Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37831.t1 | XP_003617084.1 | 88.2 | 262 | 24 | 1 | 1 | 262 | 1 | 255 | 2.80E-107 | 398.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37831.t1 | Q9ZVD2 | 43.4 | 267 | 139 | 3 | 1 | 262 | 1 | 260 | 4.7e-55 | 216.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37831.t1 | G7K2X8 | 88.2 | 262 | 24 | 1 | 1 | 262 | 1 | 255 | 2.0e-107 | 398.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05240 | MS.gene37831 | 0.803803 | 2.93E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37831.t1 | MTR_5g087760 | 89.695 | 262 | 20 | 1 | 1 | 262 | 1 | 255 | 5.09e-169 | 467 |
MS.gene37831.t1 | MTR_3g078800 | 61.069 | 262 | 91 | 3 | 1 | 261 | 1 | 252 | 3.82e-103 | 301 |
MS.gene37831.t1 | MTR_2g012550 | 54.307 | 267 | 113 | 6 | 1 | 261 | 1 | 264 | 4.93e-94 | 278 |
MS.gene37831.t1 | MTR_3g078810 | 59.712 | 139 | 53 | 2 | 116 | 253 | 1 | 137 | 2.06e-54 | 172 |
MS.gene37831.t1 | MTR_3g078820 | 47.236 | 199 | 101 | 2 | 57 | 255 | 6 | 200 | 9.20e-53 | 171 |
MS.gene37831.t1 | MTR_1g077560 | 33.208 | 265 | 150 | 6 | 3 | 261 | 7 | 250 | 1.29e-35 | 127 |
MS.gene37831.t1 | MTR_5g076170 | 32.028 | 281 | 153 | 6 | 1 | 261 | 1 | 263 | 1.19e-33 | 123 |
MS.gene37831.t1 | MTR_3g074150 | 28.151 | 238 | 147 | 5 | 34 | 258 | 28 | 254 | 5.48e-30 | 113 |
MS.gene37831.t1 | MTR_3g063310 | 36.207 | 174 | 100 | 4 | 93 | 261 | 85 | 252 | 5.33e-26 | 102 |
MS.gene37831.t1 | MTR_8g090320 | 28.634 | 227 | 136 | 7 | 36 | 254 | 43 | 251 | 2.25e-24 | 98.6 |
MS.gene37831.t1 | MTR_2g100060 | 29.801 | 151 | 101 | 3 | 89 | 238 | 77 | 223 | 1.89e-18 | 82.4 |
MS.gene37831.t1 | MTR_3g104460 | 26.768 | 198 | 134 | 6 | 71 | 261 | 58 | 251 | 8.77e-18 | 80.9 |
MS.gene37831.t1 | MTR_2g011350 | 28.000 | 150 | 104 | 2 | 88 | 237 | 35 | 180 | 8.97e-17 | 77.0 |
MS.gene37831.t1 | MTR_8g016370 | 25.604 | 207 | 123 | 4 | 59 | 262 | 45 | 223 | 3.79e-16 | 75.5 |
MS.gene37831.t1 | MTR_7g106050 | 29.143 | 175 | 115 | 4 | 63 | 237 | 12 | 177 | 5.00e-15 | 72.4 |
MS.gene37831.t1 | MTR_7g106010 | 28.205 | 195 | 128 | 5 | 61 | 248 | 21 | 210 | 1.64e-14 | 71.2 |
MS.gene37831.t1 | MTR_7g106000 | 25.581 | 215 | 140 | 7 | 48 | 256 | 18 | 218 | 9.38e-14 | 68.9 |
MS.gene37831.t1 | MTR_2g086790 | 27.027 | 185 | 117 | 4 | 62 | 237 | 12 | 187 | 4.90e-13 | 67.0 |
MS.gene37831.t1 | MTR_4g119428 | 25.281 | 178 | 121 | 4 | 72 | 241 | 43 | 216 | 1.60e-12 | 65.9 |
MS.gene37831.t1 | MTR_7g106120 | 27.083 | 192 | 112 | 6 | 73 | 239 | 14 | 202 | 3.31e-12 | 64.3 |
MS.gene37831.t1 | MTR_1g057270 | 26.174 | 149 | 105 | 3 | 94 | 241 | 74 | 218 | 6.69e-11 | 61.2 |
MS.gene37831.t1 | MTR_7g118270 | 22.619 | 168 | 123 | 3 | 77 | 242 | 46 | 208 | 8.05e-11 | 60.8 |
MS.gene37831.t1 | MTR_7g106100 | 24.503 | 151 | 100 | 4 | 74 | 215 | 70 | 215 | 9.54e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37831.t1 | AT2G27080 | 49.438 | 267 | 123 | 3 | 1 | 262 | 1 | 260 | 3.15e-94 | 278 |
MS.gene37831.t1 | AT2G27080 | 49.438 | 267 | 123 | 3 | 1 | 262 | 1 | 260 | 3.15e-94 | 278 |
MS.gene37831.t1 | AT5G21130 | 43.348 | 233 | 125 | 3 | 31 | 261 | 53 | 280 | 6.14e-70 | 217 |
MS.gene37831.t1 | AT1G65690 | 35.638 | 188 | 108 | 5 | 80 | 261 | 72 | 252 | 1.17e-32 | 120 |
MS.gene37831.t1 | AT5G36970 | 34.328 | 201 | 127 | 2 | 63 | 261 | 51 | 248 | 8.38e-32 | 117 |
MS.gene37831.t1 | AT1G54540 | 38.191 | 199 | 115 | 4 | 67 | 261 | 45 | 239 | 2.00e-30 | 114 |
MS.gene37831.t1 | AT2G35980 | 31.771 | 192 | 123 | 4 | 48 | 238 | 16 | 200 | 3.61e-24 | 97.4 |
MS.gene37831.t1 | AT2G22180 | 29.060 | 234 | 136 | 8 | 30 | 255 | 74 | 285 | 1.33e-23 | 97.1 |
MS.gene37831.t1 | AT3G11650 | 27.136 | 199 | 132 | 4 | 49 | 238 | 19 | 213 | 5.70e-19 | 83.6 |
MS.gene37831.t1 | AT5G22870 | 28.261 | 184 | 124 | 3 | 74 | 255 | 26 | 203 | 1.38e-18 | 82.0 |
MS.gene37831.t1 | AT5G06320 | 28.655 | 171 | 114 | 5 | 74 | 241 | 45 | 210 | 1.75e-15 | 73.9 |
MS.gene37831.t1 | AT3G52470 | 24.713 | 174 | 117 | 3 | 71 | 242 | 20 | 181 | 6.67e-13 | 66.2 |
MS.gene37831.t1 | AT5G11890 | 25.000 | 252 | 175 | 5 | 1 | 238 | 1 | 252 | 2.14e-12 | 66.2 |
MS.gene37831.t1 | AT1G17620 | 27.935 | 247 | 146 | 9 | 3 | 238 | 4 | 229 | 8.94e-12 | 63.9 |
MS.gene37831.t1 | AT2G35460 | 25.143 | 175 | 124 | 5 | 71 | 241 | 45 | 216 | 1.11e-11 | 63.5 |
MS.gene37831.t1 | AT4G01410 | 28.659 | 164 | 108 | 4 | 79 | 239 | 46 | 203 | 2.30e-11 | 62.4 |
MS.gene37831.t1 | AT5G22200 | 26.506 | 166 | 116 | 2 | 96 | 261 | 43 | 202 | 3.59e-11 | 61.6 |
Find 67 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATTCCAATCTTGTGATTA+GGG | 0.231496 | 5.3:+70546951 | None:intergenic |
GGCTTATCTAACGGTGGTTT+TGG | 0.234163 | 5.3:+70547304 | None:intergenic |
CTGATTCCAATCTTGTGATT+AGG | 0.250708 | 5.3:+70546950 | None:intergenic |
GTCATTGCTGCTGCCTTTGC+TGG | 0.267823 | 5.3:-70547162 | MS.gene37831:CDS |
ATGGTGTAGTTCGGTGCTTT+TGG | 0.309047 | 5.3:+70547067 | None:intergenic |
CATCTCTTTATAGAAGATTT+CGG | 0.331806 | 5.3:+70546907 | None:intergenic |
ATCGAAAACATCACCATTAG+AGG | 0.339924 | 5.3:-70547046 | MS.gene37831:CDS |
TAAACGAGAAGTGACGTTAA+TGG | 0.340851 | 5.3:-70546753 | MS.gene37831:CDS |
AACACTGTTACATTATTTGA+CGG | 0.363072 | 5.3:+70546848 | None:intergenic |
AATCTTGTGATTAGGGTTAT+CGG | 0.367452 | 5.3:+70546958 | None:intergenic |
GTGTTCAAGACAATGTTAAA+AGG | 0.381751 | 5.3:-70546830 | MS.gene37831:CDS |
TAAGTTCCCGGCGGTGGAAC+AGG | 0.404224 | 5.3:+70547283 | None:intergenic |
TAAAGTTGATTGCGATTTGA+TGG | 0.411283 | 5.3:-70546669 | MS.gene37831:CDS |
GGTTATGTTGATTCCTCTAA+TGG | 0.420063 | 5.3:+70547033 | None:intergenic |
CAAATCGCAATCAACTTTAA+CGG | 0.421844 | 5.3:+70546673 | None:intergenic |
GCGGCGGATTGTGGAGAAAC+TGG | 0.429541 | 5.3:+70547334 | None:intergenic |
TGCTGCCTTTGCTGGTTCAT+CGG | 0.431687 | 5.3:-70547154 | MS.gene37831:CDS |
GATAACCCTAATCACAAGAT+TGG | 0.436995 | 5.3:-70546956 | MS.gene37831:CDS |
ACCTCACTGTTGTCCACGAC+AGG | 0.448576 | 5.3:-70547013 | MS.gene37831:CDS |
AGAAACTGGTGGTGAGTCAC+GGG | 0.452693 | 5.3:+70547348 | None:intergenic |
CATTCTCCGGTGGAGGGACT+CGG | 0.452912 | 5.3:+70547230 | None:intergenic |
TTCATCCTCATCATGCTCCT+TGG | 0.458150 | 5.3:-70547124 | MS.gene37831:CDS |
CGGCGAGCATTCTCCGGTGG+AGG | 0.473377 | 5.3:+70547223 | None:intergenic |
ATCTTGATGACATAAGTTCC+CGG | 0.485787 | 5.3:+70547271 | None:intergenic |
ATGCTCCTTGGCATTGCAGC+CGG | 0.491043 | 5.3:-70547112 | MS.gene37831:CDS |
ATGACATAAGTTCCCGGCGG+TGG | 0.504442 | 5.3:+70547277 | None:intergenic |
GAGAAACTGGTGGTGAGTCA+CGG | 0.515282 | 5.3:+70547347 | None:intergenic |
TCGTAACGGCGAGCATTCTC+CGG | 0.518381 | 5.3:+70547217 | None:intergenic |
ACTCGGTGGACTATGTCCTT+AGG | 0.520498 | 5.3:+70547247 | None:intergenic |
AGATAAGCCTGTTCCACCGC+CGG | 0.526866 | 5.3:-70547290 | MS.gene37831:CDS |
GATAAGCCTGTTCCACCGCC+GGG | 0.528742 | 5.3:-70547289 | MS.gene37831:CDS |
GGAGCAACAGCGGCGGATTG+TGG | 0.531844 | 5.3:+70547325 | None:intergenic |
TGCGTGTGTATTGTTCGTAA+CGG | 0.546416 | 5.3:+70547203 | None:intergenic |
AGCAAAGGCAGCAGCAATGA+CGG | 0.576642 | 5.3:+70547164 | None:intergenic |
GAAAACAAGGTAGAAAATGC+CGG | 0.582323 | 5.3:+70547093 | None:intergenic |
AAATGCCGGCTGCAATGCCA+AGG | 0.584053 | 5.3:+70547107 | None:intergenic |
AGCGCCGGTGAAAATAAAAG+TGG | 0.592248 | 5.3:-70546720 | MS.gene37831:CDS |
AGATCAAAGAGCGTTGGTGA+AGG | 0.593051 | 5.3:-70546783 | MS.gene37831:CDS |
GGCGAGCATTCTCCGGTGGA+GGG | 0.596412 | 5.3:+70547224 | None:intergenic |
AATGGTTAAATTGAGAGCGC+CGG | 0.596689 | 5.3:-70546735 | MS.gene37831:CDS |
AAAGAGATGAGGCTATGTAA+TGG | 0.597661 | 5.3:-70546893 | MS.gene37831:CDS |
AGCAGCAATGACGGTTCCGA+CGG | 0.601585 | 5.3:+70547173 | None:intergenic |
AGTTGATTGCGATTTGATGG+TGG | 0.603935 | 5.3:-70546666 | MS.gene37831:CDS |
TTATGTCATCAAGATTCCTA+AGG | 0.604429 | 5.3:-70547263 | MS.gene37831:CDS |
TCTCCGGTGGAGGGACTCGG+TGG | 0.608992 | 5.3:+70547233 | None:intergenic |
AAGTGGGGTCTGTTAAGACA+TGG | 0.609710 | 5.3:-70546703 | MS.gene37831:CDS |
TTATTCCGATGAACCAGCAA+AGG | 0.611947 | 5.3:+70547149 | None:intergenic |
GAAACTGGTGGTGAGTCACG+GGG | 0.614394 | 5.3:+70547349 | None:intergenic |
TTTACAGTGACGTCAAACTC+CGG | 0.615574 | 5.3:+70546983 | None:intergenic |
AGTCCACCGAGTCCCTCCAC+CGG | 0.620496 | 5.3:-70547236 | MS.gene37831:CDS |
CAGTGAAGATCAAAGAGCGT+TGG | 0.620928 | 5.3:-70546789 | MS.gene37831:CDS |
CTCCGGTGAGATCCCTGTCG+TGG | 0.623676 | 5.3:+70547000 | None:intergenic |
GCGCCGGTGAAAATAAAAGT+GGG | 0.634072 | 5.3:-70546719 | MS.gene37831:CDS |
TAACGGCGAGCATTCTCCGG+TGG | 0.646544 | 5.3:+70547220 | None:intergenic |
CCTCACTGTTGTCCACGACA+GGG | 0.650110 | 5.3:-70547012 | MS.gene37831:CDS |
GTCCACGACAGGGATCTCAC+CGG | 0.654940 | 5.3:-70547002 | MS.gene37831:CDS |
TTTGACGGTTGATAAAACGA+TGG | 0.657071 | 5.3:+70546863 | None:intergenic |
AAATCTTCTATAAAGAGATG+AGG | 0.660204 | 5.3:-70546904 | MS.gene37831:CDS |
GGTGGAACAGGCTTATCTAA+CGG | 0.662632 | 5.3:+70547295 | None:intergenic |
CAATGCCAAGGAGCATGATG+AGG | 0.666644 | 5.3:+70547119 | None:intergenic |
CCCTGTCGTGGACAACAGTG+AGG | 0.678683 | 5.3:+70547012 | None:intergenic |
GGAACAGGCTTATCTAACGG+TGG | 0.681818 | 5.3:+70547298 | None:intergenic |
CGCCGGTGAAAATAAAAGTG+GGG | 0.685150 | 5.3:-70546718 | MS.gene37831:CDS |
AAACTGGTGGTGAGTCACGG+GGG | 0.699574 | 5.3:+70547350 | None:intergenic |
ACACACGCAAGAAACACCGT+CGG | 0.735673 | 5.3:-70547189 | MS.gene37831:CDS |
GCGGATTGTGGAGAAACTGG+TGG | 0.763624 | 5.3:+70547337 | None:intergenic |
TTGATGACATAAGTTCCCGG+CGG | 0.819842 | 5.3:+70547274 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAATCTTCTATAAAGAGATG+AGG | - | chr5.3:70547064-70547083 | MS.gene37831:CDS | 25.0% |
! | AACACTGTTACATTATTTGA+CGG | + | chr5.3:70547123-70547142 | None:intergenic | 25.0% |
! | CATCTCTTTATAGAAGATTT+CGG | + | chr5.3:70547064-70547083 | None:intergenic | 25.0% |
!!! | TAAGAGTTGTACTTTTAAAG+TGG | - | chr5.3:70547356-70547375 | MS.gene37831:CDS | 25.0% |
AATCTTGTGATTAGGGTTAT+CGG | + | chr5.3:70547013-70547032 | None:intergenic | 30.0% | |
CAAATCGCAATCAACTTTAA+CGG | + | chr5.3:70547298-70547317 | None:intergenic | 30.0% | |
GTGTTCAAGACAATGTTAAA+AGG | - | chr5.3:70547138-70547157 | MS.gene37831:CDS | 30.0% | |
TGATTCCAATCTTGTGATTA+GGG | + | chr5.3:70547020-70547039 | None:intergenic | 30.0% | |
TTATGTCATCAAGATTCCTA+AGG | - | chr5.3:70546705-70546724 | MS.gene37831:CDS | 30.0% | |
! | TAAAGTTGATTGCGATTTGA+TGG | - | chr5.3:70547299-70547318 | MS.gene37831:CDS | 30.0% |
!!! | GTACTTTTAAAGTGGATCTT+TGG | - | chr5.3:70547364-70547383 | MS.gene37831:CDS | 30.0% |
AAAGAGATGAGGCTATGTAA+TGG | - | chr5.3:70547075-70547094 | MS.gene37831:CDS | 35.0% | |
ATCGAAAACATCACCATTAG+AGG | - | chr5.3:70546922-70546941 | MS.gene37831:CDS | 35.0% | |
CTGATTCCAATCTTGTGATT+AGG | + | chr5.3:70547021-70547040 | None:intergenic | 35.0% | |
GAAAACAAGGTAGAAAATGC+CGG | + | chr5.3:70546878-70546897 | None:intergenic | 35.0% | |
GATAACCCTAATCACAAGAT+TGG | - | chr5.3:70547012-70547031 | MS.gene37831:CDS | 35.0% | |
TAAACGAGAAGTGACGTTAA+TGG | - | chr5.3:70547215-70547234 | MS.gene37831:CDS | 35.0% | |
! | ATCTTGATGACATAAGTTCC+CGG | + | chr5.3:70546700-70546719 | None:intergenic | 35.0% |
! | ATGTTTTCGATGGTGTAGTT+CGG | + | chr5.3:70546913-70546932 | None:intergenic | 35.0% |
!! | GGTTATGTTGATTCCTCTAA+TGG | + | chr5.3:70546938-70546957 | None:intergenic | 35.0% |
!! | TCTAATGGTGATGTTTTCGA+TGG | + | chr5.3:70546923-70546942 | None:intergenic | 35.0% |
!! | TTTGACGGTTGATAAAACGA+TGG | + | chr5.3:70547108-70547127 | None:intergenic | 35.0% |
AGTTGATTGCGATTTGATGG+TGG | - | chr5.3:70547302-70547321 | MS.gene37831:CDS | 40.0% | |
TGCGTGTGTATTGTTCGTAA+CGG | + | chr5.3:70546768-70546787 | None:intergenic | 40.0% | |
TTATTCCGATGAACCAGCAA+AGG | + | chr5.3:70546822-70546841 | None:intergenic | 40.0% | |
TTTACAGTGACGTCAAACTC+CGG | + | chr5.3:70546988-70547007 | None:intergenic | 40.0% | |
! | AATGGTTAAATTGAGAGCGC+CGG | - | chr5.3:70547233-70547252 | MS.gene37831:CDS | 40.0% |
!!! | GACCCCACTTTTATTTTCAC+CGG | + | chr5.3:70547255-70547274 | None:intergenic | 40.0% |
AAGTGGGGTCTGTTAAGACA+TGG | - | chr5.3:70547265-70547284 | MS.gene37831:CDS | 45.0% | |
CGCCGGTGAAAATAAAAGTG+GGG | - | chr5.3:70547250-70547269 | MS.gene37831:CDS | 45.0% | |
GGTGGAACAGGCTTATCTAA+CGG | + | chr5.3:70546676-70546695 | None:intergenic | 45.0% | |
TTCATCCTCATCATGCTCCT+TGG | - | chr5.3:70546844-70546863 | MS.gene37831:CDS | 45.0% | |
! | CAGTGAAGATCAAAGAGCGT+TGG | - | chr5.3:70547179-70547198 | MS.gene37831:CDS | 45.0% |
! | GCGCCGGTGAAAATAAAAGT+GGG | - | chr5.3:70547249-70547268 | MS.gene37831:CDS | 45.0% |
! | GGCTTATCTAACGGTGGTTT+TGG | + | chr5.3:70546667-70546686 | None:intergenic | 45.0% |
! | TTGATGACATAAGTTCCCGG+CGG | + | chr5.3:70546697-70546716 | None:intergenic | 45.0% |
!! | AGATCAAAGAGCGTTGGTGA+AGG | - | chr5.3:70547185-70547204 | MS.gene37831:CDS | 45.0% |
!! | AGCGCCGGTGAAAATAAAAG+TGG | - | chr5.3:70547248-70547267 | MS.gene37831:CDS | 45.0% |
!!! | ATGGTGTAGTTCGGTGCTTT+TGG | + | chr5.3:70546904-70546923 | None:intergenic | 45.0% |
!!! | TGGTGTAGTTCGGTGCTTTT+GGG | + | chr5.3:70546903-70546922 | None:intergenic | 45.0% |
ACACACGCAAGAAACACCGT+CGG | - | chr5.3:70546779-70546798 | MS.gene37831:CDS | 50.0% | |
AGCAAAGGCAGCAGCAATGA+CGG | + | chr5.3:70546807-70546826 | None:intergenic | 50.0% | |
GGAACAGGCTTATCTAACGG+TGG | + | chr5.3:70546673-70546692 | None:intergenic | 50.0% | |
! | AGAAACTGGTGGTGAGTCAC+GGG | + | chr5.3:70546623-70546642 | None:intergenic | 50.0% |
! | CAATGCCAAGGAGCATGATG+AGG | + | chr5.3:70546852-70546871 | None:intergenic | 50.0% |
! | GAGAAACTGGTGGTGAGTCA+CGG | + | chr5.3:70546624-70546643 | None:intergenic | 50.0% |
! | GTGCTTTTGGGCGGAAAACA+AGG | + | chr5.3:70546891-70546910 | None:intergenic | 50.0% |
!! | ACTCGGTGGACTATGTCCTT+AGG | + | chr5.3:70546724-70546743 | None:intergenic | 50.0% |
!! | TGCTGCCTTTGCTGGTTCAT+CGG | - | chr5.3:70546814-70546833 | MS.gene37831:CDS | 50.0% |
!!! | TGTAGTTCGGTGCTTTTGGG+CGG | + | chr5.3:70546900-70546919 | None:intergenic | 50.0% |
ACCTCACTGTTGTCCACGAC+AGG | - | chr5.3:70546955-70546974 | MS.gene37831:CDS | 55.0% | |
AGATAAGCCTGTTCCACCGC+CGG | - | chr5.3:70546678-70546697 | MS.gene37831:CDS | 55.0% | |
AGCAGCAATGACGGTTCCGA+CGG | + | chr5.3:70546798-70546817 | None:intergenic | 55.0% | |
ATGACATAAGTTCCCGGCGG+TGG | + | chr5.3:70546694-70546713 | None:intergenic | 55.0% | |
ATGCTCCTTGGCATTGCAGC+CGG | - | chr5.3:70546856-70546875 | MS.gene37831:CDS | 55.0% | |
CCTCACTGTTGTCCACGACA+GGG | - | chr5.3:70546956-70546975 | MS.gene37831:CDS | 55.0% | |
GTCATTGCTGCTGCCTTTGC+TGG | - | chr5.3:70546806-70546825 | MS.gene37831:CDS | 55.0% | |
TCGTAACGGCGAGCATTCTC+CGG | + | chr5.3:70546754-70546773 | None:intergenic | 55.0% | |
! | AAACTGGTGGTGAGTCACGG+GGG | + | chr5.3:70546621-70546640 | None:intergenic | 55.0% |
! | AAATGCCGGCTGCAATGCCA+AGG | + | chr5.3:70546864-70546883 | None:intergenic | 55.0% |
! | GAAACTGGTGGTGAGTCACG+GGG | + | chr5.3:70546622-70546641 | None:intergenic | 55.0% |
! | GCGGATTGTGGAGAAACTGG+TGG | + | chr5.3:70546634-70546653 | None:intergenic | 55.0% |
!!! | CGGTGGTTTTGGAGCAACAG+CGG | + | chr5.3:70546656-70546675 | None:intergenic | 55.0% |
!!! | TGGTTTTGGAGCAACAGCGG+CGG | + | chr5.3:70546653-70546672 | None:intergenic | 55.0% |
CATTCTCCGGTGGAGGGACT+CGG | + | chr5.3:70546741-70546760 | None:intergenic | 60.0% | |
CCCTGTCGTGGACAACAGTG+AGG | + | chr5.3:70546959-70546978 | None:intergenic | 60.0% | |
GATAAGCCTGTTCCACCGCC+GGG | - | chr5.3:70546679-70546698 | MS.gene37831:CDS | 60.0% | |
GTCCACGACAGGGATCTCAC+CGG | - | chr5.3:70546966-70546985 | MS.gene37831:CDS | 60.0% | |
GTGAGTCACGGGGGTGAACA+CGG | + | chr5.3:70546612-70546631 | None:intergenic | 60.0% | |
TAACGGCGAGCATTCTCCGG+TGG | + | chr5.3:70546751-70546770 | None:intergenic | 60.0% | |
TAAGTTCCCGGCGGTGGAAC+AGG | + | chr5.3:70546688-70546707 | None:intergenic | 60.0% | |
!! | GCGGCGGATTGTGGAGAAAC+TGG | + | chr5.3:70546637-70546656 | None:intergenic | 60.0% |
AGTCCACCGAGTCCCTCCAC+CGG | - | chr5.3:70546732-70546751 | MS.gene37831:CDS | 65.0% | |
CTCCGGTGAGATCCCTGTCG+TGG | + | chr5.3:70546971-70546990 | None:intergenic | 65.0% | |
GGCGAGCATTCTCCGGTGGA+GGG | + | chr5.3:70546747-70546766 | None:intergenic | 65.0% | |
!! | GGAGCAACAGCGGCGGATTG+TGG | + | chr5.3:70546646-70546665 | None:intergenic | 65.0% |
CGGCGAGCATTCTCCGGTGG+AGG | + | chr5.3:70546748-70546767 | None:intergenic | 70.0% | |
TCTCCGGTGGAGGGACTCGG+TGG | + | chr5.3:70546738-70546757 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 70546601 | 70547389 | 70546601 | ID=MS.gene37831 |
chr5.3 | mRNA | 70546601 | 70547389 | 70546601 | ID=MS.gene37831.t1;Parent=MS.gene37831 |
chr5.3 | exon | 70546601 | 70547389 | 70546601 | ID=MS.gene37831.t1.exon1;Parent=MS.gene37831.t1 |
chr5.3 | CDS | 70546601 | 70547389 | 70546601 | ID=cds.MS.gene37831.t1;Parent=MS.gene37831.t1 |
Gene Sequence |
Protein sequence |