Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37439.t1 | XP_003603121.1 | 94.8 | 424 | 14 | 2 | 9 | 427 | 4 | 424 | 2.60E-236 | 828.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37439.t1 | Q39119 | 76.2 | 429 | 99 | 1 | 1 | 426 | 5 | 433 | 6.8e-201 | 702.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37439.t1 | G7J7K1 | 94.8 | 424 | 14 | 2 | 9 | 427 | 4 | 424 | 1.9e-236 | 828.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene37439.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057127 | MS.gene37439 | 0.81005 | 1.40E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene37439 | MS.gene011501 | PPI |
MS.gene37439 | MS.gene012825 | PPI |
MS.gene32828 | MS.gene37439 | PPI |
MS.gene62867 | MS.gene37439 | PPI |
MS.gene71909 | MS.gene37439 | PPI |
MS.gene37439 | MS.gene015031 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37439.t1 | MTR_3g104120 | 94.145 | 427 | 17 | 2 | 6 | 427 | 1 | 424 | 0.0 | 843 |
MS.gene37439.t1 | MTR_1g016780 | 73.502 | 434 | 105 | 5 | 1 | 427 | 3 | 433 | 0.0 | 657 |
MS.gene37439.t1 | MTR_3g104100 | 93.404 | 379 | 25 | 0 | 441 | 819 | 1 | 379 | 0.0 | 644 |
MS.gene37439.t1 | MTR_2g081040 | 81.201 | 383 | 50 | 1 | 437 | 819 | 1 | 361 | 0.0 | 526 |
MS.gene37439.t1 | MTR_3g030700 | 73.196 | 388 | 86 | 3 | 437 | 819 | 1 | 375 | 5.79e-179 | 519 |
MS.gene37439.t1 | MTR_4g101730 | 59.406 | 404 | 154 | 4 | 25 | 426 | 38 | 433 | 1.68e-171 | 504 |
MS.gene37439.t1 | MTR_7g032230 | 52.551 | 392 | 170 | 3 | 46 | 427 | 28 | 413 | 1.71e-150 | 449 |
MS.gene37439.t1 | MTR_4g101730 | 62.985 | 335 | 114 | 4 | 25 | 357 | 38 | 364 | 7.38e-148 | 439 |
MS.gene37439.t1 | MTR_7g079140 | 52.972 | 387 | 167 | 3 | 50 | 427 | 45 | 425 | 3.07e-135 | 410 |
MS.gene37439.t1 | MTR_7g075310 | 48.615 | 397 | 187 | 5 | 41 | 427 | 29 | 418 | 1.26e-120 | 372 |
MS.gene37439.t1 | MTR_3g498695 | 46.415 | 265 | 118 | 2 | 555 | 819 | 242 | 482 | 4.30e-67 | 231 |
MS.gene37439.t1 | MTR_3g498695 | 46.038 | 265 | 118 | 3 | 555 | 819 | 242 | 481 | 1.16e-64 | 224 |
MS.gene37439.t1 | MTR_7g083900 | 56.085 | 189 | 81 | 1 | 633 | 819 | 284 | 472 | 1.24e-57 | 205 |
MS.gene37439.t1 | MTR_7g083900 | 55.789 | 190 | 81 | 2 | 633 | 819 | 284 | 473 | 7.56e-57 | 202 |
MS.gene37439.t1 | MTR_5g030770 | 40.000 | 195 | 95 | 6 | 623 | 814 | 141 | 316 | 4.33e-29 | 119 |
MS.gene37439.t1 | MTR_3g111290 | 35.938 | 192 | 99 | 4 | 624 | 815 | 162 | 329 | 1.62e-28 | 117 |
MS.gene37439.t1 | MTR_5g030770 | 38.462 | 195 | 92 | 5 | 623 | 814 | 141 | 310 | 3.17e-27 | 113 |
MS.gene37439.t1 | MTR_2g058550 | 29.545 | 176 | 121 | 3 | 53 | 226 | 6 | 180 | 2.08e-21 | 97.4 |
MS.gene37439.t1 | MTR_1g112680 | 28.692 | 237 | 139 | 6 | 602 | 814 | 283 | 513 | 2.87e-21 | 99.0 |
MS.gene37439.t1 | MTR_2g058550 | 28.571 | 189 | 132 | 3 | 40 | 226 | 31 | 218 | 3.01e-21 | 97.4 |
MS.gene37439.t1 | MTR_1g085630 | 29.016 | 193 | 130 | 5 | 53 | 242 | 29 | 217 | 1.28e-19 | 91.3 |
MS.gene37439.t1 | MTR_8g064700 | 28.571 | 189 | 128 | 3 | 625 | 813 | 234 | 415 | 6.84e-18 | 87.4 |
MS.gene37439.t1 | MTR_8g024770 | 33.133 | 166 | 99 | 4 | 625 | 785 | 265 | 423 | 9.52e-17 | 84.3 |
MS.gene37439.t1 | MTR_4g057270 | 32.370 | 173 | 100 | 5 | 626 | 791 | 140 | 302 | 3.03e-16 | 81.3 |
MS.gene37439.t1 | MTR_8g024790 | 32.323 | 198 | 113 | 7 | 625 | 814 | 277 | 461 | 5.24e-16 | 82.0 |
MS.gene37439.t1 | MTR_2g084280 | 30.303 | 198 | 118 | 6 | 622 | 816 | 122 | 302 | 9.67e-16 | 79.3 |
MS.gene37439.t1 | MTR_8g067280 | 29.518 | 166 | 116 | 1 | 623 | 787 | 450 | 615 | 5.38e-14 | 76.3 |
MS.gene37439.t1 | MTR_2g010450 | 24.757 | 206 | 136 | 4 | 586 | 791 | 138 | 324 | 2.97e-13 | 72.4 |
MS.gene37439.t1 | MTR_4g092700 | 24.876 | 201 | 119 | 5 | 603 | 791 | 124 | 304 | 3.33e-13 | 72.0 |
MS.gene37439.t1 | MTR_1g072320 | 29.744 | 195 | 110 | 6 | 621 | 802 | 451 | 631 | 1.57e-12 | 71.6 |
MS.gene37439.t1 | MTR_2g038040 | 31.492 | 181 | 103 | 8 | 634 | 801 | 51 | 223 | 2.31e-12 | 68.2 |
MS.gene37439.t1 | MTR_5g030430 | 29.279 | 222 | 131 | 8 | 612 | 812 | 453 | 669 | 6.42e-12 | 69.7 |
MS.gene37439.t1 | MTR_5g014600 | 25.000 | 212 | 144 | 4 | 584 | 791 | 108 | 308 | 9.28e-12 | 67.8 |
MS.gene37439.t1 | MTR_0250s0040 | 25.641 | 195 | 129 | 3 | 600 | 791 | 53 | 234 | 2.63e-11 | 65.5 |
MS.gene37439.t1 | MTR_4g066460 | 27.273 | 176 | 107 | 3 | 624 | 791 | 136 | 298 | 4.57e-11 | 65.5 |
MS.gene37439.t1 | MTR_8g027495 | 24.309 | 181 | 108 | 4 | 639 | 814 | 462 | 618 | 7.91e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37439.t1 | AT4G32940 | 79.800 | 401 | 81 | 0 | 25 | 425 | 32 | 432 | 0.0 | 674 |
MS.gene37439.t1 | AT2G25940 | 73.223 | 422 | 102 | 3 | 6 | 427 | 8 | 418 | 0.0 | 652 |
MS.gene37439.t1 | AT1G62710 | 61.795 | 390 | 141 | 4 | 41 | 427 | 40 | 424 | 9.07e-172 | 505 |
MS.gene37439.t1 | AT3G20210 | 53.364 | 431 | 187 | 5 | 1 | 429 | 5 | 423 | 1.42e-147 | 442 |
MS.gene37439.t1 | AT3G26744 | 56.354 | 181 | 79 | 0 | 633 | 813 | 305 | 485 | 2.41e-61 | 216 |
MS.gene37439.t1 | AT3G26744 | 56.354 | 181 | 79 | 0 | 633 | 813 | 305 | 485 | 2.41e-61 | 216 |
MS.gene37439.t1 | AT3G26744 | 56.354 | 181 | 79 | 0 | 633 | 813 | 305 | 485 | 2.41e-61 | 216 |
MS.gene37439.t1 | AT1G12860 | 55.495 | 182 | 75 | 2 | 633 | 813 | 265 | 441 | 7.07e-58 | 205 |
MS.gene37439.t1 | AT3G26744 | 56.442 | 163 | 71 | 0 | 633 | 795 | 305 | 467 | 5.16e-55 | 197 |
MS.gene37439.t1 | AT1G12860 | 55.488 | 164 | 67 | 2 | 633 | 795 | 265 | 423 | 1.56e-51 | 186 |
MS.gene37439.t1 | AT5G10570 | 37.313 | 201 | 89 | 6 | 622 | 814 | 135 | 306 | 1.23e-23 | 103 |
MS.gene37439.t1 | AT2G16910 | 36.598 | 194 | 108 | 5 | 634 | 814 | 313 | 504 | 2.14e-23 | 105 |
MS.gene37439.t1 | AT5G65640 | 36.816 | 201 | 104 | 6 | 619 | 814 | 160 | 342 | 2.34e-23 | 102 |
MS.gene37439.t1 | AT1G08750 | 28.409 | 176 | 123 | 3 | 53 | 226 | 28 | 202 | 1.02e-20 | 95.9 |
MS.gene37439.t1 | AT1G08750 | 28.409 | 176 | 123 | 3 | 53 | 226 | 28 | 202 | 1.02e-20 | 95.9 |
MS.gene37439.t1 | AT1G08750 | 28.409 | 176 | 123 | 3 | 53 | 226 | 28 | 202 | 1.02e-20 | 95.9 |
MS.gene37439.t1 | AT5G46760 | 29.091 | 220 | 133 | 5 | 609 | 813 | 374 | 585 | 4.02e-15 | 79.7 |
MS.gene37439.t1 | AT2G28160 | 31.319 | 182 | 74 | 6 | 622 | 782 | 120 | 271 | 5.35e-15 | 77.4 |
MS.gene37439.t1 | AT2G28160 | 31.319 | 182 | 74 | 6 | 622 | 782 | 120 | 271 | 5.65e-15 | 77.4 |
MS.gene37439.t1 | AT4G17880 | 30.151 | 199 | 117 | 8 | 625 | 816 | 402 | 585 | 6.84e-15 | 79.0 |
MS.gene37439.t1 | AT5G65640 | 52.703 | 74 | 33 | 1 | 619 | 690 | 160 | 233 | 2.39e-13 | 72.0 |
MS.gene37439.t1 | AT5G41315 | 29.082 | 196 | 115 | 3 | 638 | 815 | 444 | 633 | 3.11e-12 | 70.9 |
MS.gene37439.t1 | AT5G41315 | 29.082 | 196 | 115 | 3 | 638 | 815 | 452 | 641 | 3.20e-12 | 70.9 |
MS.gene37439.t1 | AT5G41315 | 29.082 | 196 | 115 | 3 | 638 | 815 | 449 | 638 | 3.24e-12 | 70.5 |
MS.gene37439.t1 | AT4G00870 | 35.593 | 118 | 66 | 2 | 582 | 691 | 190 | 305 | 3.27e-12 | 70.1 |
MS.gene37439.t1 | AT1G32640 | 29.167 | 192 | 110 | 7 | 612 | 789 | 418 | 597 | 1.32e-11 | 68.6 |
MS.gene37439.t1 | AT5G57150 | 26.455 | 189 | 128 | 3 | 627 | 810 | 46 | 228 | 1.46e-11 | 65.9 |
MS.gene37439.t1 | AT4G29930 | 28.289 | 152 | 92 | 2 | 634 | 784 | 53 | 188 | 1.58e-11 | 65.5 |
MS.gene37439.t1 | AT4G09820 | 27.381 | 168 | 88 | 6 | 628 | 791 | 353 | 490 | 1.95e-11 | 67.8 |
MS.gene37439.t1 | AT1G63650 | 29.255 | 188 | 120 | 5 | 638 | 815 | 408 | 592 | 1.98e-11 | 68.2 |
MS.gene37439.t1 | AT1G63650 | 29.255 | 188 | 120 | 5 | 638 | 815 | 408 | 592 | 1.98e-11 | 68.2 |
MS.gene37439.t1 | AT1G63650 | 29.255 | 188 | 120 | 5 | 638 | 815 | 408 | 592 | 1.98e-11 | 68.2 |
MS.gene37439.t1 | AT2G46510 | 42.308 | 78 | 38 | 1 | 620 | 690 | 373 | 450 | 2.01e-11 | 67.8 |
MS.gene37439.t1 | AT4G29930 | 28.395 | 162 | 105 | 4 | 634 | 784 | 53 | 214 | 2.19e-11 | 65.5 |
MS.gene37439.t1 | AT5G57150 | 44.595 | 74 | 39 | 1 | 627 | 698 | 47 | 120 | 2.82e-11 | 65.5 |
MS.gene37439.t1 | AT4G29930 | 29.299 | 157 | 81 | 3 | 634 | 784 | 53 | 185 | 3.05e-11 | 64.7 |
MS.gene37439.t1 | AT5G57150 | 44.595 | 74 | 39 | 1 | 627 | 698 | 46 | 119 | 3.79e-11 | 64.3 |
MS.gene37439.t1 | AT4G29930 | 29.299 | 157 | 81 | 3 | 634 | 784 | 53 | 185 | 6.47e-11 | 63.5 |
MS.gene37439.t1 | AT4G29930 | 46.552 | 58 | 31 | 0 | 634 | 691 | 53 | 110 | 6.62e-11 | 62.8 |
MS.gene37439.t1 | AT5G57150 | 28.049 | 164 | 107 | 3 | 627 | 785 | 47 | 204 | 8.08e-11 | 63.2 |
MS.gene37439.t1 | AT5G57150 | 28.049 | 164 | 107 | 3 | 627 | 785 | 47 | 204 | 8.82e-11 | 63.2 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATAGTCTATTCCTATATT+TGG | 0.119477 | 3.4:-91330180 | MS.gene37439:CDS |
CCCAAGCATGTTTCATATTC+TGG | 0.141255 | 3.4:+91331273 | None:intergenic |
ATGCAGATCTCGTCCATTTC+TGG | 0.141464 | 3.4:-91330076 | MS.gene37439:CDS |
GTTCCACTCTTCTTCGATTT+GGG | 0.166814 | 3.4:+91321233 | None:intergenic |
ATTCGGTAGATTTGAGAAAT+TGG | 0.188390 | 3.4:+91321062 | None:intergenic |
TGTTCCACTCTTCTTCGATT+TGG | 0.238362 | 3.4:+91321232 | None:intergenic |
TATCTAGAGGCATGCGAATC+TGG | 0.256590 | 3.4:-91331411 | MS.gene37439:CDS |
TAGATTTGAGAAATTGGATT+TGG | 0.261790 | 3.4:+91321068 | None:intergenic |
TACGATACCTTGGTAATCTT+TGG | 0.271309 | 3.4:+91320598 | None:intergenic |
GTTGAAGGAGTTTGAGAATA+AGG | 0.272801 | 3.4:-91320914 | MS.gene37439:CDS |
TCAAACGGAAATTCAATATA+TGG | 0.274902 | 3.4:-91330242 | MS.gene37439:CDS |
AGATCAGTTGCGTACATAAA+TGG | 0.288355 | 3.4:+91331575 | None:intergenic |
CCATGGTGGTCCTGGAGTGC+TGG | 0.294303 | 3.4:-91332439 | MS.gene37439:CDS |
TGCCAACAAACCAGGTGTTT+TGG | 0.303987 | 3.4:-91313075 | MS.gene37439:CDS |
TTAAGACCTGACACATTGTT+AGG | 0.304905 | 3.4:+91314985 | None:intergenic |
GGCAACCTGTTGTCGATGAC+TGG | 0.305558 | 3.4:-91328622 | MS.gene37439:CDS |
ATCTTACCAATTCATATTGC+TGG | 0.316404 | 3.4:+91330482 | None:intergenic |
GGTATTTGCAGGTAGATGTT+AGG | 0.324730 | 3.4:-91313136 | MS.gene37439:intron |
AACTTCTTCGCTGCTTTACT+TGG | 0.336272 | 3.4:-91332543 | MS.gene37439:CDS |
CCCCAAAACACCTGGTTTGT+TGG | 0.337017 | 3.4:+91313073 | None:intergenic |
GAAATGGTACCAGTGATTTC+AGG | 0.337247 | 3.4:+91328594 | None:intergenic |
TTGCTGGTTCCAACGGCTAC+TGG | 0.338003 | 3.4:-91333066 | MS.gene37439:CDS |
TGCAGCTCAGAAGCAAGTTC+TGG | 0.349259 | 3.4:-91328753 | MS.gene37439:CDS |
GGAAATAAGTCAGCTCTTAC+TGG | 0.349667 | 3.4:-91332522 | MS.gene37439:CDS |
GATAGTCTATTCCTATATTT+GGG | 0.353172 | 3.4:-91330179 | MS.gene37439:CDS |
AAGAAAATGAGGAACCTAAA+TGG | 0.357926 | 3.4:+91321100 | None:intergenic |
TATATAAATATGTGATCATT+AGG | 0.358233 | 3.4:+91332471 | None:intergenic |
GCATAGATATTCAGACCTTC+AGG | 0.361070 | 3.4:+91331366 | None:intergenic |
CTAACACTGGTGAGCACCTC+TGG | 0.366616 | 3.4:+91328653 | None:intergenic |
TCAGTTCCGCAAAGCTCCTC+AGG | 0.372421 | 3.4:-91328792 | MS.gene37439:intron |
AGATGTTAGGGTAAGGGAAG+GGG | 0.376203 | 3.4:-91313123 | MS.gene37439:CDS |
CAATACCGCTTTAATTTGTC+CGG | 0.376614 | 3.4:+91312210 | None:intergenic |
TTGCACAATTAACCTCGATA+TGG | 0.377511 | 3.4:-91320936 | MS.gene37439:CDS |
TTGATATTGTCATTGATATT+CGG | 0.377584 | 3.4:+91321045 | None:intergenic |
CCAAGCATGTTTCATATTCT+GGG | 0.378407 | 3.4:+91331274 | None:intergenic |
AGATTTGAGAAATTGGATTT+GGG | 0.379683 | 3.4:+91321069 | None:intergenic |
CAGGATTTGATCCCAAATAT+AGG | 0.380539 | 3.4:+91330168 | None:intergenic |
ATGGACAAAATTTCAATACT+TGG | 0.390066 | 3.4:-91315171 | MS.gene37439:CDS |
GACGAGAGCATAAAACTTGT+TGG | 0.390110 | 3.4:-91328704 | MS.gene37439:CDS |
AGATGGGCCATCTTAATTGC+TGG | 0.399526 | 3.4:-91333082 | MS.gene37439:CDS |
AGCAATTAAGATGGCCCATC+TGG | 0.399802 | 3.4:+91333084 | None:intergenic |
GATGTTAGGGTAAGGGAAGG+GGG | 0.402944 | 3.4:-91313122 | MS.gene37439:CDS |
TTTGCACCAGCAATATGAAT+TGG | 0.403123 | 3.4:-91330488 | MS.gene37439:intron |
GTTGAAAATTGTGTTGTTGA+TGG | 0.411984 | 3.4:-91320727 | MS.gene37439:CDS |
TAGAAGCTTGGGAGGGTAAT+CGG | 0.413039 | 3.4:+91333152 | None:intergenic |
AGCGGTATTGTTGAAGGCAT+TGG | 0.419346 | 3.4:-91312197 | MS.gene37439:CDS |
ACTGCTTTCTTCTGCATTTG+CGG | 0.423296 | 3.4:+91331335 | None:intergenic |
CTCACCAGTGTTAGACCAGC+TGG | 0.425571 | 3.4:-91328644 | MS.gene37439:CDS |
GTTTGTTGGCACAAAACATA+TGG | 0.425578 | 3.4:+91313087 | None:intergenic |
TTCTGAGCTGCAACTTTCCT+AGG | 0.426763 | 3.4:+91328764 | None:intergenic |
AGGATACCTTATCCCAGAAA+TGG | 0.427714 | 3.4:+91330063 | None:intergenic |
AAGTAAATAAGTACCTTTGT+TGG | 0.430963 | 3.4:+91314955 | None:intergenic |
TGGATTTCAGGGATGCCTAC+TGG | 0.432019 | 3.4:-91331599 | MS.gene37439:intron |
TATAGTGACCATGGTGGTCC+TGG | 0.434418 | 3.4:-91332447 | MS.gene37439:CDS |
TTTCTGCCTTCGCTTCTTCT+CGG | 0.437246 | 3.4:+91320657 | None:intergenic |
TGGACAAAATTTCAATACTT+GGG | 0.438929 | 3.4:-91315170 | MS.gene37439:CDS |
GGTTCCCATGTGATGCAATA+TGG | 0.439255 | 3.4:-91330221 | MS.gene37439:CDS |
TGCAGATCTCGTCCATTTCT+GGG | 0.441910 | 3.4:-91330075 | MS.gene37439:CDS |
TCGGCGATGAGACTCTTTGA+TGG | 0.448765 | 3.4:+91320676 | None:intergenic |
CAGTCCCAGTCATCGACAAC+AGG | 0.453162 | 3.4:+91328617 | None:intergenic |
TCTCGTCCATTTCTGGGATA+AGG | 0.453393 | 3.4:-91330069 | MS.gene37439:intron |
CGAATCTGGGAGTATCTTTG+AGG | 0.457995 | 3.4:-91331397 | MS.gene37439:CDS |
CCCAGAATATGAAACATGCT+TGG | 0.460112 | 3.4:-91331274 | MS.gene37439:CDS |
ATCTTAATTGCTGGTTCCAA+CGG | 0.463391 | 3.4:-91333073 | MS.gene37439:CDS |
ACCATCACCAACAATCCATT+TGG | 0.465647 | 3.4:-91321009 | MS.gene37439:CDS |
ATCGGAAGAATCTAGAAGCT+TGG | 0.465884 | 3.4:+91333140 | None:intergenic |
GATCAACAACAAAACATTGT+TGG | 0.466441 | 3.4:-91321156 | MS.gene37439:CDS |
TTGAAAATTGTGTTGTTGAT+GGG | 0.466467 | 3.4:-91320726 | MS.gene37439:CDS |
GTATTTGCAGGTAGATGTTA+GGG | 0.469646 | 3.4:-91313135 | MS.gene37439:intron |
GGGTGGCGATGAGGAGAAAG+AGG | 0.470171 | 3.4:+91333209 | None:intergenic |
AGTGTTGGTGTTGGGAAGAT+GGG | 0.474014 | 3.4:-91320835 | MS.gene37439:CDS |
TTTGAGGGTCTTCTTCCTGA+AGG | 0.474267 | 3.4:-91331381 | MS.gene37439:CDS |
TTCTTTCATTTGAACTGGAA+GGG | 0.474550 | 3.4:+91315017 | None:intergenic |
TGCAGGTAGATGTTAGGGTA+AGG | 0.474740 | 3.4:-91313130 | MS.gene37439:intron |
ATCTAGAGGCATGCGAATCT+GGG | 0.476539 | 3.4:-91331410 | MS.gene37439:CDS |
CCATCCAAGCAACACTGTAT+AGG | 0.476585 | 3.4:+91331247 | None:intergenic |
AATTAAAGCGGTATTGTTGA+AGG | 0.477783 | 3.4:-91312203 | MS.gene37439:CDS |
GAGAAATTGGATTTGGGTGA+TGG | 0.477857 | 3.4:+91321075 | None:intergenic |
TTATGTCCTAACAATGTGTC+AGG | 0.478443 | 3.4:-91314991 | MS.gene37439:CDS |
GCAGGTAGATGTTAGGGTAA+GGG | 0.478930 | 3.4:-91313129 | MS.gene37439:intron |
GGGATAAGTTCTTCGATACA+AGG | 0.479295 | 3.4:+91321195 | None:intergenic |
TATAATGCAAATAACAATGT+TGG | 0.480147 | 3.4:-91320784 | MS.gene37439:CDS |
GAGTGTTGGTGTTGGGAAGA+TGG | 0.482223 | 3.4:-91320836 | MS.gene37439:CDS |
TTCCACTCTTCTTCGATTTG+GGG | 0.482765 | 3.4:+91321234 | None:intergenic |
ATGAAGGCATTGGATAGCCT+TGG | 0.483753 | 3.4:-91313044 | MS.gene37439:CDS |
CCTTGGATTGGATGTTCACC+AGG | 0.489700 | 3.4:-91313027 | MS.gene37439:CDS |
TCGACAACAGGTTGCCCAGC+TGG | 0.490466 | 3.4:+91328629 | None:intergenic |
GGCATTGGATAGCCTTGGAT+TGG | 0.491632 | 3.4:-91313039 | MS.gene37439:CDS |
GGCGGTGGCATAAATGATAT+AGG | 0.492043 | 3.4:+91315075 | None:intergenic |
CCTATACAGTGTTGCTTGGA+TGG | 0.492351 | 3.4:-91331247 | MS.gene37439:CDS |
CGGTGGTGTCAGCGGAGATG+AGG | 0.495717 | 3.4:+91333188 | None:intergenic |
CATGGTGGTCCTGGAGTGCT+GGG | 0.496285 | 3.4:-91332438 | MS.gene37439:intron |
AATCACTAACCCAGCACTCC+AGG | 0.496753 | 3.4:+91332429 | None:intergenic |
GACATTACCAAATGGATTGT+TGG | 0.497830 | 3.4:+91321002 | None:intergenic |
ATGGAGAGAGATATGCTACC+TGG | 0.497924 | 3.4:-91321264 | MS.gene37439:CDS |
TCGGAAGAATCTAGAAGCTT+GGG | 0.498014 | 3.4:+91333141 | None:intergenic |
TTGTTATCGTCGTCGTCGGA+TGG | 0.498216 | 3.4:+91333115 | None:intergenic |
TAAAACAGCTTATGTTAGCC+TGG | 0.498246 | 3.4:+91313009 | None:intergenic |
AGTTGGGGAACATATTGTCC+TGG | 0.498868 | 3.4:-91331315 | MS.gene37439:CDS |
GAGAACCCTGAGGAGCTTTG+CGG | 0.499223 | 3.4:+91328786 | None:intergenic |
CGTCGTCGTCGGATGGTGAT+CGG | 0.499739 | 3.4:+91333122 | None:intergenic |
TCATTTATGCCACCGCCTAC+AGG | 0.499787 | 3.4:-91315069 | MS.gene37439:CDS |
TTTCTTTCATTTGAACTGGA+AGG | 0.499926 | 3.4:+91315016 | None:intergenic |
AAATGCAGAAGAAAGCAGTT+GGG | 0.504119 | 3.4:-91331331 | MS.gene37439:CDS |
GGCGATGAGGAGAAAGAGGA+AGG | 0.506577 | 3.4:+91333213 | None:intergenic |
TAGATGTTAGGGTAAGGGAA+GGG | 0.507834 | 3.4:-91313124 | MS.gene37439:CDS |
TCAGCTCTTACTGGTGGCAG+TGG | 0.508268 | 3.4:-91332513 | MS.gene37439:CDS |
AAATAAGTACCTTTGTTGGT+TGG | 0.508995 | 3.4:+91314959 | None:intergenic |
GTGTTGCTTGGATGGAAGAC+AGG | 0.514105 | 3.4:-91331239 | MS.gene37439:intron |
AGTGGAAAGGTTGTGGATAG+TGG | 0.514266 | 3.4:-91332495 | MS.gene37439:CDS |
CAAATGCAGAAGAAAGCAGT+TGG | 0.515881 | 3.4:-91331332 | MS.gene37439:CDS |
CTACTGGAATTACAGACATC+AGG | 0.516609 | 3.4:-91333050 | MS.gene37439:intron |
GAGGAAAGGTGGTTTGAAAG+AGG | 0.518582 | 3.4:-91332810 | MS.gene37439:CDS |
GAGAATAAGGCGGAAACAGA+TGG | 0.519276 | 3.4:-91320901 | MS.gene37439:CDS |
GTGACCTATACAGTGTTGCT+TGG | 0.519998 | 3.4:-91331251 | MS.gene37439:CDS |
AGAAAGAGGAAGGTGAGTAA+TGG | 0.520043 | 3.4:+91333223 | None:intergenic |
CCAGAATATGAAACATGCTT+GGG | 0.523254 | 3.4:-91331273 | MS.gene37439:CDS |
GGGGTCGACTATGAAGGCAT+TGG | 0.524597 | 3.4:-91313054 | MS.gene37439:CDS |
AATCTCTATATGTTTCTCAA+TGG | 0.530751 | 3.4:-91321283 | MS.gene37439:CDS |
TTAATGATGACTCCGGGACG+TGG | 0.531346 | 3.4:+91332737 | None:intergenic |
CTAATGAGAGTGTTGGTGTT+GGG | 0.532269 | 3.4:-91320843 | MS.gene37439:CDS |
TCGATTTGGGGTTTCAACCC+AGG | 0.534429 | 3.4:+91321246 | None:intergenic |
TTCATTGTTATCGTCGTCGT+CGG | 0.536032 | 3.4:+91333111 | None:intergenic |
GTTGGGGAACATATTGTCCT+GGG | 0.538647 | 3.4:-91331314 | MS.gene37439:CDS |
TGTTTACAAGGGAGTCCCTA+AGG | 0.540741 | 3.4:-91332696 | MS.gene37439:intron |
ACAGAAGTATTTGGGTCTGA+AGG | 0.541178 | 3.4:+91321132 | None:intergenic |
GTTGTTGATGGGAACCGAAA+AGG | 0.541244 | 3.4:-91320715 | MS.gene37439:CDS |
ATTAACCTCGATATGGTTGA+AGG | 0.542070 | 3.4:-91320929 | MS.gene37439:CDS |
AAGCTCCTCAGGGTTCTCCT+AGG | 0.543065 | 3.4:-91328781 | MS.gene37439:CDS |
GTCAAAGAAAGGACTTCAAA+CGG | 0.544666 | 3.4:-91330257 | MS.gene37439:CDS |
TATTCTCACAGGTCAAAGAA+AGG | 0.546821 | 3.4:-91330268 | MS.gene37439:intron |
AATGACAATATCAACATCAC+TGG | 0.551581 | 3.4:-91321036 | MS.gene37439:CDS |
AAATTGAAGACATTACCAAA+TGG | 0.551861 | 3.4:+91320994 | None:intergenic |
ACATGGAGATGATGTTTACA+AGG | 0.552199 | 3.4:-91332708 | MS.gene37439:CDS |
GAATCTGGGAGTATCTTTGA+GGG | 0.552413 | 3.4:-91331396 | MS.gene37439:CDS |
CTGGGACTGCCTGAAATCAC+TGG | 0.555312 | 3.4:-91328603 | MS.gene37439:intron |
GTCTTCAATTTAGATTCCCA+AGG | 0.555551 | 3.4:-91320982 | MS.gene37439:CDS |
TCTGTAATTCCAGTAGCCGT+TGG | 0.556790 | 3.4:+91333057 | None:intergenic |
GGACAAAATTTCAATACTTG+GGG | 0.557700 | 3.4:-91315169 | MS.gene37439:CDS |
GTGATGCAATATGGTGACAT+AGG | 0.558618 | 3.4:-91330212 | MS.gene37439:CDS |
GCAACCTGTTGTCGATGACT+GGG | 0.558781 | 3.4:-91328621 | MS.gene37439:CDS |
TGGTGGCAGTGGAAAGGTTG+TGG | 0.559194 | 3.4:-91332502 | MS.gene37439:CDS |
TTGTTGATGGGAACCGAAAA+GGG | 0.560485 | 3.4:-91320714 | MS.gene37439:CDS |
TTGAACTGGAAGGGCTGACA+TGG | 0.561404 | 3.4:+91315026 | None:intergenic |
ATCATCATCGGTGGTGTCAG+CGG | 0.566950 | 3.4:+91333180 | None:intergenic |
AATGCAAATAACAATGTTGG+CGG | 0.568331 | 3.4:-91320781 | MS.gene37439:CDS |
ATAGTCGACCCCAAAACACC+TGG | 0.568599 | 3.4:+91313065 | None:intergenic |
AATACCGCTTTAATTTGTCC+GGG | 0.573327 | 3.4:+91312211 | None:intergenic |
GGGTGATGGCAAAGAAAATG+AGG | 0.574590 | 3.4:+91321089 | None:intergenic |
GTTGGAACCAGCAATTAAGA+TGG | 0.576786 | 3.4:+91333075 | None:intergenic |
GTTAATTGTGCAACTGACAA+TGG | 0.577189 | 3.4:+91320946 | None:intergenic |
GGTGGTGTCAGCGGAGATGA+GGG | 0.579760 | 3.4:+91333189 | None:intergenic |
ATGTGAGTTCCTGTAGGCGG+TGG | 0.584540 | 3.4:+91315060 | None:intergenic |
TCTTACTGGTGGCAGTGGAA+AGG | 0.584675 | 3.4:-91332508 | MS.gene37439:CDS |
TCTAGATGTGTTCAAAGCTG+AGG | 0.585169 | 3.4:-91312976 | MS.gene37439:intron |
GGAAATGAAGAGGTTGGCGG+AGG | 0.586382 | 3.4:-91320880 | MS.gene37439:CDS |
ACAGATGGAAATGAAGAGGT+TGG | 0.589595 | 3.4:-91320886 | MS.gene37439:CDS |
TCATCGCCGAGAAGAAGCGA+AGG | 0.591349 | 3.4:-91320663 | MS.gene37439:CDS |
AAATGGATTGTTGGTGATGG+TGG | 0.593173 | 3.4:+91321011 | None:intergenic |
CAAGCATGTTTCATATTCTG+GGG | 0.594193 | 3.4:+91331275 | None:intergenic |
TGTCACCATATTGCATCACA+TGG | 0.594664 | 3.4:+91330216 | None:intergenic |
CAGTTCCGCAAAGCTCCTCA+GGG | 0.595255 | 3.4:-91328791 | MS.gene37439:CDS |
CGGAGATGAGGGTGGCGATG+AGG | 0.598347 | 3.4:+91333200 | None:intergenic |
GTTGGGAAGATGGGAAACCA+TGG | 0.598548 | 3.4:-91320826 | MS.gene37439:CDS |
GTAGATGTTAGGGTAAGGGA+AGG | 0.599192 | 3.4:-91313125 | MS.gene37439:CDS |
AAAGACCAAGAATTGACCCC+CGG | 0.603457 | 3.4:-91312229 | MS.gene37439:CDS |
GACGACGACGATAACAATGA+AGG | 0.604965 | 3.4:-91333109 | MS.gene37439:CDS |
GAAGAATCTAGAAGCTTGGG+AGG | 0.606421 | 3.4:+91333144 | None:intergenic |
GATGGAAATGAAGAGGTTGG+CGG | 0.607553 | 3.4:-91320883 | MS.gene37439:CDS |
ACCAAATGGATTGTTGGTGA+TGG | 0.608335 | 3.4:+91321008 | None:intergenic |
TAACAATGAAGGCACCAGAT+GGG | 0.610248 | 3.4:-91333098 | MS.gene37439:CDS |
TCTAATGAGAGTGTTGGTGT+TGG | 0.611113 | 3.4:-91320844 | MS.gene37439:CDS |
TGGACTGTTAATGATGACTC+CGG | 0.611333 | 3.4:+91332730 | None:intergenic |
GCGTATCAAGTGCTGAGGAA+AGG | 0.612522 | 3.4:-91332824 | MS.gene37439:CDS |
TTTATATACTATAGTGACCA+TGG | 0.612629 | 3.4:-91332456 | MS.gene37439:CDS |
CCTGGTGAACATCCAATCCA+AGG | 0.613572 | 3.4:+91313027 | None:intergenic |
TGATGCAATATGGTGACATA+GGG | 0.618734 | 3.4:-91330211 | MS.gene37439:CDS |
ATAACAATGAAGGCACCAGA+TGG | 0.625470 | 3.4:-91333099 | MS.gene37439:CDS |
AACCCCAAATCGAAGAAGAG+TGG | 0.625613 | 3.4:-91321236 | MS.gene37439:CDS |
TACCGCTTTAATTTGTCCGG+GGG | 0.625772 | 3.4:+91312213 | None:intergenic |
AATGAAGAGAATCCACGTCC+CGG | 0.627315 | 3.4:-91332749 | MS.gene37439:CDS |
TATCAAGTGCTGAGGAAAGG+TGG | 0.627902 | 3.4:-91332821 | MS.gene37439:CDS |
AATGCAGAAGAAAGCAGTTG+GGG | 0.630867 | 3.4:-91331330 | MS.gene37439:CDS |
TGGAGAGAGATATGCTACCT+GGG | 0.631619 | 3.4:-91321263 | MS.gene37439:CDS |
CATGACTCTAATGAGAGTGT+TGG | 0.632191 | 3.4:-91320850 | MS.gene37439:CDS |
TTGCCCAGCTGGTCTAACAC+TGG | 0.634610 | 3.4:+91328640 | None:intergenic |
GTCATCATTAACAGTCCACA+TGG | 0.638556 | 3.4:-91332725 | MS.gene37439:CDS |
GTCATAATGTGAGTTCCTGT+AGG | 0.642737 | 3.4:+91315054 | None:intergenic |
TCACCAGTGTTAGACCAGCT+GGG | 0.644964 | 3.4:-91328643 | MS.gene37439:CDS |
GTCACGCGTATCAAGTGCTG+AGG | 0.646281 | 3.4:-91332829 | MS.gene37439:CDS |
GGAAACAGATGGAAATGAAG+AGG | 0.646809 | 3.4:-91320890 | MS.gene37439:CDS |
TAATCGGAGAAAATCATCAT+CGG | 0.647677 | 3.4:+91333168 | None:intergenic |
GCGTACATAAATGGACCAGT+AGG | 0.648223 | 3.4:+91331584 | None:intergenic |
GGACGAGATCTGCATCACGC+TGG | 0.651136 | 3.4:+91330084 | None:intergenic |
TTGGGAAGATGGGAAACCAT+GGG | 0.652197 | 3.4:-91320825 | MS.gene37439:CDS |
GGACTGTTAATGATGACTCC+GGG | 0.652906 | 3.4:+91332731 | None:intergenic |
GAAGGAGTTTGAGAATAAGG+CGG | 0.653004 | 3.4:-91320911 | MS.gene37439:CDS |
ATACCGCTTTAATTTGTCCG+GGG | 0.659107 | 3.4:+91312212 | None:intergenic |
TGGTGACATAGGGCTAAGCA+AGG | 0.659410 | 3.4:-91330201 | MS.gene37439:CDS |
AAGCATGTTTCATATTCTGG+GGG | 0.659544 | 3.4:+91331276 | None:intergenic |
GGTGTCAGCGGAGATGAGGG+TGG | 0.662440 | 3.4:+91333192 | None:intergenic |
TGTTGTGCCAAAGATTACCA+AGG | 0.666150 | 3.4:-91320605 | MS.gene37439:intron |
AATAAGTCAGCTCTTACTGG+TGG | 0.668087 | 3.4:-91332519 | MS.gene37439:CDS |
GGAGGACTAGGATTCTCCCC+AGG | 0.674455 | 3.4:+91331297 | None:intergenic |
GTCACCATATTGCATCACAT+GGG | 0.675391 | 3.4:+91330217 | None:intergenic |
TCGGAGAAAATCATCATCGG+TGG | 0.676037 | 3.4:+91333171 | None:intergenic |
AAACTCCTTCAACCATATCG+AGG | 0.678488 | 3.4:+91320924 | None:intergenic |
CATGGAGATGATGTTTACAA+GGG | 0.689312 | 3.4:-91332707 | MS.gene37439:CDS |
TTGGGGAACATATTGTCCTG+GGG | 0.699390 | 3.4:-91331313 | MS.gene37439:CDS |
AAGAATCTAGAAGCTTGGGA+GGG | 0.699846 | 3.4:+91333145 | None:intergenic |
CCAGCACTCCAGGACCACCA+TGG | 0.701857 | 3.4:+91332439 | None:intergenic |
TTGTAAACATCATCTCCATG+TGG | 0.715539 | 3.4:+91332710 | None:intergenic |
ATAATGTGAGTTCCTGTAGG+CGG | 0.737699 | 3.4:+91315057 | None:intergenic |
ATAAGTTCTTCGATACAAGG+TGG | 0.749344 | 3.4:+91321198 | None:intergenic |
AATTGTGCAACTGACAATGG+AGG | 0.769372 | 3.4:+91320949 | None:intergenic |
ATATACTATAGTGACCATGG+TGG | 0.810223 | 3.4:-91332453 | MS.gene37439:CDS |
ACTTTCCTAGGAGAACCCTG+AGG | 0.817235 | 3.4:+91328776 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 91312186 | 91333257 | 91312186 | ID=MS.gene37439 |
chr3.4 | mRNA | 91312186 | 91333257 | 91312186 | ID=MS.gene37439.t1;Parent=MS.gene37439 |
chr3.4 | exon | 91333051 | 91333257 | 91333051 | ID=MS.gene37439.t1.exon1;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91333051 | 91333257 | 91333051 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91332697 | 91332861 | 91332697 | ID=MS.gene37439.t1.exon2;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91332697 | 91332861 | 91332697 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91332439 | 91332595 | 91332439 | ID=MS.gene37439.t1.exon3;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91332439 | 91332595 | 91332439 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91331526 | 91331611 | 91331526 | ID=MS.gene37439.t1.exon4;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91331526 | 91331611 | 91331526 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91331240 | 91331439 | 91331240 | ID=MS.gene37439.t1.exon5;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91331240 | 91331439 | 91331240 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91330489 | 91330537 | 91330489 | ID=MS.gene37439.t1.exon6;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91330489 | 91330537 | 91330489 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91330070 | 91330279 | 91330070 | ID=MS.gene37439.t1.exon7;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91330070 | 91330279 | 91330070 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91328604 | 91328810 | 91328604 | ID=MS.gene37439.t1.exon8;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91328604 | 91328810 | 91328604 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91320606 | 91321313 | 91320606 | ID=MS.gene37439.t1.exon9;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91320606 | 91321313 | 91320606 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91314969 | 91315193 | 91314969 | ID=MS.gene37439.t1.exon10;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91314969 | 91315193 | 91314969 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91312977 | 91313147 | 91312977 | ID=MS.gene37439.t1.exon11;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91312977 | 91313147 | 91312977 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
chr3.4 | exon | 91312186 | 91312260 | 91312186 | ID=MS.gene37439.t1.exon12;Parent=MS.gene37439.t1 |
chr3.4 | CDS | 91312186 | 91312260 | 91312186 | ID=cds.MS.gene37439.t1;Parent=MS.gene37439.t1 |
Gene Sequence |
Protein sequence |