Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37692.t1 | XP_013469744.1 | 96.8 | 344 | 7 | 1 | 1 | 344 | 1 | 340 | 1.70E-189 | 671.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37692.t1 | Q3L181 | 65.8 | 339 | 112 | 1 | 5 | 343 | 1 | 335 | 1.3e-132 | 474.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37692.t1 | A0A072VPP5 | 96.8 | 344 | 7 | 1 | 1 | 344 | 1 | 340 | 1.2e-189 | 671.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050589 | MS.gene37692 | 0.8051 | 1.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37692.t1 | MTR_1g102750 | 96.802 | 344 | 7 | 1 | 1 | 344 | 1 | 340 | 0.0 | 684 |
| MS.gene37692.t1 | MTR_1g102750 | 96.540 | 289 | 6 | 1 | 1 | 289 | 1 | 285 | 0.0 | 573 |
| MS.gene37692.t1 | MTR_7g114980 | 64.058 | 345 | 117 | 2 | 3 | 344 | 9 | 349 | 1.43e-168 | 473 |
| MS.gene37692.t1 | MTR_7g114970 | 61.516 | 343 | 126 | 3 | 3 | 344 | 5 | 342 | 4.79e-163 | 459 |
| MS.gene37692.t1 | MTR_7g114990 | 62.059 | 340 | 122 | 3 | 5 | 344 | 13 | 345 | 1.60e-161 | 455 |
| MS.gene37692.t1 | MTR_7g115010 | 59.649 | 342 | 116 | 3 | 5 | 344 | 9 | 330 | 5.44e-152 | 431 |
| MS.gene37692.t1 | MTR_7g114980 | 64.931 | 288 | 94 | 2 | 3 | 287 | 9 | 292 | 1.67e-140 | 400 |
| MS.gene37692.t1 | MTR_7g114970 | 62.937 | 286 | 100 | 3 | 3 | 287 | 5 | 285 | 7.23e-138 | 393 |
| MS.gene37692.t1 | MTR_7g114970 | 62.807 | 285 | 100 | 3 | 3 | 286 | 5 | 284 | 7.40e-137 | 390 |
| MS.gene37692.t1 | MTR_7g021850 | 57.059 | 340 | 134 | 6 | 5 | 343 | 4 | 332 | 8.63e-134 | 385 |
| MS.gene37692.t1 | MTR_7g021680 | 56.471 | 340 | 136 | 7 | 5 | 343 | 4 | 332 | 7.12e-130 | 375 |
| MS.gene37692.t1 | MTR_7g021820 | 56.471 | 340 | 136 | 7 | 5 | 343 | 4 | 332 | 7.12e-130 | 375 |
| MS.gene37692.t1 | MTR_7g114970 | 64.898 | 245 | 81 | 2 | 101 | 344 | 8 | 248 | 1.05e-119 | 345 |
| MS.gene37692.t1 | MTR_7g114970 | 64.467 | 197 | 69 | 1 | 3 | 199 | 5 | 200 | 4.68e-95 | 281 |
| MS.gene37692.t1 | MTR_7g114970 | 62.745 | 204 | 71 | 2 | 142 | 344 | 1 | 200 | 3.52e-92 | 274 |
| MS.gene37692.t1 | MTR_1g102740 | 86.111 | 108 | 15 | 0 | 237 | 344 | 1 | 108 | 1.90e-62 | 194 |
| MS.gene37692.t1 | MTR_7g021825 | 59.333 | 150 | 56 | 2 | 161 | 309 | 15 | 160 | 7.56e-61 | 192 |
| MS.gene37692.t1 | MTR_7g021670 | 54.615 | 130 | 56 | 3 | 5 | 134 | 4 | 130 | 1.17e-37 | 135 |
| MS.gene37692.t1 | MTR_7g021670 | 52.381 | 105 | 46 | 2 | 239 | 343 | 146 | 246 | 2.35e-32 | 121 |
| MS.gene37692.t1 | MTR_7g067855 | 40.426 | 141 | 49 | 2 | 239 | 344 | 15 | 155 | 1.31e-29 | 111 |
| MS.gene37692.t1 | MTR_1g047250 | 29.819 | 332 | 188 | 11 | 10 | 317 | 6 | 316 | 3.27e-28 | 112 |
| MS.gene37692.t1 | MTR_3g449790 | 28.097 | 331 | 195 | 12 | 7 | 313 | 37 | 348 | 3.76e-24 | 102 |
| MS.gene37692.t1 | MTR_3g449790 | 27.795 | 331 | 190 | 12 | 7 | 313 | 37 | 342 | 6.98e-23 | 98.2 |
| MS.gene37692.t1 | MTR_3g092140 | 27.095 | 358 | 209 | 16 | 4 | 336 | 35 | 365 | 5.84e-22 | 97.1 |
| MS.gene37692.t1 | MTR_4g092750 | 27.925 | 265 | 164 | 9 | 9 | 257 | 5 | 258 | 2.18e-18 | 84.7 |
| MS.gene37692.t1 | MTR_4g092750 | 27.925 | 265 | 164 | 9 | 9 | 257 | 5 | 258 | 2.31e-18 | 84.3 |
| MS.gene37692.t1 | MTR_4g092750 | 27.925 | 265 | 164 | 9 | 9 | 257 | 5 | 258 | 2.95e-18 | 84.3 |
| MS.gene37692.t1 | MTR_1g042730 | 25.672 | 335 | 201 | 13 | 9 | 303 | 65 | 391 | 4.82e-17 | 82.0 |
| MS.gene37692.t1 | MTR_8g088160 | 26.172 | 256 | 141 | 9 | 5 | 223 | 40 | 284 | 2.14e-16 | 79.3 |
| MS.gene37692.t1 | MTR_6g035180 | 51.724 | 58 | 28 | 0 | 287 | 344 | 7 | 64 | 3.12e-16 | 72.8 |
| MS.gene37692.t1 | MTR_7g021685 | 49.231 | 65 | 32 | 1 | 5 | 69 | 4 | 67 | 1.51e-12 | 63.9 |
| MS.gene37692.t1 | MTR_4g036845 | 23.952 | 334 | 182 | 12 | 14 | 325 | 11 | 294 | 9.41e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37692.t1 | AT1G60680 | 55.718 | 341 | 143 | 4 | 4 | 343 | 6 | 339 | 6.88e-134 | 385 |
| MS.gene37692.t1 | AT1G60710 | 56.471 | 340 | 139 | 5 | 5 | 343 | 7 | 338 | 5.85e-131 | 378 |
| MS.gene37692.t1 | AT1G60690 | 54.839 | 341 | 145 | 5 | 4 | 343 | 6 | 338 | 1.37e-130 | 377 |
| MS.gene37692.t1 | AT1G60750 | 55.588 | 340 | 128 | 5 | 4 | 343 | 7 | 323 | 7.36e-130 | 374 |
| MS.gene37692.t1 | AT1G60730 | 54.706 | 340 | 145 | 5 | 5 | 343 | 7 | 338 | 4.56e-128 | 370 |
| MS.gene37692.t1 | AT1G10810 | 54.706 | 340 | 145 | 5 | 5 | 343 | 7 | 338 | 1.09e-125 | 364 |
| MS.gene37692.t1 | AT1G60730 | 51.667 | 360 | 145 | 6 | 5 | 343 | 7 | 358 | 2.68e-123 | 359 |
| MS.gene37692.t1 | AT1G10810 | 56.985 | 272 | 109 | 4 | 73 | 343 | 22 | 286 | 2.43e-104 | 308 |
| MS.gene37692.t1 | AT1G60680 | 62.557 | 219 | 77 | 2 | 4 | 222 | 6 | 219 | 1.32e-93 | 279 |
| MS.gene37692.t1 | AT1G10810 | 58.850 | 226 | 86 | 4 | 5 | 229 | 7 | 226 | 6.30e-85 | 257 |
| MS.gene37692.t1 | AT1G60730 | 53.425 | 146 | 64 | 3 | 5 | 150 | 7 | 148 | 2.41e-43 | 148 |
| MS.gene37692.t1 | AT1G04690 | 31.290 | 310 | 183 | 10 | 10 | 303 | 6 | 301 | 1.70e-31 | 121 |
| MS.gene37692.t1 | AT1G06690 | 28.446 | 341 | 197 | 13 | 7 | 319 | 48 | 369 | 3.64e-25 | 105 |
| MS.gene37692.t1 | AT4G33670 | 28.462 | 260 | 167 | 7 | 10 | 257 | 9 | 261 | 5.11e-22 | 95.1 |
| MS.gene37692.t1 | AT5G53580 | 26.786 | 336 | 197 | 15 | 7 | 317 | 39 | 350 | 1.37e-19 | 89.0 |
| MS.gene37692.t1 | AT1G04420 | 24.702 | 336 | 199 | 11 | 9 | 301 | 60 | 384 | 1.22e-14 | 74.7 |
Find 82 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGTTTACAGGAGAAAATT+TGG | 0.231620 | 1.1:+73740715 | MS.gene37692:CDS |
| TTTGGATGTGGAGGATTATC+TGG | 0.250656 | 1.1:+73739345 | MS.gene37692:CDS |
| CAGCACTCCCTCACATATTC+AGG | 0.270626 | 1.1:-73739782 | None:intergenic |
| GAAGGAAAGATAAAATATAT+TGG | 0.282400 | 1.1:+73740037 | MS.gene37692:CDS |
| AAGAAATAATTCCACTTTGC+AGG | 0.298383 | 1.1:+73740161 | MS.gene37692:CDS |
| AGTTCATCCTATTACTGATT+TGG | 0.307944 | 1.1:+73740102 | MS.gene37692:CDS |
| GAGATCTGATGTATCGAAAA+AGG | 0.319260 | 1.1:-73739439 | None:intergenic |
| GTCCAATTGGCTACGAAGTT+TGG | 0.338391 | 1.1:+73739716 | MS.gene37692:CDS |
| ATAGTATATCACAATATCTT+TGG | 0.338665 | 1.1:+73741317 | MS.gene37692:CDS |
| AAGAAGCTTTGTGTACTTGC+AGG | 0.342228 | 1.1:+73740232 | MS.gene37692:intron |
| GCTATGCATCCAAGGTTTAC+AGG | 0.342718 | 1.1:+73740704 | MS.gene37692:CDS |
| ATTAAGGAAGTATTCAATAG+AGG | 0.343469 | 1.1:+73739411 | MS.gene37692:CDS |
| TCCTATTACTGATTTGGAAA+TGG | 0.358212 | 1.1:+73740108 | MS.gene37692:CDS |
| ACAAGTCCCAAGAGTCAAAC+TGG | 0.359871 | 1.1:+73739077 | MS.gene37692:CDS |
| TCCATTTCCAAATCAGTAAT+AGG | 0.361793 | 1.1:-73740109 | None:intergenic |
| ATTAGCATGGCTTCTGCATC+AGG | 0.361890 | 1.1:+73740811 | MS.gene37692:CDS |
| TGGAAATGGAGTATTCCTTA+TGG | 0.364153 | 1.1:+73740122 | MS.gene37692:CDS |
| AAGCTTACAGTGTCTTCAAT+TGG | 0.375485 | 1.1:-73739878 | None:intergenic |
| GGGTACCCAGTTTGACTCTT+GGG | 0.376406 | 1.1:-73739083 | None:intergenic |
| AGATGGATGCTCAATTATTA+AGG | 0.376538 | 1.1:+73739395 | MS.gene37692:CDS |
| TGGGTACCCAGTTTGACTCT+TGG | 0.395833 | 1.1:-73739084 | None:intergenic |
| CGCCAAACTTCGTAGCCAAT+TGG | 0.403863 | 1.1:-73739718 | None:intergenic |
| TTTGTCTAGTCAGAGCTTGC+TGG | 0.406910 | 1.1:+73740322 | MS.gene37692:CDS |
| TGGAATGCAGGTGTCTAGGC+TGG | 0.407445 | 1.1:+73739320 | MS.gene37692:intron |
| AAGGAAAGATAAAATATATT+GGG | 0.415250 | 1.1:+73740038 | MS.gene37692:CDS |
| TAATTGAGCATCCATCTTCA+TGG | 0.417389 | 1.1:-73739389 | None:intergenic |
| ACTGGGTACCCAAGGTTTAG+AGG | 0.421560 | 1.1:+73739095 | MS.gene37692:CDS |
| AAAATTTACCTCTAAACCTT+GGG | 0.423446 | 1.1:-73739103 | None:intergenic |
| CAGGTGTCTAGGCTGGGATT+TGG | 0.427729 | 1.1:+73739327 | MS.gene37692:intron |
| TCCCCAGCAATTTCCTCAAC+GGG | 0.432009 | 1.1:-73741283 | None:intergenic |
| TCTCTATGCAATTACTTTGG+CGG | 0.441447 | 1.1:-73741355 | None:intergenic |
| TGCAGGAAAGTCAGTGGTAG+AGG | 0.445925 | 1.1:+73740298 | MS.gene37692:CDS |
| TTCAATGTCACGGGACCATA+AGG | 0.451962 | 1.1:-73740137 | None:intergenic |
| TTAAGGAAGTATTCAATAGA+GGG | 0.463934 | 1.1:+73739412 | MS.gene37692:CDS |
| TCTAGGCTGGGATTTGGATG+TGG | 0.464685 | 1.1:+73739333 | MS.gene37692:CDS |
| GCTTACACAAGAAGATTTGA+AGG | 0.464856 | 1.1:+73741243 | MS.gene37692:CDS |
| CAAACATGATAATGAAATCA+TGG | 0.469776 | 1.1:+73739470 | MS.gene37692:CDS |
| GAAAATTTACCTCTAAACCT+TGG | 0.472465 | 1.1:-73739104 | None:intergenic |
| TTTGTGTACTTGCAGGGCAT+TGG | 0.483500 | 1.1:+73740239 | MS.gene37692:CDS |
| CTATGAACGAATCAATGACT+TGG | 0.485970 | 1.1:+73740754 | MS.gene37692:CDS |
| CTCAAACAACTTGTAAATGA+AGG | 0.486296 | 1.1:+73740019 | MS.gene37692:CDS |
| TATTTCTTCTTCAATGTCAC+GGG | 0.490828 | 1.1:-73740146 | None:intergenic |
| CGTTACTTTATCTGATGGGA+TGG | 0.494293 | 1.1:+73739739 | MS.gene37692:CDS |
| TAATGAAATCATGGTTGGTA+AGG | 0.496217 | 1.1:+73739479 | MS.gene37692:CDS |
| GCTCCCCTCTCCCATGAAGA+TGG | 0.496750 | 1.1:+73739378 | MS.gene37692:CDS |
| TTTGTGGAATGCAGGTGTCT+AGG | 0.498511 | 1.1:+73739316 | MS.gene37692:intron |
| TTTGGCGTTACTTTATCTGA+TGG | 0.501663 | 1.1:+73739734 | MS.gene37692:CDS |
| ATAAAGGCAGTACCAGGGAT+AGG | 0.507637 | 1.1:-73740848 | None:intergenic |
| GTTCCCGTTGAGGAAATTGC+TGG | 0.516063 | 1.1:+73741280 | MS.gene37692:CDS |
| AAGAACTTTGAAAACAACAT+TGG | 0.517205 | 1.1:+73741205 | MS.gene37692:CDS |
| CTTGCAGGGCATTGGAATTG+TGG | 0.518472 | 1.1:+73740247 | MS.gene37692:CDS |
| TTCGATACATCAGATCTCTA+CGG | 0.518721 | 1.1:+73739444 | MS.gene37692:CDS |
| TTGGCGTTACTTTATCTGAT+GGG | 0.520907 | 1.1:+73739735 | MS.gene37692:CDS |
| TTATTTCTTCTTCAATGTCA+CGG | 0.524264 | 1.1:-73740147 | None:intergenic |
| CATGATAATGAAATCATGGT+TGG | 0.532090 | 1.1:+73739474 | MS.gene37692:CDS |
| CTTCTCAATTAGCATTAGCA+TGG | 0.532747 | 1.1:+73740798 | MS.gene37692:CDS |
| AGCATCCATCTTCATGGGAG+AGG | 0.535281 | 1.1:-73739383 | None:intergenic |
| CTCCCCAGCAATTTCCTCAA+CGG | 0.536860 | 1.1:-73741284 | None:intergenic |
| TTCCCGTTGAGGAAATTGCT+GGG | 0.537080 | 1.1:+73741281 | MS.gene37692:CDS |
| TAAAGGCAGTACCAGGGATA+GGG | 0.538643 | 1.1:-73740847 | None:intergenic |
| CATAACAGGCTATGCATCCA+AGG | 0.541468 | 1.1:+73740696 | MS.gene37692:intron |
| AATTGAGCATCCATCTTCAT+GGG | 0.547134 | 1.1:-73739388 | None:intergenic |
| CATGCTAATGCTAATTGAGA+AGG | 0.548715 | 1.1:-73740797 | None:intergenic |
| AGGCTGGGATTTGGATGTGG+AGG | 0.548733 | 1.1:+73739336 | MS.gene37692:CDS |
| AGCACTCCCTCACATATTCA+GGG | 0.555636 | 1.1:-73739781 | None:intergenic |
| GCATCCATCTTCATGGGAGA+GGG | 0.558062 | 1.1:-73739382 | None:intergenic |
| AGAAGCTTTGTGTACTTGCA+GGG | 0.561362 | 1.1:+73740233 | MS.gene37692:intron |
| TTCTGAAGCAGTTCCCGTTG+AGG | 0.562114 | 1.1:+73741270 | MS.gene37692:CDS |
| TAAGGAAGTATTCAATAGAG+GGG | 0.591144 | 1.1:+73739413 | MS.gene37692:CDS |
| CAATTAATATACCTGCAAAG+TGG | 0.593814 | 1.1:-73740172 | None:intergenic |
| GGAATGCAGGTGTCTAGGCT+GGG | 0.598837 | 1.1:+73739321 | MS.gene37692:intron |
| AATGACATAATCCCTATCCC+TGG | 0.605350 | 1.1:+73740836 | MS.gene37692:CDS |
| AAAATATATTGGGTTGTCAG+AGG | 0.607927 | 1.1:+73740048 | MS.gene37692:CDS |
| AGGTACCCCTGAATATGTGA+GGG | 0.608935 | 1.1:+73739775 | MS.gene37692:CDS |
| AGAGTCAAACTGGGTACCCA+AGG | 0.612909 | 1.1:+73739087 | MS.gene37692:CDS |
| AAGGTACCCCTGAATATGTG+AGG | 0.623139 | 1.1:+73739774 | MS.gene37692:CDS |
| TCCCGTTGAGGAAATTGCTG+GGG | 0.626472 | 1.1:+73741282 | MS.gene37692:CDS |
| CATCCATCTTCATGGGAGAG+GGG | 0.630999 | 1.1:-73739381 | None:intergenic |
| GCTGTGAAGCTAGTCTCAAG+CGG | 0.634148 | 1.1:+73739801 | MS.gene37692:CDS |
| TTAGCATGGCTTCTGCATCA+GGG | 0.655505 | 1.1:+73740812 | MS.gene37692:CDS |
| CAAGTCCCAAGAGTCAAACT+GGG | 0.662786 | 1.1:+73739078 | MS.gene37692:CDS |
| GCACTCCCTCACATATTCAG+GGG | 0.678614 | 1.1:-73739780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTACTAATCAATAA+AGG | + | chr1.1:73740965-73740984 | MS.gene37692:intron | 10.0% |
| !! | AAGGAAAGATAAAATATATT+GGG | + | chr1.1:73740038-73740057 | MS.gene37692:CDS | 15.0% |
| !! | TGAAGAATATCTTATTATAA+TGG | + | chr1.1:73740392-73740411 | MS.gene37692:intron | 15.0% |
| !! | TGTAGAATTTCTTATTATAA+TGG | + | chr1.1:73740576-73740595 | MS.gene37692:intron | 15.0% |
| !!! | TTCTTCTGAAATATAAATAA+AGG | - | chr1.1:73740867-73740886 | None:intergenic | 15.0% |
| !! | ATAGTATATCACAATATCTT+TGG | + | chr1.1:73741317-73741336 | MS.gene37692:CDS | 20.0% |
| !! | ATATTTGTTTGATACCATAT+AGG | + | chr1.1:73741169-73741188 | MS.gene37692:intron | 20.0% |
| !! | GAAGGAAAGATAAAATATAT+TGG | + | chr1.1:73740037-73740056 | MS.gene37692:CDS | 20.0% |
| !! | TATTTGTTTGATACCATATA+GGG | + | chr1.1:73741170-73741189 | MS.gene37692:intron | 20.0% |
| !!! | AAATACATAAGCATTTTGTA+TGG | + | chr1.1:73739542-73739561 | MS.gene37692:intron | 20.0% |
| !!! | AGAAGAATATGATGATTTTT+TGG | + | chr1.1:73740880-73740899 | MS.gene37692:intron | 20.0% |
| !!! | ATGATTAGTTCAAAATTAAG+AGG | + | chr1.1:73739176-73739195 | MS.gene37692:intron | 20.0% |
| ! | AAAATTTACCTCTAAACCTT+GGG | - | chr1.1:73739106-73739125 | None:intergenic | 25.0% |
| ! | AAGATGAAACTTATGGATAA+AGG | + | chr1.1:73739264-73739283 | MS.gene37692:intron | 25.0% |
| ! | AGAAATCATTAAACTACTGT+AGG | + | chr1.1:73739200-73739219 | MS.gene37692:intron | 25.0% |
| ! | AGTTATTTAGATGTGACAAA+TGG | + | chr1.1:73739632-73739651 | MS.gene37692:intron | 25.0% |
| ! | ATTAATTGCTTGACATATTC+AGG | + | chr1.1:73740911-73740930 | MS.gene37692:intron | 25.0% |
| ! | GAAAGTAGGTACTAATAAAA+GGG | - | chr1.1:73741017-73741036 | None:intergenic | 25.0% |
| ! | TAAGATAACCAAGTAAAATC+CGG | - | chr1.1:73740947-73740966 | None:intergenic | 25.0% |
| ! | TATGATGAATGTATATCTGA+AGG | - | chr1.1:73739292-73739311 | None:intergenic | 25.0% |
| ! | TGAAAGTAGGTACTAATAAA+AGG | - | chr1.1:73741018-73741037 | None:intergenic | 25.0% |
| ! | TGTGAAAAACAAATGTTAAG+TGG | - | chr1.1:73739151-73739170 | None:intergenic | 25.0% |
| ! | TTCTTTCAAGATGAAACTTA+TGG | + | chr1.1:73739257-73739276 | MS.gene37692:intron | 25.0% |
| !! | AAGAACTTTGAAAACAACAT+TGG | + | chr1.1:73741205-73741224 | MS.gene37692:CDS | 25.0% |
| !! | CAAACATGATAATGAAATCA+TGG | + | chr1.1:73739470-73739489 | MS.gene37692:CDS | 25.0% |
| !! | TTATTTCTTCTTCAATGTCA+CGG | - | chr1.1:73740150-73740169 | None:intergenic | 25.0% |
| !!! | ATTAAGGAAGTATTCAATAG+AGG | + | chr1.1:73739411-73739430 | MS.gene37692:CDS | 25.0% |
| !!! | TTAAGGAAGTATTCAATAGA+GGG | + | chr1.1:73739412-73739431 | MS.gene37692:CDS | 25.0% |
| AACAAATTTCCACTATGAAC+TGG | - | chr1.1:73739239-73739258 | None:intergenic | 30.0% | |
| AAGAAATAATTCCACTTTGC+AGG | + | chr1.1:73740161-73740180 | MS.gene37692:CDS | 30.0% | |
| AAGGTTTACAGGAGAAAATT+TGG | + | chr1.1:73740715-73740734 | MS.gene37692:CDS | 30.0% | |
| AATCATTAAACTACTGTAGG+AGG | + | chr1.1:73739203-73739222 | MS.gene37692:intron | 30.0% | |
| AATTAGTAACCAGTTCATAG+TGG | + | chr1.1:73739227-73739246 | MS.gene37692:intron | 30.0% | |
| AGATGGATGCTCAATTATTA+AGG | + | chr1.1:73739395-73739414 | MS.gene37692:CDS | 30.0% | |
| ATATAAATAAAGGCAGTACC+AGG | - | chr1.1:73740857-73740876 | None:intergenic | 30.0% | |
| ATATTCAGGCAATCTATTTC+CGG | + | chr1.1:73740925-73740944 | MS.gene37692:intron | 30.0% | |
| ATGTTAAGTGGTTGACAATA+AGG | - | chr1.1:73739139-73739158 | None:intergenic | 30.0% | |
| CAATTAATATACCTGCAAAG+TGG | - | chr1.1:73740175-73740194 | None:intergenic | 30.0% | |
| CTCAAACAACTTGTAAATGA+AGG | + | chr1.1:73740019-73740038 | MS.gene37692:CDS | 30.0% | |
| CTTTAACATTGACCTCTTTA+TGG | + | chr1.1:73739984-73740003 | MS.gene37692:intron | 30.0% | |
| GAAAATTTACCTCTAAACCT+TGG | - | chr1.1:73739107-73739126 | None:intergenic | 30.0% | |
| GAGGAAAAATAACATTGATG+AGG | + | chr1.1:73740478-73740497 | MS.gene37692:intron | 30.0% | |
| TATAAATAAAGGCAGTACCA+GGG | - | chr1.1:73740856-73740875 | None:intergenic | 30.0% | |
| TATTTCTTCTTCAATGTCAC+GGG | - | chr1.1:73740149-73740168 | None:intergenic | 30.0% | |
| TCCATTTCCAAATCAGTAAT+AGG | - | chr1.1:73740112-73740131 | None:intergenic | 30.0% | |
| TGGTCAAAATAACATTGATG+AGG | + | chr1.1:73740412-73740431 | MS.gene37692:intron | 30.0% | |
| TTCCAACACTTGTAAATTCT+CGG | + | chr1.1:73739951-73739970 | MS.gene37692:intron | 30.0% | |
| ! | AAAATATATTGGGTTGTCAG+AGG | + | chr1.1:73740048-73740067 | MS.gene37692:CDS | 30.0% |
| ! | AAATTTTCTCCTGTAAACCT+TGG | - | chr1.1:73740716-73740735 | None:intergenic | 30.0% |
| ! | AGTTCATCCTATTACTGATT+TGG | + | chr1.1:73740102-73740121 | MS.gene37692:CDS | 30.0% |
| ! | ATCTATTTCCGGATTTTACT+TGG | + | chr1.1:73740936-73740955 | MS.gene37692:intron | 30.0% |
| ! | CATGATAATGAAATCATGGT+TGG | + | chr1.1:73739474-73739493 | MS.gene37692:CDS | 30.0% |
| ! | TAATGAAATCATGGTTGGTA+AGG | + | chr1.1:73739479-73739498 | MS.gene37692:CDS | 30.0% |
| ! | TGAATCTTTTCTTCTGTCAT+AGG | + | chr1.1:73739667-73739686 | MS.gene37692:intron | 30.0% |
| !! | TAAGGAAGTATTCAATAGAG+GGG | + | chr1.1:73739413-73739432 | MS.gene37692:CDS | 30.0% |
| !! | TCCTATTACTGATTTGGAAA+TGG | + | chr1.1:73740108-73740127 | MS.gene37692:CDS | 30.0% |
| !!! | ATGTTATTTTTCCTCACTTC+AGG | - | chr1.1:73740473-73740492 | None:intergenic | 30.0% |
| AAGCTTACAGTGTCTTCAAT+TGG | - | chr1.1:73739881-73739900 | None:intergenic | 35.0% | |
| AATTGAGCATCCATCTTCAT+GGG | - | chr1.1:73739391-73739410 | None:intergenic | 35.0% | |
| ACATTCATCATAGTGCTTTG+TGG | + | chr1.1:73739300-73739319 | MS.gene37692:intron | 35.0% | |
| ACTAAGTGTAGTACTAGTAG+AGG | - | chr1.1:73739915-73739934 | None:intergenic | 35.0% | |
| ATGCATAGCCTGTTATGTTA+CGG | - | chr1.1:73740693-73740712 | None:intergenic | 35.0% | |
| ATTCAAAAGAAAATCCCTGC+AGG | - | chr1.1:73740657-73740676 | None:intergenic | 35.0% | |
| ATTGACCTCTTTATGGAAGA+TGG | + | chr1.1:73739991-73740010 | MS.gene37692:intron | 35.0% | |
| CATGCTAATGCTAATTGAGA+AGG | - | chr1.1:73740800-73740819 | None:intergenic | 35.0% | |
| CTATGAACGAATCAATGACT+TGG | + | chr1.1:73740754-73740773 | MS.gene37692:CDS | 35.0% | |
| CTTCTCAATTAGCATTAGCA+TGG | + | chr1.1:73740798-73740817 | MS.gene37692:CDS | 35.0% | |
| GAGATCTGATGTATCGAAAA+AGG | - | chr1.1:73739442-73739461 | None:intergenic | 35.0% | |
| GCTTACACAAGAAGATTTGA+AGG | + | chr1.1:73741243-73741262 | MS.gene37692:CDS | 35.0% | |
| TAAGTGGTTGACAATAAGGA+AGG | - | chr1.1:73739135-73739154 | None:intergenic | 35.0% | |
| TAATTGAGCATCCATCTTCA+TGG | - | chr1.1:73739392-73739411 | None:intergenic | 35.0% | |
| TATCCATCACTAACTTTGCT+TGG | + | chr1.1:73741040-73741059 | MS.gene37692:intron | 35.0% | |
| TCAGTTTAGTAGTCCCTATA+TGG | - | chr1.1:73741186-73741205 | None:intergenic | 35.0% | |
| TCTTCTTTCCGTAACATAAC+AGG | + | chr1.1:73740682-73740701 | MS.gene37692:intron | 35.0% | |
| TTCGATACATCAGATCTCTA+CGG | + | chr1.1:73739444-73739463 | MS.gene37692:CDS | 35.0% | |
| ! | ATTTTTCCTCACTTCAGGAA+TGG | - | chr1.1:73740468-73740487 | None:intergenic | 35.0% |
| ! | CGGTATATGGTCAAGATTTT+AGG | - | chr1.1:73741094-73741113 | None:intergenic | 35.0% |
| ! | TGGAAATGGAGTATTCCTTA+TGG | + | chr1.1:73740122-73740141 | MS.gene37692:CDS | 35.0% |
| ! | TTATCTGATGGGATGGTTTT+AGG | + | chr1.1:73739746-73739765 | MS.gene37692:CDS | 35.0% |
| ! | TTGGCGTTACTTTATCTGAT+GGG | + | chr1.1:73739735-73739754 | MS.gene37692:CDS | 35.0% |
| ! | TTTGGCGTTACTTTATCTGA+TGG | + | chr1.1:73739734-73739753 | MS.gene37692:CDS | 35.0% |
| !! | AGTGATGGATATGTGAAAGT+AGG | - | chr1.1:73741031-73741050 | None:intergenic | 35.0% |
| !! | TATCTGATGGGATGGTTTTA+GGG | + | chr1.1:73739747-73739766 | MS.gene37692:CDS | 35.0% |
| !!! | TAGCCAATTGGACTTTTTTG+CGG | - | chr1.1:73739709-73739728 | None:intergenic | 35.0% |
| AAAGAAAATCCCTGCAGGAA+TGG | - | chr1.1:73740652-73740671 | None:intergenic | 40.0% | |
| AATGACATAATCCCTATCCC+TGG | + | chr1.1:73740836-73740855 | MS.gene37692:CDS | 40.0% | |
| CACCGAGAATTTACAAGTGT+TGG | - | chr1.1:73739956-73739975 | None:intergenic | 40.0% | |
| GAATTAGTTCCATTCCTGCA+GGG | + | chr1.1:73740640-73740659 | MS.gene37692:intron | 40.0% | |
| TCATGCTTGCAGTATCTACA+CGG | - | chr1.1:73741114-73741133 | None:intergenic | 40.0% | |
| TGAATTAGTTCCATTCCTGC+AGG | + | chr1.1:73740639-73740658 | MS.gene37692:intron | 40.0% | |
| TGCAGTATCTACACGGTATA+TGG | - | chr1.1:73741107-73741126 | None:intergenic | 40.0% | |
| TTACTTCCATTCCTGAAGTG+AGG | + | chr1.1:73740459-73740478 | MS.gene37692:intron | 40.0% | |
| TTTGGATGTGGAGGATTATC+TGG | + | chr1.1:73739345-73739364 | MS.gene37692:CDS | 40.0% | |
| ! | AAGAAGCTTTGTGTACTTGC+AGG | + | chr1.1:73740232-73740251 | MS.gene37692:intron | 40.0% |
| ! | AGAAGCTTTGTGTACTTGCA+GGG | + | chr1.1:73740233-73740252 | MS.gene37692:intron | 40.0% |
| ! | CGTTACTTTATCTGATGGGA+TGG | + | chr1.1:73739739-73739758 | MS.gene37692:CDS | 40.0% |
| !!! | AGCCAATTGGACTTTTTTGC+GGG | - | chr1.1:73739708-73739727 | None:intergenic | 40.0% |
| !!! | ATCTGATGGGATGGTTTTAG+GGG | + | chr1.1:73739748-73739767 | MS.gene37692:CDS | 40.0% |
| !!! | CTTTTTTGCAGGAAAGTCAG+TGG | + | chr1.1:73740292-73740311 | MS.gene37692:CDS | 40.0% |
| ACAAGTCCCAAGAGTCAAAC+TGG | + | chr1.1:73739077-73739096 | MS.gene37692:CDS | 45.0% | |
| AGCACTCCCTCACATATTCA+GGG | - | chr1.1:73739784-73739803 | None:intergenic | 45.0% | |
| AGGTACCCCTGAATATGTGA+GGG | + | chr1.1:73739775-73739794 | MS.gene37692:CDS | 45.0% | |
| ATAAAGGCAGTACCAGGGAT+AGG | - | chr1.1:73740851-73740870 | None:intergenic | 45.0% | |
| ATTAGCATGGCTTCTGCATC+AGG | + | chr1.1:73740811-73740830 | MS.gene37692:CDS | 45.0% | |
| CAAGTCCCAAGAGTCAAACT+GGG | + | chr1.1:73739078-73739097 | MS.gene37692:CDS | 45.0% | |
| CATAACAGGCTATGCATCCA+AGG | + | chr1.1:73740696-73740715 | MS.gene37692:intron | 45.0% | |
| CATAGTGCTTTGTGGAATGC+AGG | + | chr1.1:73739308-73739327 | MS.gene37692:intron | 45.0% | |
| CTCCTCCATCTTCCATAAAG+AGG | - | chr1.1:73739999-73740018 | None:intergenic | 45.0% | |
| GACCTCTTTATGGAAGATGG+AGG | + | chr1.1:73739994-73740013 | MS.gene37692:intron | 45.0% | |
| GCTATGCATCCAAGGTTTAC+AGG | + | chr1.1:73740704-73740723 | MS.gene37692:CDS | 45.0% | |
| GTCCAATTGGCTACGAAGTT+TGG | + | chr1.1:73739716-73739735 | MS.gene37692:CDS | 45.0% | |
| GTGCCAAGCAAAGTTAGTGA+TGG | - | chr1.1:73741046-73741065 | None:intergenic | 45.0% | |
| GTGGTTGACAATAAGGAAGG+AGG | - | chr1.1:73739132-73739151 | None:intergenic | 45.0% | |
| TAAAGGCAGTACCAGGGATA+GGG | - | chr1.1:73740850-73740869 | None:intergenic | 45.0% | |
| TCCCCGCAAAAAAGTCCAAT+TGG | + | chr1.1:73739703-73739722 | MS.gene37692:CDS | 45.0% | |
| TTAGCATGGCTTCTGCATCA+GGG | + | chr1.1:73740812-73740831 | MS.gene37692:CDS | 45.0% | |
| TTCAATGTCACGGGACCATA+AGG | - | chr1.1:73740140-73740159 | None:intergenic | 45.0% | |
| TTCCCGTTGAGGAAATTGCT+GGG | + | chr1.1:73741281-73741300 | MS.gene37692:CDS | 45.0% | |
| TTTGTCTAGTCAGAGCTTGC+TGG | + | chr1.1:73740322-73740341 | MS.gene37692:CDS | 45.0% | |
| TTTGTGGAATGCAGGTGTCT+AGG | + | chr1.1:73739316-73739335 | MS.gene37692:intron | 45.0% | |
| TTTGTGTACTTGCAGGGCAT+TGG | + | chr1.1:73740239-73740258 | MS.gene37692:CDS | 45.0% | |
| ! | AAGGTACCCCTGAATATGTG+AGG | + | chr1.1:73739774-73739793 | MS.gene37692:CDS | 45.0% |
| !!! | GCCAATTGGACTTTTTTGCG+GGG | - | chr1.1:73739707-73739726 | None:intergenic | 45.0% |
| !!! | GGGATGGTTTTAGGGGTAAA+AGG | + | chr1.1:73739755-73739774 | MS.gene37692:CDS | 45.0% |
| ACTGGGTACCCAAGGTTTAG+AGG | + | chr1.1:73739095-73739114 | MS.gene37692:CDS | 50.0% | |
| AGAGTCAAACTGGGTACCCA+AGG | + | chr1.1:73739087-73739106 | MS.gene37692:CDS | 50.0% | |
| AGCATCCATCTTCATGGGAG+AGG | - | chr1.1:73739386-73739405 | None:intergenic | 50.0% | |
| CAGCACTCCCTCACATATTC+AGG | - | chr1.1:73739785-73739804 | None:intergenic | 50.0% | |
| CATCCATCTTCATGGGAGAG+GGG | - | chr1.1:73739384-73739403 | None:intergenic | 50.0% | |
| CGCCAAACTTCGTAGCCAAT+TGG | - | chr1.1:73739721-73739740 | None:intergenic | 50.0% | |
| CTCCCCAGCAATTTCCTCAA+CGG | - | chr1.1:73741287-73741306 | None:intergenic | 50.0% | |
| GCACTCCCTCACATATTCAG+GGG | - | chr1.1:73739783-73739802 | None:intergenic | 50.0% | |
| GCATCCATCTTCATGGGAGA+GGG | - | chr1.1:73739385-73739404 | None:intergenic | 50.0% | |
| GGGTACCCAGTTTGACTCTT+GGG | - | chr1.1:73739086-73739105 | None:intergenic | 50.0% | |
| GTTCCCGTTGAGGAAATTGC+TGG | + | chr1.1:73741280-73741299 | MS.gene37692:CDS | 50.0% | |
| TCCCCAGCAATTTCCTCAAC+GGG | - | chr1.1:73741286-73741305 | None:intergenic | 50.0% | |
| TCCCGTTGAGGAAATTGCTG+GGG | + | chr1.1:73741282-73741301 | MS.gene37692:CDS | 50.0% | |
| TCTAGGCTGGGATTTGGATG+TGG | + | chr1.1:73739333-73739352 | MS.gene37692:CDS | 50.0% | |
| TGCAAAAAAGCCGCGACCAA+GGG | - | chr1.1:73740282-73740301 | None:intergenic | 50.0% | |
| TGCAGGAAAGTCAGTGGTAG+AGG | + | chr1.1:73740298-73740317 | MS.gene37692:CDS | 50.0% | |
| TGGGTACCCAGTTTGACTCT+TGG | - | chr1.1:73739087-73739106 | None:intergenic | 50.0% | |
| ! | GCTGTGAAGCTAGTCTCAAG+CGG | + | chr1.1:73739801-73739820 | MS.gene37692:CDS | 50.0% |
| !! | CTTGCAGGGCATTGGAATTG+TGG | + | chr1.1:73740247-73740266 | MS.gene37692:CDS | 50.0% |
| !! | TTCTGAAGCAGTTCCCGTTG+AGG | + | chr1.1:73741270-73741289 | MS.gene37692:CDS | 50.0% |
| AGGCTGGGATTTGGATGTGG+AGG | + | chr1.1:73739336-73739355 | MS.gene37692:CDS | 55.0% | |
| ATTGTGGCATACAGCCCCCT+TGG | + | chr1.1:73740263-73740282 | MS.gene37692:CDS | 55.0% | |
| CAAAAAAGCCGCGACCAAGG+GGG | - | chr1.1:73740280-73740299 | None:intergenic | 55.0% | |
| CAGGTGTCTAGGCTGGGATT+TGG | + | chr1.1:73739327-73739346 | MS.gene37692:intron | 55.0% | |
| CTGCAAAAAAGCCGCGACCA+AGG | - | chr1.1:73740283-73740302 | None:intergenic | 55.0% | |
| GCAAAAAAGCCGCGACCAAG+GGG | - | chr1.1:73740281-73740300 | None:intergenic | 55.0% | |
| GGAATGCAGGTGTCTAGGCT+GGG | + | chr1.1:73739321-73739340 | MS.gene37692:intron | 55.0% | |
| TGGAATGCAGGTGTCTAGGC+TGG | + | chr1.1:73739320-73739339 | MS.gene37692:intron | 55.0% | |
| !!! | CTTGGTCGCGGCTTTTTTGC+AGG | + | chr1.1:73740281-73740300 | MS.gene37692:CDS | 55.0% |
| GCTCCCCTCTCCCATGAAGA+TGG | + | chr1.1:73739378-73739397 | MS.gene37692:CDS | 60.0% | |
| GCATACAGCCCCCTTGGTCG+CGG | + | chr1.1:73740269-73740288 | MS.gene37692:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 73739069 | 73741366 | 73739069 | ID=MS.gene37692 |
| chr1.1 | mRNA | 73739069 | 73741366 | 73739069 | ID=MS.gene37692.t1;Parent=MS.gene37692 |
| chr1.1 | exon | 73739069 | 73739116 | 73739069 | ID=MS.gene37692.t1.exon1;Parent=MS.gene37692.t1 |
| chr1.1 | CDS | 73739069 | 73739116 | 73739069 | ID=cds.MS.gene37692.t1;Parent=MS.gene37692.t1 |
| chr1.1 | exon | 73739330 | 73739500 | 73739330 | ID=MS.gene37692.t1.exon2;Parent=MS.gene37692.t1 |
| chr1.1 | CDS | 73739330 | 73739500 | 73739330 | ID=cds.MS.gene37692.t1;Parent=MS.gene37692.t1 |
| chr1.1 | exon | 73739689 | 73739892 | 73739689 | ID=MS.gene37692.t1.exon3;Parent=MS.gene37692.t1 |
| chr1.1 | CDS | 73739689 | 73739892 | 73739689 | ID=cds.MS.gene37692.t1;Parent=MS.gene37692.t1 |
| chr1.1 | exon | 73740010 | 73740182 | 73740010 | ID=MS.gene37692.t1.exon4;Parent=MS.gene37692.t1 |
| chr1.1 | CDS | 73740010 | 73740182 | 73740010 | ID=cds.MS.gene37692.t1;Parent=MS.gene37692.t1 |
| chr1.1 | exon | 73740235 | 73740343 | 73740235 | ID=MS.gene37692.t1.exon5;Parent=MS.gene37692.t1 |
| chr1.1 | CDS | 73740235 | 73740343 | 73740235 | ID=cds.MS.gene37692.t1;Parent=MS.gene37692.t1 |
| chr1.1 | exon | 73740704 | 73740857 | 73740704 | ID=MS.gene37692.t1.exon6;Parent=MS.gene37692.t1 |
| chr1.1 | CDS | 73740704 | 73740857 | 73740704 | ID=cds.MS.gene37692.t1;Parent=MS.gene37692.t1 |
| chr1.1 | exon | 73741191 | 73741366 | 73741191 | ID=MS.gene37692.t1.exon7;Parent=MS.gene37692.t1 |
| chr1.1 | CDS | 73741191 | 73741366 | 73741191 | ID=cds.MS.gene37692.t1;Parent=MS.gene37692.t1 |
| Gene Sequence |
| Protein sequence |
