AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37438

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37438.t1 MTR_1g016630 65.359 153 53 0 1 153 108 260 8.83e-70 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37438.t1 AT3G20430 51.948 154 68 3 1 152 109 258 3.13e-51 164

Find 33 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAGAATCATCTTTCTT+TGG 0.263292 3.4:-91342380 None:intergenic
ATTATCTCTTTGTAGGCCTT+TGG 0.314430 3.4:-91341956 None:intergenic
TATTAATGCAGAAGCAATTC+AGG 0.317250 3.4:+91342330 MS.gene37438:intron
GTCTACCATCAGCAGTCTTT+TGG 0.323934 3.4:-91341883 None:intergenic
ATATTTAGTTGTTTAACATT+TGG 0.343026 3.4:-91342356 None:intergenic
AGATGATTCTTCTCAAGGTT+TGG 0.368080 3.4:+91342388 MS.gene37438:CDS
TATCTGTTCATGACAGGTTA+AGG 0.381152 3.4:+91342516 MS.gene37438:CDS
CTGCTGATGGTAGACGATTT+CGG 0.382090 3.4:+91341891 MS.gene37438:CDS
GGTTTGGCCTTATCATTTGC+TGG 0.387229 3.4:+91342404 MS.gene37438:CDS
GAAAAGAGCAAAAGAGTTTG+AGG 0.403168 3.4:+91341979 MS.gene37438:CDS
GTGGAACATCATAAAGGTTC+AGG 0.418166 3.4:+91341931 MS.gene37438:CDS
TACACTGCTGCGGGTTGTCT+TGG 0.419749 3.4:+91339836 MS.gene37438:CDS
TCATTTGCTGGCAGTGATCA+AGG 0.433421 3.4:+91342416 MS.gene37438:CDS
ATGGTAGACGATTTCGGAGT+GGG 0.444653 3.4:+91341897 MS.gene37438:CDS
AGATCATCATCATAGGAAAC+AGG 0.457123 3.4:-91342542 None:intergenic
AAGAAAGATGATTCTTCTCA+AGG 0.457634 3.4:+91342383 MS.gene37438:CDS
TTGCATTTCTGATGCAAGAA+AGG 0.457701 3.4:-91342456 None:intergenic
TCCTATGATGATGATCTACT+TGG 0.470099 3.4:+91342548 MS.gene37438:CDS
TCCAAGTAGATCATCATCAT+AGG 0.495710 3.4:-91342549 None:intergenic
CATACTGTGGAACATCATAA+AGG 0.500400 3.4:+91341925 MS.gene37438:CDS
AATGCAAAATCAACACGAAC+CGG 0.510093 3.4:+91342472 MS.gene37438:CDS
ATCACTGCCAGCAAATGATA+AGG 0.511776 3.4:-91342411 None:intergenic
AGTCATGTTGCATCATTGAC+TGG 0.517971 3.4:-91342578 None:intergenic
GTTGATGCAATACAGGCTTG+TGG 0.597539 3.4:+91341857 MS.gene37438:CDS
ATTAAGTGATATCATCAAAG+AGG 0.607067 3.4:+91339868 MS.gene37438:CDS
TGGTAGACGATTTCGGAGTG+GGG 0.613310 3.4:+91341898 MS.gene37438:CDS
CATAAAGGTTCAGGAACCAA+AGG 0.616588 3.4:+91341940 MS.gene37438:CDS
GGTAGACGATTTCGGAGTGG+GGG 0.617630 3.4:+91341899 MS.gene37438:CDS
TATATGGTATACACTGCTGC+GGG 0.621075 3.4:+91339827 None:intergenic
ATATATGGTATACACTGCTG+CGG 0.631527 3.4:+91339826 None:intergenic
GGAGGCCAAAAGACTGCTGA+TGG 0.663490 3.4:+91341878 MS.gene37438:CDS
GATGGTAGACGATTTCGGAG+TGG 0.663553 3.4:+91341896 MS.gene37438:CDS
GATGCAATACAGGCTTGTGG+AGG 0.676395 3.4:+91341860 MS.gene37438:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAATAAAAATAAAAAC+AGG - chr3.4:91341772-91341791 None:intergenic 10.0%
!!! TGAATAATCTTTATATTTTT+GGG + chr3.4:91342006-91342025 MS.gene37438:intron 10.0%
!! ATATTTAGTTGTTTAACATT+TGG - chr3.4:91342359-91342378 None:intergenic 15.0%
!! GATTAAATTAAGTAAAACAA+AGG - chr3.4:91340467-91340486 None:intergenic 15.0%
!! TCAAATGACTTAAATAATAT+TGG + chr3.4:91340033-91340052 MS.gene37438:intron 15.0%
!! TTTCTGAATATTTCTTAATT+TGG + chr3.4:91340526-91340545 MS.gene37438:intron 15.0%
!!! GTGAATAATCTTTATATTTT+TGG + chr3.4:91342005-91342024 MS.gene37438:intron 15.0%
!! AAAAATAAGTAAAGTCACTA+CGG - chr3.4:91341561-91341580 None:intergenic 20.0%
!! AATTTACAATGTATCAACTT+AGG - chr3.4:91341819-91341838 None:intergenic 20.0%
!! ATGATTTGAACAAATGTATA+TGG - chr3.4:91340382-91340401 None:intergenic 20.0%
!! GCAAATAAATAAAGAAACTT+TGG + chr3.4:91341272-91341291 MS.gene37438:intron 20.0%
!! TATCCAAATAAATCAAGTAA+AGG + chr3.4:91342176-91342195 MS.gene37438:intron 20.0%
!! TTTGTAGTAACTATTAAGTA+GGG + chr3.4:91342136-91342155 MS.gene37438:intron 20.0%
!!! AAATTTTCTTTAGAAGTAAC+CGG - chr3.4:91342494-91342513 None:intergenic 20.0%
!!! ATAATCTTTATATTTTTGGG+TGG + chr3.4:91342009-91342028 MS.gene37438:intron 20.0%
!!! ATATAGTGTTTATTTTGGTT+GGG + chr3.4:91341417-91341436 MS.gene37438:intron 20.0%
!!! TAATCTTTATATTTTTGGGT+GGG + chr3.4:91342010-91342029 MS.gene37438:intron 20.0%
!!! TCTACTTAAAGATGTTATTT+CGG + chr3.4:91340082-91340101 MS.gene37438:intron 20.0%
!!! TCTTTTATGTAAAGCAAATA+TGG + chr3.4:91341124-91341143 MS.gene37438:intron 20.0%
!!! TTTGCATATAGTGTTTATTT+TGG + chr3.4:91341412-91341431 MS.gene37438:intron 20.0%
! AAAATGCCTAGCATATTTAA+AGG - chr3.4:91341313-91341332 None:intergenic 25.0%
! AAAGTTTCCATGTATTTAGA+AGG - chr3.4:91340293-91340312 None:intergenic 25.0%
! AACCCAATTAAACTAAATAC+TGG - chr3.4:91341343-91341362 None:intergenic 25.0%
! AAGCCTTTACTTGATTTATT+TGG - chr3.4:91342182-91342201 None:intergenic 25.0%
! AAGTTTCCATGTATTTAGAA+GGG - chr3.4:91340292-91340311 None:intergenic 25.0%
! AATGTAAGAAACAGAGAAAA+TGG - chr3.4:91340247-91340266 None:intergenic 25.0%
! AATTAAAATCTGCAAGGTTA+GGG - chr3.4:91340813-91340832 None:intergenic 25.0%
! ACGTGTACATAAAATATAGA+TGG - chr3.4:91341715-91341734 None:intergenic 25.0%
! AGTTGAGGTTATATACTATT+TGG + chr3.4:91340705-91340724 MS.gene37438:intron 25.0%
! ATAGTTACTACAAACATACA+TGG - chr3.4:91342130-91342149 None:intergenic 25.0%
! ATGTAAGAAACAGAGAAAAT+GGG - chr3.4:91340246-91340265 None:intergenic 25.0%
! ATTAAGTAAAACAAAGGTTG+TGG - chr3.4:91340461-91340480 None:intergenic 25.0%
! ATTAAGTGATATCATCAAAG+AGG + chr3.4:91339868-91339887 MS.gene37438:CDS 25.0%
! GTTTGTAGTAACTATTAAGT+AGG + chr3.4:91342135-91342154 MS.gene37438:intron 25.0%
! TAGTTTAGATTCAGAAATCT+TGG - chr3.4:91341497-91341516 None:intergenic 25.0%
! TCATTATTTACAAACTGTGA+AGG + chr3.4:91340896-91340915 MS.gene37438:intron 25.0%
! TGTACATAAAATATAGATGG+TGG - chr3.4:91341712-91341731 None:intergenic 25.0%
! TTATTTCCCATCTCTTTAAT+AGG + chr3.4:91340637-91340656 MS.gene37438:intron 25.0%
! TTGTAGTAACTATTAAGTAG+GGG + chr3.4:91342137-91342156 MS.gene37438:intron 25.0%
!! ATAATATTGGTGATACTGTT+TGG + chr3.4:91340046-91340065 MS.gene37438:intron 25.0%
!! ATATGCTAGGCATTTTTAAA+AGG + chr3.4:91341317-91341336 MS.gene37438:intron 25.0%
!! ATTTTATATCTGTTCATGAC+AGG + chr3.4:91342510-91342529 MS.gene37438:CDS 25.0%
!! GATTTTCCTTTAAATATGCT+AGG + chr3.4:91341304-91341323 MS.gene37438:intron 25.0%
!! TCTTTTCATTATCTCTTTGT+AGG - chr3.4:91341966-91341985 None:intergenic 25.0%
!!! AATCTTTATATTTTTGGGTG+GGG + chr3.4:91342011-91342030 MS.gene37438:intron 25.0%
!!! AGTAGAGCTCATATTTTTAT+TGG - chr3.4:91341595-91341614 None:intergenic 25.0%
!!! CATATAGTGTTTATTTTGGT+TGG + chr3.4:91341416-91341435 MS.gene37438:intron 25.0%
!!! GTAGTGACTTTACTTATTTT+TGG + chr3.4:91341560-91341579 MS.gene37438:intron 25.0%
AAAGGAAAATGGAAGATTCT+AGG - chr3.4:91341471-91341490 None:intergenic 30.0%
AAGAAAGATGATTCTTCTCA+AGG + chr3.4:91342383-91342402 MS.gene37438:CDS 30.0%
ACTAAATTTGAGTGCATCAT+AGG - chr3.4:91339903-91339922 None:intergenic 30.0%
AGAAATTAAAAATGGCTGCA+TGG - chr3.4:91340773-91340792 None:intergenic 30.0%
AGGCTTAGAAAATCGATTAT+GGG - chr3.4:91340995-91341014 None:intergenic 30.0%
ATACATTGTAAATTTGCACG+CGG + chr3.4:91341825-91341844 MS.gene37438:intron 30.0%
ATCTTTAAGTAGACAGATAC+TGG - chr3.4:91340075-91340094 None:intergenic 30.0%
CTAAATTTGAGTGCATCATA+GGG - chr3.4:91339902-91339921 None:intergenic 30.0%
GAATTAAAATCTGCAAGGTT+AGG - chr3.4:91340814-91340833 None:intergenic 30.0%
GAGGTTATATACTATTTGGA+CGG + chr3.4:91340709-91340728 MS.gene37438:intron 30.0%
GTAAGAAATTAAGTGATGAG+AGG - chr3.4:91340200-91340219 None:intergenic 30.0%
TATTAATGCAGAAGCAATTC+AGG + chr3.4:91342330-91342349 MS.gene37438:intron 30.0%
TCTTTAAGTAGACAGATACT+GGG - chr3.4:91340074-91340093 None:intergenic 30.0%
TGAGAAGAATCATCTTTCTT+TGG - chr3.4:91342383-91342402 None:intergenic 30.0%
TGGATGAAAGAAAAACAAGA+CGG - chr3.4:91340128-91340147 None:intergenic 30.0%
! AGGCCAGTATTTAGTTTAAT+TGG + chr3.4:91341337-91341356 MS.gene37438:intron 30.0%
! GGCCAGTATTTAGTTTAATT+GGG + chr3.4:91341338-91341357 MS.gene37438:intron 30.0%
! TTCAAATCATCTTCGTTTTC+TGG + chr3.4:91340392-91340411 MS.gene37438:intron 30.0%
!! AATTGAGGGTATCATATCAT+TGG + chr3.4:91341533-91341552 MS.gene37438:intron 30.0%
AAGAAACAGAGAAAATGGGT+GGG - chr3.4:91340242-91340261 None:intergenic 35.0%
AATCTTGGCACAAAGGAAAA+TGG - chr3.4:91341482-91341501 None:intergenic 35.0%
AATGCAAAATCAACACGAAC+CGG + chr3.4:91342472-91342491 MS.gene37438:CDS 35.0%
ACTCTCACCTTTCCTTTAAA+AGG - chr3.4:91340688-91340707 None:intergenic 35.0%
AGATCATCATCATAGGAAAC+AGG - chr3.4:91342545-91342564 None:intergenic 35.0%
AGATGATTCTTCTCAAGGTT+TGG + chr3.4:91342388-91342407 MS.gene37438:CDS 35.0%
ATAGGACTGTGACTATGATT+TGG + chr3.4:91340655-91340674 MS.gene37438:intron 35.0%
ATCCTTCCCTTCTAAATACA+TGG + chr3.4:91340283-91340302 MS.gene37438:intron 35.0%
ATTATCTCTTTGTAGGCCTT+TGG - chr3.4:91341959-91341978 None:intergenic 35.0%
ATTCAGAAATCTTGGCACAA+AGG - chr3.4:91341489-91341508 None:intergenic 35.0%
CACAGTCCTATTAAAGAGAT+GGG - chr3.4:91340646-91340665 None:intergenic 35.0%
CACGCGTCAGAAATTAAAAA+TGG - chr3.4:91340781-91340800 None:intergenic 35.0%
CAGGCTTAGAAAATCGATTA+TGG - chr3.4:91340996-91341015 None:intergenic 35.0%
CATACTGTGGAACATCATAA+AGG + chr3.4:91341925-91341944 MS.gene37438:CDS 35.0%
GAAAAGAGCAAAAGAGTTTG+AGG + chr3.4:91341979-91341998 MS.gene37438:CDS 35.0%
GAAAGTTGTCATAAGACCAT+TGG - chr3.4:91340510-91340529 None:intergenic 35.0%
GAAGTCACTATGTATGAACA+TGG - chr3.4:91340957-91340976 None:intergenic 35.0%
GATAAGCATAACCAGATCAA+AGG - chr3.4:91340736-91340755 None:intergenic 35.0%
GCTTAGAAAATCGATTATGG+GGG - chr3.4:91340993-91341012 None:intergenic 35.0%
GGCTTAGAAAATCGATTATG+GGG - chr3.4:91340994-91341013 None:intergenic 35.0%
TAAGAAACAGAGAAAATGGG+TGG - chr3.4:91340243-91340262 None:intergenic 35.0%
TATCTGTTCATGACAGGTTA+AGG + chr3.4:91342516-91342535 MS.gene37438:CDS 35.0%
TCACAGTCCTATTAAAGAGA+TGG - chr3.4:91340647-91340666 None:intergenic 35.0%
TCCAAGTAGATCATCATCAT+AGG - chr3.4:91342552-91342571 None:intergenic 35.0%
TGAAAGAAAAACAAGACGGT+TGG - chr3.4:91340124-91340143 None:intergenic 35.0%
TGTGAAATACCATTGTCACT+TGG + chr3.4:91339968-91339987 MS.gene37438:intron 35.0%
TTACCGTCAAACCTAAATGT+GGG + chr3.4:91341362-91341381 MS.gene37438:intron 35.0%
TTACTACAAACATACATGGC+TGG - chr3.4:91342126-91342145 None:intergenic 35.0%
TTCCATGTATTTAGAAGGGA+AGG - chr3.4:91340288-91340307 None:intergenic 35.0%
TTGACGGTATAACTGAGATA+TGG + chr3.4:91340347-91340366 MS.gene37438:intron 35.0%
TTGCATTTCTGATGCAAGAA+AGG - chr3.4:91342459-91342478 None:intergenic 35.0%
TTTACCGTCAAACCTAAATG+TGG + chr3.4:91341361-91341380 MS.gene37438:intron 35.0%
TTTCATCCAAAGCTGTTTGA+AGG + chr3.4:91340139-91340158 MS.gene37438:intron 35.0%
! AATTTCAGCTCTGACATTGT+TGG - chr3.4:91341099-91341118 None:intergenic 35.0%
! CAAATTTTGTCCAGTTCCAA+TGG + chr3.4:91340491-91340510 MS.gene37438:intron 35.0%
! CATTTGAAGCAGTATTGCTT+AGG - chr3.4:91340020-91340039 None:intergenic 35.0%
! GTCTGGAATTAAAATCTGCA+AGG - chr3.4:91340819-91340838 None:intergenic 35.0%
! TATCCCACATTTAGGTTTGA+CGG - chr3.4:91341368-91341387 None:intergenic 35.0%
! TCCTATGATGATGATCTACT+TGG + chr3.4:91342548-91342567 MS.gene37438:CDS 35.0%
!! TAAAGATGTTATTTCGGTGC+AGG + chr3.4:91340088-91340107 MS.gene37438:intron 35.0%
!! TGGTTGGTGACAACTAAATT+CGG + chr3.4:91342069-91342088 MS.gene37438:intron 35.0%
!!! GTTTTAGGTTGATGCAATAC+AGG + chr3.4:91341850-91341869 MS.gene37438:intron 35.0%
AGCAGATGACCAAAATTGAG+TGG - chr3.4:91341447-91341466 None:intergenic 40.0%
AGTGAGACTATCCCACATTT+AGG - chr3.4:91341376-91341395 None:intergenic 40.0%
ATCACTGCCAGCAAATGATA+AGG - chr3.4:91342414-91342433 None:intergenic 40.0%
CATAAAGGTTCAGGAACCAA+AGG + chr3.4:91341940-91341959 MS.gene37438:CDS 40.0%
CATCTTGTCTCGTTGATACT+TGG + chr3.4:91342049-91342068 MS.gene37438:intron 40.0%
CGAAATCCTTCAAACAGCTT+TGG - chr3.4:91340148-91340167 None:intergenic 40.0%
GGGAAACAGACAAAAAGCAA+GGG - chr3.4:91340222-91340241 None:intergenic 40.0%
GTGGAACATCATAAAGGTTC+AGG + chr3.4:91341931-91341950 MS.gene37438:CDS 40.0%
TAAACTAGCATTGTCGCAGT+GGG + chr3.4:91341510-91341529 MS.gene37438:intron 40.0%
TAAAGGAAAGGTGAGAGTTG+AGG + chr3.4:91340690-91340709 MS.gene37438:intron 40.0%
TATGTGCCATATGCTTTGCA+TGG + chr3.4:91341668-91341687 MS.gene37438:intron 40.0%
TGGGAAACAGACAAAAAGCA+AGG - chr3.4:91340223-91340242 None:intergenic 40.0%
TGTCATAAGACCATTGGAAC+TGG - chr3.4:91340504-91340523 None:intergenic 40.0%
TTCCAACTTCCAAGTGACAA+TGG - chr3.4:91339980-91339999 None:intergenic 40.0%
TTGAAGCAGTATTGCTTAGG+CGG - chr3.4:91340017-91340036 None:intergenic 40.0%
TTGCCAAGATTGATCGTCAA+TGG + chr3.4:91340314-91340333 MS.gene37438:intron 40.0%
TTGTCTCGTTGATACTTGGT+TGG + chr3.4:91342053-91342072 MS.gene37438:intron 40.0%
! CAATGGTGGTGTTAGTTTGA+CGG + chr3.4:91340331-91340350 MS.gene37438:intron 40.0%
! CACCTTTCCTTTAAAAGGCA+TGG - chr3.4:91340683-91340702 None:intergenic 40.0%
! TACCATTGTCACTTGGAAGT+TGG + chr3.4:91339975-91339994 MS.gene37438:intron 40.0%
! TTGGGAAAGCCACTCAATTT+TGG + chr3.4:91341435-91341454 MS.gene37438:intron 40.0%
!! AGCCATGCCTTTTAAAGGAA+AGG + chr3.4:91340678-91340697 MS.gene37438:intron 40.0%
!! GGTTGGTGACAACTAAATTC+GGG + chr3.4:91342070-91342089 MS.gene37438:intron 40.0%
!! TGCTTGATCTTTGGTGTTCT+TGG + chr3.4:91340863-91340882 MS.gene37438:intron 40.0%
!! TTTGGAGCCATGCCTTTTAA+AGG + chr3.4:91340673-91340692 MS.gene37438:intron 40.0%
!!! CTTTATATTTTTGGGTGGGG+AGG + chr3.4:91342014-91342033 MS.gene37438:intron 40.0%
AAAACAACGAACACTCCAGC+AGG - chr3.4:91340588-91340607 None:intergenic 45.0%
ACGGTTCCATGCAAAGCATA+TGG - chr3.4:91341677-91341696 None:intergenic 45.0%
ACTTGAAACACGTCACGTGA+TGG + chr3.4:91340432-91340451 MS.gene37438:intron 45.0%
AGATCAAGCAGAGGATTGGA+AGG - chr3.4:91340853-91340872 None:intergenic 45.0%
ATCACGTGACGTGTTTCAAG+TGG - chr3.4:91340433-91340452 None:intergenic 45.0%
ATGGTAGACGATTTCGGAGT+GGG + chr3.4:91341897-91341916 MS.gene37438:CDS 45.0%
ATTGTCGCAGTGGGAATTGA+GGG + chr3.4:91341519-91341538 MS.gene37438:intron 45.0%
ATTTGGACGGACCTTTGATC+TGG + chr3.4:91340722-91340741 MS.gene37438:intron 45.0%
CATTGTAAATTTGCACGCGG+AGG + chr3.4:91341828-91341847 MS.gene37438:intron 45.0%
CCAAAGATCAAGCAGAGGAT+TGG - chr3.4:91340857-91340876 None:intergenic 45.0%
CCAAGATTGATCGTCAATGG+TGG + chr3.4:91340317-91340336 MS.gene37438:intron 45.0%
CCAATCCTCTGCTTGATCTT+TGG + chr3.4:91340854-91340873 MS.gene37438:intron 45.0%
CCACCATTGACGATCAATCT+TGG - chr3.4:91340320-91340339 None:intergenic 45.0%
CTAAACTAGCATTGTCGCAG+TGG + chr3.4:91341509-91341528 MS.gene37438:intron 45.0%
CTGCATGGTACTAGAAAGAG+TGG - chr3.4:91340758-91340777 None:intergenic 45.0%
CTGCTGATGGTAGACGATTT+CGG + chr3.4:91341891-91341910 MS.gene37438:CDS 45.0%
GAACACCAAAGATCAAGCAG+AGG - chr3.4:91340862-91340881 None:intergenic 45.0%
GGAAGGAGCAAACTATTGTC+TGG - chr3.4:91340836-91340855 None:intergenic 45.0%
GGCAAAACTGGCTACACTAA+TGG - chr3.4:91341060-91341079 None:intergenic 45.0%
GTTGATGCAATACAGGCTTG+TGG + chr3.4:91341857-91341876 MS.gene37438:CDS 45.0%
GTTGGTTGCTACACTGAAGT+GGG - chr3.4:91341081-91341100 None:intergenic 45.0%
TACACTGAAGTGGGCAAAAC+TGG - chr3.4:91341072-91341091 None:intergenic 45.0%
TGAAGCAGTATTGCTTAGGC+GGG - chr3.4:91340016-91340035 None:intergenic 45.0%
! AATTTGCACGCGGAGGTTTT+AGG + chr3.4:91341835-91341854 MS.gene37438:intron 45.0%
! GTCTACCATCAGCAGTCTTT+TGG - chr3.4:91341886-91341905 None:intergenic 45.0%
! TCATTTGCTGGCAGTGATCA+AGG + chr3.4:91342416-91342435 MS.gene37438:CDS 45.0%
! TGTTGGTTGCTACACTGAAG+TGG - chr3.4:91341082-91341101 None:intergenic 45.0%
! TTTTCTAAGCCTGTGTGCGT+TGG + chr3.4:91341003-91341022 MS.gene37438:intron 45.0%
!! ATGGTGGACACTATGCATCA+CGG - chr3.4:91341696-91341715 None:intergenic 45.0%
!! GGTTTGGCCTTATCATTTGC+TGG + chr3.4:91342404-91342423 MS.gene37438:CDS 45.0%
!! TAATTAAAAAAAAAAAAGAA+CGG - chr3.4:91341235-91341254 None:intergenic 5.0%
AATGAGTGGCCATTGAGCCA+GGG - chr3.4:91340559-91340578 None:intergenic 50.0%
CATTGTCGCAGTGGGAATTG+AGG + chr3.4:91341518-91341537 MS.gene37438:intron 50.0%
CCACTCATTGAATCTCCTGC+TGG + chr3.4:91340570-91340589 MS.gene37438:intron 50.0%
CCAGCAGGAGATTCAATGAG+TGG - chr3.4:91340573-91340592 None:intergenic 50.0%
GATGCAATACAGGCTTGTGG+AGG + chr3.4:91341860-91341879 MS.gene37438:CDS 50.0%
GATGGTAGACGATTTCGGAG+TGG + chr3.4:91341896-91341915 MS.gene37438:CDS 50.0%
TCAGTAGTTTCCCCTTCACC+AGG - chr3.4:91341029-91341048 None:intergenic 50.0%
TGGTAGACGATTTCGGAGTG+GGG + chr3.4:91341898-91341917 MS.gene37438:CDS 50.0%
! CTTAATTTGGCTTCCCTCCC+TGG + chr3.4:91340539-91340558 MS.gene37438:intron 50.0%
!! TTTTGGGTGGGGAGGAACTT+AGG + chr3.4:91342022-91342041 MS.gene37438:intron 50.0%
CAATGAGTGGCCATTGAGCC+AGG - chr3.4:91340560-91340579 None:intergenic 55.0%
GGAGGCCAAAAGACTGCTGA+TGG + chr3.4:91341878-91341897 MS.gene37438:CDS 55.0%
GGTAGACGATTTCGGAGTGG+GGG + chr3.4:91341899-91341918 MS.gene37438:CDS 55.0%
! TACACTGCTGCGGGTTGTCT+TGG + chr3.4:91339836-91339855 MS.gene37438:CDS 55.0%
AGACGATTTCGGAGTGGGGG+TGG + chr3.4:91341902-91341921 MS.gene37438:CDS 60.0%
AGTGGCCATTGAGCCAGGGA+GGG - chr3.4:91340555-91340574 None:intergenic 60.0%
TTCACCAGGCCAACGCACAC+AGG - chr3.4:91341015-91341034 None:intergenic 60.0%
! GTGTGCGTTGGCCTGGTGAA+GGG + chr3.4:91341015-91341034 MS.gene37438:intron 60.0%
! TAAGCCTGTGTGCGTTGGCC+TGG + chr3.4:91341008-91341027 MS.gene37438:intron 60.0%
! TGTGCGTTGGCCTGGTGAAG+GGG + chr3.4:91341016-91341035 MS.gene37438:intron 60.0%
! TGTGTGCGTTGGCCTGGTGA+AGG + chr3.4:91341014-91341033 MS.gene37438:intron 60.0%
GAGTGGCCATTGAGCCAGGG+AGG - chr3.4:91340556-91340575 None:intergenic 65.0%
GGAGTGGGGGTGGCATACTG+TGG + chr3.4:91341912-91341931 MS.gene37438:CDS 65.0%
GGCTTCCCTCCCTGGCTCAA+TGG + chr3.4:91340547-91340566 MS.gene37438:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 91339830 91342598 91339830 ID=MS.gene37438
chr3.4 mRNA 91339830 91342598 91339830 ID=MS.gene37438.t1;Parent=MS.gene37438
chr3.4 exon 91339830 91339889 91339830 ID=MS.gene37438.t1.exon1;Parent=MS.gene37438.t1
chr3.4 CDS 91339830 91339889 91339830 ID=cds.MS.gene37438.t1;Parent=MS.gene37438.t1
chr3.4 exon 91341857 91342000 91341857 ID=MS.gene37438.t1.exon2;Parent=MS.gene37438.t1
chr3.4 CDS 91341857 91342000 91341857 ID=cds.MS.gene37438.t1;Parent=MS.gene37438.t1
chr3.4 exon 91342341 91342598 91342341 ID=MS.gene37438.t1.exon3;Parent=MS.gene37438.t1
chr3.4 CDS 91342341 91342598 91342341 ID=cds.MS.gene37438.t1;Parent=MS.gene37438.t1
Gene Sequence

>MS.gene37438

ATGGTATACACTGCTGCGGGTTGTCTTGGAATGTTTGCATTAAGTGATATCATCAAAGAGGTATTGAAACCCTATGATGCACTCAAATTTAGTTTATTAAGCAAGTTTACTTTGTTCTTTAGTTTATCTATGATTTTTTGTGAAATACCATTGTCACTTGGAAGTTGGAAAACAATTCTAAGACCCGCCTAAGCAATACTGCTTCAAATGACTTAAATAATATTGGTGATACTGTTTGGTACCCAGTATCTGTCTACTTAAAGATGTTATTTCGGTGCAGGATGTACTGATCCAACCGTCTTGTTTTTCTTTCATCCAAAGCTGTTTGAAGGATTTCGTATTTGTACTCATGTGCTGCAGTTTGCAGCCTCTCATCACTTAATTTCTTACCCTTGCTTTTTGTCTGTTTCCCACCCATTTTCTCTGTTTCTTACATTGAAGTCGTAATTCTAAATCCTTCCCTTCTAAATACATGGAAACTTTGTTGCCAAGATTGATCGTCAATGGTGGTGTTAGTTTGACGGTATAACTGAGATATGGTTCTCTGCTCCATATACATTTGTTCAAATCATCTTCGTTTTCTGGTGTGCATTGTGTTAGCCACTTGAAACACGTCACGTGATGGTTTCCACAACCTTTGTTTTACTTAATTTAATCTTAACAAATTTTGTCCAGTTCCAATGGTCTTATGACAACTTTCTGAATATTTCTTAATTTGGCTTCCCTCCCTGGCTCAATGGCCACTCATTGAATCTCCTGCTGGAGTGTTCGTTGTTTTTCTTTGAAATAAATTGTTCTTTTTTTGATTTATTTCCCATCTCTTTAATAGGACTGTGACTATGATTTGGAGCCATGCCTTTTAAAGGAAAGGTGAGAGTTGAGGTTATATACTATTTGGACGGACCTTTGATCTGGTTATGCTTATCCACTCTTTCTAGTACCATGCAGCCATTTTTAATTTCTGACGCGTGCAATTTTGTCCCTAACCTTGCAGATTTTAATTCCAGACAATAGTTTGCTCCTTCCAATCCTCTGCTTGATCTTTGGTGTTCTTGGCTGAATCACTTCATTATTTACAAACTGTGAAGGTTGATGTTCAGATTTGTTACTTCAGAATTTTCAGTCCATGTTCATACATAGTGACTTCTTTTCACTGTTAACCCCCATAATCGATTTTCTAAGCCTGTGTGCGTTGGCCTGGTGAAGGGGAAACTACTGACTATTGAACCATTAGTGTAGCCAGTTTTGCCCACTTCAGTGTAGCAACCAACAATGTCAGAGCTGAAATTGAATATCTTTTATGTAAAGCAAATATGGCTGATTATGTTTTTTTGAATAGATATTGCTGATAATCTGAAATGATATTTTACTTGTGAAATGATCTTTGCTCTTTTATGTTGTGCCGTTCTTTTTTTTTTTTAATTAACTTACATTACTGAATAGCAAATAAATAAAGAAACTTTGGTACTACTAAGATTTTCCTTTAAATATGCTAGGCATTTTTAAAAGGCCAGTATTTAGTTTAATTGGGTTTACCGTCAAACCTAAATGTGGGATAGTCTCACTGAAAGTTGTAGATAACTTTGCATATAGTGTTTATTTTGGTTGGGAAAGCCACTCAATTTTGGTCATCTGCTTCCTAGAATCTTCCATTTTCCTTTGTGCCAAGATTTCTGAATCTAAACTAGCATTGTCGCAGTGGGAATTGAGGGTATCATATCATTGGCTCCGTAGTGACTTTACTTATTTTTGGACAATTCAACCAATAAAAATATGAGCTCTACTTTCTTATCTTTCTATTTCACGTAGTGACTTTAGCATTGTATTTTATTATTTTATATGTGCCATATGCTTTGCATGGAACCGTGATGCATAGTGTCCACCATCTATATTTTATGTACACGTTAGATTTGCTTACTTTTGTTTCGAAATTAGAGCACCTGTTTTTATTTTTATTTTCATTAATTTCTGTCAAAAGATAATATGCCTAAGTTGATACATTGTAAATTTGCACGCGGAGGTTTTAGGTTGATGCAATACAGGCTTGTGGAGGCCAAAAGACTGCTGATGGTAGACGATTTCGGAGTGGGGGTGGCATACTGTGGAACATCATAAAGGTTCAGGAACCAAAGGCCTACAAAGAGATAATGAAAAGAGCAAAAGAGTTTGAGGTATGTGAATAATCTTTATATTTTTGGGTGGGGAGGAACTTAGGATTTCATCTTGTCTCGTTGATACTTGGTTGGTGACAACTAAATTCGGGATTCACAAAAATAAGATTGATATTGTGTCACCAGCCATGTATGTTTGTAGTAACTATTAAGTAGGGGTTGTTTTTCATTTTTCTATCCAAATAAATCAAGTAAAGGCTTCTCTTTGTTTCAGATGACAGTGTAACTTTTTAGTTGTTGCATCTATATGCTTTTACTTCTAAATAATGTTATCAAGACTTCTGATTGTTAACTGCTGCTTAATAACTACTTTTTTAAGTCATTGCTTGTATTAATGCAGAAGCAATTCAGGCAGCCAAATGTTAAACAACTAAATATGCCAAAGAAAGATGATTCTTCTCAAGGTTTGGCCTTATCATTTGCTGGCAGTGATCAAGGAAATGTTTCAGACAGCGCCTTTCTTGCATCAGAAATGCAAAATCAACACGAACCGGTTACTTCTAAAGAAAATTTTATATCTGTTCATGACAGGTTAAGGATACCTGTTTCCTATGATGATGATCTACTTGGAGATAATCCAGTCAATGATGCAACATGA
Protein sequence

>MS.gene37438.t1

MVYTAAGCLGMFALSDIIKEVDAIQACGGQKTADGRRFRSGGGILWNIIKVQEPKAYKEIMKRAKEFEKQFRQPNVKQLNMPKKDDSSQGLALSFAGSDQGNVSDSAFLASEMQNQHEPVTSKENFISVHDRLRIPVSYDDDLLGDNPVNDAT