Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050589.t1 | AES82720.2 | 98.8 | 1283 | 7 | 1 | 1 | 1274 | 1 | 1283 | 0.00E+00 | 2488.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050589.t1 | Q5S2C3 | 84.0 | 1282 | 193 | 5 | 1 | 1273 | 1 | 1279 | 0.0e+00 | 2154.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050589.t1 | G7L2Z6 | 98.8 | 1283 | 7 | 1 | 1 | 1274 | 1 | 1283 | 0.0e+00 | 2488.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene050589 | 0.832882 | 7.33E-56 | -1.69E-46 |
| MS.gene050589 | MS.gene051067 | 0.82962 | 4.65E-55 | -1.69E-46 |
| MS.gene050589 | MS.gene053929 | 0.801842 | 7.44E-49 | -1.69E-46 |
| MS.gene050589 | MS.gene058197 | 0.802968 | 4.36E-49 | -1.69E-46 |
| MS.gene050589 | MS.gene058198 | 0.806714 | 7.19E-50 | -1.69E-46 |
| MS.gene050589 | MS.gene061841 | 0.811647 | 6.31E-51 | -1.69E-46 |
| MS.gene050589 | MS.gene064081 | 0.803197 | 3.91E-49 | -1.69E-46 |
| MS.gene050589 | MS.gene065643 | 0.830307 | 3.16E-55 | -1.69E-46 |
| MS.gene050589 | MS.gene071182 | 0.807699 | 4.45E-50 | -1.69E-46 |
| MS.gene050589 | MS.gene07246 | 0.801927 | 7.15E-49 | -1.69E-46 |
| MS.gene050589 | MS.gene073606 | 0.806122 | 9.59E-50 | -1.69E-46 |
| MS.gene050589 | MS.gene074399 | 0.82347 | 1.36E-53 | -1.69E-46 |
| MS.gene050589 | MS.gene08529 | 0.825798 | 3.85E-54 | -1.69E-46 |
| MS.gene050589 | MS.gene09275 | 0.811764 | 5.95E-51 | -1.69E-46 |
| MS.gene050589 | MS.gene25904 | 0.826213 | 3.07E-54 | -1.69E-46 |
| MS.gene050589 | MS.gene25906 | 0.822421 | 2.39E-53 | -1.69E-46 |
| MS.gene050589 | MS.gene26381 | 0.808013 | 3.82E-50 | -1.69E-46 |
| MS.gene050589 | MS.gene30156 | 0.824002 | 1.02E-53 | -1.69E-46 |
| MS.gene050589 | MS.gene32024 | 0.812124 | 4.97E-51 | -1.69E-46 |
| MS.gene050589 | MS.gene35715 | 0.813781 | 2.15E-51 | -1.69E-46 |
| MS.gene050589 | MS.gene37692 | 0.8051 | 1.57E-49 | -1.69E-46 |
| MS.gene050589 | MS.gene39523 | 0.835429 | 1.69E-56 | -1.69E-46 |
| MS.gene050589 | MS.gene41164 | 0.834527 | 2.85E-56 | -1.69E-46 |
| MS.gene050589 | MS.gene42296 | 0.82832 | 9.60E-55 | -1.69E-46 |
| MS.gene050589 | MS.gene47439 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene050589 | MS.gene52607 | 0.807629 | 4.60E-50 | -1.69E-46 |
| MS.gene050589 | MS.gene56800 | 0.819718 | 1.00E-52 | -1.69E-46 |
| MS.gene050589 | MS.gene60118 | 0.820363 | 7.14E-53 | -1.69E-46 |
| MS.gene050589 | MS.gene63853 | 0.802174 | 6.36E-49 | -1.69E-46 |
| MS.gene050589 | MS.gene70580 | 0.823196 | 1.58E-53 | -1.69E-46 |
| MS.gene050589 | MS.gene74270 | 0.814895 | 1.22E-51 | -1.69E-46 |
| MS.gene050589 | MS.gene74272 | 0.807476 | 4.96E-50 | -1.69E-46 |
| MS.gene050589 | MS.gene90490 | 0.830697 | 2.54E-55 | -1.69E-46 |
| MS.gene050589 | MS.gene94168 | 0.808839 | 2.54E-50 | -1.69E-46 |
| MS.gene050589 | MS.gene94360 | 0.821318 | 4.30E-53 | -1.69E-46 |
| MS.gene050589 | MS.gene99224 | 0.822518 | 2.27E-53 | -1.69E-46 |
| MS.gene050589 | MS.gene99878 | 0.814626 | 1.40E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050589.t1 | MTR_7g116590 | 98.753 | 1283 | 7 | 1 | 1 | 1274 | 1 | 1283 | 0.0 | 2612 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050589.t1 | AT5G18410 | 84.009 | 1282 | 193 | 5 | 1 | 1273 | 1 | 1279 | 0.0 | 2238 |
| MS.gene050589.t1 | AT5G18410 | 83.788 | 1283 | 195 | 6 | 1 | 1273 | 1 | 1280 | 0.0 | 2228 |
| MS.gene050589.t1 | AT5G18410 | 85.812 | 1022 | 135 | 3 | 1 | 1013 | 1 | 1021 | 0.0 | 1819 |
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGGTTGCCGATGCTTTA+TGG | 0.102526 | 7.3:-1570653 | MS.gene050589:CDS |
| CCCTGGCTGGGCTTGCTTCC+TGG | 0.112811 | 7.3:-1557928 | MS.gene050589:CDS |
| ACTGAATCTCCCAGTCTTTC+AGG | 0.160377 | 7.3:+1556138 | None:intergenic |
| CGAGTTTGGGAAGAAAATTT+TGG | 0.199440 | 7.3:+1573598 | None:intergenic |
| GAACTCTCACTTTGCTGTTC+AGG | 0.201208 | 7.3:-1555989 | MS.gene050589:intron |
| AAGCCAAGCTGACTTATATT+TGG | 0.205678 | 7.3:-1576264 | MS.gene050589:CDS |
| GTTGAAGTTGTTTGATGTTC+TGG | 0.214166 | 7.3:-1575900 | MS.gene050589:CDS |
| GGAAGAAGGCCAATTGATTT+TGG | 0.229418 | 7.3:+1560837 | None:intergenic |
| TAGATAAATATTGTAGTAAA+TGG | 0.231486 | 7.3:-1556509 | MS.gene050589:CDS |
| CAGACTGATCAATATATTTA+AGG | 0.240613 | 7.3:-1574063 | MS.gene050589:intron |
| TTAATATATGAGGTGGTTTC+CGG | 0.242111 | 7.3:-1567325 | MS.gene050589:CDS |
| TGACAGATCTTGGTTTCTTA+TGG | 0.268101 | 7.3:-1566223 | MS.gene050589:CDS |
| AGACCTGAGCGGCGCATTAA+TGG | 0.272875 | 7.3:-1576024 | MS.gene050589:CDS |
| AACATATCAAGTTCTGGATT+TGG | 0.282544 | 7.3:-1576240 | MS.gene050589:CDS |
| GAAGGGTGAGAAGGCGAGTT+TGG | 0.295018 | 7.3:+1573584 | None:intergenic |
| CAGGACTACTTGATTGTACT+TGG | 0.297641 | 7.3:+1556157 | None:intergenic |
| CGACTGCATAGCGGATTCTT+TGG | 0.303301 | 7.3:-1561982 | MS.gene050589:CDS |
| TATCTAATTGTCAATCATAT+TGG | 0.304422 | 7.3:-1572734 | MS.gene050589:CDS |
| TCTTAACTGGGAGACAAAAT+TGG | 0.307716 | 7.3:-1559984 | MS.gene050589:CDS |
| AGAGTCTTCACGAGTCATTC+AGG | 0.313464 | 7.3:-1566183 | MS.gene050589:intron |
| ATGCCATCTCCTTTCCCTCT+TGG | 0.319198 | 7.3:+1576911 | None:intergenic |
| CATGCAAACTGCTCCCTGGC+TGG | 0.321437 | 7.3:-1557941 | MS.gene050589:CDS |
| TTTGGAAACATATCAAGTTC+TGG | 0.328443 | 7.3:-1576246 | MS.gene050589:CDS |
| TTGCCCAAGCAAATAAATTA+TGG | 0.328791 | 7.3:+1556098 | None:intergenic |
| ACTGGTTGCCGATGCTTTAT+GGG | 0.332179 | 7.3:-1570652 | MS.gene050589:CDS |
| TGCTGTAGAGTCCTTGGAAT+TGG | 0.332314 | 7.3:-1574204 | MS.gene050589:CDS |
| TTGTTAAAGAACATCTTAAC+TGG | 0.332654 | 7.3:-1559997 | MS.gene050589:CDS |
| CCATTGAATGCTCTCTTCCC+TGG | 0.332682 | 7.3:-1565952 | MS.gene050589:CDS |
| ACATAGAAGCTAATGTGTTT+TGG | 0.333169 | 7.3:+1570598 | None:intergenic |
| GCAGATGGACTGCACGCATT+TGG | 0.338071 | 7.3:-1572445 | MS.gene050589:CDS |
| GTATTGCAGAGGATGAAATT+TGG | 0.341964 | 7.3:+1563142 | None:intergenic |
| TGCCATCTCCTTTCCCTCTT+GGG | 0.342333 | 7.3:+1576912 | None:intergenic |
| CTTGAATACTGGAAGTGTTC+TGG | 0.349774 | 7.3:-1556562 | MS.gene050589:CDS |
| GGAGGAATTAGACGATTTAC+AGG | 0.351791 | 7.3:-1575044 | MS.gene050589:intron |
| AGTTGCCCCAACTGCTGCTC+AGG | 0.355424 | 7.3:-1569224 | MS.gene050589:intron |
| GGCCTACAATATCTCATCTT+TGG | 0.356233 | 7.3:-1576002 | MS.gene050589:intron |
| TACAAGGCTAACTTGAATAC+TGG | 0.358245 | 7.3:-1556573 | MS.gene050589:CDS |
| TTGCTTGAACCAATGATAAC+AGG | 0.358595 | 7.3:-1560876 | MS.gene050589:CDS |
| TTGTACCATGAAAAGTCATT+AGG | 0.361048 | 7.3:+1575839 | None:intergenic |
| TGCACCATAATTTATTTGCT+TGG | 0.365964 | 7.3:-1556102 | MS.gene050589:CDS |
| CAGATGGACTGCACGCATTT+GGG | 0.370475 | 7.3:-1572444 | MS.gene050589:CDS |
| TCTTGTAATCCTGTTATCAT+TGG | 0.374957 | 7.3:+1560867 | None:intergenic |
| TCAGGATTCTTTCTGATATG+AGG | 0.375171 | 7.3:-1569354 | MS.gene050589:intron |
| GCACCATAATTTATTTGCTT+GGG | 0.379820 | 7.3:-1556101 | MS.gene050589:CDS |
| TGGCTTTGCTTCATAGAATC+AGG | 0.382246 | 7.3:+1576281 | None:intergenic |
| TGAGGACCCTTTCAGCTGAT+TGG | 0.382438 | 7.3:-1569336 | MS.gene050589:CDS |
| GGCTTGCTTCCTGGAGCAGA+TGG | 0.385757 | 7.3:-1557919 | MS.gene050589:CDS |
| GAAAATGGTTTCGCACAATC+TGG | 0.386336 | 7.3:+1565442 | None:intergenic |
| ACTGGGAGATTCAGTTGCTT+GGG | 0.386605 | 7.3:-1556130 | MS.gene050589:CDS |
| CGCAAAAGAATGTGGCGCTC+TGG | 0.388153 | 7.3:+1574164 | None:intergenic |
| CTTTCAAGGAGACCAGAGTT+TGG | 0.394008 | 7.3:+1565902 | None:intergenic |
| ACTCCAGGTCCTTGCACCTC+TGG | 0.394367 | 7.3:+1577304 | None:intergenic |
| CTTCACGGTATCAAAGAGAT+TGG | 0.395330 | 7.3:-1559944 | MS.gene050589:CDS |
| AAAGTCCGCCTGGTCTTCTA+AGG | 0.395427 | 7.3:+1567296 | None:intergenic |
| GACTGGGAGATTCAGTTGCT+TGG | 0.397009 | 7.3:-1556131 | MS.gene050589:CDS |
| GACCTGAGCGGCGCATTAAT+GGG | 0.400919 | 7.3:-1576023 | MS.gene050589:CDS |
| AGTATTTGCTGTAGAGTCCT+TGG | 0.407108 | 7.3:-1574210 | MS.gene050589:CDS |
| TCAAATCTTATACGATGTAA+TGG | 0.407331 | 7.3:+1555610 | None:intergenic |
| GTTGCCACATTGACAGATCT+TGG | 0.407505 | 7.3:-1566233 | MS.gene050589:CDS |
| ATGCAAACTGCTCCCTGGCT+GGG | 0.411564 | 7.3:-1557940 | MS.gene050589:CDS |
| ATCAAGTAGTCCTGAAAGAC+TGG | 0.412736 | 7.3:-1556148 | MS.gene050589:CDS |
| GCTGCAATGGCTTCTTCAAC+GGG | 0.417026 | 7.3:+1578514 | None:intergenic |
| AAGGGTGAGAAGGCGAGTTT+GGG | 0.417042 | 7.3:+1573585 | None:intergenic |
| GGTAAAATCACTAACCACTA+TGG | 0.421756 | 7.3:+1563643 | None:intergenic |
| AGATTGGGAGTGTATTATAC+TGG | 0.425377 | 7.3:-1559928 | MS.gene050589:CDS |
| AGCAGCATATTGAGCCTCAT+AGG | 0.428361 | 7.3:+1565246 | None:intergenic |
| CTCTCTTCCCTGGATGTTGG+TGG | 0.429977 | 7.3:-1565942 | MS.gene050589:CDS |
| TTGAGCTACATAGGGATACT+TGG | 0.430198 | 7.3:-1556190 | MS.gene050589:intron |
| AGATGCAGATCTGGAAAAGC+AGG | 0.431038 | 7.3:+1573661 | None:intergenic |
| GCTGGAGAGAGATGCAGATC+TGG | 0.441433 | 7.3:+1573652 | None:intergenic |
| AATTCCTTCATTATCGCAGC+TGG | 0.442610 | 7.3:+1573634 | None:intergenic |
| GGTTAATGATTTAAAACAGC+TGG | 0.443411 | 7.3:-1567248 | MS.gene050589:CDS |
| GGTGGAAGCTCGTGAGGTGC+TGG | 0.446512 | 7.3:+1573562 | None:intergenic |
| CAACCAGAGGTGCAAGGACC+TGG | 0.451419 | 7.3:-1577307 | MS.gene050589:CDS |
| GGTGCAACAGAGAGTCCAAT+AGG | 0.452973 | 7.3:-1577262 | MS.gene050589:intron |
| TGGGATCCCGCTCATTACCT+TGG | 0.453514 | 7.3:-1561927 | MS.gene050589:CDS |
| TGCAGACCTGAGCAGCAGTT+GGG | 0.453857 | 7.3:+1569218 | None:intergenic |
| TCCAGGAAGCAAGCCCAGCC+AGG | 0.454308 | 7.3:+1557927 | None:intergenic |
| ATGTATGATATGATTGTTGA+AGG | 0.454528 | 7.3:-1572482 | MS.gene050589:CDS |
| GAATCCATGCCAAAATCAAT+TGG | 0.454554 | 7.3:-1560846 | MS.gene050589:CDS |
| GCTGCAATGGTTTCATATCC+TGG | 0.454665 | 7.3:-1557832 | MS.gene050589:CDS |
| CTTCCACTTCTGCGATATTG+AGG | 0.456346 | 7.3:+1556037 | None:intergenic |
| CCGATGGTTCTGATGTTGAT+TGG | 0.462073 | 7.3:-1572526 | MS.gene050589:CDS |
| TTTCACATATTACAAAAGTT+GGG | 0.462179 | 7.3:-1565423 | MS.gene050589:CDS |
| GAGATCTTTCTTCTTTCTGA+AGG | 0.462496 | 7.3:+1570566 | None:intergenic |
| TGGAGTGCTGCGCCCAAGAC+AGG | 0.471631 | 7.3:-1556489 | MS.gene050589:CDS |
| GATCTCTTGACAGTAGTTCA+TGG | 0.473498 | 7.3:+1563493 | None:intergenic |
| TTCACGGTATCAAAGAGATT+GGG | 0.473641 | 7.3:-1559943 | MS.gene050589:CDS |
| TCAGGAATTAGAGAAGTTGT+TGG | 0.475187 | 7.3:-1563532 | MS.gene050589:intron |
| TTTCATAGTCAGAGAAAGAT+GGG | 0.477890 | 7.3:+1572378 | None:intergenic |
| AGGACTTTCACACAAGTTAG+TGG | 0.479280 | 7.3:-1575094 | MS.gene050589:CDS |
| AGCCATCCAATCAGCTGAAA+GGG | 0.483476 | 7.3:+1569330 | None:intergenic |
| GAAAGAAGAAAGATCTCTCT+AGG | 0.484159 | 7.3:-1570560 | MS.gene050589:intron |
| GGGATGGGAAGCCTTATTAG+AGG | 0.484228 | 7.3:-1555737 | MS.gene050589:CDS |
| CAATTTCAAAAGATTTCTAC+CGG | 0.486585 | 7.3:-1556452 | MS.gene050589:CDS |
| TTCTAGCCGACTGGCCTCAC+AGG | 0.488474 | 7.3:-1563406 | MS.gene050589:intron |
| ATGCTCTCTTCCCTGGATGT+TGG | 0.491215 | 7.3:-1565945 | MS.gene050589:CDS |
| GGCCCATTAATGCGCCGCTC+AGG | 0.492250 | 7.3:+1576021 | None:intergenic |
| GCAGTTGGGGCAACTGCCCT+TGG | 0.494854 | 7.3:+1569232 | None:intergenic |
| GATTTAAAGAGACTGACAAC+AGG | 0.495289 | 7.3:+1557862 | None:intergenic |
| AGCTGCAATGGCTTCTTCAA+CGG | 0.496178 | 7.3:+1578513 | None:intergenic |
| TTTGGAGACCACTGTATATC+CGG | 0.496455 | 7.3:+1556433 | None:intergenic |
| ATAATTACAGCGCAGAAGAA+AGG | 0.496561 | 7.3:-1570740 | MS.gene050589:CDS |
| GTTGTTGATGTGCAGCTACT+TGG | 0.497796 | 7.3:-1563770 | MS.gene050589:intron |
| TACACAATCCACCAACATCC+AGG | 0.498517 | 7.3:+1565934 | None:intergenic |
| CTTTAAGCATGGAGAATACA+TGG | 0.499719 | 7.3:+1555686 | None:intergenic |
| TCTGCAGTTCTTAATATATG+AGG | 0.499895 | 7.3:-1567335 | MS.gene050589:CDS |
| TACAAAAGCTCTCAATCAGC+TGG | 0.502750 | 7.3:-1577028 | MS.gene050589:intron |
| TTTCCAAATATAAGTCAGCT+TGG | 0.502976 | 7.3:+1576261 | None:intergenic |
| GTCACTAGGACAACAAGAAC+AGG | 0.505272 | 7.3:+1574134 | None:intergenic |
| CCTGTCACGCCTCCATCAAA+AGG | 0.505414 | 7.3:+1560816 | None:intergenic |
| CCAGGGAAGAGAGCATTCAA+TGG | 0.506399 | 7.3:+1565952 | None:intergenic |
| TTCTTCACCTCCATGTTGTG+AGG | 0.506681 | 7.3:+1569276 | None:intergenic |
| TTCTCTTACCCAAGAGGGAA+AGG | 0.506687 | 7.3:-1576920 | MS.gene050589:CDS |
| GGGGCAGCGGGCTTTAAGCA+TGG | 0.507212 | 7.3:+1555675 | None:intergenic |
| GACCCTTTCAGCTGATTGGA+TGG | 0.507844 | 7.3:-1569332 | MS.gene050589:CDS |
| ACTAGGCTTAGCAGAGGGTA+TGG | 0.508209 | 7.3:+1563069 | None:intergenic |
| GAAGCAGGTGATGGGCAACC+AGG | 0.510993 | 7.3:+1557814 | None:intergenic |
| GAAGCTCGTGAGGTGCTGGA+AGG | 0.511478 | 7.3:+1573566 | None:intergenic |
| TAAATCTACAGCTGCTGCAA+TGG | 0.513636 | 7.3:-1557845 | MS.gene050589:CDS |
| CTGAGTAGTCTAAAATATGC+AGG | 0.516697 | 7.3:+1567197 | None:intergenic |
| CACCAAAGATGAGATATTGT+AGG | 0.517649 | 7.3:+1576000 | None:intergenic |
| ATCTTTCTCTGACTATGAAA+AGG | 0.519273 | 7.3:-1572375 | MS.gene050589:intron |
| CTATGATGAAATTGAGGCTG+AGG | 0.519666 | 7.3:-1565807 | MS.gene050589:intron |
| GTTTCTCTATGATGAAATTG+AGG | 0.520053 | 7.3:-1565813 | MS.gene050589:CDS |
| CGCCTCCATCAAAAGGAAGA+AGG | 0.520769 | 7.3:+1560823 | None:intergenic |
| AATGTCAATGAAGCCTGTCT+TGG | 0.522498 | 7.3:+1556476 | None:intergenic |
| GGGAGTGTATTATACTGGAT+GGG | 0.525530 | 7.3:-1559923 | MS.gene050589:CDS |
| CCTTGGTGTTGCTGAAGCAA+CGG | 0.526248 | 7.3:-1565835 | MS.gene050589:CDS |
| CTCTCCAGCTGCGATAATGA+AGG | 0.529742 | 7.3:-1573638 | MS.gene050589:CDS |
| TTGTGTCAAAGCACTTCCTC+AGG | 0.530420 | 7.3:-1576866 | MS.gene050589:intron |
| CAATAGTGGCTCAGAAGTCC+CGG | 0.530537 | 7.3:-1567269 | MS.gene050589:CDS |
| AGTACGCTGTGCAGCCTATG+AGG | 0.530538 | 7.3:-1565260 | MS.gene050589:CDS |
| GAATCATTATAGATGTCAAA+TGG | 0.531526 | 7.3:+1565869 | None:intergenic |
| TGGGAGTGTATTATACTGGA+TGG | 0.531938 | 7.3:-1559924 | MS.gene050589:CDS |
| AATATTTGTCCATCTGCTCC+AGG | 0.532604 | 7.3:+1557910 | None:intergenic |
| CAGGGAAGAGAGCATTCAAT+GGG | 0.533436 | 7.3:+1565953 | None:intergenic |
| CCAGGAAGCAAGCCCAGCCA+GGG | 0.534028 | 7.3:+1557928 | None:intergenic |
| GATCCTCAATATCGCAGAAG+TGG | 0.534291 | 7.3:-1556040 | MS.gene050589:CDS |
| TGTTCGATATATGATCAAGA+AGG | 0.535432 | 7.3:+1561893 | None:intergenic |
| GGGGCTTCTAGATATTGTGT+TGG | 0.537743 | 7.3:-1559903 | MS.gene050589:intron |
| CAAATATTACCTTCTCAAGA+TGG | 0.538907 | 7.3:-1557895 | MS.gene050589:CDS |
| TCTGAGGCAAAGAGAAAGGT+AGG | 0.539472 | 7.3:+1565294 | None:intergenic |
| CGAACGATAGAAAACATATG+AGG | 0.539584 | 7.3:+1561955 | None:intergenic |
| GGAGATTCAGTTGCTTGGGG+AGG | 0.539713 | 7.3:-1556126 | MS.gene050589:CDS |
| ATGCAGACCTGAGCAGCAGT+TGG | 0.540704 | 7.3:+1569217 | None:intergenic |
| TCAAAACAAGCAGAAGCTGC+AGG | 0.543954 | 7.3:-1557778 | MS.gene050589:intron |
| TAGCCATCCAATCAGCTGAA+AGG | 0.544691 | 7.3:+1569329 | None:intergenic |
| CTGAAAGCCGAGGTTCTTCA+CGG | 0.545165 | 7.3:-1559959 | MS.gene050589:CDS |
| TGATTCAGCTCAGCAAGCCT+TGG | 0.546700 | 7.3:-1565852 | MS.gene050589:CDS |
| ATGGCATCAGAACACTTTCA+AGG | 0.546812 | 7.3:+1565888 | None:intergenic |
| ATCTCTTGACAGTAGTTCAT+GGG | 0.547445 | 7.3:+1563494 | None:intergenic |
| ATGTCAATGAAGCCTGTCTT+GGG | 0.549784 | 7.3:+1556477 | None:intergenic |
| GGAGTGTATTATACTGGATG+GGG | 0.554367 | 7.3:-1559922 | MS.gene050589:CDS |
| CGATACCTCAAGCGAGAATG+TGG | 0.555672 | 7.3:+1578486 | None:intergenic |
| CAGAATTCTCTTACCCAAGA+GGG | 0.557336 | 7.3:-1576925 | MS.gene050589:CDS |
| GATGGGGATGCATCCTTGCA+TGG | 0.562235 | 7.3:+1572395 | None:intergenic |
| ATTTCATGCAAACTGCTCCC+TGG | 0.562571 | 7.3:-1557945 | MS.gene050589:CDS |
| GCAGTTCTTAATATATGAGG+TGG | 0.563384 | 7.3:-1567332 | MS.gene050589:CDS |
| GATGCAGCGGTGTGATACAC+TGG | 0.563910 | 7.3:-1570670 | MS.gene050589:CDS |
| ATTGGAGCAAAGAGGTCAAA+GGG | 0.565479 | 7.3:-1572508 | MS.gene050589:CDS |
| GACATGATGTGGAAAGAAGC+AGG | 0.566986 | 7.3:+1557799 | None:intergenic |
| TCACGAGGTGGAAGCTCGTG+AGG | 0.569020 | 7.3:+1573556 | None:intergenic |
| GTACTCGAGTCGCCAAACTC+TGG | 0.569305 | 7.3:-1565914 | MS.gene050589:CDS |
| CTCGTTTAAGCACCTTTCTG+TGG | 0.569894 | 7.3:+1555559 | None:intergenic |
| TCTCTCCACATTCTCGCTTG+AGG | 0.571498 | 7.3:-1578491 | MS.gene050589:intron |
| GAATGTGGAGAGAGCTGCAA+TGG | 0.573676 | 7.3:+1578501 | None:intergenic |
| CGCAGAAGAAAGGAAAGCAC+TGG | 0.574653 | 7.3:-1570730 | MS.gene050589:CDS |
| GGCTTAGCAGAGGGTATGGA+GGG | 0.575642 | 7.3:+1563073 | None:intergenic |
| TCAGTTGATACCCACACTCC+AGG | 0.576681 | 7.3:+1577289 | None:intergenic |
| ATTACAAAAGTTGGGCAGCA+AGG | 0.576701 | 7.3:-1565415 | MS.gene050589:intron |
| TCAAGATCTGTGTGCCATAG+TGG | 0.576777 | 7.3:-1563657 | MS.gene050589:intron |
| ATGTGGAAAGAAGCAGGTGA+TGG | 0.577795 | 7.3:+1557805 | None:intergenic |
| GCAGACCTGAGCAGCAGTTG+GGG | 0.578169 | 7.3:+1569219 | None:intergenic |
| GTGAGCTACATAAAGAGTGT+TGG | 0.579294 | 7.3:-1570699 | MS.gene050589:CDS |
| TACCCAAGAGGGAAAGGAGA+TGG | 0.582551 | 7.3:-1576914 | MS.gene050589:CDS |
| TTTGATACCGTGAAGAACCT+CGG | 0.582928 | 7.3:+1559952 | None:intergenic |
| AGGTGCAAGGACCTGGAGTG+TGG | 0.585434 | 7.3:-1577300 | MS.gene050589:CDS |
| GTTCGATATATGATCAAGAA+GGG | 0.586956 | 7.3:+1561894 | None:intergenic |
| ACACATTAGCTTCTATGTTG+CGG | 0.588293 | 7.3:-1570593 | MS.gene050589:CDS |
| TTTGAAACTCTGCCACAGAA+AGG | 0.588739 | 7.3:-1555571 | MS.gene050589:CDS |
| GATTGGAGCAAAGAGGTCAA+AGG | 0.590296 | 7.3:-1572509 | MS.gene050589:CDS |
| AGGACTACTTGATTGTACTT+GGG | 0.590625 | 7.3:+1556158 | None:intergenic |
| GAGGTGCTGGAAGGGTGAGA+AGG | 0.591965 | 7.3:+1573575 | None:intergenic |
| TATTGTTTCCCATAAAGCAT+CGG | 0.595139 | 7.3:+1570644 | None:intergenic |
| CTGGGAGATTCAGTTGCTTG+GGG | 0.595874 | 7.3:-1556129 | MS.gene050589:CDS |
| AGGCTTAGCAGAGGGTATGG+AGG | 0.598674 | 7.3:+1563072 | None:intergenic |
| GAGCTACAGTCCTCACAACA+TGG | 0.599647 | 7.3:-1569286 | MS.gene050589:CDS |
| TTGTTGTTGAAGTCCACCGA+TGG | 0.600121 | 7.3:-1572542 | MS.gene050589:CDS |
| CTATCTCCACCATCTTGAGA+AGG | 0.600165 | 7.3:+1557886 | None:intergenic |
| AAGTGCAAAGTCCAATTCCA+AGG | 0.602650 | 7.3:+1574193 | None:intergenic |
| ACAGCGAGTCTCTGTACAAG+AGG | 0.603908 | 7.3:-1574097 | MS.gene050589:CDS |
| GCAAAACACGCAAAAGAATG+TGG | 0.604608 | 7.3:+1574156 | None:intergenic |
| AATAAGCCAAGGTAATGAGC+GGG | 0.605222 | 7.3:+1561921 | None:intergenic |
| CCAATCAACATCAGAACCAT+CGG | 0.605251 | 7.3:+1572526 | None:intergenic |
| TGCGAAGTTTGATAACTGAA+CGG | 0.606381 | 7.3:-1563733 | MS.gene050589:CDS |
| TGATGTTGATTGGAGCAAAG+AGG | 0.608652 | 7.3:-1572516 | MS.gene050589:CDS |
| TGTAGAATATTGTGATGTTG+CGG | 0.609687 | 7.3:-1577076 | MS.gene050589:intron |
| GCATTTGGGAACAATGTGCA+TGG | 0.610826 | 7.3:-1572430 | MS.gene050589:CDS |
| AATTCAGCGATGGCAAGCAT+CGG | 0.613290 | 7.3:-1576198 | MS.gene050589:CDS |
| GCATGCGCTATTAAGCAAAG+TGG | 0.618375 | 7.3:-1555637 | MS.gene050589:CDS |
| GGTGCAAGGACCTGGAGTGT+GGG | 0.619986 | 7.3:-1577299 | MS.gene050589:CDS |
| GGTGGTAACCTTAGAAGACC+AGG | 0.620410 | 7.3:-1567304 | MS.gene050589:CDS |
| TGGTCTTCTAAGGTTACCAC+CGG | 0.620451 | 7.3:+1567306 | None:intergenic |
| AACGTTGAGTAGTATTGCAG+AGG | 0.621417 | 7.3:+1563131 | None:intergenic |
| ATGGGAAACAATACATGCTG+AGG | 0.621763 | 7.3:-1570634 | MS.gene050589:CDS |
| TGTTAAAGAACATCTTAACT+GGG | 0.623750 | 7.3:-1559996 | MS.gene050589:CDS |
| ATATATGAGGTGGTTTCCGG+TGG | 0.625903 | 7.3:-1567322 | MS.gene050589:CDS |
| AGAAGGGCTCTAATAAGCCA+AGG | 0.625984 | 7.3:+1561910 | None:intergenic |
| ATATTACCTTCTCAAGATGG+TGG | 0.626247 | 7.3:-1557892 | MS.gene050589:CDS |
| AGAGGGAAAGGAGATGGCAT+CGG | 0.627940 | 7.3:-1576908 | MS.gene050589:CDS |
| GGCAAGACACTGATTCAATG+AGG | 0.628759 | 7.3:-1575066 | MS.gene050589:CDS |
| ATTCAGGATACTTATTTACA+CGG | 0.631180 | 7.3:+1574810 | None:intergenic |
| TCACACAAGTTAGTGGTCAG+TGG | 0.632860 | 7.3:-1575087 | MS.gene050589:CDS |
| TCTTGATCATATATCGAACA+AGG | 0.634167 | 7.3:-1561890 | MS.gene050589:intron |
| GCAAGACACTGATTCAATGA+GGG | 0.635984 | 7.3:-1575065 | MS.gene050589:CDS |
| TGTGGAAAGAAGCAGGTGAT+GGG | 0.637813 | 7.3:+1557806 | None:intergenic |
| AAGCTCGTGAGGTGCTGGAA+GGG | 0.638756 | 7.3:+1573567 | None:intergenic |
| GATGAGCAACCAGAGGTGCA+AGG | 0.638870 | 7.3:-1577313 | MS.gene050589:CDS |
| ACACAATCCACCAACATCCA+GGG | 0.642020 | 7.3:+1565935 | None:intergenic |
| ATCAACATCAGAACCATCGG+TGG | 0.649979 | 7.3:+1572529 | None:intergenic |
| ATACAGACTATCTCTGTCAG+AGG | 0.653182 | 7.3:-1577052 | MS.gene050589:CDS |
| GTTTGCGTGAAATTCAGCGA+TGG | 0.656154 | 7.3:-1576208 | MS.gene050589:CDS |
| TAACCCACTTGCCTTCACCC+TGG | 0.656715 | 7.3:+1565215 | None:intergenic |
| AGACACTGATTCAATGAGGG+AGG | 0.658590 | 7.3:-1575062 | MS.gene050589:CDS |
| TAATAAGCCAAGGTAATGAG+CGG | 0.660283 | 7.3:+1561920 | None:intergenic |
| GTCGGCTAGAAAATGACACA+AGG | 0.661137 | 7.3:+1563418 | None:intergenic |
| TTGATGTGCAGCTACTTGGA+AGG | 0.664195 | 7.3:-1563766 | MS.gene050589:intron |
| GCAGAATTCTCTTACCCAAG+AGG | 0.666677 | 7.3:-1576926 | MS.gene050589:intron |
| AAAATTGGAGCTGAAAGCCG+AGG | 0.669779 | 7.3:-1559969 | MS.gene050589:CDS |
| CAGCGAGTCTCTGTACAAGA+GGG | 0.671083 | 7.3:-1574096 | MS.gene050589:CDS |
| TCAAGTAGTCCTGAAAGACT+GGG | 0.677230 | 7.3:-1556147 | MS.gene050589:CDS |
| TTCATAGTCAGAGAAAGATG+GGG | 0.681210 | 7.3:+1572379 | None:intergenic |
| ATTTAAAGAGACTGACAACA+GGG | 0.686515 | 7.3:+1557863 | None:intergenic |
| GAAACCAAGATCTGTCAATG+TGG | 0.690670 | 7.3:+1566229 | None:intergenic |
| CCGTTGCTTCAGCAACACCA+AGG | 0.692378 | 7.3:+1565835 | None:intergenic |
| GATTTCTACCGGATATACAG+TGG | 0.704938 | 7.3:-1556441 | MS.gene050589:CDS |
| TATGTAGGATGAGCAACCAG+AGG | 0.714879 | 7.3:-1577320 | MS.gene050589:intron |
| TCGGCTAGAAAATGACACAA+GGG | 0.725172 | 7.3:+1563419 | None:intergenic |
| GTGTTGGTTCTATGATGCAG+CGG | 0.740760 | 7.3:-1570683 | MS.gene050589:CDS |
| CTACAGTCCTCACAACATGG+AGG | 0.754848 | 7.3:-1569283 | MS.gene050589:CDS |
| GTGTGGGTATCAACTGAGAG+AGG | 0.755651 | 7.3:-1577283 | MS.gene050589:CDS |
| GGTAACCTTAGAAGACCAGG+CGG | 0.782891 | 7.3:-1567301 | MS.gene050589:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 1555564 | 1578545 | 1555564 | ID=MS.gene050589 |
| chr7.3 | mRNA | 1555564 | 1578545 | 1555564 | ID=MS.gene050589.t1;Parent=MS.gene050589 |
| chr7.3 | exon | 1578492 | 1578545 | 1578492 | ID=MS.gene050589.t1.exon1;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1578492 | 1578545 | 1578492 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1577263 | 1577335 | 1577263 | ID=MS.gene050589.t1.exon2;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1577263 | 1577335 | 1577263 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1577029 | 1577093 | 1577029 | ID=MS.gene050589.t1.exon3;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1577029 | 1577093 | 1577029 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1576867 | 1576944 | 1576867 | ID=MS.gene050589.t1.exon4;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1576867 | 1576944 | 1576867 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1576187 | 1576306 | 1576187 | ID=MS.gene050589.t1.exon5;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1576187 | 1576306 | 1576187 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1576003 | 1576073 | 1576003 | ID=MS.gene050589.t1.exon6;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1576003 | 1576073 | 1576003 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1575836 | 1575928 | 1575836 | ID=MS.gene050589.t1.exon7;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1575836 | 1575928 | 1575836 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1575045 | 1575114 | 1575045 | ID=MS.gene050589.t1.exon8;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1575045 | 1575114 | 1575045 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1574821 | 1574885 | 1574821 | ID=MS.gene050589.t1.exon9;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1574821 | 1574885 | 1574821 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1574064 | 1574259 | 1574064 | ID=MS.gene050589.t1.exon10;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1574064 | 1574259 | 1574064 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1573560 | 1573698 | 1573560 | ID=MS.gene050589.t1.exon11;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1573560 | 1573698 | 1573560 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1572676 | 1572773 | 1572676 | ID=MS.gene050589.t1.exon12;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1572676 | 1572773 | 1572676 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1572376 | 1572567 | 1572376 | ID=MS.gene050589.t1.exon13;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1572376 | 1572567 | 1572376 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1570561 | 1570772 | 1570561 | ID=MS.gene050589.t1.exon14;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1570561 | 1570772 | 1570561 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1569225 | 1569372 | 1569225 | ID=MS.gene050589.t1.exon15;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1569225 | 1569372 | 1569225 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1567197 | 1567365 | 1567197 | ID=MS.gene050589.t1.exon16;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1567197 | 1567365 | 1567197 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1566184 | 1566260 | 1566184 | ID=MS.gene050589.t1.exon17;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1566184 | 1566260 | 1566184 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1565808 | 1565978 | 1565808 | ID=MS.gene050589.t1.exon18;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1565808 | 1565978 | 1565808 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1565416 | 1565492 | 1565416 | ID=MS.gene050589.t1.exon19;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1565416 | 1565492 | 1565416 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1565227 | 1565329 | 1565227 | ID=MS.gene050589.t1.exon20;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1565227 | 1565329 | 1565227 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1563658 | 1563777 | 1563658 | ID=MS.gene050589.t1.exon21;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1563658 | 1563777 | 1563658 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1563407 | 1563550 | 1563407 | ID=MS.gene050589.t1.exon22;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1563407 | 1563550 | 1563407 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1563051 | 1563194 | 1563051 | ID=MS.gene050589.t1.exon23;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1563051 | 1563194 | 1563051 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1561891 | 1562034 | 1561891 | ID=MS.gene050589.t1.exon24;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1561891 | 1562034 | 1561891 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1560817 | 1560904 | 1560817 | ID=MS.gene050589.t1.exon25;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1560817 | 1560904 | 1560817 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1559904 | 1560031 | 1559904 | ID=MS.gene050589.t1.exon26;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1559904 | 1560031 | 1559904 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1557779 | 1557986 | 1557779 | ID=MS.gene050589.t1.exon27;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1557779 | 1557986 | 1557779 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1556431 | 1556603 | 1556431 | ID=MS.gene050589.t1.exon28;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1556431 | 1556603 | 1556431 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1555990 | 1556199 | 1555990 | ID=MS.gene050589.t1.exon29;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1555990 | 1556199 | 1555990 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| chr7.3 | exon | 1555564 | 1555758 | 1555564 | ID=MS.gene050589.t1.exon30;Parent=MS.gene050589.t1 |
| chr7.3 | CDS | 1555564 | 1555758 | 1555564 | ID=cds.MS.gene050589.t1;Parent=MS.gene050589.t1 |
| Gene Sequence |
| Protein sequence |
