Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050922.t1 | XP_003626241.1 | 87.3 | 316 | 15 | 2 | 1 | 291 | 1 | 316 | 1.20E-154 | 555.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050922.t1 | I6YGS0 | 37.9 | 319 | 152 | 7 | 7 | 288 | 7 | 316 | 9.9e-54 | 211.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050922.t1 | G7KXM0 | 87.3 | 316 | 15 | 2 | 1 | 291 | 1 | 316 | 8.4e-155 | 555.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050922 | MS.gene072515 | 0.869202 | 3.69E-66 | -1.69E-46 |
| MS.gene050922 | MS.gene073310 | -0.801462 | 8.90E-49 | -1.69E-46 |
| MS.gene050922 | MS.gene37318 | 0.88503 | 1.15E-71 | -1.69E-46 |
| MS.gene050922 | MS.gene96348 | -0.801399 | 9.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050922 | MS.gene025707 | PPI |
| MS.gene050922 | MS.gene22955 | PPI |
| MS.gene035369 | MS.gene050922 | PPI |
| MS.gene035373 | MS.gene050922 | PPI |
| MS.gene76453 | MS.gene050922 | PPI |
| MS.gene050922 | MS.gene07001 | PPI |
| MS.gene050922 | MS.gene012063 | PPI |
| MS.gene050922 | MS.gene035371 | PPI |
| MS.gene035367 | MS.gene050922 | PPI |
| MS.gene050922 | MS.gene071502 | PPI |
| MS.gene066360 | MS.gene050922 | PPI |
| MS.gene050922 | MS.gene066361 | PPI |
| MS.gene77823 | MS.gene050922 | PPI |
| MS.gene89620 | MS.gene050922 | PPI |
| MS.gene050922 | MS.gene071500 | PPI |
| MS.gene071504 | MS.gene050922 | PPI |
| MS.gene050922 | MS.gene041604 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050922.t1 | MTR_7g112970 | 87.342 | 316 | 15 | 2 | 1 | 291 | 1 | 316 | 0.0 | 554 |
| MS.gene050922.t1 | MTR_7g112960 | 80.564 | 319 | 34 | 2 | 1 | 291 | 1 | 319 | 0.0 | 526 |
| MS.gene050922.t1 | MTR_7g112963 | 79.937 | 319 | 36 | 2 | 1 | 291 | 1 | 319 | 0.0 | 516 |
| MS.gene050922.t1 | MTR_7g113020 | 72.727 | 319 | 59 | 2 | 1 | 291 | 1 | 319 | 5.59e-173 | 481 |
| MS.gene050922.t1 | MTR_7g113030 | 72.100 | 319 | 61 | 2 | 1 | 291 | 1 | 319 | 2.39e-170 | 474 |
| MS.gene050922.t1 | MTR_7g113050 | 72.100 | 319 | 61 | 2 | 1 | 291 | 1 | 319 | 4.82e-170 | 473 |
| MS.gene050922.t1 | MTR_7g112615 | 70.846 | 319 | 65 | 2 | 1 | 291 | 1 | 319 | 1.29e-167 | 467 |
| MS.gene050922.t1 | MTR_7g112620 | 70.533 | 319 | 66 | 2 | 1 | 291 | 1 | 319 | 1.80e-166 | 464 |
| MS.gene050922.t1 | MTR_7g113010 | 78.292 | 281 | 33 | 2 | 1 | 253 | 1 | 281 | 3.29e-157 | 451 |
| MS.gene050922.t1 | MTR_4g005160 | 63.777 | 323 | 84 | 5 | 1 | 291 | 1 | 322 | 3.66e-148 | 418 |
| MS.gene050922.t1 | MTR_4g120240 | 58.125 | 320 | 104 | 5 | 1 | 291 | 37 | 355 | 9.20e-133 | 380 |
| MS.gene050922.t1 | MTR_7g108825 | 59.434 | 318 | 101 | 3 | 1 | 291 | 1 | 317 | 2.50e-132 | 378 |
| MS.gene050922.t1 | MTR_7g113050 | 70.168 | 238 | 43 | 2 | 1 | 210 | 1 | 238 | 3.63e-119 | 342 |
| MS.gene050922.t1 | MTR_7g112615 | 68.908 | 238 | 46 | 2 | 1 | 210 | 1 | 238 | 5.51e-117 | 336 |
| MS.gene050922.t1 | MTR_7g112615 | 84.906 | 159 | 24 | 0 | 1 | 159 | 1 | 159 | 2.99e-101 | 294 |
| MS.gene050922.t1 | MTR_8g076680 | 45.597 | 318 | 143 | 7 | 1 | 291 | 3 | 317 | 1.23e-96 | 287 |
| MS.gene050922.t1 | MTR_7g108825 | 57.384 | 237 | 73 | 3 | 1 | 210 | 1 | 236 | 5.10e-89 | 265 |
| MS.gene050922.t1 | MTR_1g083480 | 76.101 | 159 | 34 | 2 | 1 | 156 | 1 | 158 | 4.82e-88 | 260 |
| MS.gene050922.t1 | MTR_8g076680 | 44.304 | 237 | 104 | 5 | 1 | 210 | 3 | 238 | 9.79e-70 | 216 |
| MS.gene050922.t1 | MTR_3g024250 | 79.439 | 107 | 22 | 0 | 46 | 152 | 1 | 107 | 1.70e-57 | 181 |
| MS.gene050922.t1 | MTR_2g090240 | 33.956 | 321 | 170 | 7 | 1 | 290 | 1 | 310 | 9.87e-57 | 185 |
| MS.gene050922.t1 | MTR_2g090245 | 34.268 | 321 | 169 | 8 | 1 | 290 | 1 | 310 | 4.35e-56 | 183 |
| MS.gene050922.t1 | MTR_7g112910 | 44.082 | 245 | 62 | 7 | 72 | 291 | 1 | 195 | 3.05e-55 | 177 |
| MS.gene050922.t1 | MTR_4g089060 | 33.856 | 319 | 172 | 6 | 1 | 290 | 1 | 309 | 5.91e-55 | 180 |
| MS.gene050922.t1 | MTR_4g089040 | 33.542 | 319 | 173 | 6 | 1 | 290 | 1 | 309 | 3.11e-53 | 176 |
| MS.gene050922.t1 | MTR_4g089060 | 31.503 | 346 | 171 | 7 | 1 | 290 | 1 | 336 | 1.01e-49 | 167 |
| MS.gene050922.t1 | MTR_4g089060 | 41.916 | 167 | 92 | 1 | 1 | 167 | 1 | 162 | 2.86e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050922.t1 | AT3G05600 | 58.333 | 324 | 102 | 4 | 1 | 291 | 1 | 324 | 3.45e-137 | 391 |
| MS.gene050922.t1 | AT4G02340 | 57.729 | 317 | 107 | 3 | 1 | 291 | 1 | 316 | 5.26e-133 | 380 |
| MS.gene050922.t1 | AT4G15960 | 51.543 | 324 | 124 | 5 | 1 | 291 | 51 | 374 | 3.58e-117 | 342 |
| MS.gene050922.t1 | AT4G15955 | 53.488 | 301 | 124 | 4 | 5 | 291 | 6 | 304 | 2.02e-112 | 327 |
| MS.gene050922.t1 | AT2G26740 | 54.206 | 321 | 114 | 6 | 4 | 291 | 1 | 321 | 1.54e-111 | 325 |
| MS.gene050922.t1 | AT2G26750 | 52.188 | 320 | 121 | 6 | 4 | 291 | 1 | 320 | 8.81e-107 | 313 |
| MS.gene050922.t1 | AT3G05600 | 58.848 | 243 | 67 | 4 | 1 | 210 | 1 | 243 | 3.55e-98 | 288 |
| MS.gene050922.t1 | AT3G51000 | 47.003 | 317 | 137 | 6 | 4 | 291 | 5 | 319 | 7.47e-98 | 291 |
| MS.gene050922.t1 | AT4G15955 | 62.428 | 173 | 55 | 2 | 5 | 167 | 6 | 178 | 6.60e-76 | 229 |
| MS.gene050922.t1 | AT4G15955 | 60.116 | 173 | 59 | 2 | 5 | 167 | 6 | 178 | 1.96e-72 | 221 |
| MS.gene050922.t1 | AT4G12830 | 24.901 | 253 | 170 | 8 | 24 | 266 | 132 | 374 | 1.00e-12 | 68.2 |
Find 89 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACAACTTCCTCCAAATT+TGG | 0.197478 | 7.1:+3472114 | None:intergenic |
| ACATAGGCTTTAACTCTTTC+AGG | 0.203556 | 7.1:+3473705 | None:intergenic |
| CAAGAAAGATGTGCCAAATT+TGG | 0.205231 | 7.1:-3472127 | MS.gene050922:CDS |
| CTCTCAGCTCCCTTGGTTAT+CGG | 0.233890 | 7.1:-3473911 | MS.gene050922:CDS |
| TGATATCCTCAGCAGCTTCT+TGG | 0.242215 | 7.1:+3472064 | None:intergenic |
| CCATCAACAGGTTTCACTTT+GGG | 0.262116 | 7.1:+3473651 | None:intergenic |
| GATGGCATGCGAGCCTTATT+TGG | 0.268655 | 7.1:-3473633 | MS.gene050922:CDS |
| CTTCCTTGTGGCTCATGATT+GGG | 0.281967 | 7.1:-3473763 | MS.gene050922:CDS |
| TCTTCCTTGTGGCTCATGAT+TGG | 0.288857 | 7.1:-3473764 | MS.gene050922:CDS |
| ATAACAGGAACTAGGGAAAA+TGG | 0.297439 | 7.1:-3473000 | MS.gene050922:intron |
| GGTTTCACTTTGGGGTTTCT+TGG | 0.301325 | 7.1:+3473660 | None:intergenic |
| GTACAAAGCCCCTCCCTTCT+TGG | 0.301476 | 7.1:-3472869 | MS.gene050922:CDS |
| TCACCAGTTATGAACTTTAC+TGG | 0.310577 | 7.1:+3472207 | None:intergenic |
| AACCTGTTCTGGGCTATCTT+TGG | 0.320528 | 7.1:+3472965 | None:intergenic |
| CGCCATGAATACCAGAGTTC+GGG | 0.321570 | 7.1:+3473948 | None:intergenic |
| ATAATAGTCATCTCCAAATA+AGG | 0.326858 | 7.1:+3473620 | None:intergenic |
| GATTTAGTTTACACTTCTTC+TGG | 0.330124 | 7.1:-3472180 | MS.gene050922:CDS |
| GCTCCAGATCTTCGTGGTTA+TGG | 0.348958 | 7.1:-3473882 | MS.gene050922:CDS |
| ATGCTCTTGATAACCTGTTC+TGG | 0.358215 | 7.1:+3472954 | None:intergenic |
| CTATTATATCTGCAGATTCC+AGG | 0.362815 | 7.1:-3473604 | MS.gene050922:intron |
| TGTATAACTGCTTACCGAAC+TGG | 0.368608 | 7.1:+3473845 | None:intergenic |
| TTTGAAAAGACTGGATTTAG+TGG | 0.371587 | 7.1:-3472808 | MS.gene050922:CDS |
| GCTTCTAAATTTGAAAAGAC+TGG | 0.372902 | 7.1:-3472817 | MS.gene050922:CDS |
| TGAGATTTCTGTAGAAGTTA+AGG | 0.381104 | 7.1:+3472782 | None:intergenic |
| TTTGGAGGAAGTTGTTATAC+AGG | 0.383747 | 7.1:-3472109 | MS.gene050922:CDS |
| TCCCCGAACTCTGGTATTCA+TGG | 0.400658 | 7.1:-3473950 | MS.gene050922:CDS |
| GAGCTCACGGCAGCATGGAC+TGG | 0.405747 | 7.1:-3472246 | MS.gene050922:CDS |
| GTGCCAGTAAAGTTCATAAC+TGG | 0.409298 | 7.1:-3472210 | MS.gene050922:CDS |
| CATAGGCTTTAACTCTTTCA+GGG | 0.412776 | 7.1:+3473706 | None:intergenic |
| CCCAAAGTGAAACCTGTTGA+TGG | 0.418758 | 7.1:-3473651 | MS.gene050922:CDS |
| TCTCAGCTCCCTTGGTTATC+GGG | 0.422067 | 7.1:-3473910 | MS.gene050922:CDS |
| CAATCTATATAACAGGAACT+AGG | 0.423694 | 7.1:-3473008 | MS.gene050922:intron |
| TGTTTATGTTCATAGAAATT+GGG | 0.428721 | 7.1:-3472268 | MS.gene050922:intron |
| ATTGTTGCTCTCAGCTCCCT+TGG | 0.441960 | 7.1:-3473918 | MS.gene050922:CDS |
| GCGCCATGAATACCAGAGTT+CGG | 0.442920 | 7.1:+3473947 | None:intergenic |
| TCACCATAACCACGAAGATC+TGG | 0.446912 | 7.1:+3473879 | None:intergenic |
| TCCCTTCTTGGCTCTCGAGC+AGG | 0.451907 | 7.1:-3472857 | MS.gene050922:CDS |
| CCGTGAAGGAACAAAACAAC+TGG | 0.460486 | 7.1:+3473975 | None:intergenic |
| TGCCAAAGATAGCCCAGAAC+AGG | 0.465178 | 7.1:-3472967 | MS.gene050922:intron |
| GCCATCAACAGGTTTCACTT+TGG | 0.465827 | 7.1:+3473650 | None:intergenic |
| AAGGCTCGCATGCCATCAAC+AGG | 0.466113 | 7.1:+3473639 | None:intergenic |
| CATCAACAGGTTTCACTTTG+GGG | 0.472252 | 7.1:+3473652 | None:intergenic |
| CACTTGGTTGGTGACATCGT+TGG | 0.474476 | 7.1:-3473816 | MS.gene050922:CDS |
| GGGAGCTGAGAGCAACAATC+TGG | 0.483314 | 7.1:+3473922 | None:intergenic |
| TATACAATCTTCCACTTGGT+TGG | 0.484085 | 7.1:-3473828 | MS.gene050922:CDS |
| AAAATGCATATTGCAGAGAA+AGG | 0.487741 | 7.1:-3474008 | MS.gene050922:CDS |
| TTCCTTGTGGCTCATGATTG+GGG | 0.491817 | 7.1:-3473762 | MS.gene050922:CDS |
| TTCACGGCTTCCCCGAACTC+TGG | 0.493835 | 7.1:-3473959 | MS.gene050922:CDS |
| TGCTCTTGATAACCTGTTCT+GGG | 0.497008 | 7.1:+3472955 | None:intergenic |
| GCTCGAGAGCCAAGAAGGGA+GGG | 0.513147 | 7.1:+3472860 | None:intergenic |
| GTATAACTGCTTACCGAACT+GGG | 0.514137 | 7.1:+3473846 | None:intergenic |
| CTCGAGAGCCAAGAAGGGAG+GGG | 0.514322 | 7.1:+3472861 | None:intergenic |
| GTTGGTCTCATCGACTCGCT+TGG | 0.518409 | 7.1:-3473798 | MS.gene050922:CDS |
| CATGATTGGGGTGCCATCGT+TGG | 0.524943 | 7.1:-3473750 | MS.gene050922:CDS |
| GAAAGATGTGCCAAATTTGG+AGG | 0.528499 | 7.1:-3472124 | MS.gene050922:CDS |
| GAGGAAGTTGTTATACAGGA+TGG | 0.538845 | 7.1:-3472105 | MS.gene050922:CDS |
| AATCTATATAACAGGAACTA+GGG | 0.539991 | 7.1:-3473007 | MS.gene050922:intron |
| ACCACTCTCGATGTATTGCT+TGG | 0.548140 | 7.1:+3472155 | None:intergenic |
| CAGTTATACAATCTTCCACT+TGG | 0.551753 | 7.1:-3473832 | MS.gene050922:CDS |
| TTCCTGCTCGAGAGCCAAGA+AGG | 0.552531 | 7.1:+3472855 | None:intergenic |
| TGCTCGAGAGCCAAGAAGGG+AGG | 0.555064 | 7.1:+3472859 | None:intergenic |
| ATTGCAGAGAAAGGAAAAGA+AGG | 0.557400 | 7.1:-3473999 | MS.gene050922:CDS |
| TGACACTGATGTCCCCAGTT+CGG | 0.560761 | 7.1:-3473859 | MS.gene050922:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.567993 | 7.1:-3474035 | MS.gene050922:CDS |
| CGGAACACTCAGACACACAT+AGG | 0.568178 | 7.1:+3473689 | None:intergenic |
| ATTGGGGTGCCATCGTTGGT+TGG | 0.587085 | 7.1:-3473746 | MS.gene050922:CDS |
| GAAAAGACTGGATTTAGTGG+TGG | 0.588504 | 7.1:-3472805 | MS.gene050922:CDS |
| AGAGTTCGGGGAAGCCGTGA+AGG | 0.588682 | 7.1:+3473961 | None:intergenic |
| TCCTGCTCGAGAGCCAAGAA+GGG | 0.591417 | 7.1:+3472856 | None:intergenic |
| GCGGTCGCTCCAGATCTTCG+TGG | 0.594935 | 7.1:-3473888 | MS.gene050922:CDS |
| TCATAGAAATTGGGAGCTCA+CGG | 0.607116 | 7.1:-3472259 | MS.gene050922:intron |
| ATTGGGAGCTCACGGCAGCA+TGG | 0.608978 | 7.1:-3472251 | MS.gene050922:CDS |
| TTGGGGTTTCTTGGTAACAA+CGG | 0.609164 | 7.1:+3473669 | None:intergenic |
| GAGCGACCGCCCGATAACCA+AGG | 0.609516 | 7.1:+3473901 | None:intergenic |
| CAACAACCAAGAAGCTGCTG+AGG | 0.614308 | 7.1:-3472070 | MS.gene050922:CDS |
| AGCGACCGCCCGATAACCAA+GGG | 0.616077 | 7.1:+3473902 | None:intergenic |
| CACCCCAATCATGAGCCACA+AGG | 0.623498 | 7.1:+3473760 | None:intergenic |
| AGCTGAGAGCAACAATCTGG+TGG | 0.629150 | 7.1:+3473925 | None:intergenic |
| CAACGATGTCACCAACCAAG+TGG | 0.634014 | 7.1:+3473817 | None:intergenic |
| AGTTGTTATACAGGATGGTG+TGG | 0.637871 | 7.1:-3472100 | MS.gene050922:CDS |
| AACACCAAAGAAGAGATGGA+AGG | 0.649645 | 7.1:-3474065 | None:intergenic |
| ACCAAGCAATACATCGAGAG+TGG | 0.651403 | 7.1:-3472156 | MS.gene050922:CDS |
| TGTTGATCAAGTCTTCCTTG+TGG | 0.670046 | 7.1:-3473775 | MS.gene050922:CDS |
| AAGCAATACATCGAGAGTGG+TGG | 0.673299 | 7.1:-3472153 | MS.gene050922:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.1:-3474045 | MS.gene050922:CDS |
| TATAACTGCTTACCGAACTG+GGG | 0.680481 | 7.1:+3473847 | None:intergenic |
| GCAAAGATACCAACCAACGA+TGG | 0.687950 | 7.1:+3473737 | None:intergenic |
| CAGCTCCCTTGGTTATCGGG+CGG | 0.692571 | 7.1:-3473907 | MS.gene050922:CDS |
| GCCATGAATACCAGAGTTCG+GGG | 0.700987 | 7.1:+3473949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACTTTATATTTATTTTG+AGG | - | chr7.1:3473486-3473505 | MS.gene050922:intron | 10.0% |
| !! | AATAGATTATATTAATGGAA+TGG | + | chr7.1:3472994-3473013 | None:intergenic | 15.0% |
| !! | ATATAACTAACATTTACATT+TGG | + | chr7.1:3473021-3473040 | None:intergenic | 15.0% |
| !! | ATCATGTATTTCAAATAAAT+GGG | + | chr7.1:3472706-3472725 | None:intergenic | 15.0% |
| !! | ATCTTAACAGATTATTTAAA+TGG | - | chr7.1:3472574-3472593 | MS.gene050922:intron | 15.0% |
| !! | GCAATAATAGATTATATTAA+TGG | + | chr7.1:3472999-3473018 | None:intergenic | 15.0% |
| !! | TAAATTATTCATATCCATAT+TGG | + | chr7.1:3473601-3473620 | None:intergenic | 15.0% |
| !! | TATCATGTATTTCAAATAAA+TGG | + | chr7.1:3472707-3472726 | None:intergenic | 15.0% |
| !! | TTTGATAAATAAATAAAGTG+TGG | - | chr7.1:3472617-3472636 | MS.gene050922:intron | 15.0% |
| !!! | TATTTATTTTGAGGTTTTTA+TGG | - | chr7.1:3473495-3473514 | MS.gene050922:intron | 15.0% |
| !!! | TTTTAACTTGATTAAGTAAA+TGG | - | chr7.1:3472761-3472780 | MS.gene050922:intron | 15.0% |
| !! | AAAAATGGCAAGAAAAAATA+AGG | + | chr7.1:3473333-3473352 | None:intergenic | 20.0% |
| !! | AAAATATAAGAATTCAAACC+TGG | + | chr7.1:3472496-3472515 | None:intergenic | 20.0% |
| !! | TAACAGATTATTTAAATGGA+TGG | - | chr7.1:3472578-3472597 | MS.gene050922:intron | 20.0% |
| !! | TCATGTATTTCAAATAAATG+GGG | + | chr7.1:3472705-3472724 | None:intergenic | 20.0% |
| !! | TGTTTATGTTCATAGAAATT+GGG | - | chr7.1:3473811-3473830 | MS.gene050922:CDS | 20.0% |
| !! | TTATCTCATATGTTAATCAT+AGG | - | chr7.1:3472938-3472957 | MS.gene050922:intron | 20.0% |
| !!! | AGATAACCTTTTTTTTTTAG+GGG | + | chr7.1:3472924-3472943 | None:intergenic | 20.0% |
| !!! | GAGATAACCTTTTTTTTTTA+GGG | + | chr7.1:3472925-3472944 | None:intergenic | 20.0% |
| !!! | TATTTCTATTTGATCCAATA+TGG | - | chr7.1:3473584-3473603 | MS.gene050922:intron | 20.0% |
| !!! | TGAGATAACCTTTTTTTTTT+AGG | + | chr7.1:3472926-3472945 | None:intergenic | 20.0% |
| ! | AAATCAGTTGAATAAGATGA+GGG | + | chr7.1:3473441-3473460 | None:intergenic | 25.0% |
| ! | AATCTATATAACAGGAACTA+GGG | - | chr7.1:3473072-3473091 | MS.gene050922:intron | 25.0% |
| ! | ATAATAGTCATCTCCAAATA+AGG | + | chr7.1:3472462-3472481 | None:intergenic | 25.0% |
| ! | ATGAACATAAACACAAACAT+TGG | + | chr7.1:3473804-3473823 | None:intergenic | 25.0% |
| ! | CAAATAGAAATATAAGTGCA+AGG | + | chr7.1:3473576-3473595 | None:intergenic | 25.0% |
| ! | GTATAACAAATTAGTTACAG+AGG | + | chr7.1:3473471-3473490 | None:intergenic | 25.0% |
| ! | GTGTTTATGTTCATAGAAAT+TGG | - | chr7.1:3473810-3473829 | MS.gene050922:CDS | 25.0% |
| ! | TATGTTCCCCTAAAAAAAAA+AGG | - | chr7.1:3472915-3472934 | MS.gene050922:intron | 25.0% |
| AAAATGCATATTGCAGAGAA+AGG | - | chr7.1:3472071-3472090 | MS.gene050922:CDS | 30.0% | |
| AATCAGACAATCTTAACAGA+AGG | - | chr7.1:3473722-3473741 | MS.gene050922:CDS | 30.0% | |
| ACTTAAGGCCTTAGAATATT+GGG | + | chr7.1:3473522-3473541 | None:intergenic | 30.0% | |
| ATAACAACTTCCTCCAAATT+TGG | + | chr7.1:3473968-3473987 | None:intergenic | 30.0% | |
| CAAATCAGTTGAATAAGATG+AGG | + | chr7.1:3473442-3473461 | None:intergenic | 30.0% | |
| CAATCTATATAACAGGAACT+AGG | - | chr7.1:3473071-3473090 | MS.gene050922:intron | 30.0% | |
| CTAGTTCCTGTTATATAGAT+TGG | + | chr7.1:3473073-3473092 | None:intergenic | 30.0% | |
| CTCATCTTATTCAACTGATT+TGG | - | chr7.1:3473440-3473459 | MS.gene050922:intron | 30.0% | |
| GCTTCTAAATTTGAAAAGAC+TGG | - | chr7.1:3473262-3473281 | MS.gene050922:intron | 30.0% | |
| GGTACTAGAAAATACTACTT+TGG | + | chr7.1:3472657-3472676 | None:intergenic | 30.0% | |
| TACACAATTGTAATATCCGA+AGG | + | chr7.1:3473638-3473657 | None:intergenic | 30.0% | |
| TGAGATTTCTGTAGAAGTTA+AGG | + | chr7.1:3473300-3473319 | None:intergenic | 30.0% | |
| TTTGAAAAGACTGGATTTAG+TGG | - | chr7.1:3473271-3473290 | MS.gene050922:intron | 30.0% | |
| ! | ATCAGTTGTTGTTGATCTAA+TGG | - | chr7.1:3472962-3472981 | MS.gene050922:intron | 30.0% |
| ! | GATTTAGTTTACACTTCTTC+TGG | - | chr7.1:3473899-3473918 | MS.gene050922:CDS | 30.0% |
| ! | TAATTGTGCTTTTAGTCCTT+CGG | - | chr7.1:3473619-3473638 | MS.gene050922:CDS | 30.0% |
| !! | ATGAGATAAAAAGCGTTCTT+TGG | + | chr7.1:3473186-3473205 | None:intergenic | 30.0% |
| !! | TGAGATAAAAAGCGTTCTTT+GGG | + | chr7.1:3473185-3473204 | None:intergenic | 30.0% |
| ACAGTCTAAGCTAAGACTTA+AGG | + | chr7.1:3473537-3473556 | None:intergenic | 35.0% | |
| ATAACAGGAACTAGGGAAAA+TGG | - | chr7.1:3473079-3473098 | MS.gene050922:intron | 35.0% | |
| ATTAACTAAATGTCTCGTGC+CGG | - | chr7.1:3473357-3473376 | MS.gene050922:intron | 35.0% | |
| ATTGCAGAGAAAGGAAAAGA+AGG | - | chr7.1:3472080-3472099 | MS.gene050922:CDS | 35.0% | |
| CAAGAAAGATGTGCCAAATT+TGG | - | chr7.1:3473952-3473971 | MS.gene050922:CDS | 35.0% | |
| CAGTTATACAATCTTCCACT+TGG | - | chr7.1:3472247-3472266 | MS.gene050922:CDS | 35.0% | |
| CCAACTCCAATCTATATAAC+AGG | - | chr7.1:3473064-3473083 | MS.gene050922:intron | 35.0% | |
| CCTGTTATATAGATTGGAGT+TGG | + | chr7.1:3473067-3473086 | None:intergenic | 35.0% | |
| CTATTATATCTGCAGATTCC+AGG | - | chr7.1:3472475-3472494 | MS.gene050922:intron | 35.0% | |
| CTTAAGGCCTTAGAATATTG+GGG | + | chr7.1:3473521-3473540 | None:intergenic | 35.0% | |
| GACTTAAGGCCTTAGAATAT+TGG | + | chr7.1:3473523-3473542 | None:intergenic | 35.0% | |
| TATACAATCTTCCACTTGGT+TGG | - | chr7.1:3472251-3472270 | MS.gene050922:CDS | 35.0% | |
| TCACCAGTTATGAACTTTAC+TGG | + | chr7.1:3473875-3473894 | None:intergenic | 35.0% | |
| TTACTCTTGCTCACTTCAAA+TGG | - | chr7.1:3472542-3472561 | MS.gene050922:intron | 35.0% | |
| TTGAAGTGAGCAAGAGTAAA+GGG | + | chr7.1:3472541-3472560 | None:intergenic | 35.0% | |
| TTTATGGCCCCAATATTCTA+AGG | - | chr7.1:3473511-3473530 | MS.gene050922:intron | 35.0% | |
| TTTGGAGGAAGTTGTTATAC+AGG | - | chr7.1:3473970-3473989 | MS.gene050922:CDS | 35.0% | |
| ! | ACATAGGCTTTAACTCTTTC+AGG | + | chr7.1:3472377-3472396 | None:intergenic | 35.0% |
| ! | CATAGGCTTTAACTCTTTCA+GGG | + | chr7.1:3472376-3472395 | None:intergenic | 35.0% |
| ! | GTCATTTGAAACAAGAGTCT+GGG | - | chr7.1:3472873-3472892 | MS.gene050922:intron | 35.0% |
| ! | TACCAAACTCGTTTTCCTTA+CGG | - | chr7.1:3472673-3472692 | MS.gene050922:intron | 35.0% |
| ! | TGTCATTTGAAACAAGAGTC+TGG | - | chr7.1:3472872-3472891 | MS.gene050922:intron | 35.0% |
| ! | TTTGAAGTGAGCAAGAGTAA+AGG | + | chr7.1:3472542-3472561 | None:intergenic | 35.0% |
| ACCAACCATGTGTATGTATG+TGG | + | chr7.1:3473401-3473420 | None:intergenic | 40.0% | |
| AGAAATATAAGTGCAAGGCC+AGG | + | chr7.1:3473571-3473590 | None:intergenic | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.1:3472034-3472053 | MS.gene050922:CDS | 40.0% | |
| AGTTGTTATACAGGATGGTG+TGG | - | chr7.1:3473979-3473998 | MS.gene050922:CDS | 40.0% | |
| ATGTGCCACATACATACACA+TGG | - | chr7.1:3473393-3473412 | MS.gene050922:intron | 40.0% | |
| CATCAACAGGTTTCACTTTG+GGG | + | chr7.1:3472430-3472449 | None:intergenic | 40.0% | |
| CCATCAACAGGTTTCACTTT+GGG | + | chr7.1:3472431-3472450 | None:intergenic | 40.0% | |
| CGTTCTTTGGGTAAGATTAG+TGG | + | chr7.1:3473173-3473192 | None:intergenic | 40.0% | |
| GAAAAGACTGGATTTAGTGG+TGG | - | chr7.1:3473274-3473293 | MS.gene050922:intron | 40.0% | |
| GAAAGATGTGCCAAATTTGG+AGG | - | chr7.1:3473955-3473974 | MS.gene050922:CDS | 40.0% | |
| GAGGAAGTTGTTATACAGGA+TGG | - | chr7.1:3473974-3473993 | MS.gene050922:CDS | 40.0% | |
| GTATAACTGCTTACCGAACT+GGG | + | chr7.1:3472236-3472255 | None:intergenic | 40.0% | |
| GTGCCAGTAAAGTTCATAAC+TGG | - | chr7.1:3473869-3473888 | MS.gene050922:CDS | 40.0% | |
| TATAACTGCTTACCGAACTG+GGG | + | chr7.1:3472235-3472254 | None:intergenic | 40.0% | |
| TCATAGAAATTGGGAGCTCA+CGG | - | chr7.1:3473820-3473839 | MS.gene050922:CDS | 40.0% | |
| TGTATAACTGCTTACCGAAC+TGG | + | chr7.1:3472237-3472256 | None:intergenic | 40.0% | |
| TGTTGATCAAGTCTTCCTTG+TGG | - | chr7.1:3472304-3472323 | MS.gene050922:intron | 40.0% | |
| ! | ATGCTCTTGATAACCTGTTC+TGG | + | chr7.1:3473128-3473147 | None:intergenic | 40.0% |
| ! | GTTATCAAGAGCATGCTTAC+AGG | - | chr7.1:3473134-3473153 | MS.gene050922:intron | 40.0% |
| ! | TGCTCTTGATAACCTGTTCT+GGG | + | chr7.1:3473127-3473146 | None:intergenic | 40.0% |
| ! | TTGGGGTTTCTTGGTAACAA+CGG | + | chr7.1:3472413-3472432 | None:intergenic | 40.0% |
| ! | TTTGAAACAAGAGTCTGGGA+AGG | - | chr7.1:3472877-3472896 | MS.gene050922:intron | 40.0% |
| !! | CCAGTTGTTTTGTTCCTTCA+CGG | - | chr7.1:3472104-3472123 | MS.gene050922:CDS | 40.0% |
| AAGCAATACATCGAGAGTGG+TGG | - | chr7.1:3473926-3473945 | MS.gene050922:CDS | 45.0% | |
| ACCAAGCAATACATCGAGAG+TGG | - | chr7.1:3473923-3473942 | MS.gene050922:CDS | 45.0% | |
| ACCACTCTCGATGTATTGCT+TGG | + | chr7.1:3473927-3473946 | None:intergenic | 45.0% | |
| AGCCGTAAGGAAAACGAGTT+TGG | + | chr7.1:3472678-3472697 | None:intergenic | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.1:3472044-3472063 | MS.gene050922:CDS | 45.0% | |
| CCCAAAGTGAAACCTGTTGA+TGG | - | chr7.1:3472428-3472447 | MS.gene050922:intron | 45.0% | |
| CCGTGAAGGAACAAAACAAC+TGG | + | chr7.1:3472107-3472126 | None:intergenic | 45.0% | |
| CTTCCTTGTGGCTCATGATT+GGG | - | chr7.1:3472316-3472335 | MS.gene050922:intron | 45.0% | |
| GCAAAGATACCAACCAACGA+TGG | + | chr7.1:3472345-3472364 | None:intergenic | 45.0% | |
| GCCACATACATACACATGGT+TGG | - | chr7.1:3473397-3473416 | MS.gene050922:intron | 45.0% | |
| GCCATCAACAGGTTTCACTT+TGG | + | chr7.1:3472432-3472451 | None:intergenic | 45.0% | |
| TAAATGGGGAAAGAGCCGTA+AGG | + | chr7.1:3472691-3472710 | None:intergenic | 45.0% | |
| TCACCATAACCACGAAGATC+TGG | + | chr7.1:3472203-3472222 | None:intergenic | 45.0% | |
| TCTTCCTTGTGGCTCATGAT+TGG | - | chr7.1:3472315-3472334 | MS.gene050922:intron | 45.0% | |
| TGATATCCTCAGCAGCTTCT+TGG | + | chr7.1:3474018-3474037 | None:intergenic | 45.0% | |
| TTCCTTGTGGCTCATGATTG+GGG | - | chr7.1:3472317-3472336 | MS.gene050922:intron | 45.0% | |
| ! | AACCTGTTCTGGGCTATCTT+TGG | + | chr7.1:3473117-3473136 | None:intergenic | 45.0% |
| ! | ACATACACATGGTTGGTCGA+AGG | - | chr7.1:3473404-3473423 | MS.gene050922:intron | 45.0% |
| ! | TCAAGAGCATGCTTACAGGT+CGG | - | chr7.1:3473138-3473157 | MS.gene050922:intron | 45.0% |
| !! | GGTTTCACTTTGGGGTTTCT+TGG | + | chr7.1:3472422-3472441 | None:intergenic | 45.0% |
| !! | ATTTAGTTAATTTAAAAAAA+TGG | + | chr7.1:3473348-3473367 | None:intergenic | 5.0% |
| AGACTGTCTAACCCTTAGCC+TGG | - | chr7.1:3473550-3473569 | MS.gene050922:intron | 50.0% | |
| AGCTGAGAGCAACAATCTGG+TGG | + | chr7.1:3472157-3472176 | None:intergenic | 50.0% | |
| ATAAGTGCAAGGCCAGGCTA+AGG | + | chr7.1:3473565-3473584 | None:intergenic | 50.0% | |
| ATGCTTACAGGTCGGACTAC+TGG | - | chr7.1:3473146-3473165 | MS.gene050922:intron | 50.0% | |
| ATTGTTGCTCTCAGCTCCCT+TGG | - | chr7.1:3472161-3472180 | MS.gene050922:CDS | 50.0% | |
| CAACAACCAAGAAGCTGCTG+AGG | - | chr7.1:3474009-3474028 | MS.gene050922:CDS | 50.0% | |
| CAACGATGTCACCAACCAAG+TGG | + | chr7.1:3472265-3472284 | None:intergenic | 50.0% | |
| CGCCATGAATACCAGAGTTC+GGG | + | chr7.1:3472134-3472153 | None:intergenic | 50.0% | |
| CGGAACACTCAGACACACAT+AGG | + | chr7.1:3472393-3472412 | None:intergenic | 50.0% | |
| CTCTCAGCTCCCTTGGTTAT+CGG | - | chr7.1:3472168-3472187 | MS.gene050922:CDS | 50.0% | |
| GCACATGTCACATGATCGAC+CGG | + | chr7.1:3473379-3473398 | None:intergenic | 50.0% | |
| GCCATGAATACCAGAGTTCG+GGG | + | chr7.1:3472133-3472152 | None:intergenic | 50.0% | |
| GCGCCATGAATACCAGAGTT+CGG | + | chr7.1:3472135-3472154 | None:intergenic | 50.0% | |
| GCTCCAGATCTTCGTGGTTA+TGG | - | chr7.1:3472197-3472216 | MS.gene050922:CDS | 50.0% | |
| TAAGTGCAAGGCCAGGCTAA+GGG | + | chr7.1:3473564-3473583 | None:intergenic | 50.0% | |
| TCCCCGAACTCTGGTATTCA+TGG | - | chr7.1:3472129-3472148 | MS.gene050922:CDS | 50.0% | |
| TCTCAGCTCCCTTGGTTATC+GGG | - | chr7.1:3472169-3472188 | MS.gene050922:CDS | 50.0% | |
| TGACACTGATGTCCCCAGTT+CGG | - | chr7.1:3472220-3472239 | MS.gene050922:CDS | 50.0% | |
| TGCCAAAGATAGCCCAGAAC+AGG | - | chr7.1:3473112-3473131 | MS.gene050922:intron | 50.0% | |
| !! | CACTTGGTTGGTGACATCGT+TGG | - | chr7.1:3472263-3472282 | MS.gene050922:intron | 50.0% |
| !! | GATGGCATGCGAGCCTTATT+TGG | - | chr7.1:3472446-3472465 | MS.gene050922:intron | 50.0% |
| AAGGCTCGCATGCCATCAAC+AGG | + | chr7.1:3472443-3472462 | None:intergenic | 55.0% | |
| CACCCCAATCATGAGCCACA+AGG | + | chr7.1:3472322-3472341 | None:intergenic | 55.0% | |
| GGGAGCTGAGAGCAACAATC+TGG | + | chr7.1:3472160-3472179 | None:intergenic | 55.0% | |
| GTACAAAGCCCCTCCCTTCT+TGG | - | chr7.1:3473210-3473229 | MS.gene050922:intron | 55.0% | |
| TCCTGCTCGAGAGCCAAGAA+GGG | + | chr7.1:3473226-3473245 | None:intergenic | 55.0% | |
| TTCCTGCTCGAGAGCCAAGA+AGG | + | chr7.1:3473227-3473246 | None:intergenic | 55.0% | |
| ! | ATTGGGGTGCCATCGTTGGT+TGG | - | chr7.1:3472333-3472352 | MS.gene050922:intron | 55.0% |
| ! | CATGATTGGGGTGCCATCGT+TGG | - | chr7.1:3472329-3472348 | MS.gene050922:intron | 55.0% |
| ! | GAAGGGAGGGGCTTTGTACT+TGG | + | chr7.1:3473209-3473228 | None:intergenic | 55.0% |
| !! | GTTGGTCTCATCGACTCGCT+TGG | - | chr7.1:3472281-3472300 | MS.gene050922:intron | 55.0% |
| AGAGTTCGGGGAAGCCGTGA+AGG | + | chr7.1:3472121-3472140 | None:intergenic | 60.0% | |
| AGCGACCGCCCGATAACCAA+GGG | + | chr7.1:3472180-3472199 | None:intergenic | 60.0% | |
| ATTGGGAGCTCACGGCAGCA+TGG | - | chr7.1:3473828-3473847 | MS.gene050922:CDS | 60.0% | |
| CAGCTCCCTTGGTTATCGGG+CGG | - | chr7.1:3472172-3472191 | MS.gene050922:CDS | 60.0% | |
| CTCGAGAGCCAAGAAGGGAG+GGG | + | chr7.1:3473221-3473240 | None:intergenic | 60.0% | |
| GCTCGAGAGCCAAGAAGGGA+GGG | + | chr7.1:3473222-3473241 | None:intergenic | 60.0% | |
| TGCTCGAGAGCCAAGAAGGG+AGG | + | chr7.1:3473223-3473242 | None:intergenic | 60.0% | |
| TTCACGGCTTCCCCGAACTC+TGG | - | chr7.1:3472120-3472139 | MS.gene050922:CDS | 60.0% | |
| ! | TCCCTTCTTGGCTCTCGAGC+AGG | - | chr7.1:3473222-3473241 | MS.gene050922:intron | 60.0% |
| GAGCGACCGCCCGATAACCA+AGG | + | chr7.1:3472181-3472200 | None:intergenic | 65.0% | |
| GAGCTCACGGCAGCATGGAC+TGG | - | chr7.1:3473833-3473852 | MS.gene050922:CDS | 65.0% | |
| GCGGTCGCTCCAGATCTTCG+TGG | - | chr7.1:3472191-3472210 | MS.gene050922:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3472029 | 3474072 | 3472029 | ID=MS.gene050922 |
| chr7.1 | mRNA | 3472029 | 3474072 | 3472029 | ID=MS.gene050922.t1;Parent=MS.gene050922 |
| chr7.1 | exon | 3473605 | 3474072 | 3473605 | ID=MS.gene050922.t1.exon1;Parent=MS.gene050922.t1 |
| chr7.1 | CDS | 3473605 | 3474072 | 3473605 | ID=cds.MS.gene050922.t1;Parent=MS.gene050922.t1 |
| chr7.1 | exon | 3472968 | 3473015 | 3472968 | ID=MS.gene050922.t1.exon2;Parent=MS.gene050922.t1 |
| chr7.1 | CDS | 3472968 | 3473015 | 3472968 | ID=cds.MS.gene050922.t1;Parent=MS.gene050922.t1 |
| chr7.1 | exon | 3472778 | 3472890 | 3472778 | ID=MS.gene050922.t1.exon3;Parent=MS.gene050922.t1 |
| chr7.1 | CDS | 3472778 | 3472890 | 3472778 | ID=cds.MS.gene050922.t1;Parent=MS.gene050922.t1 |
| chr7.1 | exon | 3472029 | 3472275 | 3472029 | ID=MS.gene050922.t1.exon4;Parent=MS.gene050922.t1 |
| chr7.1 | CDS | 3472029 | 3472275 | 3472029 | ID=cds.MS.gene050922.t1;Parent=MS.gene050922.t1 |
| Gene Sequence |
| Protein sequence |
