Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057127.t1 | KEH35467.1 | 99.8 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.00E+00 | 1700.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057127.t1 | Q9FJD4 | 79.5 | 869 | 177 | 1 | 1 | 869 | 3 | 870 | 0.0e+00 | 1386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057127.t1 | A0A072V0X7 | 99.8 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.0e+00 | 1700.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049287 | MS.gene057127 | 0.840193 | 1.01E-57 | -1.69E-46 |
| MS.gene050786 | MS.gene057127 | 0.833733 | 4.50E-56 | -1.69E-46 |
| MS.gene054952 | MS.gene057127 | 0.845734 | 3.38E-59 | -1.69E-46 |
| MS.gene056971 | MS.gene057127 | 0.811342 | 7.34E-51 | -1.69E-46 |
| MS.gene057127 | MS.gene060810 | 0.807677 | 4.50E-50 | -1.69E-46 |
| MS.gene057127 | MS.gene060813 | 0.801178 | 1.02E-48 | -1.69E-46 |
| MS.gene057127 | MS.gene061523 | 0.800289 | 1.55E-48 | -1.69E-46 |
| MS.gene057127 | MS.gene064797 | 0.815214 | 1.04E-51 | -1.69E-46 |
| MS.gene057127 | MS.gene06684 | 0.997994 | 1.14E-253 | -1.69E-46 |
| MS.gene057127 | MS.gene06895 | 0.953517 | 2.30E-111 | -1.69E-46 |
| MS.gene057127 | MS.gene07158 | 0.826852 | 2.16E-54 | -1.69E-46 |
| MS.gene057127 | MS.gene09405 | 0.806486 | 8.04E-50 | -1.69E-46 |
| MS.gene057127 | MS.gene23936 | 0.804971 | 1.67E-49 | -1.69E-46 |
| MS.gene057127 | MS.gene24293 | 0.865738 | 4.75E-65 | -1.69E-46 |
| MS.gene057127 | MS.gene26951 | 0.83188 | 1.30E-55 | -1.69E-46 |
| MS.gene057127 | MS.gene26952 | 0.851554 | 8.23E-61 | -1.69E-46 |
| MS.gene057127 | MS.gene28922 | 0.809649 | 1.70E-50 | -1.69E-46 |
| MS.gene057127 | MS.gene37439 | 0.81005 | 1.40E-50 | -1.69E-46 |
| MS.gene057127 | MS.gene40219 | 0.816707 | 4.81E-52 | -1.69E-46 |
| MS.gene057127 | MS.gene42805 | 0.801821 | 7.52E-49 | -1.69E-46 |
| MS.gene057127 | MS.gene44704 | 0.806012 | 1.01E-49 | -1.69E-46 |
| MS.gene057127 | MS.gene45735 | -0.813853 | 2.07E-51 | -1.69E-46 |
| MS.gene057127 | MS.gene53820 | 0.811074 | 8.40E-51 | -1.69E-46 |
| MS.gene057127 | MS.gene58009 | 0.809545 | 1.79E-50 | -1.69E-46 |
| MS.gene057127 | MS.gene60145 | 0.812007 | 5.26E-51 | -1.69E-46 |
| MS.gene057127 | MS.gene73392 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene057127 | MS.gene74958 | 0.868117 | 8.28E-66 | -1.69E-46 |
| MS.gene057127 | MS.gene77452 | 0.880911 | 3.72E-70 | -1.69E-46 |
| MS.gene057127 | MS.gene89645 | 0.813347 | 2.68E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057127.t1 | MTR_3g491860 | 99.770 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1792 |
| MS.gene057127.t1 | MTR_3g491840 | 90.679 | 869 | 80 | 1 | 1 | 869 | 1 | 868 | 0.0 | 1591 |
| MS.gene057127.t1 | MTR_8g099785 | 77.995 | 868 | 188 | 2 | 1 | 867 | 3 | 868 | 0.0 | 1427 |
| MS.gene057127.t1 | MTR_1g059590 | 32.517 | 449 | 240 | 15 | 127 | 536 | 3 | 427 | 9.55e-40 | 156 |
| MS.gene057127.t1 | MTR_1g059590 | 31.881 | 436 | 215 | 15 | 133 | 536 | 9 | 394 | 1.35e-34 | 140 |
| MS.gene057127.t1 | MTR_1g112920 | 23.726 | 628 | 342 | 26 | 29 | 590 | 45 | 601 | 7.52e-21 | 99.0 |
| MS.gene057127.t1 | MTR_1g112920 | 23.726 | 628 | 342 | 26 | 29 | 590 | 45 | 601 | 9.37e-21 | 98.6 |
| MS.gene057127.t1 | MTR_2g006750 | 22.260 | 584 | 367 | 20 | 14 | 578 | 16 | 531 | 1.35e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057127.t1 | AT5G53480 | 79.517 | 869 | 177 | 1 | 1 | 869 | 3 | 870 | 0.0 | 1437 |
| MS.gene057127.t1 | AT3G08947 | 57.099 | 655 | 276 | 5 | 213 | 865 | 1 | 652 | 0.0 | 747 |
| MS.gene057127.t1 | AT3G08947 | 59.386 | 586 | 233 | 5 | 213 | 796 | 1 | 583 | 0.0 | 700 |
| MS.gene057127.t1 | AT2G16950 | 24.503 | 604 | 331 | 23 | 46 | 590 | 61 | 598 | 1.27e-26 | 117 |
| MS.gene057127.t1 | AT2G16950 | 24.507 | 608 | 330 | 24 | 46 | 590 | 61 | 602 | 7.97e-26 | 115 |
Find 223 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCTTGGTCTCTCTTTC+TGG | -0.012550 | 3.1:-73727251 | MS.gene057127:CDS |
| CTCTCCAAGCCATTGAATTC+TGG | 0.197925 | 3.1:-73726530 | MS.gene057127:CDS |
| AGAAAGTCTTCGGCAATTTC+AGG | 0.216352 | 3.1:-73727288 | MS.gene057127:CDS |
| TGACAAAGACTGTTGAATTA+AGG | 0.267917 | 3.1:+73724775 | None:intergenic |
| GGGATATTAGAGGCATATTC+TGG | 0.268252 | 3.1:-73725067 | MS.gene057127:CDS |
| GCATTTCCCTCATTAATAAT+AGG | 0.268484 | 3.1:+73726015 | None:intergenic |
| GACACCACTGCTTGGACTTT+GGG | 0.272684 | 3.1:-73726078 | MS.gene057127:CDS |
| GCAAAACCTTCCTGGTTTCT+TGG | 0.279761 | 3.1:-73727264 | MS.gene057127:CDS |
| CAGCCTTTCTCAGCAACATT+AGG | 0.287721 | 3.1:+73725949 | None:intergenic |
| TCCCCACATTCTCCAGTTCT+TGG | 0.294606 | 3.1:-73724990 | MS.gene057127:CDS |
| ACTAGAGCACTGAGCATAAA+TGG | 0.300642 | 3.1:+73726126 | None:intergenic |
| CAAGTTGTTGCTAAAATTGC+TGG | 0.301501 | 3.1:-73727020 | MS.gene057127:CDS |
| GTTTCTTGGTCTCTCTTTCT+GGG | 0.305155 | 3.1:-73727250 | MS.gene057127:CDS |
| TACATTAACTCTTTGAGAAA+TGG | 0.314718 | 3.1:-73725088 | MS.gene057127:CDS |
| GGCAGGTATTTAGCAAAATC+AGG | 0.324114 | 3.1:+73725442 | None:intergenic |
| ATACTGCAAGAGAACATATT+TGG | 0.329593 | 3.1:+73725570 | None:intergenic |
| TCAAGAAACTTGTAAAATTC+AGG | 0.332719 | 3.1:+73725421 | None:intergenic |
| AGACACCACTGCTTGGACTT+TGG | 0.341617 | 3.1:-73726079 | MS.gene057127:CDS |
| AACTTATAGGCCTTCTTTGT+GGG | 0.345240 | 3.1:-73725636 | MS.gene057127:CDS |
| GCTTCCCTCTGTCTCCAATC+TGG | 0.354117 | 3.1:+73726225 | None:intergenic |
| GCAGTATGCTGATCAGATAA+TGG | 0.356944 | 3.1:-73725554 | MS.gene057127:CDS |
| TTTCAGGAGCAAAACCTTCC+TGG | 0.362971 | 3.1:-73727272 | MS.gene057127:CDS |
| ATTCTTACTGCTGTAGTTCA+AGG | 0.372529 | 3.1:-73726837 | MS.gene057127:CDS |
| TTTGAGAAATGGGATATTAG+AGG | 0.373265 | 3.1:-73725077 | MS.gene057127:CDS |
| AACAGATATAGCACGATTGA+TGG | 0.383244 | 3.1:+73724676 | None:intergenic |
| AACAGATGAAACAGCTCCTT+TGG | 0.387973 | 3.1:-73725749 | MS.gene057127:CDS |
| AGCCTTTCTCAGCAACATTA+GGG | 0.389846 | 3.1:+73725950 | None:intergenic |
| GGTTTAGTTGCTCGTACTAC+TGG | 0.395020 | 3.1:-73726300 | MS.gene057127:CDS |
| GAACTTATAGGCCTTCTTTG+TGG | 0.395988 | 3.1:-73725637 | MS.gene057127:CDS |
| GGAGAACTGTAATAATTTGT+TGG | 0.397331 | 3.1:+73725992 | None:intergenic |
| ACATCACAGCAAAGGCTGTT+AGG | 0.397636 | 3.1:-73726572 | MS.gene057127:CDS |
| GTATGCATTTGGCTCTATCT+TGG | 0.398069 | 3.1:-73726196 | MS.gene057127:CDS |
| GTATCAAACCTGCCAACTTT+CGG | 0.403548 | 3.1:+73727195 | None:intergenic |
| GCCAACTTTCGGCTATCAAC+TGG | 0.406087 | 3.1:+73727206 | None:intergenic |
| TACTCCAGAATTCAATGGCT+TGG | 0.406106 | 3.1:+73726526 | None:intergenic |
| CCTCTGTCTCCAATCTGGTT+TGG | 0.406779 | 3.1:+73726230 | None:intergenic |
| TGAAAACAGAAAGCGGGAAT+TGG | 0.407494 | 3.1:-73727147 | MS.gene057127:CDS |
| TTTCTTCACAGTTCAATTGT+TGG | 0.411323 | 3.1:-73726042 | MS.gene057127:CDS |
| TGCAGCGAAGGCCCAGGTTA+AGG | 0.412867 | 3.1:-73727099 | MS.gene057127:CDS |
| GCAAGCAACTTTGGAGACTC+TGG | 0.414579 | 3.1:-73726916 | MS.gene057127:CDS |
| GAGCATAAGGAATCAAGATC+TGG | 0.417948 | 3.1:+73725011 | None:intergenic |
| GTGTAGTCGGCGACATATGC+AGG | 0.418380 | 3.1:-73725348 | MS.gene057127:CDS |
| GAGGAGGCCATGCTAGCTAT+TGG | 0.419964 | 3.1:-73725487 | MS.gene057127:CDS |
| ACAAGAGGTACTAATTTGTC+TGG | 0.420575 | 3.1:+73726162 | None:intergenic |
| CTTACGTACAGTTCCGTCAA+TGG | 0.421548 | 3.1:+73727319 | None:intergenic |
| ACATTAACTCTTTGAGAAAT+GGG | 0.422715 | 3.1:-73725087 | MS.gene057127:CDS |
| AATAGTGATCCTATCAGTTC+AGG | 0.424523 | 3.1:+73726972 | None:intergenic |
| AGCACGATTGATGGCCAACT+TGG | 0.424564 | 3.1:+73724685 | None:intergenic |
| GAGAACTGTAATAATTTGTT+GGG | 0.427273 | 3.1:+73725993 | None:intergenic |
| TGCACTCGTCCCTCTGCTGT+TGG | 0.428521 | 3.1:-73726403 | MS.gene057127:CDS |
| TGTATATGCTATCCAAGAAC+TGG | 0.432522 | 3.1:+73724978 | None:intergenic |
| TGATGAAGAGACTGATATCT+TGG | 0.432783 | 3.1:-73726496 | MS.gene057127:CDS |
| TCAATGGCTTGGAGAGCAAC+AGG | 0.436583 | 3.1:+73726537 | None:intergenic |
| ATGTCAGACTTGCTGCTGCC+AGG | 0.436780 | 3.1:-73726788 | MS.gene057127:CDS |
| CAGTATGCTGATCAGATAAT+GGG | 0.437742 | 3.1:-73725553 | MS.gene057127:CDS |
| TGGAGAATGTGGGGAGCATA+AGG | 0.441829 | 3.1:+73724998 | None:intergenic |
| AACAGCAGAGGGACGAGTGC+AGG | 0.444736 | 3.1:+73726405 | None:intergenic |
| AATCGTGCTATATCTGTTTG+AGG | 0.448881 | 3.1:-73724671 | None:intergenic |
| GAAGCAGCGACGTATGCATT+TGG | 0.449296 | 3.1:-73726207 | MS.gene057127:CDS |
| TCATGTCAAGCAAGCAACTT+TGG | 0.450868 | 3.1:-73726925 | MS.gene057127:CDS |
| GAAGCAAACATGCCTTAACC+TGG | 0.450881 | 3.1:+73727087 | None:intergenic |
| ACAGTCATTATTCAGAAGCT+AGG | 0.451708 | 3.1:-73725607 | MS.gene057127:CDS |
| TTGAATGCTCAATCCATTGA+CGG | 0.452532 | 3.1:-73727332 | MS.gene057127:CDS |
| GTCTTGATCAACAACCTCAT+GGG | 0.455712 | 3.1:+73726872 | None:intergenic |
| TGCATTTGGCTCTATCTTGG+AGG | 0.457960 | 3.1:-73726193 | MS.gene057127:CDS |
| GCTTGACATGAGCAGGAACT+TGG | 0.460430 | 3.1:+73726937 | None:intergenic |
| GATGGCCAACTTGGCCCATT+CGG | 0.460803 | 3.1:+73724694 | None:intergenic |
| TTGATGAATTCTTAAACCCT+TGG | 0.462813 | 3.1:+73725038 | None:intergenic |
| AATTGTACTCCAGAATTCAA+TGG | 0.464626 | 3.1:+73726521 | None:intergenic |
| AACCCTGGGCGAGAAAATAC+AGG | 0.464646 | 3.1:+73725920 | None:intergenic |
| CGCCCAGGGTTATGAGGATG+TGG | 0.470202 | 3.1:-73725908 | MS.gene057127:CDS |
| TCCTGAATTGAAAATACGTC+TGG | 0.474094 | 3.1:-73726670 | MS.gene057127:CDS |
| TTATATATGTCCTGGATGTA+AGG | 0.474321 | 3.1:+73726594 | None:intergenic |
| GAGATGTACGCCCACACATC+AGG | 0.474951 | 3.1:-73725133 | MS.gene057127:CDS |
| ACAAGAAGAGGATCAAGATC+TGG | 0.475193 | 3.1:-73726367 | MS.gene057127:CDS |
| GATACACTTGGAAGCAATGC+TGG | 0.475465 | 3.1:-73724800 | MS.gene057127:CDS |
| CTCTGTGGGTGACAGTGAGA+AGG | 0.475830 | 3.1:+73725839 | None:intergenic |
| AAACAGTGGCCTGAACTGAT+AGG | 0.477544 | 3.1:-73726981 | MS.gene057127:CDS |
| AGATAATGGGACTATTCATC+CGG | 0.478120 | 3.1:-73725540 | MS.gene057127:CDS |
| AAAATATTCCCTTACTGTGA+TGG | 0.478884 | 3.1:-73725313 | MS.gene057127:CDS |
| AAATATTCCCTTACTGTGAT+GGG | 0.479316 | 3.1:-73725312 | MS.gene057127:CDS |
| GTCATAATCCCATCACAGTA+AGG | 0.480569 | 3.1:+73725304 | None:intergenic |
| CGACATATGCAGGGCATTGG+AGG | 0.480820 | 3.1:-73725338 | MS.gene057127:CDS |
| CATGGCCTCCTCATGGGCAG+TGG | 0.481836 | 3.1:+73725498 | None:intergenic |
| GATTAAAGAATCTGCCGAAT+GGG | 0.485471 | 3.1:-73724708 | MS.gene057127:CDS |
| GCATTTGGCTCTATCTTGGA+GGG | 0.486868 | 3.1:-73726192 | MS.gene057127:CDS |
| CAGAGGGACGAGTGCAGGAA+GGG | 0.487738 | 3.1:+73726410 | None:intergenic |
| GAATATGTGGGTGATACCAC+TGG | 0.488697 | 3.1:-73726471 | MS.gene057127:CDS |
| CAACAGTTACGGCACAAACT+TGG | 0.489107 | 3.1:+73725371 | None:intergenic |
| GTCCCTAATGTTGCTGAGAA+AGG | 0.491608 | 3.1:-73725952 | MS.gene057127:CDS |
| CGGCGACATATGCAGGGCAT+TGG | 0.493884 | 3.1:-73725341 | MS.gene057127:CDS |
| AGAATATTACCAAACCAGAT+TGG | 0.501979 | 3.1:-73726239 | MS.gene057127:CDS |
| GTTGATAGCCGAAAGTTGGC+AGG | 0.503864 | 3.1:-73727203 | MS.gene057127:CDS |
| CTGTGATGTTATATATGTCC+TGG | 0.504029 | 3.1:+73726586 | None:intergenic |
| GGTCTTGATCAACAACCTCA+TGG | 0.504483 | 3.1:+73726871 | None:intergenic |
| TGGCACACCTATTATTAATG+AGG | 0.506178 | 3.1:-73726022 | MS.gene057127:CDS |
| GAGCACTGAGCATAAATGGT+AGG | 0.506623 | 3.1:+73726130 | None:intergenic |
| CCTCTCTTGTACTTGACGCT+CGG | 0.507603 | 3.1:-73727055 | MS.gene057127:CDS |
| GGTGATATAGCACTAGCTAT+AGG | 0.507802 | 3.1:-73725211 | MS.gene057127:CDS |
| GCCGACTACACCAACAGTTA+CGG | 0.508961 | 3.1:+73725360 | None:intergenic |
| GTTGCTTGCTTGACATGAGC+AGG | 0.509107 | 3.1:+73726930 | None:intergenic |
| GCATATTCTGGGATCTTCCA+AGG | 0.514404 | 3.1:-73725055 | MS.gene057127:CDS |
| ATCTGCCGAATGGGCCAAGT+TGG | 0.515537 | 3.1:-73724699 | MS.gene057127:CDS |
| AGCTAGCATGGCCTCCTCAT+GGG | 0.516971 | 3.1:+73725492 | None:intergenic |
| ACTTGTAATGCCTTTCATTG+AGG | 0.519790 | 3.1:-73726262 | MS.gene057127:CDS |
| CCACACATCAGGCTTTGACT+TGG | 0.521208 | 3.1:-73725122 | MS.gene057127:CDS |
| TGTCAGACTTGCTGCTGCCA+GGG | 0.521590 | 3.1:-73726787 | MS.gene057127:CDS |
| ATGGCAGGTGGTACATGCCT+TGG | 0.523405 | 3.1:-73726321 | MS.gene057127:CDS |
| AGCATGCTGAAGAAAGTCTT+CGG | 0.523420 | 3.1:-73727298 | MS.gene057127:CDS |
| GGATATTAGAGGCATATTCT+GGG | 0.524280 | 3.1:-73725066 | MS.gene057127:CDS |
| GTGTCTTTAACATGGTTGCT+TGG | 0.524596 | 3.1:+73726096 | None:intergenic |
| ACCAGTTGATAGCCGAAAGT+TGG | 0.526677 | 3.1:-73727207 | MS.gene057127:CDS |
| GTAATATTCTCCTCAATGAA+AGG | 0.527093 | 3.1:+73726252 | None:intergenic |
| TCTGTGGGTGACAGTGAGAA+GGG | 0.528574 | 3.1:+73725840 | None:intergenic |
| TAGCTAGCATGGCCTCCTCA+TGG | 0.530327 | 3.1:+73725491 | None:intergenic |
| ATCACCAATGCATGAAAACA+AGG | 0.531126 | 3.1:+73725228 | None:intergenic |
| TGATATCTTGGAAGAATATG+TGG | 0.534358 | 3.1:-73726484 | MS.gene057127:CDS |
| GAAAGAGAGACCAAGAAACC+AGG | 0.534523 | 3.1:+73727254 | None:intergenic |
| CAAGCAACTTTGGAGACTCT+GGG | 0.535824 | 3.1:-73726915 | MS.gene057127:CDS |
| AAAACAGCCATTGGTGTCGT+TGG | 0.535827 | 3.1:-73724833 | MS.gene057127:CDS |
| AGTAATGTTTCCAACAGCAG+AGG | 0.542094 | 3.1:+73726393 | None:intergenic |
| CAGTCATTATTCAGAAGCTA+GGG | 0.543317 | 3.1:-73725606 | MS.gene057127:CDS |
| AACATTACTCAAACAAGAAG+AGG | 0.546231 | 3.1:-73726379 | MS.gene057127:CDS |
| GTCATTAGACACTGCAGCGA+AGG | 0.546662 | 3.1:-73727111 | MS.gene057127:CDS |
| GGACATCCTTCATGCTCTGA+AGG | 0.549506 | 3.1:+73725971 | None:intergenic |
| GGCACACCTATTATTAATGA+GGG | 0.549827 | 3.1:-73726021 | MS.gene057127:CDS |
| ACACCACTGCTTGGACTTTG+GGG | 0.550181 | 3.1:-73726077 | MS.gene057127:CDS |
| TTCCCACATCCTCATAACCC+TGG | 0.550647 | 3.1:+73725905 | None:intergenic |
| ATGTTAAAGACACCACTGCT+TGG | 0.550791 | 3.1:-73726086 | MS.gene057127:CDS |
| CACATAATACATGGCCGCAA+TGG | 0.551428 | 3.1:+73726626 | None:intergenic |
| AGACACTGCAGCGAAGGCCC+AGG | 0.552156 | 3.1:-73727105 | MS.gene057127:CDS |
| GCCGTAACTGTTGGTGTAGT+CGG | 0.552927 | 3.1:-73725361 | MS.gene057127:CDS |
| ACTAGTTTCTGTCATCATGA+TGG | 0.555623 | 3.1:-73725719 | MS.gene057127:CDS |
| CTGTCAAGCACCCACAAAGA+AGG | 0.556847 | 3.1:+73725626 | None:intergenic |
| CTCCGTAGCATCCTCTCTGT+GGG | 0.557611 | 3.1:+73725825 | None:intergenic |
| CATTTGGCTCTATCTTGGAG+GGG | 0.558186 | 3.1:-73726191 | MS.gene057127:CDS |
| GAGGATCAAGATCTGGATGA+AGG | 0.560543 | 3.1:-73726360 | MS.gene057127:CDS |
| TATCCAAGAACTGGAGAATG+TGG | 0.561174 | 3.1:+73724987 | None:intergenic |
| AAGGGCTCCAATAGCTAGCA+TGG | 0.562861 | 3.1:+73725480 | None:intergenic |
| GAAGTTGGCTCCTTACATCC+AGG | 0.563506 | 3.1:-73726604 | MS.gene057127:CDS |
| TCCCACATCCTCATAACCCT+GGG | 0.563687 | 3.1:+73725906 | None:intergenic |
| AGCATAAGGAATCAAGATCT+GGG | 0.564981 | 3.1:+73725012 | None:intergenic |
| AGCGGGAATTGGTTCAGAGA+TGG | 0.567281 | 3.1:-73727136 | MS.gene057127:CDS |
| TTTCTTGGTCTCTCTTTCTG+GGG | 0.568371 | 3.1:-73727249 | MS.gene057127:CDS |
| CATAGCGATGGAAGTTACTC+AGG | 0.569430 | 3.1:-73727360 | None:intergenic |
| AATGTTGCTGAGAAAGGCTG+TGG | 0.571738 | 3.1:-73725946 | MS.gene057127:CDS |
| AGTTCTCCTTCAGAGCATGA+AGG | 0.572114 | 3.1:-73725977 | MS.gene057127:CDS |
| AGTTCAGGCCACTGTTTCTG+AGG | 0.572502 | 3.1:+73726987 | None:intergenic |
| GCAGAGGGACGAGTGCAGGA+AGG | 0.572612 | 3.1:+73726409 | None:intergenic |
| GAAACTTGTAAAATTCAGGC+AGG | 0.572839 | 3.1:+73725425 | None:intergenic |
| CAAGGATGAAAACAGAAAGC+GGG | 0.572936 | 3.1:-73727153 | MS.gene057127:CDS |
| GTTCTTGGATAGCATATACA+TGG | 0.572950 | 3.1:-73724975 | MS.gene057127:CDS |
| TGATTAAAGAATCTGCCGAA+TGG | 0.574297 | 3.1:-73724709 | MS.gene057127:CDS |
| CCAAACCAGATTGGAGACAG+AGG | 0.578424 | 3.1:-73726230 | MS.gene057127:CDS |
| CATATTCTGGGATCTTCCAA+GGG | 0.579806 | 3.1:-73725054 | MS.gene057127:CDS |
| TAATGCTCTCGAATTTGCGC+AGG | 0.579901 | 3.1:-73726757 | MS.gene057127:CDS |
| ACTCCGTAGCATCCTCTCTG+TGG | 0.580534 | 3.1:+73725824 | None:intergenic |
| CAAGTCAAAGCCTGATGTGT+GGG | 0.580869 | 3.1:+73725123 | None:intergenic |
| ATCCAAGAACTGGAGAATGT+GGG | 0.582057 | 3.1:+73724988 | None:intergenic |
| GGTACTAATTTGTCTGGAGA+AGG | 0.583117 | 3.1:+73726168 | None:intergenic |
| CAGGGCCTATCGCATAGGCA+AGG | 0.584847 | 3.1:+73725461 | None:intergenic |
| GGTACTCCTCAAAATTCTGA+AGG | 0.586729 | 3.1:+73725392 | None:intergenic |
| GGAGCCCTTGCCTATGCGAT+AGG | 0.588549 | 3.1:-73725466 | MS.gene057127:CDS |
| TGAATGTTTGGTCTCCATTG+CGG | 0.588682 | 3.1:-73726640 | MS.gene057127:CDS |
| AGCCAACTTCACATAATACA+TGG | 0.590438 | 3.1:+73726617 | None:intergenic |
| TCATAATCCCATCACAGTAA+GGG | 0.590523 | 3.1:+73725305 | None:intergenic |
| AGCACTGAGCATAAATGGTA+GGG | 0.592192 | 3.1:+73726131 | None:intergenic |
| AAGATCTGGATGAAGGTGCA+TGG | 0.593145 | 3.1:-73726353 | MS.gene057127:CDS |
| AAAATCAGGGCCTATCGCAT+AGG | 0.593832 | 3.1:+73725456 | None:intergenic |
| AGGGCCTATCGCATAGGCAA+GGG | 0.594941 | 3.1:+73725462 | None:intergenic |
| TTTAATCATATGATCATCTG+AGG | 0.597486 | 3.1:+73724724 | None:intergenic |
| GGCCATGTATTATGTGAAGT+TGG | 0.601747 | 3.1:-73726619 | MS.gene057127:CDS |
| ATTGTTATGAAAACAGCCAT+TGG | 0.603401 | 3.1:-73724842 | MS.gene057127:CDS |
| GAGAGCATTATACAATGCCC+TGG | 0.604361 | 3.1:+73726770 | None:intergenic |
| CCACTGCTTGGACTTTGGGG+CGG | 0.604774 | 3.1:-73726074 | MS.gene057127:CDS |
| CATTTCTACAAGCAAAGACC+CGG | 0.606986 | 3.1:+73725521 | None:intergenic |
| GCATGGAATATTGCAATGGC+AGG | 0.607121 | 3.1:-73726336 | MS.gene057127:CDS |
| CCGAGCGTCAAGTACAAGAG+AGG | 0.607157 | 3.1:+73727055 | None:intergenic |
| AAGCAGTGGTGTCTTTAACA+TGG | 0.611461 | 3.1:+73726088 | None:intergenic |
| GATAATGGGACTATTCATCC+GGG | 0.613080 | 3.1:-73725539 | MS.gene057127:CDS |
| CACCAATGCATGAAAACAAG+GGG | 0.613111 | 3.1:+73725230 | None:intergenic |
| CAAGTTTGTGCCGTAACTGT+TGG | 0.613695 | 3.1:-73725370 | MS.gene057127:CDS |
| TCACCAATGCATGAAAACAA+GGG | 0.614256 | 3.1:+73725229 | None:intergenic |
| GCAGGTATTTAGCAAAATCA+GGG | 0.614526 | 3.1:+73725443 | None:intergenic |
| CCAAGGATGAAAACAGAAAG+CGG | 0.615724 | 3.1:-73727154 | MS.gene057127:CDS |
| TATGCTCAGTGCTCTAGTGA+AGG | 0.618237 | 3.1:-73726121 | MS.gene057127:CDS |
| AAGCAAACATGCCTTAACCT+GGG | 0.618785 | 3.1:+73727088 | None:intergenic |
| AATATGTGGGTGATACCACT+GGG | 0.618894 | 3.1:-73726470 | MS.gene057127:CDS |
| CACCCACAGAGAGGATGCTA+CGG | 0.620015 | 3.1:-73725827 | MS.gene057127:CDS |
| TGCAAGAGAACATATTTGGT+AGG | 0.622823 | 3.1:+73725574 | None:intergenic |
| TAGAAATGCCACTGCCCATG+AGG | 0.623921 | 3.1:-73725506 | MS.gene057127:CDS |
| TCCAAGAACTGGAGAATGTG+GGG | 0.625954 | 3.1:+73724989 | None:intergenic |
| CCAAGTCAAAGCCTGATGTG+TGG | 0.626187 | 3.1:+73725122 | None:intergenic |
| CATATATAACATCACAGCAA+AGG | 0.628146 | 3.1:-73726580 | MS.gene057127:CDS |
| TAGATCTCCAACGACACCAA+TGG | 0.633027 | 3.1:+73724826 | None:intergenic |
| GAGAGGATGCTACGGAGTCA+CGG | 0.633129 | 3.1:-73725819 | MS.gene057127:CDS |
| GTAATGTTTCCAACAGCAGA+GGG | 0.633616 | 3.1:+73726394 | None:intergenic |
| GAGAGACCAAGAAACCAGGA+AGG | 0.634178 | 3.1:+73727258 | None:intergenic |
| GAAACTAGTTGCAACACCAA+AGG | 0.635429 | 3.1:+73725733 | None:intergenic |
| AAAGGCTGTTAGGAGTGATG+AGG | 0.635593 | 3.1:-73726562 | MS.gene057127:CDS |
| AAATGCCACTGCCCATGAGG+AGG | 0.637700 | 3.1:-73725503 | MS.gene057127:CDS |
| TCTTGATCAACAACCTCATG+GGG | 0.640057 | 3.1:+73726873 | None:intergenic |
| TGGAATATTGCAATGGCAGG+TGG | 0.641007 | 3.1:-73726333 | MS.gene057127:CDS |
| GGAGATCTAGCTGATACACT+TGG | 0.641148 | 3.1:-73724812 | MS.gene057127:CDS |
| TTGAGCTTCCTCAGAAACAG+TGG | 0.646805 | 3.1:-73726995 | MS.gene057127:CDS |
| TGTAGTCGGCGACATATGCA+GGG | 0.652462 | 3.1:-73725347 | MS.gene057127:CDS |
| GACTCTGGGGTATTTGTGTG+AGG | 0.657648 | 3.1:-73726901 | MS.gene057127:CDS |
| CAAACCAGATTGGAGACAGA+GGG | 0.659105 | 3.1:-73726229 | MS.gene057127:CDS |
| GCCCAGGGTTATGAGGATGT+GGG | 0.661982 | 3.1:-73725907 | MS.gene057127:CDS |
| TCAATGAAAGGCATTACAAG+TGG | 0.666073 | 3.1:+73726264 | None:intergenic |
| GATATCTTGGAAGAATATGT+GGG | 0.670018 | 3.1:-73726483 | MS.gene057127:CDS |
| ACCCTGGGCGAGAAAATACA+GGG | 0.671132 | 3.1:+73725921 | None:intergenic |
| CCGCCCCAAAGTCCAAGCAG+TGG | 0.671300 | 3.1:+73726074 | None:intergenic |
| GGTAGGGCGTGATTAACAAG+AGG | 0.685210 | 3.1:+73726147 | None:intergenic |
| ACCAATGCATGAAAACAAGG+GGG | 0.694702 | 3.1:+73725231 | None:intergenic |
| CCAATGCATGAAAACAAGGG+GGG | 0.695534 | 3.1:+73725232 | None:intergenic |
| AAGCAACTTTGGAGACTCTG+GGG | 0.702950 | 3.1:-73726914 | MS.gene057127:CDS |
| AGGTGCATGGAATATTGCAA+TGG | 0.707284 | 3.1:-73726340 | MS.gene057127:CDS |
| TAGTACGAGCAACTAAACCA+AGG | 0.708913 | 3.1:+73726304 | None:intergenic |
| TCTCACTGTCACCCACAGAG+AGG | 0.716309 | 3.1:-73725836 | MS.gene057127:CDS |
| CTTGATCAACAACCTCATGG+GGG | 0.733599 | 3.1:+73726874 | None:intergenic |
| AGGTATATCAGAGTCCCCAG+TGG | 0.773955 | 3.1:+73726455 | None:intergenic |
| ATATGTGGGTGATACCACTG+GGG | 0.840024 | 3.1:-73726469 | MS.gene057127:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGCTATGAAAATTAAAT+TGG | + | chr3.1:73727112-73727131 | None:intergenic | 15.0% |
| !! | TGCTTAATGAAATAAAAACA+AGG | + | chr3.1:73725594-73725613 | None:intergenic | 20.0% |
| !! | TTTGATACTTAAAAATGCAT+TGG | - | chr3.1:73724846-73724865 | MS.gene057127:CDS | 20.0% |
| !!! | CAGTAAGAATTTTATTTACT+TGG | + | chr3.1:73725179-73725198 | None:intergenic | 20.0% |
| ! | TCAAGAAACTTGTAAAATTC+AGG | + | chr3.1:73726608-73726627 | None:intergenic | 25.0% |
| ! | TGAACAATTTCCTGAAAAAA+GGG | + | chr3.1:73726164-73726183 | None:intergenic | 25.0% |
| ! | TTGAACAATTTCCTGAAAAA+AGG | + | chr3.1:73726165-73726184 | None:intergenic | 25.0% |
| ! | TTTAATCATATGATCATCTG+AGG | + | chr3.1:73727305-73727324 | None:intergenic | 25.0% |
| !! | ACATTAACTCTTTGAGAAAT+GGG | - | chr3.1:73726939-73726958 | MS.gene057127:CDS | 25.0% |
| !! | TACATTAACTCTTTGAGAAA+TGG | - | chr3.1:73726938-73726957 | MS.gene057127:CDS | 25.0% |
| !!! | GAGAACTGTAATAATTTGTT+GGG | + | chr3.1:73726036-73726055 | None:intergenic | 25.0% |
| AAAATATTCCCTTACTGTGA+TGG | - | chr3.1:73726713-73726732 | MS.gene057127:CDS | 30.0% | |
| AAATATTCCCTTACTGTGAT+GGG | - | chr3.1:73726714-73726733 | MS.gene057127:CDS | 30.0% | |
| AACATTACTCAAACAAGAAG+AGG | - | chr3.1:73725647-73725666 | MS.gene057127:CDS | 30.0% | |
| AATTGTACTCCAGAATTCAA+TGG | + | chr3.1:73725508-73725527 | None:intergenic | 30.0% | |
| AGAATATTACCAAACCAGAT+TGG | - | chr3.1:73725787-73725806 | MS.gene057127:CDS | 30.0% | |
| ATACTGCAAGAGAACATATT+TGG | + | chr3.1:73726459-73726478 | None:intergenic | 30.0% | |
| ATTGTTATGAAAACAGCCAT+TGG | - | chr3.1:73727184-73727203 | MS.gene057127:CDS | 30.0% | |
| CATATATAACATCACAGCAA+AGG | - | chr3.1:73725446-73725465 | MS.gene057127:CDS | 30.0% | |
| GAAAAACAGAGTGAACTTAT+AGG | - | chr3.1:73726377-73726396 | MS.gene057127:CDS | 30.0% | |
| GATATCTTGGAAGAATATGT+GGG | - | chr3.1:73725543-73725562 | MS.gene057127:CDS | 30.0% | |
| GCATTTCCCTCATTAATAAT+AGG | + | chr3.1:73726014-73726033 | None:intergenic | 30.0% | |
| GTAATATTCTCCTCAATGAA+AGG | + | chr3.1:73725777-73725796 | None:intergenic | 30.0% | |
| TGACAAAGACTGTTGAATTA+AGG | + | chr3.1:73727254-73727273 | None:intergenic | 30.0% | |
| TGATATCTTGGAAGAATATG+TGG | - | chr3.1:73725542-73725561 | MS.gene057127:CDS | 30.0% | |
| TTATATATGTCCTGGATGTA+AGG | + | chr3.1:73725435-73725454 | None:intergenic | 30.0% | |
| TTGATGAATTCTTAAACCCT+TGG | + | chr3.1:73726991-73727010 | None:intergenic | 30.0% | |
| TTTCTTCACAGTTCAATTGT+TGG | - | chr3.1:73725984-73726003 | MS.gene057127:CDS | 30.0% | |
| TTTGAGAAATGGGATATTAG+AGG | - | chr3.1:73726949-73726968 | MS.gene057127:CDS | 30.0% | |
| ! | GGAGAACTGTAATAATTTGT+TGG | + | chr3.1:73726037-73726056 | None:intergenic | 30.0% |
| !! | GGCTAATTTTAGCAATGATA+TGG | - | chr3.1:73725290-73725309 | MS.gene057127:CDS | 30.0% |
| AACAGATATAGCACGATTGA+TGG | + | chr3.1:73727353-73727372 | None:intergenic | 35.0% | |
| AACTTATAGGCCTTCTTTGT+GGG | - | chr3.1:73726390-73726409 | MS.gene057127:CDS | 35.0% | |
| AATAGTGATCCTATCAGTTC+AGG | + | chr3.1:73725057-73725076 | None:intergenic | 35.0% | |
| ACAGTCATTATTCAGAAGCT+AGG | - | chr3.1:73726419-73726438 | MS.gene057127:CDS | 35.0% | |
| ACTTGTAATGCCTTTCATTG+AGG | - | chr3.1:73725764-73725783 | MS.gene057127:CDS | 35.0% | |
| AGCATAAGGAATCAAGATCT+GGG | + | chr3.1:73727017-73727036 | None:intergenic | 35.0% | |
| AGCCAACTTCACATAATACA+TGG | + | chr3.1:73725412-73725431 | None:intergenic | 35.0% | |
| ATCACCAATGCATGAAAACA+AGG | + | chr3.1:73726801-73726820 | None:intergenic | 35.0% | |
| ATTCTTACTGCTGTAGTTCA+AGG | - | chr3.1:73725189-73725208 | MS.gene057127:CDS | 35.0% | |
| CAAGTTGTTGCTAAAATTGC+TGG | - | chr3.1:73725006-73725025 | MS.gene057127:CDS | 35.0% | |
| CAGTATGCTGATCAGATAAT+GGG | - | chr3.1:73726473-73726492 | MS.gene057127:CDS | 35.0% | |
| CAGTCATTATTCAGAAGCTA+GGG | - | chr3.1:73726420-73726439 | MS.gene057127:CDS | 35.0% | |
| CCTGAAAAAAGGGAGTTATA+GGG | + | chr3.1:73726154-73726173 | None:intergenic | 35.0% | |
| CTGAAAAAAGGGAGTTATAG+GGG | + | chr3.1:73726153-73726172 | None:intergenic | 35.0% | |
| CTGTGATGTTATATATGTCC+TGG | + | chr3.1:73725443-73725462 | None:intergenic | 35.0% | |
| GAAACTTGTAAAATTCAGGC+AGG | + | chr3.1:73726604-73726623 | None:intergenic | 35.0% | |
| GATTAAAGAATCTGCCGAAT+GGG | - | chr3.1:73727318-73727337 | MS.gene057127:CDS | 35.0% | |
| GCAGGTATTTAGCAAAATCA+GGG | + | chr3.1:73726586-73726605 | None:intergenic | 35.0% | |
| GGCACACCTATTATTAATGA+GGG | - | chr3.1:73726005-73726024 | MS.gene057127:CDS | 35.0% | |
| GTTCTTGGATAGCATATACA+TGG | - | chr3.1:73727051-73727070 | MS.gene057127:CDS | 35.0% | |
| TAAAAATGCATTGGATGCCA+AGG | - | chr3.1:73724855-73724874 | MS.gene057127:intron | 35.0% | |
| TCACCAATGCATGAAAACAA+GGG | + | chr3.1:73726800-73726819 | None:intergenic | 35.0% | |
| TCATAATCCCATCACAGTAA+GGG | + | chr3.1:73726724-73726743 | None:intergenic | 35.0% | |
| TCCTGAAAAAAGGGAGTTAT+AGG | + | chr3.1:73726155-73726174 | None:intergenic | 35.0% | |
| TCCTGAATTGAAAATACGTC+TGG | - | chr3.1:73725356-73725375 | MS.gene057127:CDS | 35.0% | |
| TGATGAAGAGACTGATATCT+TGG | - | chr3.1:73725530-73725549 | MS.gene057127:CDS | 35.0% | |
| TGATTAAAGAATCTGCCGAA+TGG | - | chr3.1:73727317-73727336 | MS.gene057127:CDS | 35.0% | |
| TGCAAGAGAACATATTTGGT+AGG | + | chr3.1:73726455-73726474 | None:intergenic | 35.0% | |
| TGGCACACCTATTATTAATG+AGG | - | chr3.1:73726004-73726023 | MS.gene057127:CDS | 35.0% | |
| TGTATATGCTATCCAAGAAC+TGG | + | chr3.1:73727051-73727070 | None:intergenic | 35.0% | |
| TTGAATGCTCAATCCATTGA+CGG | - | chr3.1:73724694-73724713 | MS.gene057127:CDS | 35.0% | |
| ! | ACTAGTTTCTGTCATCATGA+TGG | - | chr3.1:73726307-73726326 | MS.gene057127:CDS | 35.0% |
| ! | GATTGACCTTCAGAATTTTG+AGG | - | chr3.1:73726628-73726647 | MS.gene057127:CDS | 35.0% |
| ! | GGATATTAGAGGCATATTCT+GGG | - | chr3.1:73726960-73726979 | MS.gene057127:CDS | 35.0% |
| !! | ACAAGAGGTACTAATTTGTC+TGG | + | chr3.1:73725867-73725886 | None:intergenic | 35.0% |
| !! | AGATAATGGGACTATTCATC+CGG | - | chr3.1:73726486-73726505 | MS.gene057127:CDS | 35.0% |
| !! | TCAATGAAAGGCATTACAAG+TGG | + | chr3.1:73725765-73725784 | None:intergenic | 35.0% |
| !!! | CATTGACTTTTCTTACTGCA+GGG | - | chr3.1:73727156-73727175 | MS.gene057127:CDS | 35.0% |
| !!! | TCATTGACTTTTCTTACTGC+AGG | - | chr3.1:73727155-73727174 | MS.gene057127:CDS | 35.0% |
| AACAGATGAAACAGCTCCTT+TGG | - | chr3.1:73726277-73726296 | MS.gene057127:CDS | 40.0% | |
| AAGCAAACATGCCTTAACCT+GGG | + | chr3.1:73724941-73724960 | None:intergenic | 40.0% | |
| AAGCAGTGGTGTCTTTAACA+TGG | + | chr3.1:73725941-73725960 | None:intergenic | 40.0% | |
| AATATGTGGGTGATACCACT+GGG | - | chr3.1:73725556-73725575 | MS.gene057127:CDS | 40.0% | |
| ACAAGAAGAGGATCAAGATC+TGG | - | chr3.1:73725659-73725678 | MS.gene057127:CDS | 40.0% | |
| ACCAATGCATGAAAACAAGG+GGG | + | chr3.1:73726798-73726817 | None:intergenic | 40.0% | |
| AGAAAGTCTTCGGCAATTTC+AGG | - | chr3.1:73724738-73724757 | MS.gene057127:CDS | 40.0% | |
| AGCATGCTGAAGAAAGTCTT+CGG | - | chr3.1:73724728-73724747 | MS.gene057127:CDS | 40.0% | |
| AGCCTTTCTCAGCAACATTA+GGG | + | chr3.1:73726079-73726098 | None:intergenic | 40.0% | |
| AGGTGCATGGAATATTGCAA+TGG | - | chr3.1:73725686-73725705 | MS.gene057127:CDS | 40.0% | |
| AGTAATGTTTCCAACAGCAG+AGG | + | chr3.1:73725636-73725655 | None:intergenic | 40.0% | |
| ATCCAAGAACTGGAGAATGT+GGG | + | chr3.1:73727041-73727060 | None:intergenic | 40.0% | |
| ATGTTAAAGACACCACTGCT+TGG | - | chr3.1:73725940-73725959 | MS.gene057127:CDS | 40.0% | |
| CAAGGATGAAAACAGAAAGC+GGG | - | chr3.1:73724873-73724892 | MS.gene057127:intron | 40.0% | |
| CACCAATGCATGAAAACAAG+GGG | + | chr3.1:73726799-73726818 | None:intergenic | 40.0% | |
| CATTTCTACAAGCAAAGACC+CGG | + | chr3.1:73726508-73726527 | None:intergenic | 40.0% | |
| CCAAGGATGAAAACAGAAAG+CGG | - | chr3.1:73724872-73724891 | MS.gene057127:intron | 40.0% | |
| GAAACTAGTTGCAACACCAA+AGG | + | chr3.1:73726296-73726315 | None:intergenic | 40.0% | |
| GAACTTATAGGCCTTCTTTG+TGG | - | chr3.1:73726389-73726408 | MS.gene057127:CDS | 40.0% | |
| GAGCATAAGGAATCAAGATC+TGG | + | chr3.1:73727018-73727037 | None:intergenic | 40.0% | |
| GCAGTATGCTGATCAGATAA+TGG | - | chr3.1:73726472-73726491 | MS.gene057127:CDS | 40.0% | |
| GGCAGGTATTTAGCAAAATC+AGG | + | chr3.1:73726587-73726606 | None:intergenic | 40.0% | |
| GGCCATGTATTATGTGAAGT+TGG | - | chr3.1:73725407-73725426 | MS.gene057127:CDS | 40.0% | |
| GGTACTCCTCAAAATTCTGA+AGG | + | chr3.1:73726637-73726656 | None:intergenic | 40.0% | |
| GGTGATATAGCACTAGCTAT+AGG | - | chr3.1:73726815-73726834 | MS.gene057127:CDS | 40.0% | |
| GTAATGTTTCCAACAGCAGA+GGG | + | chr3.1:73725635-73725654 | None:intergenic | 40.0% | |
| GTATCAAACCTGCCAACTTT+CGG | + | chr3.1:73724834-73724853 | None:intergenic | 40.0% | |
| GTCATAATCCCATCACAGTA+AGG | + | chr3.1:73726725-73726744 | None:intergenic | 40.0% | |
| GTCTTGATCAACAACCTCAT+GGG | + | chr3.1:73725157-73725176 | None:intergenic | 40.0% | |
| GTGTCTTTAACATGGTTGCT+TGG | + | chr3.1:73725933-73725952 | None:intergenic | 40.0% | |
| GTTTCTTGGTCTCTCTTTCT+GGG | - | chr3.1:73724776-73724795 | MS.gene057127:CDS | 40.0% | |
| TACTCCAGAATTCAATGGCT+TGG | + | chr3.1:73725503-73725522 | None:intergenic | 40.0% | |
| TAGTACGAGCAACTAAACCA+AGG | + | chr3.1:73725725-73725744 | None:intergenic | 40.0% | |
| TATCCAAGAACTGGAGAATG+TGG | + | chr3.1:73727042-73727061 | None:intergenic | 40.0% | |
| TCATGTCAAGCAAGCAACTT+TGG | - | chr3.1:73725101-73725120 | MS.gene057127:CDS | 40.0% | |
| TCTTGATCAACAACCTCATG+GGG | + | chr3.1:73725156-73725175 | None:intergenic | 40.0% | |
| TGAAAACAGAAAGCGGGAAT+TGG | - | chr3.1:73724879-73724898 | MS.gene057127:intron | 40.0% | |
| TGAATGTTTGGTCTCCATTG+CGG | - | chr3.1:73725386-73725405 | MS.gene057127:CDS | 40.0% | |
| TTTCTTGGTCTCTCTTTCTG+GGG | - | chr3.1:73724777-73724796 | MS.gene057127:CDS | 40.0% | |
| ! | AGCACTGAGCATAAATGGTA+GGG | + | chr3.1:73725898-73725917 | None:intergenic | 40.0% |
| ! | GCCAGACGTATTTTCAATTC+AGG | + | chr3.1:73725360-73725379 | None:intergenic | 40.0% |
| ! | GGGATATTAGAGGCATATTC+TGG | - | chr3.1:73726959-73726978 | MS.gene057127:CDS | 40.0% |
| ! | GGTACTAATTTGTCTGGAGA+AGG | + | chr3.1:73725861-73725880 | None:intergenic | 40.0% |
| ! | TCTGGCAGCTTTTGAATGTT+TGG | - | chr3.1:73725374-73725393 | MS.gene057127:CDS | 40.0% |
| !! | ACTAGAGCACTGAGCATAAA+TGG | + | chr3.1:73725903-73725922 | None:intergenic | 40.0% |
| !! | CATATTCTGGGATCTTCCAA+GGG | - | chr3.1:73726972-73726991 | MS.gene057127:CDS | 40.0% |
| !! | GATAATGGGACTATTCATCC+GGG | - | chr3.1:73726487-73726506 | MS.gene057127:CDS | 40.0% |
| !! | GTATGCATTTGGCTCTATCT+TGG | - | chr3.1:73725830-73725849 | MS.gene057127:CDS | 40.0% |
| !!! | CCCTATAACTCCCTTTTTTC+AGG | - | chr3.1:73726151-73726170 | MS.gene057127:CDS | 40.0% |
| AAAATCAGGGCCTATCGCAT+AGG | + | chr3.1:73726573-73726592 | None:intergenic | 45.0% | |
| AAACAGTGGCCTGAACTGAT+AGG | - | chr3.1:73725045-73725064 | MS.gene057127:CDS | 45.0% | |
| AAAGGCTGTTAGGAGTGATG+AGG | - | chr3.1:73725464-73725483 | MS.gene057127:CDS | 45.0% | |
| AATGTTGCTGAGAAAGGCTG+TGG | - | chr3.1:73726080-73726099 | MS.gene057127:CDS | 45.0% | |
| ACATCACAGCAAAGGCTGTT+AGG | - | chr3.1:73725454-73725473 | MS.gene057127:CDS | 45.0% | |
| AGTTCTCCTTCAGAGCATGA+AGG | - | chr3.1:73726049-73726068 | MS.gene057127:CDS | 45.0% | |
| ATATGTGGGTGATACCACTG+GGG | - | chr3.1:73725557-73725576 | MS.gene057127:CDS | 45.0% | |
| CAAACCAGATTGGAGACAGA+GGG | - | chr3.1:73725797-73725816 | MS.gene057127:CDS | 45.0% | |
| CAACAGTTACGGCACAAACT+TGG | + | chr3.1:73726658-73726677 | None:intergenic | 45.0% | |
| CAAGTCAAAGCCTGATGTGT+GGG | + | chr3.1:73726906-73726925 | None:intergenic | 45.0% | |
| CAAGTTTGTGCCGTAACTGT+TGG | - | chr3.1:73726656-73726675 | MS.gene057127:CDS | 45.0% | |
| CACATAATACATGGCCGCAA+TGG | + | chr3.1:73725403-73725422 | None:intergenic | 45.0% | |
| CAGCCTTTCTCAGCAACATT+AGG | + | chr3.1:73726080-73726099 | None:intergenic | 45.0% | |
| CCAATGCATGAAAACAAGGG+GGG | + | chr3.1:73726797-73726816 | None:intergenic | 45.0% | |
| CTCTCCAAGCCATTGAATTC+TGG | - | chr3.1:73725496-73725515 | MS.gene057127:CDS | 45.0% | |
| CTTACGTACAGTTCCGTCAA+TGG | + | chr3.1:73724710-73724729 | None:intergenic | 45.0% | |
| CTTGATCAACAACCTCATGG+GGG | + | chr3.1:73725155-73725174 | None:intergenic | 45.0% | |
| GAAAGAGAGACCAAGAAACC+AGG | + | chr3.1:73724775-73724794 | None:intergenic | 45.0% | |
| GAAGCAAACATGCCTTAACC+TGG | + | chr3.1:73724942-73724961 | None:intergenic | 45.0% | |
| GAATATGTGGGTGATACCAC+TGG | - | chr3.1:73725555-73725574 | MS.gene057127:CDS | 45.0% | |
| GAGGATCAAGATCTGGATGA+AGG | - | chr3.1:73725666-73725685 | MS.gene057127:CDS | 45.0% | |
| GATACACTTGGAAGCAATGC+TGG | - | chr3.1:73727226-73727245 | MS.gene057127:CDS | 45.0% | |
| GCAAAACCTTCCTGGTTTCT+TGG | - | chr3.1:73724762-73724781 | MS.gene057127:CDS | 45.0% | |
| GCATGGAATATTGCAATGGC+AGG | - | chr3.1:73725690-73725709 | MS.gene057127:CDS | 45.0% | |
| GGAGATCTAGCTGATACACT+TGG | - | chr3.1:73727214-73727233 | MS.gene057127:CDS | 45.0% | |
| GGTCTTGATCAACAACCTCA+TGG | + | chr3.1:73725158-73725177 | None:intergenic | 45.0% | |
| GGTTTAGTTGCTCGTACTAC+TGG | - | chr3.1:73725726-73725745 | MS.gene057127:CDS | 45.0% | |
| GGTTTCTTGGTCTCTCTTTC+TGG | - | chr3.1:73724775-73724794 | MS.gene057127:CDS | 45.0% | |
| GTCCCTAATGTTGCTGAGAA+AGG | - | chr3.1:73726074-73726093 | MS.gene057127:CDS | 45.0% | |
| TAATGCTCTCGAATTTGCGC+AGG | - | chr3.1:73725269-73725288 | MS.gene057127:CDS | 45.0% | |
| TAGATCTCCAACGACACCAA+TGG | + | chr3.1:73727203-73727222 | None:intergenic | 45.0% | |
| TATGCTCAGTGCTCTAGTGA+AGG | - | chr3.1:73725905-73725924 | MS.gene057127:CDS | 45.0% | |
| TCCAAGAACTGGAGAATGTG+GGG | + | chr3.1:73727040-73727059 | None:intergenic | 45.0% | |
| TGGAATATTGCAATGGCAGG+TGG | - | chr3.1:73725693-73725712 | MS.gene057127:CDS | 45.0% | |
| TTGAGCTTCCTCAGAAACAG+TGG | - | chr3.1:73725031-73725050 | MS.gene057127:CDS | 45.0% | |
| TTTCAGGAGCAAAACCTTCC+TGG | - | chr3.1:73724754-73724773 | MS.gene057127:CDS | 45.0% | |
| ! | AAGATCTGGATGAAGGTGCA+TGG | - | chr3.1:73725673-73725692 | MS.gene057127:CDS | 45.0% |
| ! | AAGCAACTTTGGAGACTCTG+GGG | - | chr3.1:73725112-73725131 | MS.gene057127:CDS | 45.0% |
| ! | CAAGCAACTTTGGAGACTCT+GGG | - | chr3.1:73725111-73725130 | MS.gene057127:CDS | 45.0% |
| ! | CCGCTTTCTGTTTTCATCCT+TGG | + | chr3.1:73724875-73724894 | None:intergenic | 45.0% |
| !! | AAAACAGCCATTGGTGTCGT+TGG | - | chr3.1:73727193-73727212 | MS.gene057127:CDS | 45.0% |
| !! | ACCAGTTGATAGCCGAAAGT+TGG | - | chr3.1:73724819-73724838 | MS.gene057127:CDS | 45.0% |
| !! | CATTTGGCTCTATCTTGGAG+GGG | - | chr3.1:73725835-73725854 | MS.gene057127:CDS | 45.0% |
| !! | GAGAGCATTATACAATGCCC+TGG | + | chr3.1:73725259-73725278 | None:intergenic | 45.0% |
| !! | GAGCACTGAGCATAAATGGT+AGG | + | chr3.1:73725899-73725918 | None:intergenic | 45.0% |
| !! | GCATATTCTGGGATCTTCCA+AGG | - | chr3.1:73726971-73726990 | MS.gene057127:CDS | 45.0% |
| !! | GCATTTGGCTCTATCTTGGA+GGG | - | chr3.1:73725834-73725853 | MS.gene057127:CDS | 45.0% |
| !! | TGCATTTGGCTCTATCTTGG+AGG | - | chr3.1:73725833-73725852 | MS.gene057127:CDS | 45.0% |
| AACCCTGGGCGAGAAAATAC+AGG | + | chr3.1:73726109-73726128 | None:intergenic | 50.0% | |
| AAGGGCTCCAATAGCTAGCA+TGG | + | chr3.1:73726549-73726568 | None:intergenic | 50.0% | |
| ACACCACTGCTTGGACTTTG+GGG | - | chr3.1:73725949-73725968 | MS.gene057127:CDS | 50.0% | |
| ACCCTGGGCGAGAAAATACA+GGG | + | chr3.1:73726108-73726127 | None:intergenic | 50.0% | |
| AGACACCACTGCTTGGACTT+TGG | - | chr3.1:73725947-73725966 | MS.gene057127:CDS | 50.0% | |
| AGGTATATCAGAGTCCCCAG+TGG | + | chr3.1:73725574-73725593 | None:intergenic | 50.0% | |
| CCAAACCAGATTGGAGACAG+AGG | - | chr3.1:73725796-73725815 | MS.gene057127:CDS | 50.0% | |
| CCAAGTCAAAGCCTGATGTG+TGG | + | chr3.1:73726907-73726926 | None:intergenic | 50.0% | |
| CCTCTCTTGTACTTGACGCT+CGG | - | chr3.1:73724971-73724990 | MS.gene057127:CDS | 50.0% | |
| CCTCTGTCTCCAATCTGGTT+TGG | + | chr3.1:73725799-73725818 | None:intergenic | 50.0% | |
| CTGTCAAGCACCCACAAAGA+AGG | + | chr3.1:73726403-73726422 | None:intergenic | 50.0% | |
| GAAGCAGCGACGTATGCATT+TGG | - | chr3.1:73725819-73725838 | MS.gene057127:CDS | 50.0% | |
| GACACCACTGCTTGGACTTT+GGG | - | chr3.1:73725948-73725967 | MS.gene057127:CDS | 50.0% | |
| GAGAGACCAAGAAACCAGGA+AGG | + | chr3.1:73724771-73724790 | None:intergenic | 50.0% | |
| GCCAACTTTCGGCTATCAAC+TGG | + | chr3.1:73724823-73724842 | None:intergenic | 50.0% | |
| GCCGACTACACCAACAGTTA+CGG | + | chr3.1:73726669-73726688 | None:intergenic | 50.0% | |
| GCCGTAACTGTTGGTGTAGT+CGG | - | chr3.1:73726665-73726684 | MS.gene057127:CDS | 50.0% | |
| GCTTGACATGAGCAGGAACT+TGG | + | chr3.1:73725092-73725111 | None:intergenic | 50.0% | |
| GGACATCCTTCATGCTCTGA+AGG | + | chr3.1:73726058-73726077 | None:intergenic | 50.0% | |
| GGTAGGGCGTGATTAACAAG+AGG | + | chr3.1:73725882-73725901 | None:intergenic | 50.0% | |
| GTCATTAGACACTGCAGCGA+AGG | - | chr3.1:73724915-73724934 | MS.gene057127:intron | 50.0% | |
| GTTGCTTGCTTGACATGAGC+AGG | + | chr3.1:73725099-73725118 | None:intergenic | 50.0% | |
| TAGAAATGCCACTGCCCATG+AGG | - | chr3.1:73726520-73726539 | MS.gene057127:CDS | 50.0% | |
| TCCCACATCCTCATAACCCT+GGG | + | chr3.1:73726123-73726142 | None:intergenic | 50.0% | |
| TCCCCACATTCTCCAGTTCT+TGG | - | chr3.1:73727036-73727055 | MS.gene057127:CDS | 50.0% | |
| TCTGTGGGTGACAGTGAGAA+GGG | + | chr3.1:73726189-73726208 | None:intergenic | 50.0% | |
| TGTAGTCGGCGACATATGCA+GGG | - | chr3.1:73726679-73726698 | MS.gene057127:CDS | 50.0% | |
| TTCCCACATCCTCATAACCC+TGG | + | chr3.1:73726124-73726143 | None:intergenic | 50.0% | |
| ! | AGCACGATTGATGGCCAACT+TGG | + | chr3.1:73727344-73727363 | None:intergenic | 50.0% |
| ! | AGCGGGAATTGGTTCAGAGA+TGG | - | chr3.1:73724890-73724909 | MS.gene057127:intron | 50.0% |
| ! | CCACACATCAGGCTTTGACT+TGG | - | chr3.1:73726904-73726923 | MS.gene057127:CDS | 50.0% |
| ! | GAAGTTGGCTCCTTACATCC+AGG | - | chr3.1:73725422-73725441 | MS.gene057127:CDS | 50.0% |
| ! | GCAAGCAACTTTGGAGACTC+TGG | - | chr3.1:73725110-73725129 | MS.gene057127:CDS | 50.0% |
| ! | TCAATGGCTTGGAGAGCAAC+AGG | + | chr3.1:73725492-73725511 | None:intergenic | 50.0% |
| ! | TGGAGAATGTGGGGAGCATA+AGG | + | chr3.1:73727031-73727050 | None:intergenic | 50.0% |
| ! | TTTTCTCGCCCAGGGTTATG+AGG | - | chr3.1:73726112-73726131 | MS.gene057127:CDS | 50.0% |
| !! | AGTTCAGGCCACTGTTTCTG+AGG | + | chr3.1:73725042-73725061 | None:intergenic | 50.0% |
| !! | GACTCTGGGGTATTTGTGTG+AGG | - | chr3.1:73725125-73725144 | MS.gene057127:CDS | 50.0% |
| !! | GTTGATAGCCGAAAGTTGGC+AGG | - | chr3.1:73724823-73724842 | MS.gene057127:CDS | 50.0% |
| !!! | CCCCCCTTGTTTTCATGCAT+TGG | - | chr3.1:73726794-73726813 | MS.gene057127:CDS | 50.0% |
| AAATGCCACTGCCCATGAGG+AGG | - | chr3.1:73726523-73726542 | MS.gene057127:CDS | 55.0% | |
| ACAAGGGGGGCTTCACAGAA+CGG | + | chr3.1:73726784-73726803 | None:intergenic | 55.0% | |
| ACTCCGTAGCATCCTCTCTG+TGG | + | chr3.1:73726205-73726224 | None:intergenic | 55.0% | |
| AGCTAGCATGGCCTCCTCAT+GGG | + | chr3.1:73726537-73726556 | None:intergenic | 55.0% | |
| AGGGCCTATCGCATAGGCAA+GGG | + | chr3.1:73726567-73726586 | None:intergenic | 55.0% | |
| ATCTGCCGAATGGGCCAAGT+TGG | - | chr3.1:73727327-73727346 | MS.gene057127:CDS | 55.0% | |
| ATGGCAGGTGGTACATGCCT+TGG | - | chr3.1:73725705-73725724 | MS.gene057127:CDS | 55.0% | |
| CACCCACAGAGAGGATGCTA+CGG | - | chr3.1:73726199-73726218 | MS.gene057127:CDS | 55.0% | |
| CCGAGCGTCAAGTACAAGAG+AGG | + | chr3.1:73724974-73724993 | None:intergenic | 55.0% | |
| CTCCGTAGCATCCTCTCTGT+GGG | + | chr3.1:73726204-73726223 | None:intergenic | 55.0% | |
| CTCTGTGGGTGACAGTGAGA+AGG | + | chr3.1:73726190-73726209 | None:intergenic | 55.0% | |
| GAGAGGATGCTACGGAGTCA+CGG | - | chr3.1:73726207-73726226 | MS.gene057127:CDS | 55.0% | |
| GAGATGTACGCCCACACATC+AGG | - | chr3.1:73726893-73726912 | MS.gene057127:CDS | 55.0% | |
| GAGGAGGCCATGCTAGCTAT+TGG | - | chr3.1:73726539-73726558 | MS.gene057127:CDS | 55.0% | |
| GATGGCCAACTTGGCCCATT+CGG | + | chr3.1:73727335-73727354 | None:intergenic | 55.0% | |
| GCCCAGGGTTATGAGGATGT+GGG | - | chr3.1:73726119-73726138 | MS.gene057127:CDS | 55.0% | |
| GCTTCCCTCTGTCTCCAATC+TGG | + | chr3.1:73725804-73725823 | None:intergenic | 55.0% | |
| GTGTAGTCGGCGACATATGC+AGG | - | chr3.1:73726678-73726697 | MS.gene057127:CDS | 55.0% | |
| TAGCTAGCATGGCCTCCTCA+TGG | + | chr3.1:73726538-73726557 | None:intergenic | 55.0% | |
| TCTCACTGTCACCCACAGAG+AGG | - | chr3.1:73726190-73726209 | MS.gene057127:CDS | 55.0% | |
| ! | AGCCCTGTATTTTCTCGCCC+AGG | - | chr3.1:73726103-73726122 | MS.gene057127:CDS | 55.0% |
| ! | GCCCTGTATTTTCTCGCCCA+GGG | - | chr3.1:73726104-73726123 | MS.gene057127:CDS | 55.0% |
| !! | ATGTCAGACTTGCTGCTGCC+AGG | - | chr3.1:73725238-73725257 | MS.gene057127:CDS | 55.0% |
| !! | CGACATATGCAGGGCATTGG+AGG | - | chr3.1:73726688-73726707 | MS.gene057127:CDS | 55.0% |
| !! | TGTCAGACTTGCTGCTGCCA+GGG | - | chr3.1:73725239-73725258 | MS.gene057127:CDS | 55.0% |
| AACAGCAGAGGGACGAGTGC+AGG | + | chr3.1:73725624-73725643 | None:intergenic | 60.0% | |
| CAGAGGGACGAGTGCAGGAA+GGG | + | chr3.1:73725619-73725638 | None:intergenic | 60.0% | |
| CAGGGCCTATCGCATAGGCA+AGG | + | chr3.1:73726568-73726587 | None:intergenic | 60.0% | |
| CGCCCAGGGTTATGAGGATG+TGG | - | chr3.1:73726118-73726137 | MS.gene057127:CDS | 60.0% | |
| CGGCGACATATGCAGGGCAT+TGG | - | chr3.1:73726685-73726704 | MS.gene057127:CDS | 60.0% | |
| GGAGCCCTTGCCTATGCGAT+AGG | - | chr3.1:73726560-73726579 | MS.gene057127:CDS | 60.0% | |
| GTGTGAGGAAGTCCCCCATG+AGG | - | chr3.1:73725140-73725159 | MS.gene057127:CDS | 60.0% | |
| TGCACTCGTCCCTCTGCTGT+TGG | - | chr3.1:73725623-73725642 | MS.gene057127:CDS | 60.0% | |
| TGCAGCGAAGGCCCAGGTTA+AGG | - | chr3.1:73724927-73724946 | MS.gene057127:intron | 60.0% | |
| ! | CCACTGCTTGGACTTTGGGG+CGG | - | chr3.1:73725952-73725971 | MS.gene057127:CDS | 60.0% |
| AGACACTGCAGCGAAGGCCC+AGG | - | chr3.1:73724921-73724940 | MS.gene057127:intron | 65.0% | |
| CATGGCCTCCTCATGGGCAG+TGG | + | chr3.1:73726531-73726550 | None:intergenic | 65.0% | |
| CCGCCCCAAAGTCCAAGCAG+TGG | + | chr3.1:73725955-73725974 | None:intergenic | 65.0% | |
| GCAGAGGGACGAGTGCAGGA+AGG | + | chr3.1:73725620-73725639 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73724673 | 73727375 | 73724673 | ID=MS.gene057127 |
| chr3.1 | mRNA | 73724673 | 73727375 | 73724673 | ID=MS.gene057127.t1;Parent=MS.gene057127 |
| chr3.1 | exon | 73724965 | 73727375 | 73724965 | ID=MS.gene057127.t1.exon1;Parent=MS.gene057127.t1 |
| chr3.1 | CDS | 73724965 | 73727375 | 73724965 | ID=cds.MS.gene057127.t1;Parent=MS.gene057127.t1 |
| chr3.1 | exon | 73724673 | 73724871 | 73724673 | ID=MS.gene057127.t1.exon2;Parent=MS.gene057127.t1 |
| chr3.1 | CDS | 73724673 | 73724871 | 73724673 | ID=cds.MS.gene057127.t1;Parent=MS.gene057127.t1 |
| Gene Sequence |
| Protein sequence |
