AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37404

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37404.t1 MTR_3g104750 95.732 164 7 0 1 164 1 164 3.33e-107 303
MS.gene37404.t1 MTR_1g015140 60.116 173 45 7 1 162 1 160 8.95e-61 186
MS.gene37404.t1 MTR_8g092010 48.052 154 66 6 9 160 23 164 8.37e-36 123
MS.gene37404.t1 MTR_1g086790 63.095 84 31 0 79 162 133 216 4.63e-32 117
MS.gene37404.t1 MTR_7g109800 59.524 84 34 0 79 162 120 203 9.17e-32 115
MS.gene37404.t1 MTR_2g033820 69.333 75 23 0 88 162 187 261 5.73e-31 115
MS.gene37404.t1 MTR_3g095040 42.373 177 67 8 5 162 16 176 6.32e-31 111
MS.gene37404.t1 MTR_5g043880 66.250 80 26 1 81 160 102 180 3.92e-30 110
MS.gene37404.t1 MTR_4g094588 67.606 71 23 0 91 161 165 235 8.97e-30 111
MS.gene37404.t1 MTR_3g095080 60.811 74 29 0 87 160 151 224 1.58e-29 108
MS.gene37404.t1 MTR_3g095080 60.811 74 29 0 87 160 127 200 1.99e-29 107
MS.gene37404.t1 MTR_8g096730 57.143 77 33 0 85 161 51 127 3.73e-29 105
MS.gene37404.t1 MTR_7g028415 63.768 69 25 0 93 161 82 150 4.16e-28 102
MS.gene37404.t1 MTR_7g028710 63.768 69 25 0 93 161 82 150 4.16e-28 102
MS.gene37404.t1 MTR_5g091390 65.714 70 24 0 91 160 144 213 1.11e-27 105
MS.gene37404.t1 MTR_8g007270 46.729 107 51 1 60 160 104 210 1.15e-27 103
MS.gene37404.t1 MTR_4g122530 62.667 75 28 0 88 162 192 266 1.39e-27 106
MS.gene37404.t1 MTR_5g094430 59.211 76 31 0 85 160 211 286 1.56e-27 106
MS.gene37404.t1 MTR_5g094430 51.724 58 27 1 104 161 66 122 1.07e-11 62.0
MS.gene37404.t1 MTR_5g094430 59.211 76 31 0 85 160 233 308 1.95e-27 106
MS.gene37404.t1 MTR_5g094430 51.724 58 27 1 104 161 88 144 9.74e-12 62.4
MS.gene37404.t1 MTR_5g094430 59.211 76 31 0 85 160 345 420 2.12e-27 107
MS.gene37404.t1 MTR_5g094430 51.724 58 27 1 104 161 200 256 1.08e-11 62.4
MS.gene37404.t1 MTR_3g056100 60.526 76 30 0 85 160 383 458 2.50e-27 107
MS.gene37404.t1 MTR_3g056100 38.542 96 48 2 66 161 215 299 2.74e-12 63.9
MS.gene37404.t1 MTR_3g056100 60.526 76 30 0 85 160 239 314 2.57e-27 106
MS.gene37404.t1 MTR_3g056100 51.724 58 27 1 104 161 99 155 3.74e-12 63.5
MS.gene37404.t1 MTR_3g056100 60.526 76 30 0 85 160 396 471 2.67e-27 107
MS.gene37404.t1 MTR_3g056100 38.542 96 48 2 66 161 215 299 2.65e-12 63.9
MS.gene37404.t1 MTR_3g056100 60.526 76 30 0 85 160 252 327 2.74e-27 106
MS.gene37404.t1 MTR_3g056100 51.724 58 27 1 104 161 99 155 3.40e-12 63.5
MS.gene37404.t1 MTR_3g009470 58.228 79 33 0 82 160 473 551 4.00e-27 106
MS.gene37404.t1 MTR_3g009470 50.000 58 28 1 104 161 280 336 3.41e-12 63.9
MS.gene37404.t1 MTR_8g092140 58.667 75 30 1 87 160 142 216 4.41e-27 102
MS.gene37404.t1 MTR_7g011820 55.844 77 34 0 84 160 390 466 6.27e-27 105
MS.gene37404.t1 MTR_7g011820 50.877 57 27 1 104 160 228 283 1.03e-11 62.4
MS.gene37404.t1 MTR_3g031220 52.174 92 43 1 69 160 331 421 2.09e-26 104
MS.gene37404.t1 MTR_3g031220 47.222 72 33 2 94 161 184 254 1.14e-15 73.6
MS.gene37404.t1 MTR_4g013260 55.263 76 34 0 85 160 317 392 4.31e-26 103
MS.gene37404.t1 MTR_4g013260 51.724 58 28 0 104 161 184 241 4.39e-16 74.7
MS.gene37404.t1 MTR_5g042920 55.263 76 34 0 85 160 301 376 6.42e-26 102
MS.gene37404.t1 MTR_5g042920 50.877 57 27 1 104 160 151 206 5.74e-12 62.8
MS.gene37404.t1 MTR_7g079010 57.692 78 33 0 84 161 121 198 1.21e-25 97.8
MS.gene37404.t1 MTR_7g071120 55.263 76 34 0 85 160 305 380 1.80e-25 101
MS.gene37404.t1 MTR_7g071120 55.172 58 25 1 104 161 166 222 1.39e-15 73.6
MS.gene37404.t1 MTR_5g074400 51.190 84 41 0 77 160 393 476 2.52e-25 101
MS.gene37404.t1 MTR_5g074400 53.448 58 26 1 104 161 243 299 6.50e-15 71.6
MS.gene37404.t1 MTR_7g080020 52.632 76 36 0 85 160 474 549 3.10e-25 101
MS.gene37404.t1 MTR_7g080020 44.048 84 39 3 81 164 264 339 2.44e-13 67.0
MS.gene37404.t1 MTR_7g080000 50.649 77 38 0 84 160 412 488 5.88e-25 100
MS.gene37404.t1 MTR_7g080000 46.250 80 35 3 81 160 218 289 1.58e-13 67.8
MS.gene37404.t1 MTR_4g132430 45.455 88 47 1 75 161 98 185 1.35e-24 97.8
MS.gene37404.t1 MTR_4g132430 45.455 88 47 1 75 161 232 319 5.91e-24 97.1
MS.gene37404.t1 MTR_4g082580 55.714 70 31 0 91 160 265 334 9.40e-24 95.9
MS.gene37404.t1 MTR_4g082580 49.123 57 29 0 104 160 145 201 1.78e-12 64.3
MS.gene37404.t1 MTR_5g097490 60.000 70 28 0 91 160 239 308 2.50e-23 94.7
MS.gene37404.t1 MTR_4g094412 52.000 75 35 1 88 161 227 301 9.54e-23 94.0
MS.gene37404.t1 MTR_4g094412 52.000 75 35 1 88 161 218 292 1.04e-22 93.6
MS.gene37404.t1 MTR_7g100510 53.623 69 32 0 92 160 349 417 1.91e-22 92.8
MS.gene37404.t1 MTR_7g100510 51.786 56 26 1 105 160 190 244 3.78e-12 63.5
MS.gene37404.t1 MTR_1g078260 54.167 72 32 1 90 160 233 304 6.18e-22 91.7
MS.gene37404.t1 MTR_7g110720 50.000 72 35 1 91 161 176 247 6.32e-22 90.9
MS.gene37404.t1 MTR_7g110720 50.000 72 35 1 91 161 203 274 7.12e-22 91.3
MS.gene37404.t1 MTR_3g053330 43.529 85 47 1 77 160 224 308 9.13e-22 90.9
MS.gene37404.t1 MTR_2g105060 52.703 74 32 2 91 161 79 152 1.97e-21 87.4
MS.gene37404.t1 MTR_2g105060 52.703 74 32 2 91 161 154 227 3.51e-21 88.2
MS.gene37404.t1 MTR_7g062220 60.000 60 24 0 104 163 124 183 4.94e-21 87.8
MS.gene37404.t1 MTR_1g077780 46.575 73 39 0 88 160 46 118 6.76e-21 83.6
MS.gene37404.t1 MTR_2g023930 42.000 100 57 1 63 161 264 363 1.05e-20 88.2
MS.gene37404.t1 MTR_7g009730 51.389 72 34 1 91 161 206 277 1.10e-20 88.2
MS.gene37404.t1 MTR_4g130900 54.286 70 32 0 91 160 346 415 3.28e-20 86.7
MS.gene37404.t1 MTR_5g016610 40.678 118 63 3 44 160 145 256 3.39e-20 84.7
MS.gene37404.t1 MTR_4g107970 43.750 80 44 1 82 160 156 235 9.11e-20 85.5
MS.gene37404.t1 MTR_4g107970 43.750 80 44 1 82 160 233 312 1.47e-19 85.1
MS.gene37404.t1 MTR_6g086555 49.296 71 35 1 91 160 193 263 4.37e-19 83.2
MS.gene37404.t1 MTR_4g049760 39.252 107 57 2 63 161 242 348 9.46e-19 82.4
MS.gene37404.t1 MTR_2g045360 40.659 91 53 1 71 160 178 268 2.40e-18 81.3
MS.gene37404.t1 MTR_2g088000 48.000 75 38 1 87 160 332 406 3.00e-18 81.3
MS.gene37404.t1 MTR_1g009613 48.718 78 36 2 84 160 245 319 3.77e-18 80.1
MS.gene37404.t1 MTR_4g007060 52.459 61 28 1 102 161 126 186 6.10e-18 79.0
MS.gene37404.t1 MTR_1g013760 44.737 76 39 2 88 160 122 197 6.86e-18 78.6
MS.gene37404.t1 MTR_4g007060 52.459 61 28 1 102 161 160 220 8.25e-18 79.0
MS.gene37404.t1 MTR_4g049790 48.611 72 36 1 91 161 299 370 1.08e-17 79.7
MS.gene37404.t1 MTR_8g028565 41.111 90 50 3 74 162 127 214 1.87e-17 78.2
MS.gene37404.t1 MTR_3g106060 50.847 59 28 1 103 160 137 195 1.89e-17 77.8
MS.gene37404.t1 MTR_4g094908 46.154 78 38 2 84 160 249 323 3.71e-17 77.4
MS.gene37404.t1 MTR_4g127040 47.436 78 37 2 84 160 228 302 1.85e-16 75.1
MS.gene37404.t1 MTR_1g070455 45.946 74 39 1 88 160 277 350 2.66e-16 75.1
MS.gene37404.t1 MTR_7g109600 56.897 58 24 1 105 161 54 111 3.69e-16 73.9
MS.gene37404.t1 MTR_5g097500 46.377 69 37 0 92 160 218 286 5.55e-16 73.9
MS.gene37404.t1 MTR_3g031220 47.222 72 33 2 94 161 184 254 6.58e-16 73.9
MS.gene37404.t1 MTR_3g031220 48.214 56 28 1 69 124 331 385 7.68e-11 59.7
MS.gene37404.t1 MTR_2g032030 38.614 101 57 3 66 161 225 325 1.52e-15 73.2
MS.gene37404.t1 MTR_2g032030 38.614 101 57 3 66 161 225 325 1.60e-15 73.2
MS.gene37404.t1 MTR_3g108960 37.624 101 58 2 61 160 275 371 4.80e-15 71.6
MS.gene37404.t1 MTR_1g013790 45.000 60 32 1 102 160 99 158 5.57e-15 70.5
MS.gene37404.t1 MTR_0117s0040 47.692 65 33 1 100 163 70 134 7.08e-15 70.1
MS.gene37404.t1 MTR_7g079040 41.758 91 51 2 74 162 123 213 8.41e-15 70.9
MS.gene37404.t1 MTR_8g098945 51.667 60 28 1 103 161 128 187 1.09e-14 69.7
MS.gene37404.t1 MTR_8g092010 37.903 124 63 6 9 130 23 134 4.15e-14 65.9
MS.gene37404.t1 MTR_8g087000 52.632 57 26 1 105 160 78 134 5.14e-14 67.8
MS.gene37404.t1 MTR_8g087000 52.632 57 26 1 105 160 77 133 5.35e-14 67.8
MS.gene37404.t1 MTR_2g083870 46.269 67 35 1 95 160 71 137 2.17e-13 66.2
MS.gene37404.t1 MTR_4g047580 40.278 72 42 1 91 161 268 339 3.49e-13 66.6
MS.gene37404.t1 MTR_3g090860 48.333 60 28 1 103 159 132 191 5.89e-13 65.5
MS.gene37404.t1 MTR_2g016770 49.123 57 28 1 105 160 36 92 8.63e-13 63.9
MS.gene37404.t1 MTR_2g016770 49.123 57 28 1 105 160 28 84 1.07e-12 63.5
MS.gene37404.t1 MTR_1g099600 36.957 92 51 2 70 160 157 242 2.37e-12 63.5
MS.gene37404.t1 MTR_5g074200 49.123 57 28 1 104 160 220 275 2.88e-12 63.5
MS.gene37404.t1 MTR_2g024380 39.080 87 49 3 82 164 228 314 3.07e-12 63.9
MS.gene37404.t1 MTR_5g044695 46.667 45 24 0 87 131 60 104 3.58e-12 60.1
MS.gene37404.t1 MTR_3g009470 50.000 58 28 1 104 161 280 336 3.67e-12 63.5
MS.gene37404.t1 MTR_3g009470 60.465 43 17 0 82 124 473 515 5.13e-12 63.2
MS.gene37404.t1 MTR_2g075700 31.532 111 69 3 56 163 100 206 1.17e-11 61.6
MS.gene37404.t1 MTR_2g024350 44.444 63 34 1 99 160 3 65 1.80e-11 60.5
MS.gene37404.t1 MTR_2g075680 43.939 66 34 1 97 159 141 206 2.58e-11 60.8
MS.gene37404.t1 MTR_7g073430 47.458 59 28 1 104 159 122 180 4.32e-11 60.1
MS.gene37404.t1 MTR_2g075750 36.842 76 44 2 87 159 12 86 8.33e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37404.t1 AT5G26170 51.034 145 58 2 33 164 29 173 1.82e-41 137
MS.gene37404.t1 AT5G64810 42.515 167 81 4 1 163 14 169 8.38e-39 130
MS.gene37404.t1 AT4G18170 62.353 85 32 0 77 161 145 229 4.68e-32 117
MS.gene37404.t1 AT2G47260 63.095 84 31 0 79 162 149 232 8.61e-32 116
MS.gene37404.t1 AT5G49520 68.919 74 23 0 88 161 205 278 1.18e-31 117
MS.gene37404.t1 AT1G29860 67.568 74 24 0 88 161 120 193 2.93e-31 114
MS.gene37404.t1 AT4G39410 62.195 82 30 1 84 164 203 284 5.50e-31 114
MS.gene37404.t1 AT1G69310 65.000 80 28 0 81 160 124 203 9.20e-31 112
MS.gene37404.t1 AT1G69310 65.000 80 28 0 81 160 124 203 9.20e-31 112
MS.gene37404.t1 AT1G69310 65.000 80 28 0 81 160 124 203 9.20e-31 112
MS.gene37404.t1 AT3G62340 64.286 84 28 1 78 161 94 175 8.65e-30 110
MS.gene37404.t1 AT2G44745 48.148 108 47 1 62 160 94 201 1.89e-28 105
MS.gene37404.t1 AT1G64000 52.941 85 39 1 79 162 88 172 1.92e-28 104
MS.gene37404.t1 AT5G46350 64.789 71 25 0 91 161 170 240 2.14e-28 107
MS.gene37404.t1 AT5G13080 60.563 71 28 0 91 161 54 124 3.85e-28 102
MS.gene37404.t1 AT4G26640 60.526 76 30 0 85 160 186 261 1.04e-27 106
MS.gene37404.t1 AT4G26640 50.000 60 29 1 102 161 33 91 3.77e-12 63.5
MS.gene37404.t1 AT4G26640 60.526 76 30 0 85 160 186 261 1.04e-27 106
MS.gene37404.t1 AT4G26640 50.000 60 29 1 102 161 33 91 3.77e-12 63.5
MS.gene37404.t1 AT4G26640 60.526 76 30 0 85 160 186 261 1.04e-27 106
MS.gene37404.t1 AT4G26640 50.000 60 29 1 102 161 33 91 3.77e-12 63.5
MS.gene37404.t1 AT4G26640 60.526 76 30 0 85 160 186 261 1.04e-27 106
MS.gene37404.t1 AT4G26640 50.000 60 29 1 102 161 33 91 3.77e-12 63.5
MS.gene37404.t1 AT4G26640 60.526 76 30 0 85 160 322 397 1.23e-27 107
MS.gene37404.t1 AT4G26640 50.000 60 29 1 102 161 169 227 2.64e-12 63.9
MS.gene37404.t1 AT4G26640 60.526 76 30 0 85 160 290 365 1.40e-27 107
MS.gene37404.t1 AT4G26640 50.000 60 29 1 102 161 137 195 3.00e-12 63.9
MS.gene37404.t1 AT4G26640 60.526 76 30 0 85 160 362 437 1.67e-27 107
MS.gene37404.t1 AT4G26640 50.000 60 29 1 102 161 209 267 2.88e-12 63.9
MS.gene37404.t1 AT3G01970 60.000 70 28 0 91 160 52 121 2.06e-27 100
MS.gene37404.t1 AT2G46130 51.163 86 42 0 77 162 3 88 7.88e-27 97.8
MS.gene37404.t1 AT5G07100 56.757 74 32 0 87 160 124 197 8.34e-27 100
MS.gene37404.t1 AT5G07100 46.552 58 31 0 104 161 24 81 1.16e-13 66.2
MS.gene37404.t1 AT5G07100 56.757 74 32 0 87 160 124 197 8.34e-27 100
MS.gene37404.t1 AT5G07100 46.552 58 31 0 104 161 24 81 1.16e-13 66.2
MS.gene37404.t1 AT5G07100 56.757 74 32 0 87 160 124 197 8.34e-27 100
MS.gene37404.t1 AT5G07100 46.552 58 31 0 104 161 24 81 1.16e-13 66.2
MS.gene37404.t1 AT5G07100 56.757 74 32 0 87 160 124 197 8.34e-27 100
MS.gene37404.t1 AT5G07100 46.552 58 31 0 104 161 24 81 1.16e-13 66.2
MS.gene37404.t1 AT5G56270 56.962 79 34 0 82 160 465 543 1.00e-26 105
MS.gene37404.t1 AT5G56270 50.877 57 27 1 104 160 273 328 2.16e-12 64.3
MS.gene37404.t1 AT5G41570 53.165 79 37 0 83 161 77 155 1.81e-26 99.0
MS.gene37404.t1 AT5G07100 56.757 74 32 0 87 160 217 290 1.89e-26 102
MS.gene37404.t1 AT5G07100 46.552 58 31 0 104 161 117 174 1.83e-13 67.0
MS.gene37404.t1 AT4G04450 45.455 99 51 2 64 161 160 256 5.32e-26 102
MS.gene37404.t1 AT4G26440 54.430 79 36 0 82 160 350 428 8.97e-26 102
MS.gene37404.t1 AT4G26440 48.276 58 27 2 104 160 178 233 1.09e-11 62.4
MS.gene37404.t1 AT1G69310 61.250 80 27 1 81 160 124 199 1.19e-25 99.4
MS.gene37404.t1 AT1G13960 52.632 76 36 0 85 160 390 465 1.72e-25 101
MS.gene37404.t1 AT1G13960 54.386 57 25 1 104 160 229 284 1.23e-13 67.8
MS.gene37404.t1 AT2G38470 55.263 76 34 0 85 160 343 418 1.79e-25 101
MS.gene37404.t1 AT2G38470 50.000 58 28 1 104 161 184 240 1.12e-13 68.2
MS.gene37404.t1 AT1G13960 52.632 76 36 0 85 160 237 312 1.86e-25 100
MS.gene37404.t1 AT1G13960 54.386 57 25 1 104 160 76 131 2.15e-13 67.0
MS.gene37404.t1 AT2G21900 43.966 116 54 2 58 162 52 167 4.65e-25 95.9
MS.gene37404.t1 AT3G01080 53.947 76 35 0 85 160 325 400 3.03e-24 97.8
MS.gene37404.t1 AT3G01080 53.947 76 35 0 85 160 287 362 3.82e-24 97.4
MS.gene37404.t1 AT2G03340 51.316 76 37 0 85 160 396 471 4.99e-24 97.4
MS.gene37404.t1 AT2G03340 39.785 93 55 1 68 160 214 305 4.55e-13 66.2
MS.gene37404.t1 AT2G30250 52.632 76 36 0 85 160 309 384 1.34e-23 95.5
MS.gene37404.t1 AT4G04450 45.455 99 51 2 64 161 254 350 2.05e-22 93.2
MS.gene37404.t1 AT1G62300 50.000 76 37 1 87 161 295 370 3.00e-22 92.8
MS.gene37404.t1 AT5G15130 46.250 80 42 1 82 160 163 242 4.37e-22 92.0
MS.gene37404.t1 AT5G15130 46.250 80 42 1 82 160 205 284 5.34e-22 92.0
MS.gene37404.t1 AT1G68150 50.667 75 36 1 88 161 219 293 6.81e-22 90.9
MS.gene37404.t1 AT2G04880 55.556 72 32 0 89 160 268 339 8.86e-22 90.9
MS.gene37404.t1 AT2G04880 32.800 125 74 3 44 161 46 167 3.88e-12 63.5
MS.gene37404.t1 AT2G46130 47.674 86 41 1 77 162 3 84 9.52e-22 84.7
MS.gene37404.t1 AT2G04880 55.556 72 32 0 89 160 292 363 1.07e-21 90.9
MS.gene37404.t1 AT2G04880 32.800 125 74 3 44 161 46 167 4.29e-12 63.5
MS.gene37404.t1 AT1G55600 45.349 86 46 1 78 162 280 365 4.89e-21 89.0
MS.gene37404.t1 AT4G30935 48.276 87 40 1 74 160 306 387 1.42e-20 87.8
MS.gene37404.t1 AT2G25000 50.794 63 30 1 103 164 102 164 3.82e-20 84.0
MS.gene37404.t1 AT2G25000 50.794 63 30 1 103 164 102 164 3.82e-20 84.0
MS.gene37404.t1 AT4G31800 42.697 89 50 1 73 160 80 168 4.89e-20 84.0
MS.gene37404.t1 AT4G01720 46.667 75 39 1 88 161 223 297 7.09e-20 85.9
MS.gene37404.t1 AT1G18860 44.737 76 41 1 87 161 222 297 8.51e-20 85.5
MS.gene37404.t1 AT2G25000 50.794 63 30 1 103 164 124 186 8.86e-20 83.2
MS.gene37404.t1 AT4G31800 42.697 89 50 1 73 160 145 233 1.01e-19 84.0
MS.gene37404.t1 AT2G25000 50.794 63 30 1 103 164 145 207 1.09e-19 83.6
MS.gene37404.t1 AT4G22070 44.706 85 46 1 78 161 271 355 1.13e-19 85.1
MS.gene37404.t1 AT4G22070 44.706 85 46 1 78 161 271 355 1.13e-19 85.1
MS.gene37404.t1 AT4G22070 44.706 85 46 1 78 161 271 355 1.13e-19 85.1
MS.gene37404.t1 AT4G22070 44.706 85 46 1 78 161 271 355 1.13e-19 85.1
MS.gene37404.t1 AT5G43290 53.226 62 29 0 102 163 112 173 3.45e-19 82.0
MS.gene37404.t1 AT2G37260 56.452 62 27 0 99 160 262 323 6.81e-19 82.4
MS.gene37404.t1 AT2G37260 46.667 75 35 2 90 160 65 138 4.11e-12 63.2
MS.gene37404.t1 AT2G37260 56.452 62 27 0 99 160 264 325 6.99e-19 82.0
MS.gene37404.t1 AT2G37260 46.667 75 35 2 90 160 67 140 4.14e-12 63.2
MS.gene37404.t1 AT2G37260 56.452 62 27 0 99 160 344 405 1.13e-18 82.0
MS.gene37404.t1 AT2G37260 46.667 75 35 2 90 160 147 220 4.45e-12 63.2
MS.gene37404.t1 AT2G30590 43.434 99 54 2 67 163 275 373 1.29e-18 81.6
MS.gene37404.t1 AT3G04670 45.361 97 51 2 66 160 223 319 5.34e-18 79.7
MS.gene37404.t1 AT1G80840 43.243 74 39 2 91 161 131 204 5.95e-18 79.3
MS.gene37404.t1 AT5G28650 45.361 97 51 2 66 160 223 319 8.67e-18 79.0
MS.gene37404.t1 AT2G23320 34.307 137 69 4 39 160 167 297 1.46e-17 78.2
MS.gene37404.t1 AT4G24240 46.067 89 46 2 74 160 250 338 1.65e-17 78.6
MS.gene37404.t1 AT4G31550 46.154 78 38 2 84 160 228 302 2.15e-17 77.8
MS.gene37404.t1 AT4G31550 46.154 78 38 2 84 160 229 303 2.19e-17 77.8
MS.gene37404.t1 AT1G30650 37.705 122 68 4 48 161 154 275 6.87e-17 77.0
MS.gene37404.t1 AT2G24570 46.154 78 38 2 84 160 226 300 4.75e-16 74.3
MS.gene37404.t1 AT1G29280 53.448 58 26 1 105 161 75 132 5.81e-16 73.2
MS.gene37404.t1 AT5G52830 58.621 58 23 1 105 161 166 223 6.76e-16 73.9
MS.gene37404.t1 AT2G34830 40.385 104 54 4 66 161 170 273 9.55e-16 73.9
MS.gene37404.t1 AT2G34830 40.385 104 54 4 66 161 179 282 1.07e-15 73.6
MS.gene37404.t1 AT4G01250 35.644 101 62 2 63 162 89 187 1.18e-15 72.8
MS.gene37404.t1 AT1G69810 43.210 81 44 2 83 161 124 204 2.51e-15 72.4
MS.gene37404.t1 AT1G69810 43.210 81 44 2 83 161 182 262 3.42e-15 72.0
MS.gene37404.t1 AT3G58710 50.000 68 33 1 95 161 62 129 4.46e-15 70.9
MS.gene37404.t1 AT3G58710 50.000 68 33 1 95 161 61 128 4.59e-15 70.9
MS.gene37404.t1 AT4G23550 47.619 63 32 1 99 160 135 197 7.85e-14 67.8
MS.gene37404.t1 AT5G45050 47.297 74 32 2 95 161 1165 1238 1.64e-13 67.8
MS.gene37404.t1 AT5G45050 47.297 74 32 2 95 161 1026 1099 1.72e-13 67.8
MS.gene37404.t1 AT5G45050 47.297 74 32 2 95 161 1137 1210 1.85e-13 67.4
MS.gene37404.t1 AT1G66600 48.438 64 30 1 103 163 102 165 3.30e-12 62.8
MS.gene37404.t1 AT1G66560 49.153 59 27 1 104 159 103 161 4.41e-12 62.4
MS.gene37404.t1 AT1G66550 35.000 100 61 2 67 163 72 170 7.18e-12 62.0
MS.gene37404.t1 AT2G46400 38.542 96 54 2 69 159 67 162 7.88e-12 62.4
MS.gene37404.t1 AT5G01900 33.684 95 60 1 67 158 73 167 8.15e-12 62.0
MS.gene37404.t1 AT3G56400 36.585 82 49 1 81 159 97 178 1.90e-11 61.2
MS.gene37404.t1 AT1G66550 36.905 84 50 1 83 163 82 165 2.54e-11 60.5

Find 42 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAATTAGTAGGTGATTT+TGG 0.165572 3.4:-91727752 MS.gene37404:CDS
TCAGGTGAATTTGGTGATAT+TGG 0.252768 3.4:+91727905 None:intergenic
CAAGTCAGAGGTTGAAATTC+TGG 0.266650 3.4:-91727252 MS.gene37404:CDS
TACTAGAAGACCCCTCAATT+TGG 0.293580 3.4:+91727717 None:intergenic
TGAAATTTGATGATGATATA+TGG 0.328388 3.4:-91727838 MS.gene37404:CDS
AAATCGCTGTCAGGTGAATT+TGG 0.343453 3.4:+91727896 None:intergenic
CTTGTTGAATGTCACGGTTC+AGG 0.355014 3.4:+91727777 None:intergenic
ATAGGAGGTGTCAGCAATAA+AGG 0.363243 3.4:-91727317 MS.gene37404:intron
TGTAGATGTTACCTTGGATT+GGG 0.377512 3.4:+91727179 None:intergenic
TTGTTTACAGGAACTACTAT+AGG 0.382242 3.4:-91727029 MS.gene37404:intron
CAGAATTTCAACCTCTGACT+TGG 0.388820 3.4:+91727253 None:intergenic
TTTCACCAACCAGTGGCCTT+TGG 0.391392 3.4:-91727876 MS.gene37404:CDS
GAGGTTGAAATTCTGGATGA+TGG 0.407475 3.4:-91727245 MS.gene37404:CDS
AAATTCTGGATGATGGGTTC+AGG 0.414441 3.4:-91727238 MS.gene37404:CDS
CAACAAGCTAATGAATTAGT+AGG 0.439335 3.4:-91727761 MS.gene37404:CDS
TAGGTTGTTATTACATAACT+TGG 0.446464 3.4:+91726952 None:intergenic
AACTTGATCTAGTGAAAACT+TGG 0.453876 3.4:+91726910 None:intergenic
ATGTAGATGTTACCTTGGAT+TGG 0.470249 3.4:+91727178 None:intergenic
AATGGCTCAGTATCATCATC+TGG 0.498163 3.4:+91727815 None:intergenic
TGGATGATGGGTTCAGGTGG+AGG 0.514242 3.4:-91727232 MS.gene37404:CDS
TACTATAGGTGTTCAGTGGA+TGG 0.515134 3.4:-91727015 MS.gene37404:CDS
CATTAGCTTGTTGAATGTCA+CGG 0.515880 3.4:+91727771 None:intergenic
GGGTTCAGGTGGAGGAAGTA+CGG 0.526912 3.4:-91727224 MS.gene37404:CDS
AGGTTGAAATTCTGGATGAT+GGG 0.535485 3.4:-91727244 MS.gene37404:CDS
AGGAAGTGGAAGCCAAATTG+AGG 0.537025 3.4:-91727729 MS.gene37404:CDS
GGAAGTGGAAGCCAAATTGA+GGG 0.538634 3.4:-91727728 MS.gene37404:CDS
CAGCAATAAAGGTGAGAAGA+AGG 0.542475 3.4:-91727306 MS.gene37404:CDS
TGGTTGGTGAAATCGCTGTC+AGG 0.551897 3.4:+91727887 None:intergenic
GAGGAAGTACGGAAAGAAGA+TGG 0.552357 3.4:-91727213 MS.gene37404:CDS
AAAGAGAGTTGAGAGAGATG+TGG 0.568317 3.4:-91726980 MS.gene37404:CDS
TTCTGGATGATGGGTTCAGG+TGG 0.569211 3.4:-91727235 MS.gene37404:CDS
AGGACATGTTCAGAAACAAA+TGG 0.569897 3.4:+91727797 None:intergenic
CAGAGAGTTCCAAAGGCCAC+TGG 0.574642 3.4:+91727867 None:intergenic
TGCATTCAAAACCAAGTCAG+AGG 0.595589 3.4:-91727264 MS.gene37404:CDS
AAGTACTCAGAGAGTTCCAA+AGG 0.612038 3.4:+91727860 None:intergenic
ATGAGTATGTGTGCCTTCGT+AGG 0.623197 3.4:+91726933 None:intergenic
GTAGATGTTACCTTGGATTG+GGG 0.647468 3.4:+91727180 None:intergenic
GAACTACTATAGGTGTTCAG+TGG 0.652914 3.4:-91727019 MS.gene37404:CDS
GAGTTCCAAAGGCCACTGGT+TGG 0.656594 3.4:+91727871 None:intergenic
TATGTAATAACAACCTACGA+AGG 0.679326 3.4:-91726946 MS.gene37404:CDS
GAAGTGGAAGCCAAATTGAG+GGG 0.700715 3.4:-91727727 MS.gene37404:CDS
ACAGCGATTTCACCAACCAG+TGG 0.708904 3.4:-91727883 MS.gene37404:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACATAATATATAAGAGA+TGG + chr3.4:91727765-91727784 None:intergenic 15.0%
!! AGAAAGAAATTAAATTTATG+AGG + chr3.4:91727434-91727453 None:intergenic 15.0%
!! AAAAATATCTTCTATGTCAT+TGG - chr3.4:91727484-91727503 MS.gene37404:intron 20.0%
!! AAATTAATTCATATACACGT+CGG - chr3.4:91727176-91727195 MS.gene37404:intron 20.0%
!!! CATAGAAGATATTTTTTTGA+AGG + chr3.4:91727480-91727499 None:intergenic 20.0%
!!! TACAATTTAATTTAGGAACT+TGG + chr3.4:91727152-91727171 None:intergenic 20.0%
!!! TGAAATTTGATGATGATATA+TGG - chr3.4:91727000-91727019 MS.gene37404:CDS 20.0%
!! AATGAATTAGTAGGTGATTT+TGG - chr3.4:91727086-91727105 MS.gene37404:intron 25.0%
!! GAATTTCCAAATTTGTTTAC+AGG - chr3.4:91727797-91727816 MS.gene37404:CDS 25.0%
!! TAGGTTGTTATTACATAACT+TGG + chr3.4:91727889-91727908 None:intergenic 25.0%
!!! TTGGTTTGTGTCATATTTAT+AGG - chr3.4:91727503-91727522 MS.gene37404:intron 25.0%
ACTGAGTTGCTTATAAAAAG+TGG + chr3.4:91727373-91727392 None:intergenic 30.0%
CAACAAGCTAATGAATTAGT+AGG - chr3.4:91727077-91727096 MS.gene37404:intron 30.0%
GTAGTTCCTGTAAACAAATT+TGG + chr3.4:91727806-91727825 None:intergenic 30.0%
GTTTGTGTCATATTTATAGG+AGG - chr3.4:91727506-91727525 MS.gene37404:intron 30.0%
TATGTAATAACAACCTACGA+AGG - chr3.4:91727892-91727911 MS.gene37404:CDS 30.0%
TTGTTTACAGGAACTACTAT+AGG - chr3.4:91727809-91727828 MS.gene37404:CDS 30.0%
! ACTTTTTATAAGCAACTCAG+TGG - chr3.4:91727372-91727391 MS.gene37404:intron 30.0%
!! ACACATATGATTTGTTGACA+AGG - chr3.4:91727278-91727297 MS.gene37404:CDS 30.0%
AGGACATGTTCAGAAACAAA+TGG + chr3.4:91727044-91727063 None:intergenic 35.0%
AGGTTGAAATTCTGGATGAT+GGG - chr3.4:91727594-91727613 MS.gene37404:intron 35.0%
ATGTAGATGTTACCTTGGAT+TGG + chr3.4:91727663-91727682 None:intergenic 35.0%
TGTAGATGTTACCTTGGATT+GGG + chr3.4:91727662-91727681 None:intergenic 35.0%
TTCACATGTAGATGTTACCT+TGG + chr3.4:91727668-91727687 None:intergenic 35.0%
! GAATTAGTAGGTGATTTTGG+AGG - chr3.4:91727089-91727108 MS.gene37404:intron 35.0%
! TCAGGTGAATTTGGTGATAT+TGG + chr3.4:91726936-91726955 None:intergenic 35.0%
!! CATTAGCTTGTTGAATGTCA+CGG + chr3.4:91727070-91727089 None:intergenic 35.0%
!! TCTCAACTCTCTTTTTCACT+TGG + chr3.4:91727852-91727871 None:intergenic 35.0%
AAAGAGAGTTGAGAGAGATG+TGG - chr3.4:91727858-91727877 MS.gene37404:CDS 40.0%
AAATCGCTGTCAGGTGAATT+TGG + chr3.4:91726945-91726964 None:intergenic 40.0%
AAGTACTCAGAGAGTTCCAA+AGG + chr3.4:91726981-91727000 None:intergenic 40.0%
AATGGCTCAGTATCATCATC+TGG + chr3.4:91727026-91727045 None:intergenic 40.0%
CAAGTCAGAGGTTGAAATTC+TGG - chr3.4:91727586-91727605 MS.gene37404:intron 40.0%
CAGAATTTCAACCTCTGACT+TGG + chr3.4:91727588-91727607 None:intergenic 40.0%
CAGCAATAAAGGTGAGAAGA+AGG - chr3.4:91727532-91727551 MS.gene37404:intron 40.0%
GAACTACTATAGGTGTTCAG+TGG - chr3.4:91727819-91727838 MS.gene37404:CDS 40.0%
GAGGTTGAAATTCTGGATGA+TGG - chr3.4:91727593-91727612 MS.gene37404:intron 40.0%
GTAGATGTTACCTTGGATTG+GGG + chr3.4:91727661-91727680 None:intergenic 40.0%
TACTAGAAGACCCCTCAATT+TGG + chr3.4:91727124-91727143 None:intergenic 40.0%
TACTATAGGTGTTCAGTGGA+TGG - chr3.4:91727823-91727842 MS.gene37404:CDS 40.0%
TGCATTCAAAACCAAGTCAG+AGG - chr3.4:91727574-91727593 MS.gene37404:intron 40.0%
!! AAATTCTGGATGATGGGTTC+AGG - chr3.4:91727600-91727619 MS.gene37404:intron 40.0%
!! ATAGGAGGTGTCAGCAATAA+AGG - chr3.4:91727521-91727540 MS.gene37404:intron 40.0%
AGGAAGTGGAAGCCAAATTG+AGG - chr3.4:91727109-91727128 MS.gene37404:intron 45.0%
ATGAGTATGTGTGCCTTCGT+AGG + chr3.4:91727908-91727927 None:intergenic 45.0%
CTTGTTGAATGTCACGGTTC+AGG + chr3.4:91727064-91727083 None:intergenic 45.0%
GAAGTGGAAGCCAAATTGAG+GGG - chr3.4:91727111-91727130 MS.gene37404:intron 45.0%
GGAAGTGGAAGCCAAATTGA+GGG - chr3.4:91727110-91727129 MS.gene37404:intron 45.0%
TGAAAAACAGCCCCAATCCA+AGG - chr3.4:91727648-91727667 MS.gene37404:intron 45.0%
! GAGGAAGTACGGAAAGAAGA+TGG - chr3.4:91727625-91727644 MS.gene37404:intron 45.0%
!! GTAGGTGATTTTGGAGGAAG+TGG - chr3.4:91727095-91727114 MS.gene37404:intron 45.0%
!!! TTTAAAATACAATTTAATTT+AGG + chr3.4:91727159-91727178 None:intergenic 5.0%
ACAGCGATTTCACCAACCAG+TGG - chr3.4:91726955-91726974 MS.gene37404:CDS 50.0%
TTTCACCAACCAGTGGCCTT+TGG - chr3.4:91726962-91726981 MS.gene37404:CDS 50.0%
!! TGGTTGGTGAAATCGCTGTC+AGG + chr3.4:91726954-91726973 None:intergenic 50.0%
!! TTCTGGATGATGGGTTCAGG+TGG - chr3.4:91727603-91727622 MS.gene37404:intron 50.0%
CAGAGAGTTCCAAAGGCCAC+TGG + chr3.4:91726974-91726993 None:intergenic 55.0%
GAGTTCCAAAGGCCACTGGT+TGG + chr3.4:91726970-91726989 None:intergenic 55.0%
GGGTTCAGGTGGAGGAAGTA+CGG - chr3.4:91727614-91727633 MS.gene37404:intron 55.0%
!! TGGATGATGGGTTCAGGTGG+AGG - chr3.4:91727606-91727625 MS.gene37404:intron 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 91726918 91727942 91726918 ID=MS.gene37404
chr3.4 mRNA 91726918 91727942 91726918 ID=MS.gene37404.t1;Parent=MS.gene37404
chr3.4 exon 91727717 91727942 91727717 ID=MS.gene37404.t1.exon1;Parent=MS.gene37404.t1
chr3.4 CDS 91727717 91727942 91727717 ID=cds.MS.gene37404.t1;Parent=MS.gene37404.t1
chr3.4 exon 91727191 91727335 91727191 ID=MS.gene37404.t1.exon2;Parent=MS.gene37404.t1
chr3.4 CDS 91727191 91727335 91727191 ID=cds.MS.gene37404.t1;Parent=MS.gene37404.t1
chr3.4 exon 91726918 91727041 91726918 ID=MS.gene37404.t1.exon3;Parent=MS.gene37404.t1
chr3.4 CDS 91726918 91727041 91726918 ID=cds.MS.gene37404.t1;Parent=MS.gene37404.t1
Gene Sequence

>MS.gene37404

ATGACAGATAAAAATCCAATATCACCAAATTCACCTGACAGCGATTTCACCAACCAGTGGCCTTTGGAACTCTCTGAGTACTTGAAATTTGATGATGATATATGGCCAGATGATGATACTGAGCCATTTGTTTCTGAACATGTCCTGAACCGTGACATTCAACAAGCTAATGAATTAGTAGGTGATTTTGGAGGAAGTGGAAGCCAAATTGAGGGGTCTTCTAGTAGTAAGCCAAGTTCCTAAATTAAATTGTATTTTAAATTAATTCATATACACGTCGGCGTAAATTTGTTTACAATGAAAATCAATGTAAAATCATGAAAAATGTTTGATTTTAATCATACTCATTTATAAAGTCGCACACATATGATTTGTTGACAAGGTAAAACTTTTTATGTAGTCGTGACTAGTGTATCAAAATAAAACTGAGAAATAAATTGAGATGTTTGTAGCCACTTTTTATAAGCAACTCAGTGGTTGAACAACTAATATAAGTAGCATGCTTAATTAACTCCTCATAAATTTAATTTCTTTCTATGTCTATATCTTCTATGTCATTCCTTCAAAAAAATATCTTCTATGTCATTGGTTTGTGTCATATTTATAGGAGGTGTCAGCAATAAAGGTGAGAAGAAGGAAATTAGAGATCATAAAGTTGCATTCAAAACCAAGTCAGAGGTTGAAATTCTGGATGATGGGTTCAGGTGGAGGAAGTACGGAAAGAAGATGGTGAAAAACAGCCCCAATCCAAGGTAACATCTACATGTGAATATGATATAGTTTAAGTCTAAGTATAAGTAAGATCTCTGTTTTAGAATTTATTTTAGATTGTTTCTAACATGAACCATCTCTTATATATTATGTATTTATGTTAGTTGAGAATTTCCAAATTTGTTTACAGGAACTACTATAGGTGTTCAGTGGATGGATGCCAAGTGAAAAAGAGAGTTGAGAGAGATGTGGACGATCCAAGTTATGTAATAACAACCTACGAAGGCACACATACTCATCCAAGTTTTCACTAG
Protein sequence

>MS.gene37404.t1

MTDKNPISPNSPDSDFTNQWPLELSEYLKFDDDIWPDDDTEPFVSEHVLNRDIQQANELVGDFGGSGSQIEGSSSRGVSNKGEKKEIRDHKVAFKTKSEVEILDDGFRWRKYGKKMVKNSPNPRNYYRCSVDGCQVKKRVERDVDDPSYVITTYEGTHTHPSFH