AlfalfaGEDB | MS.gene05240

M. sativa cultivar XinJiangDaYe / MS.gene05240

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004553 GO:0005975 GO:0008150 GO:0008152 GO:0016787 GO:0016798 GO:0044238 GO:0071704
PFAM: PF00232.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05240.t1	XP_003620196.2	94.2	447	26	0	13	459	76	522	9.40E-260	905.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05240.t1	B8AVF0	67.9	433	138	1	16	448	77	508	3.8e-185	649.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05240.t1	G7KKR8	94.2	447	26	0	13	459	76	522	6.8e-260	905.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene05240	-0.804123	2.51E-49	-1.69E-46
MS.gene049171	MS.gene05240	-0.812821	3.50E-51	-1.69E-46
MS.gene04926	MS.gene05240	0.802719	4.91E-49	-1.69E-46
MS.gene04932	MS.gene05240	0.818999	1.46E-52	-1.69E-46
MS.gene049549	MS.gene05240	0.84419	8.81E-59	-1.69E-46
MS.gene049609	MS.gene05240	-0.814777	1.30E-51	-1.69E-46
MS.gene049611	MS.gene05240	0.810431	1.16E-50	-1.69E-46
MS.gene049805	MS.gene05240	-0.814808	1.28E-51	-1.69E-46
MS.gene050096	MS.gene05240	0.825856	3.73E-54	-1.69E-46
MS.gene050381	MS.gene05240	0.807393	5.17E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000031	MS.gene05240	PPI
MS.gene002910	MS.gene05240	PPI
MS.gene002914	MS.gene05240	PPI
MS.gene005601	MS.gene05240	PPI
MS.gene006777	MS.gene05240	PPI
MS.gene006844	MS.gene05240	PPI
MS.gene00856	MS.gene05240	PPI
MS.gene00859	MS.gene05240	PPI
MS.gene009969	MS.gene05240	PPI
MS.gene012613	MS.gene05240	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene05240.t1	MTR_6g078380	94.183	447	26	0	13	459	76	522	862
MS.gene05240.t1	MTR_6g078450	83.973	443	70	1	13	455	76	517	800
MS.gene05240.t1	MTR_6g078330	76.510	447	104	1	13	459	77	522	724
MS.gene05240.t1	MTR_6g078450	84.334	383	59	1	13	395	76	457	692
MS.gene05240.t1	MTR_6g078330	76.850	419	96	1	41	459	1	418	683
MS.gene05240.t1	MTR_2g098520	70.805	435	126	1	16	450	77	510	664
MS.gene05240.t1	MTR_2g098790	70.046	434	129	1	16	449	81	513	655
MS.gene05240.t1	MTR_2g098540	69.885	435	130	1	16	450	74	507	654
MS.gene05240.t1	MTR_2g098540	69.885	435	130	1	16	450	30	463	652
MS.gene05240.t1	MTR_3g028720	69.037	436	134	1	16	451	81	515	650

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05240.t1	AT5G44640	56.064	437	185	3	16	451	74	504	0.0	519
MS.gene05240.t1	AT5G42260	57.209	430	177	3	16	444	74	497	0.0	517
MS.gene05240.t1	AT2G44450	55.046	436	190	2	16	451	74	503	3.00e-180	514
MS.gene05240.t1	AT2G44480	53.103	435	202	2	16	450	78	510	4.89e-176	503
MS.gene05240.t1	AT3G60130	56.092	435	184	3	16	449	73	501	1.90e-175	502
MS.gene05240.t1	AT2G44480	53.103	435	202	2	16	450	109	541	2.59e-175	503
MS.gene05240.t1	AT3G60130	55.769	416	177	3	35	449	40	449	1.48e-168	482
MS.gene05240.t1	AT1G47600	53.687	434	191	4	16	448	85	509	2.67e-166	478
MS.gene05240.t1	AT2G44480	52.927	410	191	2	41	450	1	408	3.10e-166	474
MS.gene05240.t1	AT1G26560	53.917	434	196	3	17	448	75	506	2.68e-165	476

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Find 95 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAGGACAGAAGTAA+TGG	0.467864	6.2:+77872375	MS.gene05240:CDS
AAACTTGTCAGATAAAATAA+AGG	0.429402	6.2:+77872362	MS.gene05240:CDS
AAATTTCAAAAGGGCAAGAT+AGG	0.333322	6.2:+77873833	MS.gene05240:CDS
AACAGGTCGTGAATACCCTT+TGG	0.468123	6.2:-77875262	None:intergenic
AACATAAGCATGCTTGGCGA+AGG	0.562738	6.2:-77873394	None:intergenic
AACATTAGTGTGTCACTGGA+CGG	0.604605	6.2:+77873859	MS.gene05240:CDS
AAGAATGTATTGCAGGTATA+TGG	0.303911	6.2:+77874606	MS.gene05240:intron
AAGTATTCTGGACCAAGAGA+TGG	0.559511	6.2:-77872598	None:intergenic
AAGTGCATCTGTGTTGTAGC+TGG	0.421551	6.2:-77874806	None:intergenic
AATCCTTTGTGTATCTTCAA+GGG	0.531343	6.2:-77875546	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTCAAAAGGGCAAGAT+AGG	+	chr6.2:77873833-77873852	MS.gene05240:CDS	30.0%
AAGAATGTATTGCAGGTATA+TGG	+	chr6.2:77874606-77874625	MS.gene05240:intron	30.0%
AATACTTTCCTAATTGCAGA+AGG	+	chr6.2:77872947-77872966	MS.gene05240:intron	30.0%
AATCCTTTGTGTATCTTCAA+GGG	-	chr6.2:77875549-77875568	None:intergenic	30.0%
AATTTCAAAAGGGCAAGATA+GGG	+	chr6.2:77873834-77873853	MS.gene05240:CDS	30.0%
ATAACGATGGTATTCATCAA+CGG	-	chr6.2:77872409-77872428	None:intergenic	30.0%
ATACTTCCAAGTAAGAAACT+AGG	+	chr6.2:77872615-77872634	MS.gene05240:intron	30.0%
ATCAAGCAAAGCTTGTAAAA+GGG	+	chr6.2:77874704-77874723	MS.gene05240:CDS	30.0%
CAATGAAAAAGGGTAACAAA+AGG	-	chr6.2:77873139-77873158	None:intergenic	30.0%
CCTAGACATTAAACTCTTAA+AGG	+	chr6.2:77874006-77874025	MS.gene05240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	77872327	77876079	77872327	ID=MS.gene05240
chr6.2	mRNA	77872327	77876079	77872327	ID=MS.gene05240.t1;Parent=MS.gene05240
chr6.2	exon	77872327	77872431	77872327	ID=MS.gene05240.t1.exon1;Parent=MS.gene05240.t1
chr6.2	CDS	77872327	77872431	77872327	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77872549	77872624	77872549	ID=MS.gene05240.t1.exon2;Parent=MS.gene05240.t1
chr6.2	CDS	77872549	77872624	77872549	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77872966	77873043	77872966	ID=MS.gene05240.t1.exon3;Parent=MS.gene05240.t1
chr6.2	CDS	77872966	77873043	77872966	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77873128	77873215	77873128	ID=MS.gene05240.t1.exon4;Parent=MS.gene05240.t1
chr6.2	CDS	77873128	77873215	77873128	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77873308	77873563	77873308	ID=MS.gene05240.t1.exon5;Parent=MS.gene05240.t1
chr6.2	CDS	77873308	77873563	77873308	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77873833	77873948	77873833	ID=MS.gene05240.t1.exon6;Parent=MS.gene05240.t1
chr6.2	CDS	77873833	77873948	77873833	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77874621	77874841	77874621	ID=MS.gene05240.t1.exon7;Parent=MS.gene05240.t1
chr6.2	CDS	77874621	77874841	77874621	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77875032	77875063	77875032	ID=MS.gene05240.t1.exon8;Parent=MS.gene05240.t1
chr6.2	CDS	77875032	77875063	77875032	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77875235	77875337	77875235	ID=MS.gene05240.t1.exon9;Parent=MS.gene05240.t1
chr6.2	CDS	77875235	77875337	77875235	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77875504	77875612	77875504	ID=MS.gene05240.t1.exon10;Parent=MS.gene05240.t1
chr6.2	CDS	77875504	77875612	77875504	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2	exon	77875884	77876079	77875884	ID=MS.gene05240.t1.exon11;Parent=MS.gene05240.t1
chr6.2	CDS	77875884	77876079	77875884	ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1

Gene Sequence

>MS.gene05240

ATGTCCGGTTCAAAGCACCATCACATTCTACTGCTAAACTTGTCAGATAAAATAAAGGACAGAAGTAATGGAGACATAGCCGTTGATGAATACCATCGTTATAAGGTTCAATACTATGCTCTAACATGTCCATGATGCTTTAATTTGTGTGTTAATAATATTAATATAATAATAAAAACATTGATGCTAGAGCATAATTAAGACATTATTGATATAATGCAGGAAGATGTTGAGATGATCAAGGACATCAATATGGATGCTTATAGATTTTCCATCTCTTGGTCCAGAATACTTCCAAGTAAGAAACTAGGGCTAAGAGACATTTTCTTCTTTTGGAAACTTTTGAACATTACCTTTCCATAAGATTTTTTTTTTTAATGTTTATAATTGATAATAAATTTATAATTATTATAAATTGGCAAATTCTTATCATGCTAACATGTGTCCTTAGAACATATAATAAGGTTTTTACAAGTAGTAAATATTTATTGTAAAAAAGTAATTATAAAGGACTTGAAAAATAAATTTGCACAATTTTCAATACAGAATTTTCATTAAAAATATTTCAACATGTGCCCTAAGGCACAAGTTAGCATTTCTCAATACTTATTTACATGTTGAATACTTTCCTAATTGCAGAAGGAAAGCTTAGTGGAGGTGTAAATAGGGAAGGAATTAAGTATTACAACAACCTCATCAATGAGTTGCTGGCCAAAGGTCATCAAATATGAACTTAATGTTTGTCTTTTTTGTTTTCAATTATTTTTGTCTAAAATATTTCAATTGTATCTATCAATGTAGGTCTTCAACCTTTTGTTACCCTTTTTCATTGGGACCTTCCTCAGACACTTGAAGATGAATATAATGGCTTTTTAAGTCCAAATATAGTGTAACTCACATCCCTTATGACCAAAAATAATTAAATATCATAAAGTTAGGCATATCATCATGTGTTTTCCCTCTAACTATTACCATGTGTAGGAATGATTTTCGAGACTATGCAGAGCTTTGCTTTAAAGAATTTGGTGATAGAGTAAAGAATTGGATCACACTGAATGAACCATGGGCCTTCGCCAAGCATGCTTATGTTGATGGAAGCTTCGCACCTGGACGATGTTCGCCTTGGCAAAACTTGAATTGCACCGGTGGAGATTCTGCCACTGAACCCTATATAGTGACTCATAATCAAATACTTGCTCATGCATCTGCCGTCAATGTCTACAAAACTAAGTATCAGGTATTATTTTATTTTAACTAAAAGAATTAAATCAATTCACAAGGTGCATCTCTTAGACTTGGGTTATGCGCTATATATGATAGTGTATGATAGATTTTCGAATTTAGATTGGACTGAAATCAATCCAACAAGTTTATGTAGCGAGAGTTGTTAGCAACACTCACTTTTGAATACTCTCTGGCACTCACTCATATTCTAACACTAAGTGTTTCTTTAAACATTTAATTTACTCACATTGAGACCTAAACTTTCCTTTAATTTATACGCAGAAATTTCAAAAGGGCAAGATAGGGATAACATTAGTGTGTCACTGGACGGTGCCACTCTATGATACAAAATTGGATCATCATGCTTCACAAAGAGCCATTGATTTCATGTTTGGATGGTAATTAACTACTTTATGAACCTTAAATTATATATGGAACTCAACTACATTAATTATCCTAGACATTAAACTCTTAAAGGGGAACGCTGACCATAAAATGGTGTAGCTCATTGTTGACTTTTTTTTAGAGGCGCATTGTTGACATTTTTATTTATTATATTTATCGAAAAAAATTGTTTATGGACATCCACTTTTTTAAACACCCATATCACCAGATTGATCACTAATCACATGTAAAAATATGGTTAACTTAGTTAATTAGATGGTTAGTTCAATTTACCTTAAAAATTGTGGTTATTTCATGTAGTTGAATTAATAACAATTTGACTATAATTTAATATCATGATTGAATGAAATAGTAAGTTTATTGATTGAATATTGAATGTACAATTTCTATTTATATACAAAGGAGACTCTACACGCTAGCTTATTGTGCAAGTAATCACACAGGATTACTAAACTAAACTAGCTAACTAGATAACTTGTTGCCTAAGTAATCCACTATTCACTAATCTATTTACTAGTATCTTCATTTGCAATAATTAAGTTAATCATCTATTCAATTGAATTATAACCACATGTTTGAAGATGTAGTGAGCATGTGCAAAAAGAAATTGTTGTATATGTATCATTACTCTTATCAAAATAGCTATTTAAAAGAATGTATTGCAGGTATATGGATCCATTGACAATTGGAGACTATCCAAGCTCCATGAGATCCTTAGTAGGGAGTCGATTACCAAAGTTCTCAAAATATCAAGCAAAGCTTGTAAAAGGGTCCTTTGATTTTATTGGATTAAACTATTACACTTCCCATTATGCAACTAATGCACCTGAATTAAGTGAAGTCATCAAGCCCAGCTACAACACAGATGCACTTGTTAGTTTTACAAGTAAGTGTGTTTAATGATGAATGAAATTTTTAGTAATACAACACACTTTACTCACTATCACATCTTAAACGTGTGACAAAATGAAAAAAAATTTCTTCTCTAATACATCAAAGATATACAATTACATTTTTTTTAGGAATTATATATATTTTTGTTAGCAATAGATTATGATATTATATTTTTTTCACAGGCCAGCGCAATGGAATACCTATTGGCCCAACGGTATGTGCATGAGAATATAATTGATATGAGAAATGCTAAGAACATTCTCTTTCTAGCACTCTCTTTAACACTAACATTCACTCTTCTACTATGTGAAACTCATTAGTTTATGTTTTTAATTTTTTTCAAAGGGTATTTACATTGTAGCTCTACACTATATTACACATGCAGGCTGCTTCAGGATGGTTATCAATTTATCCAAAGGGTATTCACGACCTGTTGATCTACACTAAAATAAAGTACAACAATCCATTGATCTATATCACTGAAAATGGTAATACCAATACACTATATTTATTATTTATTTTAAATCTATTTCTTTAAGCAAAAATTAAGATTTGATTATGCTAAAATTTGAATAGAGAATATGTGCTGATGTATTGATTTCTTACTAATATACAATTTGATGGTAAACAACTATATTGTGAATCTATATATAGGTATGGATGACTTTAATGATCCAGCACTCCCTCTTGAGAATGCCCTTGAAGATACACAAAGGATTGATTACTATTATGATCATCTCTACTATCTTCAAACTGCAATAAAGTATGTGCCCTCAAAACATAACAAAAATTAAATTAATGATTTTTTTGACCAAAAAAAAGTTAAATTAATGATAGAAATGTATAGAACAATAATATAAATTTTATCATTAATTCTCTATATATTTATGACTAAACTCGTGACACATTTTATTTTTTTTCTATATAGAAATTTAGATACTAATTTTATTTTTGTATAGTGCAAATTCCTTCTTTATCTAATTAACCTATTGCGTGTGTGTATATATGTTTAATGTATCCAATTTTTTTACCAGGGATGGTGTGAATGTAAAAGGGTATTTTGCATGGTCATTGGTTGATAACTTCGAATGGGGTTTAGGCTACACTTCGAGGTTTGGAATATACTTCATAGATTACAACAATGGCCTCAAAAGATATCCAAAAATGTCAGCTATCTGGTTTAAGAATTTTCTACAACATAAAATAGTTGCATATGGTGATTCGCGCTAA

Protein sequence

>MS.gene05240.t1

MSGSKHHHILLLNLSDKIKDRSNGDIAVDEYHRYKEDVEMIKDINMDAYRFSISWSRILPKGKLSGGVNREGIKYYNNLINELLAKGLQPFVTLFHWDLPQTLEDEYNGFLSPNIVNDFRDYAELCFKEFGDRVKNWITLNEPWAFAKHAYVDGSFAPGRCSPWQNLNCTGGDSATEPYIVTHNQILAHASAVNVYKTKYQKFQKGKIGITLVCHWTVPLYDTKLDHHASQRAIDFMFGWYMDPLTIGDYPSSMRSLVGSRLPKFSKYQAKLVKGSFDFIGLNYYTSHYATNAPELSEVIKPSYNTDALVSFTSQRNGIPIGPTAASGWLSIYPKGIHDLLIYTKIKYNNPLIYITENGMDDFNDPALPLENALEDTQRIDYYYDHLYYLQTAIKDGVNVKGYFAWSLVDNFEWGLGYTSRFGIYFIDYNNGLKRYPKMSAIWFKNFLQHKIVAYGDSR