Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37318.t1 | XP_003626241.1 | 97.4 | 234 | 6 | 0 | 1 | 234 | 1 | 234 | 4.20E-131 | 477.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37318.t1 | I6YGS0 | 43.1 | 239 | 123 | 8 | 7 | 234 | 7 | 243 | 2.0e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37318.t1 | G7KXM0 | 97.4 | 234 | 6 | 0 | 1 | 234 | 1 | 234 | 3.0e-131 | 477.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050922 | MS.gene37318 | 0.88503 | 1.15E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37318.t1 | MTR_7g112970 | 97.436 | 234 | 6 | 0 | 1 | 234 | 1 | 234 | 5.63e-172 | 476 |
| MS.gene37318.t1 | MTR_7g113010 | 88.186 | 237 | 25 | 1 | 1 | 234 | 1 | 237 | 2.64e-154 | 441 |
| MS.gene37318.t1 | MTR_7g112963 | 85.232 | 237 | 32 | 1 | 1 | 234 | 1 | 237 | 1.95e-150 | 421 |
| MS.gene37318.t1 | MTR_7g112960 | 83.966 | 237 | 35 | 1 | 1 | 234 | 1 | 237 | 2.08e-150 | 421 |
| MS.gene37318.t1 | MTR_7g113020 | 77.215 | 237 | 51 | 2 | 1 | 234 | 1 | 237 | 1.38e-136 | 386 |
| MS.gene37318.t1 | MTR_7g113050 | 76.793 | 237 | 52 | 2 | 1 | 234 | 1 | 237 | 2.96e-135 | 380 |
| MS.gene37318.t1 | MTR_7g113030 | 76.371 | 237 | 53 | 1 | 1 | 234 | 1 | 237 | 6.78e-135 | 382 |
| MS.gene37318.t1 | MTR_7g113050 | 76.793 | 237 | 52 | 2 | 1 | 234 | 1 | 237 | 1.54e-134 | 381 |
| MS.gene37318.t1 | MTR_7g112615 | 75.949 | 237 | 54 | 2 | 1 | 234 | 1 | 237 | 2.37e-133 | 375 |
| MS.gene37318.t1 | MTR_7g112615 | 75.949 | 237 | 54 | 2 | 1 | 234 | 1 | 237 | 2.44e-132 | 375 |
| MS.gene37318.t1 | MTR_7g112620 | 75.105 | 237 | 56 | 2 | 1 | 234 | 1 | 237 | 4.09e-132 | 375 |
| MS.gene37318.t1 | MTR_4g005160 | 66.667 | 240 | 73 | 4 | 1 | 234 | 1 | 239 | 1.97e-115 | 333 |
| MS.gene37318.t1 | MTR_4g120240 | 62.605 | 238 | 84 | 3 | 1 | 234 | 37 | 273 | 1.02e-108 | 317 |
| MS.gene37318.t1 | MTR_7g108825 | 63.559 | 236 | 83 | 3 | 1 | 234 | 1 | 235 | 1.58e-103 | 299 |
| MS.gene37318.t1 | MTR_7g108825 | 63.559 | 236 | 83 | 3 | 1 | 234 | 1 | 235 | 2.78e-102 | 299 |
| MS.gene37318.t1 | MTR_7g112615 | 84.906 | 159 | 24 | 0 | 1 | 159 | 1 | 159 | 1.30e-101 | 292 |
| MS.gene37318.t1 | MTR_1g083480 | 76.101 | 159 | 34 | 2 | 1 | 156 | 1 | 158 | 1.35e-88 | 259 |
| MS.gene37318.t1 | MTR_8g076680 | 46.639 | 238 | 120 | 3 | 1 | 234 | 3 | 237 | 1.78e-79 | 238 |
| MS.gene37318.t1 | MTR_8g076680 | 46.639 | 238 | 120 | 3 | 1 | 234 | 3 | 237 | 1.69e-78 | 239 |
| MS.gene37318.t1 | MTR_3g024250 | 79.439 | 107 | 22 | 0 | 46 | 152 | 1 | 107 | 4.27e-58 | 181 |
| MS.gene37318.t1 | MTR_2g090240 | 39.331 | 239 | 135 | 5 | 1 | 234 | 1 | 234 | 4.30e-55 | 179 |
| MS.gene37318.t1 | MTR_4g089060 | 38.362 | 232 | 133 | 4 | 1 | 228 | 1 | 226 | 6.71e-55 | 176 |
| MS.gene37318.t1 | MTR_4g089060 | 38.235 | 238 | 136 | 5 | 1 | 233 | 1 | 232 | 2.54e-54 | 177 |
| MS.gene37318.t1 | MTR_2g090245 | 39.749 | 239 | 134 | 6 | 1 | 234 | 1 | 234 | 1.50e-53 | 175 |
| MS.gene37318.t1 | MTR_4g089040 | 38.235 | 238 | 136 | 5 | 1 | 233 | 1 | 232 | 6.51e-53 | 173 |
| MS.gene37318.t1 | MTR_4g089060 | 34.717 | 265 | 135 | 6 | 1 | 233 | 1 | 259 | 3.59e-49 | 164 |
| MS.gene37318.t1 | MTR_7g112910 | 47.742 | 155 | 55 | 5 | 72 | 222 | 1 | 133 | 2.08e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37318.t1 | AT3G05600 | 64.050 | 242 | 79 | 4 | 1 | 234 | 1 | 242 | 5.45e-113 | 323 |
| MS.gene37318.t1 | AT3G05600 | 64.050 | 242 | 79 | 4 | 1 | 234 | 1 | 242 | 3.32e-112 | 325 |
| MS.gene37318.t1 | AT4G02340 | 60.000 | 235 | 92 | 2 | 1 | 234 | 1 | 234 | 3.18e-104 | 305 |
| MS.gene37318.t1 | AT2G26740 | 61.304 | 230 | 81 | 4 | 4 | 225 | 1 | 230 | 1.65e-99 | 292 |
| MS.gene37318.t1 | AT2G26750 | 59.825 | 229 | 85 | 4 | 4 | 225 | 1 | 229 | 2.31e-96 | 284 |
| MS.gene37318.t1 | AT4G15960 | 54.132 | 242 | 103 | 3 | 1 | 234 | 51 | 292 | 5.47e-95 | 283 |
| MS.gene37318.t1 | AT4G15955 | 53.333 | 240 | 79 | 5 | 5 | 234 | 6 | 222 | 1.05e-82 | 249 |
| MS.gene37318.t1 | AT3G51000 | 50.847 | 236 | 108 | 4 | 4 | 234 | 5 | 237 | 8.60e-82 | 247 |
| MS.gene37318.t1 | AT4G15955 | 62.428 | 173 | 55 | 2 | 5 | 167 | 6 | 178 | 1.73e-76 | 229 |
| MS.gene37318.t1 | AT4G15955 | 60.116 | 173 | 59 | 2 | 5 | 167 | 6 | 178 | 8.36e-73 | 219 |
| MS.gene37318.t1 | AT4G12830 | 32.174 | 115 | 75 | 2 | 24 | 136 | 132 | 245 | 6.93e-11 | 61.6 |
Find 76 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTAACTCTTTC+AGG | 0.203556 | 7.2:+4214184 | None:intergenic |
| CTCTCAGCTCCCTTGGTTAT+CGG | 0.233890 | 7.2:-4214390 | MS.gene37318:CDS |
| CCATCAACAGGTTTCACTTT+GGG | 0.262116 | 7.2:+4214130 | None:intergenic |
| GATGGCATGCGAGCCTTATT+TGG | 0.268655 | 7.2:-4214112 | MS.gene37318:CDS |
| CTTCCTTGTGGCTCATGATT+GGG | 0.281967 | 7.2:-4214242 | MS.gene37318:CDS |
| TCTTCCTTGTGGCTCATGAT+TGG | 0.288857 | 7.2:-4214243 | MS.gene37318:CDS |
| ATAACAGGAACTAGGGAAAA+TGG | 0.297439 | 7.2:-4213480 | MS.gene37318:intron |
| GGTTTCACTTTGGGGTTTCT+TGG | 0.301325 | 7.2:+4214139 | None:intergenic |
| GTACAAAGCCCCTCCCTTCT+TGG | 0.301476 | 7.2:-4213349 | MS.gene37318:CDS |
| AACCTGTTCTGGGCTATCTT+TGG | 0.320528 | 7.2:+4213445 | None:intergenic |
| CGCCATGAATACCAGAGTTC+GGG | 0.321570 | 7.2:+4214427 | None:intergenic |
| ATAATAGTCATCTCCAAATA+AGG | 0.326858 | 7.2:+4214099 | None:intergenic |
| GCTCCAGATCTTCGTGGTTA+TGG | 0.348958 | 7.2:-4214361 | MS.gene37318:CDS |
| ATGCTCTTGATAACCTGTTC+TGG | 0.358215 | 7.2:+4213434 | None:intergenic |
| CTATTATATCTGCAGATTCC+AGG | 0.362815 | 7.2:-4214083 | MS.gene37318:intron |
| TGTATAACTGCTTACCGAAC+TGG | 0.368608 | 7.2:+4214324 | None:intergenic |
| TTTGAAAAGACTGGATTTAG+TGG | 0.371587 | 7.2:-4213290 | MS.gene37318:CDS |
| GCTTCTAAATTTGAAAAGAC+TGG | 0.372902 | 7.2:-4213299 | MS.gene37318:CDS |
| GTTATCAAGAGCATGCTTAC+AGG | 0.380993 | 7.2:-4213425 | MS.gene37318:CDS |
| TGAGATTTCTGTAGAAGTTA+AGG | 0.381104 | 7.2:+4213264 | None:intergenic |
| GAAGGGAGGGGCTTTGTACT+TGG | 0.389547 | 7.2:+4213353 | None:intergenic |
| TCCCCGAACTCTGGTATTCA+TGG | 0.400658 | 7.2:-4214429 | MS.gene37318:CDS |
| CGTTCTTTGGGTAAGATTAG+TGG | 0.401266 | 7.2:+4213389 | None:intergenic |
| CATAGGCTTTAACTCTTTCA+GGG | 0.412776 | 7.2:+4214185 | None:intergenic |
| CCCAAAGTGAAACCTGTTGA+TGG | 0.418758 | 7.2:-4214130 | MS.gene37318:CDS |
| TCTCAGCTCCCTTGGTTATC+GGG | 0.422067 | 7.2:-4214389 | MS.gene37318:CDS |
| CAATCTATATAACAGGAACT+AGG | 0.423694 | 7.2:-4213488 | MS.gene37318:intron |
| ATTGTTGCTCTCAGCTCCCT+TGG | 0.441960 | 7.2:-4214397 | MS.gene37318:CDS |
| GCGCCATGAATACCAGAGTT+CGG | 0.442920 | 7.2:+4214426 | None:intergenic |
| TCACCATAACCACGAAGATC+TGG | 0.446912 | 7.2:+4214358 | None:intergenic |
| CCGTGAAGGAACAAAACAAC+TGG | 0.460486 | 7.2:+4214454 | None:intergenic |
| TGCCAAAGATAGCCCAGAAC+AGG | 0.465178 | 7.2:-4213447 | MS.gene37318:CDS |
| GCCATCAACAGGTTTCACTT+TGG | 0.465827 | 7.2:+4214129 | None:intergenic |
| AAGGCTCGCATGCCATCAAC+AGG | 0.466113 | 7.2:+4214118 | None:intergenic |
| CCTCCCTTCTTGGCTCTCGC+AGG | 0.469469 | 7.2:-4213339 | MS.gene37318:CDS |
| CATCAACAGGTTTCACTTTG+GGG | 0.472252 | 7.2:+4214131 | None:intergenic |
| CACTTGGTTGGTGACATCGT+TGG | 0.474476 | 7.2:-4214295 | MS.gene37318:CDS |
| ATGCTTACAGGTCGGACTAC+TGG | 0.478167 | 7.2:-4213413 | MS.gene37318:CDS |
| GGGAGCTGAGAGCAACAATC+TGG | 0.483314 | 7.2:+4214401 | None:intergenic |
| TATACAATCTTCCACTTGGT+TGG | 0.484085 | 7.2:-4214307 | MS.gene37318:CDS |
| AAAATGCATATTGCTGAGAA+AGG | 0.485302 | 7.2:-4214487 | MS.gene37318:CDS |
| TTCCTTGTGGCTCATGATTG+GGG | 0.491817 | 7.2:-4214241 | MS.gene37318:CDS |
| TTCACGGCTTCCCCGAACTC+TGG | 0.493835 | 7.2:-4214438 | MS.gene37318:CDS |
| TGCTCTTGATAACCTGTTCT+GGG | 0.497008 | 7.2:+4213435 | None:intergenic |
| CTGCGAGAGCCAAGAAGGGA+GGG | 0.508145 | 7.2:+4213340 | None:intergenic |
| GTATAACTGCTTACCGAACT+GGG | 0.514137 | 7.2:+4214325 | None:intergenic |
| GTTGGTCTCATCGACTCGCT+TGG | 0.518409 | 7.2:-4214277 | MS.gene37318:CDS |
| CATGATTGGGGTGCCATCGT+TGG | 0.524943 | 7.2:-4214229 | MS.gene37318:CDS |
| TGCGAGAGCCAAGAAGGGAG+GGG | 0.536685 | 7.2:+4213341 | None:intergenic |
| AATCTATATAACAGGAACTA+GGG | 0.539991 | 7.2:-4213487 | MS.gene37318:intron |
| CAGTTATACAATCTTCCACT+TGG | 0.551753 | 7.2:-4214311 | MS.gene37318:CDS |
| ATTGCTGAGAAAGGAAAAGA+AGG | 0.557400 | 7.2:-4214478 | MS.gene37318:CDS |
| TGACACTGATGTCCCCAGTT+CGG | 0.560761 | 7.2:-4214338 | MS.gene37318:CDS |
| TCTTCCTGCGAGAGCCAAGA+AGG | 0.562501 | 7.2:+4213335 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.567993 | 7.2:-4214514 | MS.gene37318:CDS |
| CGGAACACTCAGACACACAT+AGG | 0.568178 | 7.2:+4214168 | None:intergenic |
| CCTGCGAGAGCCAAGAAGGG+AGG | 0.575958 | 7.2:+4213339 | None:intergenic |
| ATTGGGGTGCCATCGTTGGT+TGG | 0.587085 | 7.2:-4214225 | MS.gene37318:CDS |
| GAAAAGACTGGATTTAGTGG+TGG | 0.588504 | 7.2:-4213287 | MS.gene37318:CDS |
| AGAGTTCGGGGAAGCCGTGA+AGG | 0.588682 | 7.2:+4214440 | None:intergenic |
| GCGGTCGCTCCAGATCTTCG+TGG | 0.594935 | 7.2:-4214367 | MS.gene37318:CDS |
| TTGGGGTTTCTTGGTAACAA+CGG | 0.609164 | 7.2:+4214148 | None:intergenic |
| GAGCGACCGCCCGATAACCA+AGG | 0.609516 | 7.2:+4214380 | None:intergenic |
| AGCGACCGCCCGATAACCAA+GGG | 0.616077 | 7.2:+4214381 | None:intergenic |
| CTTCCTGCGAGAGCCAAGAA+GGG | 0.622917 | 7.2:+4213336 | None:intergenic |
| CACCCCAATCATGAGCCACA+AGG | 0.623498 | 7.2:+4214239 | None:intergenic |
| AGCTGAGAGCAACAATCTGG+TGG | 0.629150 | 7.2:+4214404 | None:intergenic |
| CAACGATGTCACCAACCAAG+TGG | 0.634014 | 7.2:+4214296 | None:intergenic |
| AACACCAAAGAAGAGATGGA+AGG | 0.649645 | 7.2:-4214544 | None:intergenic |
| TCAAGAGCATGCTTACAGGT+CGG | 0.653704 | 7.2:-4213421 | MS.gene37318:CDS |
| TGTTGATCAAGTCTTCCTTG+TGG | 0.670046 | 7.2:-4214254 | MS.gene37318:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.2:-4214524 | MS.gene37318:CDS |
| TATAACTGCTTACCGAACTG+GGG | 0.680481 | 7.2:+4214326 | None:intergenic |
| GCAAAGATACCAACCAACGA+TGG | 0.687950 | 7.2:+4214216 | None:intergenic |
| CAGCTCCCTTGGTTATCGGG+CGG | 0.692571 | 7.2:-4214386 | MS.gene37318:CDS |
| GCCATGAATACCAGAGTTCG+GGG | 0.700987 | 7.2:+4214428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGATTATATTAATGGAA+TGG | + | chr7.2:4214224-4214243 | None:intergenic | 15.0% |
| !! | ATCATGTATTTCAAATAAAT+GGG | + | chr7.2:4213937-4213956 | None:intergenic | 15.0% |
| !! | ATCTTAACAGATTATTTAAA+TGG | - | chr7.2:4213805-4213824 | MS.gene37318:intron | 15.0% |
| !! | GCAATAATAGATTATATTAA+TGG | + | chr7.2:4214229-4214248 | None:intergenic | 15.0% |
| !! | TATCATGTATTTCAAATAAA+TGG | + | chr7.2:4213938-4213957 | None:intergenic | 15.0% |
| !! | TTTGATAAATAAATAAAGTG+TGG | - | chr7.2:4213848-4213867 | MS.gene37318:intron | 15.0% |
| !!! | TTTTAACTTGATTAAGTAAA+TGG | - | chr7.2:4213992-4214011 | MS.gene37318:intron | 15.0% |
| !! | AAAATATAAGAATTCAAACC+TGG | + | chr7.2:4213727-4213746 | None:intergenic | 20.0% |
| !! | TAACAGATTATTTAAATGGA+TGG | - | chr7.2:4213809-4213828 | MS.gene37318:intron | 20.0% |
| !! | TCATGTATTTCAAATAAATG+GGG | + | chr7.2:4213936-4213955 | None:intergenic | 20.0% |
| !! | TTATCTCATATGTTAATCAT+AGG | - | chr7.2:4214168-4214187 | MS.gene37318:CDS | 20.0% |
| !!! | ATGAGATAACCTTTTTTTTT+AGG | + | chr7.2:4214157-4214176 | None:intergenic | 20.0% |
| !!! | TGAGATAACCTTTTTTTTTA+GGG | + | chr7.2:4214156-4214175 | None:intergenic | 20.0% |
| ! | AATCTATATAACAGGAACTA+GGG | - | chr7.2:4214302-4214321 | MS.gene37318:CDS | 25.0% |
| ! | ATAATAGTCATCTCCAAATA+AGG | + | chr7.2:4213693-4213712 | None:intergenic | 25.0% |
| ! | ATATGTTCCCCTAAAAAAAA+AGG | - | chr7.2:4214145-4214164 | MS.gene37318:CDS | 25.0% |
| !!! | GAGATAACCTTTTTTTTTAG+GGG | + | chr7.2:4214155-4214174 | None:intergenic | 25.0% |
| AAAATGCATATTGCTGAGAA+AGG | - | chr7.2:4213302-4213321 | MS.gene37318:CDS | 30.0% | |
| CAATCTATATAACAGGAACT+AGG | - | chr7.2:4214301-4214320 | MS.gene37318:CDS | 30.0% | |
| CTAGTTCCTGTTATATAGAT+TGG | + | chr7.2:4214303-4214322 | None:intergenic | 30.0% | |
| GCTTCTAAATTTGAAAAGAC+TGG | - | chr7.2:4214490-4214509 | MS.gene37318:CDS | 30.0% | |
| GGTACTAGAAAATACTACTT+TGG | + | chr7.2:4213888-4213907 | None:intergenic | 30.0% | |
| TGAGATTTCTGTAGAAGTTA+AGG | + | chr7.2:4214528-4214547 | None:intergenic | 30.0% | |
| TTTGAAAAGACTGGATTTAG+TGG | - | chr7.2:4214499-4214518 | MS.gene37318:CDS | 30.0% | |
| ! | ATCAGTTGTTGTTGATCTAA+TGG | - | chr7.2:4214192-4214211 | MS.gene37318:CDS | 30.0% |
| !! | ATGAGATAAAAAGCGTTCTT+TGG | + | chr7.2:4214416-4214435 | None:intergenic | 30.0% |
| !! | TGAGATAAAAAGCGTTCTTT+GGG | + | chr7.2:4214415-4214434 | None:intergenic | 30.0% |
| ATAACAGGAACTAGGGAAAA+TGG | - | chr7.2:4214309-4214328 | MS.gene37318:CDS | 35.0% | |
| ATTGCTGAGAAAGGAAAAGA+AGG | - | chr7.2:4213311-4213330 | MS.gene37318:CDS | 35.0% | |
| CAGTTATACAATCTTCCACT+TGG | - | chr7.2:4213478-4213497 | MS.gene37318:intron | 35.0% | |
| CCAACTCCAATCTATATAAC+AGG | - | chr7.2:4214294-4214313 | MS.gene37318:CDS | 35.0% | |
| CCTGTTATATAGATTGGAGT+TGG | + | chr7.2:4214297-4214316 | None:intergenic | 35.0% | |
| CTATTATATCTGCAGATTCC+AGG | - | chr7.2:4213706-4213725 | MS.gene37318:intron | 35.0% | |
| TATACAATCTTCCACTTGGT+TGG | - | chr7.2:4213482-4213501 | MS.gene37318:intron | 35.0% | |
| TTACTCTTGCTCACTTCAAA+TGG | - | chr7.2:4213773-4213792 | MS.gene37318:intron | 35.0% | |
| TTGAAGTGAGCAAGAGTAAA+GGG | + | chr7.2:4213772-4213791 | None:intergenic | 35.0% | |
| ! | ACATAGGCTTTAACTCTTTC+AGG | + | chr7.2:4213608-4213627 | None:intergenic | 35.0% |
| ! | CATAGGCTTTAACTCTTTCA+GGG | + | chr7.2:4213607-4213626 | None:intergenic | 35.0% |
| ! | GTCATTTGAAACAAGAGTCT+GGG | - | chr7.2:4214104-4214123 | MS.gene37318:CDS | 35.0% |
| ! | TACCAAACTCGTTTTCCTTA+CGG | - | chr7.2:4213904-4213923 | MS.gene37318:intron | 35.0% |
| ! | TGTCATTTGAAACAAGAGTC+TGG | - | chr7.2:4214103-4214122 | MS.gene37318:CDS | 35.0% |
| ! | TTTGAAGTGAGCAAGAGTAA+AGG | + | chr7.2:4213773-4213792 | None:intergenic | 35.0% |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.2:4213265-4213284 | MS.gene37318:CDS | 40.0% | |
| CATCAACAGGTTTCACTTTG+GGG | + | chr7.2:4213661-4213680 | None:intergenic | 40.0% | |
| CCATCAACAGGTTTCACTTT+GGG | + | chr7.2:4213662-4213681 | None:intergenic | 40.0% | |
| CGTTCTTTGGGTAAGATTAG+TGG | + | chr7.2:4214403-4214422 | None:intergenic | 40.0% | |
| GAAAAGACTGGATTTAGTGG+TGG | - | chr7.2:4214502-4214521 | MS.gene37318:CDS | 40.0% | |
| GTATAACTGCTTACCGAACT+GGG | + | chr7.2:4213467-4213486 | None:intergenic | 40.0% | |
| TATAACTGCTTACCGAACTG+GGG | + | chr7.2:4213466-4213485 | None:intergenic | 40.0% | |
| TGTATAACTGCTTACCGAAC+TGG | + | chr7.2:4213468-4213487 | None:intergenic | 40.0% | |
| TGTTGATCAAGTCTTCCTTG+TGG | - | chr7.2:4213535-4213554 | MS.gene37318:intron | 40.0% | |
| ! | ATGCTCTTGATAACCTGTTC+TGG | + | chr7.2:4214358-4214377 | None:intergenic | 40.0% |
| ! | GTTATCAAGAGCATGCTTAC+AGG | - | chr7.2:4214364-4214383 | MS.gene37318:CDS | 40.0% |
| ! | TGCTCTTGATAACCTGTTCT+GGG | + | chr7.2:4214357-4214376 | None:intergenic | 40.0% |
| ! | TTGGGGTTTCTTGGTAACAA+CGG | + | chr7.2:4213644-4213663 | None:intergenic | 40.0% |
| ! | TTTGAAACAAGAGTCTGGGA+AGG | - | chr7.2:4214108-4214127 | MS.gene37318:CDS | 40.0% |
| !! | CCAGTTGTTTTGTTCCTTCA+CGG | - | chr7.2:4213335-4213354 | MS.gene37318:CDS | 40.0% |
| AGCCGTAAGGAAAACGAGTT+TGG | + | chr7.2:4213909-4213928 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.2:4213275-4213294 | MS.gene37318:CDS | 45.0% | |
| CCCAAAGTGAAACCTGTTGA+TGG | - | chr7.2:4213659-4213678 | MS.gene37318:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+TGG | + | chr7.2:4213338-4213357 | None:intergenic | 45.0% | |
| CTTCCTTGTGGCTCATGATT+GGG | - | chr7.2:4213547-4213566 | MS.gene37318:intron | 45.0% | |
| GCAAAGATACCAACCAACGA+TGG | + | chr7.2:4213576-4213595 | None:intergenic | 45.0% | |
| GCCATCAACAGGTTTCACTT+TGG | + | chr7.2:4213663-4213682 | None:intergenic | 45.0% | |
| TAAATGGGGAAAGAGCCGTA+AGG | + | chr7.2:4213922-4213941 | None:intergenic | 45.0% | |
| TCACCATAACCACGAAGATC+TGG | + | chr7.2:4213434-4213453 | None:intergenic | 45.0% | |
| TCTTCCTTGTGGCTCATGAT+TGG | - | chr7.2:4213546-4213565 | MS.gene37318:intron | 45.0% | |
| TTCCTTGTGGCTCATGATTG+GGG | - | chr7.2:4213548-4213567 | MS.gene37318:intron | 45.0% | |
| ! | AACCTGTTCTGGGCTATCTT+TGG | + | chr7.2:4214347-4214366 | None:intergenic | 45.0% |
| ! | TCAAGAGCATGCTTACAGGT+CGG | - | chr7.2:4214368-4214387 | MS.gene37318:CDS | 45.0% |
| !! | GGTTTCACTTTGGGGTTTCT+TGG | + | chr7.2:4213653-4213672 | None:intergenic | 45.0% |
| AGCTGAGAGCAACAATCTGG+TGG | + | chr7.2:4213388-4213407 | None:intergenic | 50.0% | |
| ATGCTTACAGGTCGGACTAC+TGG | - | chr7.2:4214376-4214395 | MS.gene37318:CDS | 50.0% | |
| ATTGTTGCTCTCAGCTCCCT+TGG | - | chr7.2:4213392-4213411 | MS.gene37318:CDS | 50.0% | |
| CAACGATGTCACCAACCAAG+TGG | + | chr7.2:4213496-4213515 | None:intergenic | 50.0% | |
| CGCCATGAATACCAGAGTTC+GGG | + | chr7.2:4213365-4213384 | None:intergenic | 50.0% | |
| CGGAACACTCAGACACACAT+AGG | + | chr7.2:4213624-4213643 | None:intergenic | 50.0% | |
| CTCTCAGCTCCCTTGGTTAT+CGG | - | chr7.2:4213399-4213418 | MS.gene37318:CDS | 50.0% | |
| GCCATGAATACCAGAGTTCG+GGG | + | chr7.2:4213364-4213383 | None:intergenic | 50.0% | |
| GCGCCATGAATACCAGAGTT+CGG | + | chr7.2:4213366-4213385 | None:intergenic | 50.0% | |
| GCTCCAGATCTTCGTGGTTA+TGG | - | chr7.2:4213428-4213447 | MS.gene37318:CDS | 50.0% | |
| TCCCCGAACTCTGGTATTCA+TGG | - | chr7.2:4213360-4213379 | MS.gene37318:CDS | 50.0% | |
| TCTCAGCTCCCTTGGTTATC+GGG | - | chr7.2:4213400-4213419 | MS.gene37318:CDS | 50.0% | |
| TGACACTGATGTCCCCAGTT+CGG | - | chr7.2:4213451-4213470 | MS.gene37318:CDS | 50.0% | |
| TGCCAAAGATAGCCCAGAAC+AGG | - | chr7.2:4214342-4214361 | MS.gene37318:CDS | 50.0% | |
| !! | CACTTGGTTGGTGACATCGT+TGG | - | chr7.2:4213494-4213513 | MS.gene37318:intron | 50.0% |
| !! | GATGGCATGCGAGCCTTATT+TGG | - | chr7.2:4213677-4213696 | MS.gene37318:intron | 50.0% |
| AAGGCTCGCATGCCATCAAC+AGG | + | chr7.2:4213674-4213693 | None:intergenic | 55.0% | |
| CACCCCAATCATGAGCCACA+AGG | + | chr7.2:4213553-4213572 | None:intergenic | 55.0% | |
| CTTCCTGCGAGAGCCAAGAA+GGG | + | chr7.2:4214456-4214475 | None:intergenic | 55.0% | |
| GGGAGCTGAGAGCAACAATC+TGG | + | chr7.2:4213391-4213410 | None:intergenic | 55.0% | |
| GTACAAAGCCCCTCCCTTCT+TGG | - | chr7.2:4214440-4214459 | MS.gene37318:CDS | 55.0% | |
| TCTTCCTGCGAGAGCCAAGA+AGG | + | chr7.2:4214457-4214476 | None:intergenic | 55.0% | |
| ! | ATTGGGGTGCCATCGTTGGT+TGG | - | chr7.2:4213564-4213583 | MS.gene37318:intron | 55.0% |
| ! | CATGATTGGGGTGCCATCGT+TGG | - | chr7.2:4213560-4213579 | MS.gene37318:intron | 55.0% |
| ! | GAAGGGAGGGGCTTTGTACT+TGG | + | chr7.2:4214439-4214458 | None:intergenic | 55.0% |
| !! | GTTGGTCTCATCGACTCGCT+TGG | - | chr7.2:4213512-4213531 | MS.gene37318:intron | 55.0% |
| AGAGTTCGGGGAAGCCGTGA+AGG | + | chr7.2:4213352-4213371 | None:intergenic | 60.0% | |
| AGCGACCGCCCGATAACCAA+GGG | + | chr7.2:4213411-4213430 | None:intergenic | 60.0% | |
| CAGCTCCCTTGGTTATCGGG+CGG | - | chr7.2:4213403-4213422 | MS.gene37318:CDS | 60.0% | |
| CTGCGAGAGCCAAGAAGGGA+GGG | + | chr7.2:4214452-4214471 | None:intergenic | 60.0% | |
| TGCGAGAGCCAAGAAGGGAG+GGG | + | chr7.2:4214451-4214470 | None:intergenic | 60.0% | |
| TTCACGGCTTCCCCGAACTC+TGG | - | chr7.2:4213351-4213370 | MS.gene37318:CDS | 60.0% | |
| CCTGCGAGAGCCAAGAAGGG+AGG | + | chr7.2:4214453-4214472 | None:intergenic | 65.0% | |
| GAGCGACCGCCCGATAACCA+AGG | + | chr7.2:4213412-4213431 | None:intergenic | 65.0% | |
| GCGGTCGCTCCAGATCTTCG+TGG | - | chr7.2:4213422-4213441 | MS.gene37318:CDS | 65.0% | |
| ! | CCTCCCTTCTTGGCTCTCGC+AGG | - | chr7.2:4214450-4214469 | MS.gene37318:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4213260 | 4214551 | 4213260 | ID=MS.gene37318 |
| chr7.2 | mRNA | 4213260 | 4214551 | 4213260 | ID=MS.gene37318.t1;Parent=MS.gene37318 |
| chr7.2 | exon | 4214084 | 4214551 | 4214084 | ID=MS.gene37318.t1.exon1;Parent=MS.gene37318.t1 |
| chr7.2 | CDS | 4214084 | 4214551 | 4214084 | ID=cds.MS.gene37318.t1;Parent=MS.gene37318.t1 |
| chr7.2 | exon | 4213260 | 4213495 | 4213260 | ID=MS.gene37318.t1.exon2;Parent=MS.gene37318.t1 |
| chr7.2 | CDS | 4213260 | 4213495 | 4213260 | ID=cds.MS.gene37318.t1;Parent=MS.gene37318.t1 |
| Gene Sequence |
| Protein sequence |
