 |
| chr8.4 | CDS | 22488753 | 22489205 | 22488753 | ID=cds.MS.gene057299.t1;Parent=MS.gene057299.t1 |
| chr8.4 | exon | 22487638 | 22488075 | 22487638 | ID=MS.gene057299.t1.exon2;Parent=MS.gene057299.t1 |
| chr8.4 | CDS | 22487638 | 22488075 | 22487638 | ID=cds.MS.gene057299.t1;Parent=MS.gene057299.t1 |
| Gene Sequence |
| Protein sequence |
