AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05240.t1 MTR_6g078380 94.183 447 26 0 13 459 76 522 0.0 862
MS.gene05240.t1 MTR_6g078450 83.973 443 70 1 13 455 76 517 0.0 800
MS.gene05240.t1 MTR_6g078330 76.510 447 104 1 13 459 77 522 0.0 724
MS.gene05240.t1 MTR_6g078450 84.334 383 59 1 13 395 76 457 0.0 692
MS.gene05240.t1 MTR_6g078330 76.850 419 96 1 41 459 1 418 0.0 683
MS.gene05240.t1 MTR_2g098520 70.805 435 126 1 16 450 77 510 0.0 664
MS.gene05240.t1 MTR_2g098790 70.046 434 129 1 16 449 81 513 0.0 655
MS.gene05240.t1 MTR_2g098540 69.885 435 130 1 16 450 74 507 0.0 654
MS.gene05240.t1 MTR_2g098540 69.885 435 130 1 16 450 30 463 0.0 652
MS.gene05240.t1 MTR_3g028720 69.037 436 134 1 16 451 81 515 0.0 650
MS.gene05240.t1 MTR_6g078330 74.939 407 99 2 53 459 15 418 0.0 646
MS.gene05240.t1 MTR_4g066580 68.578 436 136 1 16 451 82 516 0.0 645
MS.gene05240.t1 MTR_4g066210 67.972 434 138 1 16 449 86 518 0.0 639
MS.gene05240.t1 MTR_4g066340 68.736 435 135 1 15 449 5 438 0.0 638
MS.gene05240.t1 MTR_4g066240 67.281 434 141 1 16 449 79 511 0.0 634
MS.gene05240.t1 MTR_4g066630 67.195 442 144 1 17 458 83 523 0.0 633
MS.gene05240.t1 MTR_4g066590 68.506 435 136 1 17 451 77 510 0.0 632
MS.gene05240.t1 MTR_4g066240 67.126 435 141 2 16 449 79 512 0.0 630
MS.gene05240.t1 MTR_5g071520 67.117 444 136 2 16 450 82 524 0.0 608
MS.gene05240.t1 MTR_4g066640 65.138 436 147 3 16 450 82 513 0.0 608
MS.gene05240.t1 MTR_4g066330 64.531 437 128 3 16 451 84 494 0.0 586
MS.gene05240.t1 MTR_4g066280 62.989 435 134 3 16 449 84 492 0.0 575
MS.gene05240.t1 MTR_3g028720 69.737 380 114 1 16 395 81 459 0.0 569
MS.gene05240.t1 MTR_3g026280 60.690 435 165 2 16 450 65 493 0.0 553
MS.gene05240.t1 MTR_4g066630 67.460 378 122 1 17 394 83 459 0.0 549
MS.gene05240.t1 MTR_4g023000 59.725 437 169 3 13 449 64 493 0.0 541
MS.gene05240.t1 MTR_3g028720 71.802 344 96 1 16 359 81 423 0.0 528
MS.gene05240.t1 MTR_4g066580 70.402 348 102 1 16 363 82 428 0.0 523
MS.gene05240.t1 MTR_4g066630 69.388 343 104 1 17 359 83 424 3.44e-180 511
MS.gene05240.t1 MTR_3g026400 55.991 434 184 4 16 448 49 476 1.37e-179 511
MS.gene05240.t1 MTR_3g026400 55.991 434 184 4 16 448 80 507 2.06e-179 512
MS.gene05240.t1 MTR_4g066240 66.860 344 113 1 16 359 79 421 3.88e-176 500
MS.gene05240.t1 MTR_4g015420 54.730 444 163 4 17 449 108 524 2.02e-173 497
MS.gene05240.t1 MTR_2g043200 56.522 437 158 5 18 449 109 518 9.64e-173 495
MS.gene05240.t1 MTR_6g078330 76.159 302 71 1 13 314 77 377 1.44e-171 487
MS.gene05240.t1 MTR_4g083000 55.172 435 190 4 17 449 71 502 3.17e-171 491
MS.gene05240.t1 MTR_4g067040 69.486 331 100 1 17 347 78 407 1.23e-170 485
MS.gene05240.t1 MTR_5g044000 55.862 435 186 5 17 448 89 520 4.25e-169 486
MS.gene05240.t1 MTR_3g026620 54.965 433 190 3 16 448 81 508 1.58e-168 484
MS.gene05240.t1 MTR_3g028720 71.661 307 86 1 16 322 81 386 1.54e-166 475
MS.gene05240.t1 MTR_4g015460 54.176 443 166 6 18 450 86 501 2.37e-165 476
MS.gene05240.t1 MTR_4g067040 71.242 306 87 1 17 322 78 382 5.74e-162 462
MS.gene05240.t1 MTR_4g081530 52.027 444 206 4 17 455 67 508 5.64e-159 460
MS.gene05240.t1 MTR_0110s0040 52.304 434 200 5 18 451 87 513 8.16e-159 459
MS.gene05240.t1 MTR_4g083000 54.988 411 180 4 41 449 1 408 4.56e-158 454
MS.gene05240.t1 MTR_4g066630 69.231 299 91 1 17 315 83 380 4.58e-157 450
MS.gene05240.t1 MTR_0110s0030 51.382 434 204 5 18 451 87 513 3.28e-156 453
MS.gene05240.t1 MTR_4g066640 65.385 312 103 3 16 326 82 389 3.08e-151 436
MS.gene05240.t1 MTR_3g033790 48.037 433 211 4 17 449 62 480 5.75e-145 423
MS.gene05240.t1 MTR_4g131810 48.037 433 221 4 18 448 73 503 5.30e-144 422
MS.gene05240.t1 MTR_3g033810 48.736 435 206 5 17 449 64 483 6.02e-144 421
MS.gene05240.t1 MTR_2g022760 46.309 447 233 6 16 459 79 521 7.54e-138 406
MS.gene05240.t1 MTR_2g079580 44.342 433 238 3 18 450 76 505 5.61e-136 402
MS.gene05240.t1 MTR_2g079550 45.012 431 234 3 18 448 74 501 5.78e-135 399
MS.gene05240.t1 MTR_2g022710 45.103 439 236 5 18 454 79 514 2.92e-133 394
MS.gene05240.t1 MTR_4g131800 47.356 435 222 7 20 451 562 992 1.24e-131 405
MS.gene05240.t1 MTR_7g068910 45.370 432 222 4 21 451 78 496 6.30e-128 381
MS.gene05240.t1 MTR_4g016920 43.218 435 231 5 21 453 74 494 4.31e-125 374
MS.gene05240.t1 MTR_7g068910 44.344 442 222 5 21 451 78 506 1.18e-124 373
MS.gene05240.t1 MTR_7g033860 44.917 423 217 6 28 448 103 511 2.11e-124 372
MS.gene05240.t1 MTR_2g022760 44.787 422 226 6 41 459 1 418 8.65e-124 367
MS.gene05240.t1 MTR_3g026400 61.091 275 104 2 16 290 80 351 6.08e-123 363
MS.gene05240.t1 MTR_0108s0030 42.763 456 223 7 1 448 23 448 1.02e-122 365
MS.gene05240.t1 MTR_2g022710 43.990 416 228 5 41 454 1 413 1.71e-121 361
MS.gene05240.t1 MTR_5g068740 43.852 431 223 7 23 449 74 489 1.95e-121 364
MS.gene05240.t1 MTR_7g068900 44.153 419 217 5 36 451 17 421 4.38e-119 357
MS.gene05240.t1 MTR_1g088610 42.890 429 229 5 23 449 74 488 2.18e-118 360
MS.gene05240.t1 MTR_1g088610 32.639 144 74 3 323 449 476 613 3.39e-16 81.6
MS.gene05240.t1 MTR_7g051610 44.028 427 223 6 28 452 123 535 2.97e-116 352
MS.gene05240.t1 MTR_4g016920 42.615 413 221 5 41 451 1 399 1.33e-114 343
MS.gene05240.t1 MTR_7g051650 43.839 422 224 4 28 448 119 528 3.57e-114 346
MS.gene05240.t1 MTR_7g051650 43.839 422 224 4 28 448 123 532 5.55e-114 345
MS.gene05240.t1 MTR_7g051510 42.572 451 242 8 1 448 95 531 6.99e-114 345
MS.gene05240.t1 MTR_2g079580 45.906 342 183 2 18 359 76 415 7.31e-110 331
MS.gene05240.t1 MTR_2g022710 44.063 379 209 3 18 395 79 455 2.73e-109 331
MS.gene05240.t1 MTR_2g022710 44.063 379 209 3 18 395 79 455 4.88e-109 331
MS.gene05240.t1 MTR_0110s0040 52.349 298 138 3 18 315 87 380 8.90e-108 325
MS.gene05240.t1 MTR_1g088630 41.475 434 204 9 23 449 42 432 9.15e-107 324
MS.gene05240.t1 MTR_7g056747 41.667 420 218 5 35 453 9 402 2.09e-105 319
MS.gene05240.t1 MTR_2g022710 45.773 343 183 3 18 359 79 419 4.71e-105 319
MS.gene05240.t1 MTR_2g022710 45.289 329 177 3 18 345 79 405 4.20e-99 303
MS.gene05240.t1 MTR_2g022710 46.732 306 160 3 18 322 79 382 1.14e-92 287
MS.gene05240.t1 MTR_4g016920 48.718 273 138 1 41 313 1 271 2.26e-90 277
MS.gene05240.t1 MTR_1g088630 47.970 271 114 4 23 292 74 318 8.92e-83 259
MS.gene05240.t1 MTR_1g088630 52.752 218 100 2 23 239 74 289 7.24e-75 237
MS.gene05240.t1 MTR_0110s0020 56.522 184 77 2 18 201 87 267 7.61e-70 224
MS.gene05240.t1 MTR_5g069350 45.810 179 43 7 287 449 48 188 6.89e-34 126
MS.gene05240.t1 MTR_4g122980 24.939 409 235 11 37 440 183 524 2.52e-26 112
MS.gene05240.t1 MTR_8g038650 42.373 118 58 1 187 294 35 152 6.96e-24 97.8
MS.gene05240.t1 MTR_4g061170 54.717 53 22 1 385 435 12 64 8.00e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05240.t1 AT5G44640 56.064 437 185 3 16 451 74 504 0.0 519
MS.gene05240.t1 AT5G42260 57.209 430 177 3 16 444 74 497 0.0 517
MS.gene05240.t1 AT2G44450 55.046 436 190 2 16 451 74 503 3.00e-180 514
MS.gene05240.t1 AT2G44480 53.103 435 202 2 16 450 78 510 4.89e-176 503
MS.gene05240.t1 AT3G60130 56.092 435 184 3 16 449 73 501 1.90e-175 502
MS.gene05240.t1 AT2G44480 53.103 435 202 2 16 450 109 541 2.59e-175 503
MS.gene05240.t1 AT3G60130 55.769 416 177 3 35 449 40 449 1.48e-168 482
MS.gene05240.t1 AT1G47600 53.687 434 191 4 16 448 85 509 2.67e-166 478
MS.gene05240.t1 AT2G44480 52.927 410 191 2 41 450 1 408 3.10e-166 474
MS.gene05240.t1 AT1G26560 53.917 434 196 3 17 448 75 506 2.68e-165 476
MS.gene05240.t1 AT1G51470 53.687 434 191 4 16 448 85 509 4.39e-165 475
MS.gene05240.t1 AT1G47600 53.226 434 192 4 16 448 85 508 5.22e-165 475
MS.gene05240.t1 AT2G25630 52.632 437 183 4 16 451 73 486 3.95e-163 469
MS.gene05240.t1 AT5G24550 51.044 431 206 5 23 449 81 510 3.07e-161 466
MS.gene05240.t1 AT3G60130 53.846 416 174 4 35 449 40 438 1.75e-159 459
MS.gene05240.t1 AT5G54570 51.613 434 206 3 17 448 74 505 2.33e-159 462
MS.gene05240.t1 AT3G60140 49.425 435 216 4 23 454 75 508 4.91e-159 462
MS.gene05240.t1 AT3G18080 51.818 440 206 4 11 450 76 509 2.55e-157 456
MS.gene05240.t1 AT3G60120 51.270 433 204 6 22 450 62 491 3.45e-155 451
MS.gene05240.t1 AT5G24540 51.270 433 204 6 23 450 81 511 2.70e-154 449
MS.gene05240.t1 AT3G18070 49.206 441 208 7 11 450 67 492 2.71e-151 439
MS.gene05240.t1 AT3G18070 49.206 441 214 7 11 450 67 498 1.76e-150 438
MS.gene05240.t1 AT5G54570 51.707 410 194 3 41 448 1 408 3.21e-150 435
MS.gene05240.t1 AT5G25980 50.230 434 207 8 20 449 95 523 4.09e-149 436
MS.gene05240.t1 AT2G44470 47.018 436 225 5 22 453 77 510 1.21e-148 436
MS.gene05240.t1 AT2G44460 49.770 434 211 6 22 451 77 507 1.83e-148 436
MS.gene05240.t1 AT5G36890 48.630 438 212 4 13 449 55 480 3.53e-146 426
MS.gene05240.t1 AT5G36890 48.630 438 212 4 13 449 55 480 4.11e-146 426
MS.gene05240.t1 AT5G26000 50.691 434 204 6 20 448 83 511 3.92e-145 426
MS.gene05240.t1 AT2G44490 48.064 439 219 7 17 449 58 493 6.84e-144 423
MS.gene05240.t1 AT2G44450 52.793 358 163 2 94 451 1 352 8.80e-140 405
MS.gene05240.t1 AT3G21370 47.926 434 216 7 23 449 82 512 4.10e-138 407
MS.gene05240.t1 AT2G32860 45.909 440 231 6 16 451 137 573 6.25e-137 407
MS.gene05240.t1 AT2G32860 45.455 440 234 5 16 451 137 574 1.78e-135 403
MS.gene05240.t1 AT1G61820 46.241 439 229 6 17 452 74 508 1.46e-134 398
MS.gene05240.t1 AT5G54570 50.526 380 185 2 17 395 74 451 2.06e-134 395
MS.gene05240.t1 AT1G75940 46.911 437 218 8 23 449 86 518 3.63e-134 397
MS.gene05240.t1 AT3G03640 46.189 433 224 6 23 449 84 513 4.73e-134 397
MS.gene05240.t1 AT3G09260 46.313 434 226 6 23 452 84 514 6.13e-134 396
MS.gene05240.t1 AT4G21760 43.459 451 243 7 10 457 90 531 1.21e-133 396
MS.gene05240.t1 AT1G66280 48.046 435 216 7 23 452 85 514 3.69e-132 392
MS.gene05240.t1 AT5G28510 45.558 439 227 7 23 452 88 523 2.40e-131 390
MS.gene05240.t1 AT1G52400 46.469 439 219 9 20 449 85 516 7.15e-131 389
MS.gene05240.t1 AT1G52400 46.469 439 219 9 20 449 85 516 7.15e-131 389
MS.gene05240.t1 AT5G25980 50.265 378 181 6 20 395 95 467 2.33e-130 385
MS.gene05240.t1 AT5G25980 50.265 378 181 6 20 395 95 467 2.33e-130 385
MS.gene05240.t1 AT1G66270 47.356 435 219 7 23 452 85 514 3.24e-130 387
MS.gene05240.t1 AT1G61810 44.419 439 237 6 17 452 77 511 6.88e-130 386
MS.gene05240.t1 AT4G27830 45.000 440 223 7 23 458 71 495 1.11e-129 385
MS.gene05240.t1 AT1G02850 45.349 430 214 6 24 449 74 486 5.37e-129 383
MS.gene05240.t1 AT5G26000 50.923 379 178 4 20 395 83 456 4.29e-128 379
MS.gene05240.t1 AT1G66270 47.126 435 218 8 23 452 85 512 4.23e-127 379
MS.gene05240.t1 AT4G21760 42.572 451 237 8 10 457 90 521 6.95e-127 379
MS.gene05240.t1 AT5G24540 49.734 376 183 5 23 394 81 454 7.75e-126 373
MS.gene05240.t1 AT4G27820 44.954 436 223 6 20 452 65 486 7.59e-125 372
MS.gene05240.t1 AT1G02850 43.046 453 214 7 24 449 74 509 2.66e-124 372
MS.gene05240.t1 AT1G02850 43.172 454 213 8 24 449 74 510 4.73e-123 369
MS.gene05240.t1 AT1G61810 44.550 422 227 6 17 435 77 494 7.26e-123 369
MS.gene05240.t1 AT2G44470 45.479 376 200 4 22 394 77 450 8.92e-122 363
MS.gene05240.t1 AT1G61810 44.417 412 222 6 44 452 4 411 1.44e-120 358
MS.gene05240.t1 AT4G27830 44.076 422 217 7 41 458 1 407 2.29e-120 358
MS.gene05240.t1 AT3G60140 48.397 343 174 3 23 363 75 416 9.90e-120 358
MS.gene05240.t1 AT1G02850 43.488 430 195 7 24 449 74 459 2.87e-118 354
MS.gene05240.t1 AT3G62750 42.824 432 225 7 22 452 67 477 3.14e-116 350
MS.gene05240.t1 AT3G62750 42.824 432 225 7 22 452 93 503 6.17e-116 350
MS.gene05240.t1 AT4G27820 44.337 415 214 6 41 452 1 401 5.17e-115 344
MS.gene05240.t1 AT4G27820 44.337 415 214 6 41 452 1 401 5.17e-115 344
MS.gene05240.t1 AT4G22100 42.760 442 235 7 19 456 63 490 7.44e-115 347
MS.gene05240.t1 AT1G60090 42.299 435 231 8 19 449 65 483 5.95e-114 345
MS.gene05240.t1 AT2G44460 48.626 364 180 6 92 451 1 361 8.27e-114 342
MS.gene05240.t1 AT2G44480 57.090 268 113 2 16 283 109 374 8.25e-113 338
MS.gene05240.t1 AT1G45191 42.466 438 234 8 23 456 74 497 4.69e-112 340
MS.gene05240.t1 AT1G60090 41.230 439 237 8 19 449 65 490 5.82e-112 340
MS.gene05240.t1 AT1G45191 42.273 440 237 8 23 456 74 502 8.56e-112 339
MS.gene05240.t1 AT1G45191 42.494 433 225 7 23 451 74 486 1.13e-111 338
MS.gene05240.t1 AT3G62740 40.972 432 235 7 23 452 69 482 1.33e-111 338
MS.gene05240.t1 AT1G45191 42.273 440 237 8 23 456 86 514 1.80e-111 339
MS.gene05240.t1 AT3G18070 50.000 328 158 5 124 450 99 421 1.73e-109 330
MS.gene05240.t1 AT5G48375 43.035 402 157 7 20 413 74 411 1.51e-107 326
MS.gene05240.t1 AT1G52400 44.909 383 196 8 20 394 85 460 8.71e-106 322
MS.gene05240.t1 AT3G62750 41.404 413 220 7 41 452 1 392 1.14e-105 320
MS.gene05240.t1 AT3G62750 41.404 413 220 7 41 452 1 392 1.14e-105 320
MS.gene05240.t1 AT2G44480 48.525 305 155 2 146 450 2 304 1.22e-105 317
MS.gene05240.t1 AT1G61820 44.173 369 200 5 87 452 4 369 1.88e-104 316
MS.gene05240.t1 AT1G02850 44.751 362 163 5 24 359 74 424 7.01e-103 314
MS.gene05240.t1 AT3G18070 49.363 314 153 5 138 450 1 309 2.22e-102 308
MS.gene05240.t1 AT2G44470 48.432 287 144 3 23 307 78 362 7.17e-102 310
MS.gene05240.t1 AT1G51490 49.840 313 144 6 16 326 60 361 1.03e-98 302
MS.gene05240.t1 AT3G18070 47.855 303 151 5 11 312 67 363 2.17e-96 295
MS.gene05240.t1 AT1G61810 43.642 346 189 5 17 359 77 419 3.52e-96 296
MS.gene05240.t1 AT3G62750 42.287 376 196 6 22 397 93 447 5.71e-95 294
MS.gene05240.t1 AT3G62740 41.489 376 197 7 22 394 68 423 3.21e-94 291
MS.gene05240.t1 AT1G60270 49.825 285 133 4 20 303 67 342 2.87e-90 280
MS.gene05240.t1 AT1G45191 45.246 305 159 4 19 320 70 369 3.52e-89 278
MS.gene05240.t1 AT1G45191 46.575 292 148 4 19 307 70 356 1.02e-87 274
MS.gene05240.t1 AT3G62750 47.253 273 133 3 22 294 67 328 1.94e-86 269
MS.gene05240.t1 AT3G62750 47.253 273 133 3 22 294 67 328 1.94e-86 269
MS.gene05240.t1 AT3G62750 47.253 273 133 3 22 294 93 354 2.04e-85 269
MS.gene05240.t1 AT1G60270 49.618 262 122 4 43 303 3 255 5.91e-81 253
MS.gene05240.t1 AT1G61810 50.220 227 109 3 17 242 77 300 2.76e-74 236
MS.gene05240.t1 AT3G18070 46.311 244 128 3 119 361 94 335 1.30e-70 228
MS.gene05240.t1 AT3G18070 45.778 225 119 3 138 361 1 223 1.02e-63 206
MS.gene05240.t1 AT5G16580 38.390 323 169 9 88 405 2 299 8.10e-53 180
MS.gene05240.t1 AT3G06510 26.636 428 240 14 36 457 159 518 1.54e-28 119
MS.gene05240.t1 AT3G06510 26.906 446 250 17 36 457 159 552 4.81e-28 117

Find 95 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTGCTTTAAAGAATT+TGG 0.146112 6.2:+77873330 MS.gene05240:CDS
TATCAAGCAAAGCTTGTAAA+AGG 0.202527 6.2:+77874703 MS.gene05240:CDS
TTTCTTACTTGGAAGTATTC+TGG 0.217868 6.2:-77872610 None:intergenic
AGGGATGGTGTGAATGTAAA+AGG 0.247212 6.2:+77875882 MS.gene05240:intron
TTGATCTATATCACTGAAAA+TGG 0.261422 6.2:+77875316 MS.gene05240:CDS
TTGATGACTTCACTTAATTC+AGG 0.294272 6.2:-77874781 None:intergenic
GCCACTCTATGATACAAAAT+TGG 0.298973 6.2:+77873883 MS.gene05240:CDS
TGATTATGAGTCACTATATA+GGG 0.301091 6.2:-77873492 None:intergenic
GAGGAAGGTCCCAATGAAAA+AGG 0.301739 6.2:-77873147 None:intergenic
AAGAATGTATTGCAGGTATA+TGG 0.303911 6.2:+77874606 MS.gene05240:intron
AGAGCCATTGATTTCATGTT+TGG 0.306421 6.2:+77873923 MS.gene05240:CDS
GATGTGAGTTACACTATATT+TGG 0.308617 6.2:-77873205 None:intergenic
TGATGAATACCATCGTTATA+AGG 0.309617 6.2:+77872410 MS.gene05240:CDS
GCCAAGCATGCTTATGTTGA+TGG 0.330838 6.2:+77873399 MS.gene05240:CDS
AGCTTAGTGGAGGTGTAAAT+AGG 0.332322 6.2:+77872972 MS.gene05240:CDS
AGGTGCATTAGTTGCATAAT+GGG 0.332976 6.2:-77874761 None:intergenic
AAATTTCAAAAGGGCAAGAT+AGG 0.333322 6.2:+77873833 MS.gene05240:CDS
TTACACATGCAGGCTGCTTC+AGG 0.335032 6.2:+77875223 MS.gene05240:intron
GATAACTTCGAATGGGGTTT+AGG 0.350327 6.2:+77875927 MS.gene05240:CDS
TTGATTATGAGTCACTATAT+AGG 0.356386 6.2:-77873493 None:intergenic
TGTCTACAAAACTAAGTATC+AGG 0.359104 6.2:+77873542 MS.gene05240:CDS
TTAGGCTACACTTCGAGGTT+TGG 0.361866 6.2:+77875945 MS.gene05240:CDS
TTGGTGATAGAGTAAAGAAT+TGG 0.378652 6.2:+77873349 MS.gene05240:CDS
GATGATCAAGGACATCAATA+TGG 0.390761 6.2:+77872560 MS.gene05240:CDS
CAATCCTTTGTGTATCTTCA+AGG 0.392455 6.2:-77875547 None:intergenic
GCACATACCGTTGGGCCAAT+AGG 0.395361 6.2:-77875049 None:intergenic
GCTTAGTGGAGGTGTAAATA+GGG 0.402721 6.2:+77872973 MS.gene05240:CDS
TTCTTCATATATTCAATGTC+CGG 0.405124 6.2:+77872312 None:intergenic
CAGGTGCATTAGTTGCATAA+TGG 0.412377 6.2:-77874762 None:intergenic
CAACCTCATCAATGAGTTGC+TGG 0.414002 6.2:+77873015 MS.gene05240:CDS
ACACTTGAAGATGAATATAA+TGG 0.421152 6.2:+77873172 MS.gene05240:CDS
AAGTGCATCTGTGTTGTAGC+TGG 0.421551 6.2:-77874806 None:intergenic
AAACTTGTCAGATAAAATAA+AGG 0.429402 6.2:+77872362 MS.gene05240:CDS
TATATGGATCCATTGACAAT+TGG 0.458276 6.2:+77874622 MS.gene05240:CDS
CAGCGCAATGGAATACCTAT+TGG 0.459924 6.2:+77875034 MS.gene05240:CDS
TTATACGCAGAAATTTCAAA+AGG 0.461398 6.2:+77873823 MS.gene05240:intron
AAAATAAAGGACAGAAGTAA+TGG 0.467864 6.2:+77872375 MS.gene05240:CDS
AACAGGTCGTGAATACCCTT+TGG 0.468123 6.2:-77875262 None:intergenic
TGCCAAGGCGAACATCGTCC+AGG 0.478937 6.2:-77873432 None:intergenic
GGGGTTTAGGCTACACTTCG+AGG 0.480196 6.2:+77875940 MS.gene05240:CDS
CAACATAAAATAGTTGCATA+TGG 0.481679 6.2:+77876044 MS.gene05240:CDS
ATTGGTTGATAACTTCGAAT+GGG 0.482017 6.2:+77875920 MS.gene05240:CDS
CACCTGGACGATGTTCGCCT+TGG 0.494411 6.2:+77873430 MS.gene05240:CDS
ATTGCAGAAGGAAAGCTTAG+TGG 0.495347 6.2:+77872959 MS.gene05240:intron
TCCATCAACATAAGCATGCT+TGG 0.501327 6.2:-77873400 None:intergenic
GGATAGTCTCCAATTGTCAA+TGG 0.507092 6.2:-77874631 None:intergenic
CCATCCAAACATGAAATCAA+TGG 0.508555 6.2:-77873927 None:intergenic
ACTAAGGATCTCATGGAGCT+TGG 0.509919 6.2:-77874652 None:intergenic
AATGTGATGGTGCTTTGAAC+CGG 0.510598 6.2:-77872331 None:intergenic
GCATTCTCAAGAGGGAGTGC+TGG 0.512089 6.2:-77875524 None:intergenic
GTTGATGGAAGCTTCGCACC+TGG 0.514214 6.2:+77873414 MS.gene05240:CDS
TGGTTATCAATTTATCCAAA+GGG 0.514428 6.2:+77875247 MS.gene05240:CDS
GGATAACATTAGTGTGTCAC+TGG 0.520216 6.2:+77873855 MS.gene05240:CDS
AGCTCCATGAGATCCTTAGT+AGG 0.526973 6.2:+77874655 MS.gene05240:CDS
ATCAAGCAAAGCTTGTAAAA+GGG 0.528319 6.2:+77874704 MS.gene05240:CDS
CCATTGATTTCATGTTTGGA+TGG 0.528755 6.2:+77873927 MS.gene05240:CDS
TATACGCAGAAATTTCAAAA+GGG 0.528876 6.2:+77873824 MS.gene05240:intron
AATCCTTTGTGTATCTTCAA+GGG 0.531343 6.2:-77875546 None:intergenic
ATGGTTATCAATTTATCCAA+AGG 0.532166 6.2:+77875246 MS.gene05240:CDS
CATTGGTTGATAACTTCGAA+TGG 0.534148 6.2:+77875919 MS.gene05240:CDS
TGGTAATCGACTCCCTACTA+AGG 0.537611 6.2:-77874668 None:intergenic
TGGCAAAACTTGAATTGCAC+CGG 0.541278 6.2:+77873450 MS.gene05240:CDS
ACTCCCTACTAAGGATCTCA+TGG 0.543783 6.2:-77874659 None:intergenic
ATCAATGAGTTGCTGGCCAA+AGG 0.554170 6.2:+77873022 MS.gene05240:CDS
GCATGCTTGGCGAAGGCCCA+TGG 0.558759 6.2:-77873387 None:intergenic
AAGTATTCTGGACCAAGAGA+TGG 0.559511 6.2:-77872598 None:intergenic
CAATAGGTATTCCATTGCGC+TGG 0.561868 6.2:-77875033 None:intergenic
AACATAAGCATGCTTGGCGA+AGG 0.562738 6.2:-77873394 None:intergenic
GTTTAATCCAATAAAATCAA+AGG 0.577644 6.2:-77874728 None:intergenic
AATTTCAAAAGGGCAAGATA+GGG 0.579565 6.2:+77873834 MS.gene05240:CDS
GGGATGGTGTGAATGTAAAA+GGG 0.580656 6.2:+77875883 MS.gene05240:intron
TGGCCAGCAACTCATTGATG+AGG 0.580800 6.2:-77873018 None:intergenic
GCTCCATGAGATCCTTAGTA+GGG 0.587979 6.2:+77874656 MS.gene05240:CDS
GGAAGATGTTGAGATGATCA+AGG 0.589270 6.2:+77872548 MS.gene05240:intron
AGTGCATCTGTGTTGTAGCT+GGG 0.591010 6.2:-77874805 None:intergenic
CATCTTCAAGTGTCTGAGGA+AGG 0.591440 6.2:-77873162 None:intergenic
GATCACACTGAATGAACCAT+GGG 0.595444 6.2:+77873371 MS.gene05240:CDS
TTGGTTGATAACTTCGAATG+GGG 0.595551 6.2:+77875921 MS.gene05240:CDS
TATTCATCTTCAAGTGTCTG+AGG 0.598112 6.2:-77873166 None:intergenic
CTTCAAGGGCATTCTCAAGA+GGG 0.599174 6.2:-77875532 None:intergenic
AGTGGAGGTGTAAATAGGGA+AGG 0.601364 6.2:+77872977 MS.gene05240:CDS
AACATTAGTGTGTCACTGGA+CGG 0.604605 6.2:+77873859 MS.gene05240:CDS
TACTTCATAGATTACAACAA+TGG 0.610172 6.2:+77875972 MS.gene05240:CDS
CAAAACTTGAATTGCACCGG+TGG 0.610258 6.2:+77873453 MS.gene05240:CDS
TTCAGTGGCAGAATCTCCAC+CGG 0.611444 6.2:-77873469 None:intergenic
ACATGCAGGCTGCTTCAGGA+TGG 0.613410 6.2:+77875227 MS.gene05240:intron
TGGAATACCTATTGGCCCAA+CGG 0.614932 6.2:+77875042 MS.gene05240:CDS
TCTTCAAGGGCATTCTCAAG+AGG 0.615300 6.2:-77875533 None:intergenic
GGATCACACTGAATGAACCA+TGG 0.617345 6.2:+77873370 MS.gene05240:CDS
AGTCACTATATAGGGTTCAG+TGG 0.627438 6.2:-77873484 None:intergenic
ATAACGATGGTATTCATCAA+CGG 0.630026 6.2:-77872406 None:intergenic
AGTTTAGCAGTAGAATGTGA+TGG 0.640780 6.2:-77872344 None:intergenic
AGTATTGAACCTTATAACGA+TGG 0.651540 6.2:-77872419 None:intergenic
GCAGAAGGAAAGCTTAGTGG+AGG 0.668340 6.2:+77872962 MS.gene05240:intron
ATGCCCTTGAAGATACACAA+AGG 0.704510 6.2:+77875543 MS.gene05240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAATTATTATAAAT+TGG + chr6.2:77872723-77872742 MS.gene05240:intron 0.0%
!! AAATAATAAATATAGTGTAT+TGG - chr6.2:77875347-77875366 None:intergenic 10.0%
!! CATTAAAAAAAAAAATCTTA+TGG - chr6.2:77872687-77872706 None:intergenic 10.0%
!! TAATTAAATATCATAAAGTT+AGG + chr6.2:77873243-77873262 MS.gene05240:intron 10.0%
!! TTGTAAAAAAGTAATTATAA+AGG + chr6.2:77872815-77872834 MS.gene05240:intron 10.0%
!!! ATGTTTTTAATTTTTTTCAA+AGG + chr6.2:77875173-77875192 MS.gene05240:intron 10.0%
!!! TATACAATTACATTTTTTTT+AGG + chr6.2:77874956-77874975 MS.gene05240:intron 10.0%
!!! TCATTAATTTAACTTTTTTT+TGG - chr6.2:77875664-77875683 None:intergenic 10.0%
!!! TGTTTTTAATTTTTTTCAAA+GGG + chr6.2:77875174-77875193 MS.gene05240:intron 10.0%
!! AAAAAAAAAATCTTATGGAA+AGG - chr6.2:77872682-77872701 None:intergenic 15.0%
!! CAATTTCTATTTATATACAA+AGG + chr6.2:77874336-77874355 MS.gene05240:intron 15.0%
!! TATAAATTAAAGGAAAGTTT+AGG - chr6.2:77873808-77873827 None:intergenic 15.0%
!! TATATTGTGAATCTATATAT+AGG + chr6.2:77875482-77875501 MS.gene05240:intron 15.0%
!! TATGAACCTTAAATTATATA+TGG + chr6.2:77873963-77873982 MS.gene05240:intron 15.0%
!! TTATCGAAAAAAATTGTTTA+TGG + chr6.2:77874109-77874128 MS.gene05240:intron 15.0%
!!! TAATTTTTGTTATGTTTTGA+GGG - chr6.2:77875623-77875642 None:intergenic 15.0%
!!! TGATATTATATTTTTTTCAC+AGG + chr6.2:77875010-77875029 MS.gene05240:intron 15.0%
!!! TTAATTATTTTTGGTCATAA+GGG - chr6.2:77873230-77873249 None:intergenic 15.0%
!!! TTAATTTTTGTTATGTTTTG+AGG - chr6.2:77875624-77875643 None:intergenic 15.0%
!!! TTTAATTATTTTTGGTCATA+AGG - chr6.2:77873231-77873250 None:intergenic 15.0%
!! AAACCTTATTATATGTTCTA+AGG - chr6.2:77872775-77872794 None:intergenic 20.0%
!! AAACTTGTCAGATAAAATAA+AGG + chr6.2:77872362-77872381 MS.gene05240:CDS 20.0%
!! AAGAATTAAATCAATTCACA+AGG + chr6.2:77873585-77873604 MS.gene05240:intron 20.0%
!! AATTTCTGCGTATAAATTAA+AGG - chr6.2:77873818-77873837 None:intergenic 20.0%
!! ACTAATCACATGTAAAAATA+TGG + chr6.2:77874171-77874190 MS.gene05240:intron 20.0%
!! ATAGGTTAATTAGATAAAGA+AGG - chr6.2:77875820-77875839 None:intergenic 20.0%
!! CTTACTAATATACAATTTGA+TGG + chr6.2:77875451-77875470 MS.gene05240:intron 20.0%
!! GTTTAATCCAATAAAATCAA+AGG - chr6.2:77874731-77874750 None:intergenic 20.0%
!! TATTTAAAAGAATGTATTGC+AGG + chr6.2:77874599-77874618 MS.gene05240:intron 20.0%
!! TCAATTTACCTTAAAAATTG+TGG + chr6.2:77874220-77874239 MS.gene05240:intron 20.0%
!! TGAGTTCCATATATAATTTA+AGG - chr6.2:77873972-77873991 None:intergenic 20.0%
!!! ATAGATTTTCGAATTTAGAT+TGG + chr6.2:77873653-77873672 MS.gene05240:intron 20.0%
!!! TGAAATAACCACAATTTTTA+AGG - chr6.2:77874231-77874250 None:intergenic 20.0%
! AAAATAAAGGACAGAAGTAA+TGG + chr6.2:77872375-77872394 MS.gene05240:CDS 25.0%
! ACACTTGAAGATGAATATAA+TGG + chr6.2:77873172-77873191 MS.gene05240:CDS 25.0%
! AGACATTATTGATATAATGC+AGG + chr6.2:77872527-77872546 MS.gene05240:intron 25.0%
! ATGGTTATCAATTTATCCAA+AGG + chr6.2:77875246-77875265 MS.gene05240:CDS 25.0%
! CAACATAAAATAGTTGCATA+TGG + chr6.2:77876044-77876063 MS.gene05240:CDS 25.0%
! CTAGACATTAAACTCTTAAA+GGG + chr6.2:77874007-77874026 MS.gene05240:intron 25.0%
! GGTTAACTTAGTTAATTAGA+TGG + chr6.2:77874192-77874211 MS.gene05240:intron 25.0%
! GTAAATAGATTAGTGAATAG+TGG - chr6.2:77874450-77874469 None:intergenic 25.0%
! TACTTCATAGATTACAACAA+TGG + chr6.2:77875972-77875991 MS.gene05240:CDS 25.0%
! TAGACATTAAACTCTTAAAG+GGG + chr6.2:77874008-77874027 MS.gene05240:intron 25.0%
! TATACGCAGAAATTTCAAAA+GGG + chr6.2:77873824-77873843 MS.gene05240:intron 25.0%
! TCAATTGTATCTATCAATGT+AGG + chr6.2:77873106-77873125 MS.gene05240:intron 25.0%
! TGATTATGAGTCACTATATA+GGG - chr6.2:77873495-77873514 None:intergenic 25.0%
! TGGTTATCAATTTATCCAAA+GGG + chr6.2:77875247-77875266 MS.gene05240:CDS 25.0%
! TGTCCTTAGAACATATAATA+AGG + chr6.2:77872769-77872788 MS.gene05240:intron 25.0%
! TGTGAATCTATATATAGGTA+TGG + chr6.2:77875487-77875506 MS.gene05240:intron 25.0%
! TTATACGCAGAAATTTCAAA+AGG + chr6.2:77873823-77873842 MS.gene05240:intron 25.0%
! TTGATCTATATCACTGAAAA+TGG + chr6.2:77875316-77875335 MS.gene05240:CDS 25.0%
! TTGATTATGAGTCACTATAT+AGG - chr6.2:77873496-77873515 None:intergenic 25.0%
!! TAAGAGACATTTTCTTCTTT+TGG + chr6.2:77872640-77872659 MS.gene05240:intron 25.0%
!! TTTTCAGTGATATAGATCAA+TGG - chr6.2:77875316-77875335 None:intergenic 25.0%
!!! ACATTTTTGGATATCTTTTG+AGG - chr6.2:77875998-77876017 None:intergenic 25.0%
!!! ATGTATCCAATTTTTTTACC+AGG + chr6.2:77875862-77875881 MS.gene05240:intron 25.0%
!!! CATTGTTGACTTTTTTTTAG+AGG + chr6.2:77874057-77874076 MS.gene05240:intron 25.0%
!!! TGTATCCAATTTTTTTACCA+GGG + chr6.2:77875863-77875882 MS.gene05240:intron 25.0%
!!! TTATTTTAGTGTAGATCAAC+AGG - chr6.2:77875282-77875301 None:intergenic 25.0%
!!! TTTTGTTACCCTTTTTCATT+GGG + chr6.2:77873138-77873157 MS.gene05240:CDS 25.0%
AAATTTCAAAAGGGCAAGAT+AGG + chr6.2:77873833-77873852 MS.gene05240:CDS 30.0%
AAGAATGTATTGCAGGTATA+TGG + chr6.2:77874606-77874625 MS.gene05240:intron 30.0%
AATACTTTCCTAATTGCAGA+AGG + chr6.2:77872947-77872966 MS.gene05240:intron 30.0%
AATCCTTTGTGTATCTTCAA+GGG - chr6.2:77875549-77875568 None:intergenic 30.0%
AATTTCAAAAGGGCAAGATA+GGG + chr6.2:77873834-77873853 MS.gene05240:CDS 30.0%
ATAACGATGGTATTCATCAA+CGG - chr6.2:77872409-77872428 None:intergenic 30.0%
ATACTTCCAAGTAAGAAACT+AGG + chr6.2:77872615-77872634 MS.gene05240:intron 30.0%
ATCAAGCAAAGCTTGTAAAA+GGG + chr6.2:77874704-77874723 MS.gene05240:CDS 30.0%
CAATGAAAAAGGGTAACAAA+AGG - chr6.2:77873139-77873158 None:intergenic 30.0%
CCTAGACATTAAACTCTTAA+AGG + chr6.2:77874006-77874025 MS.gene05240:intron 30.0%
GATATGGGTGTTTAAAAAAG+TGG - chr6.2:77874139-77874158 None:intergenic 30.0%
GATGTGAGTTACACTATATT+TGG - chr6.2:77873208-77873227 None:intergenic 30.0%
TACACATGGTAATAGTTAGA+GGG - chr6.2:77873287-77873306 None:intergenic 30.0%
TACTTCCAAGTAAGAAACTA+GGG + chr6.2:77872616-77872635 MS.gene05240:intron 30.0%
TATATGGATCCATTGACAAT+TGG + chr6.2:77874622-77874641 MS.gene05240:CDS 30.0%
TATCAAGCAAAGCTTGTAAA+AGG + chr6.2:77874703-77874722 MS.gene05240:CDS 30.0%
TGATGAATACCATCGTTATA+AGG + chr6.2:77872410-77872429 MS.gene05240:CDS 30.0%
TGTCTACAAAACTAAGTATC+AGG + chr6.2:77873542-77873561 MS.gene05240:CDS 30.0%
! ACACACAAATTAAAGCATCA+TGG - chr6.2:77872459-77872478 None:intergenic 30.0%
! AGTATTGAACCTTATAACGA+TGG - chr6.2:77872422-77872441 None:intergenic 30.0%
! AGTTCATATTTGATGACCTT+TGG - chr6.2:77873041-77873060 None:intergenic 30.0%
! CCTTTAAGAGTTTAATGTCT+AGG - chr6.2:77874009-77874028 None:intergenic 30.0%
! CTTATAGATTTTCCATCTCT+TGG + chr6.2:77872586-77872605 MS.gene05240:CDS 30.0%
! TCCAATTTTGTATCATAGAG+TGG - chr6.2:77873887-77873906 None:intergenic 30.0%
! TTGATGACTTCACTTAATTC+AGG - chr6.2:77874784-77874803 None:intergenic 30.0%
! TTGGTGATAGAGTAAAGAAT+TGG + chr6.2:77873349-77873368 MS.gene05240:CDS 30.0%
!! AAAGGGTCCTTTGATTTTAT+TGG + chr6.2:77874721-77874740 MS.gene05240:CDS 30.0%
!! ATTGGTTGATAACTTCGAAT+GGG + chr6.2:77875920-77875939 MS.gene05240:CDS 30.0%
!! CTTTTGTTACCCTTTTTCAT+TGG + chr6.2:77873137-77873156 MS.gene05240:CDS 30.0%
!! GAGCTTTGCTTTAAAGAATT+TGG + chr6.2:77873330-77873349 MS.gene05240:CDS 30.0%
!! GCTTGATATTTTGAGAACTT+TGG - chr6.2:77874691-77874710 None:intergenic 30.0%
!! TAGTGAATAGTGGATTACTT+AGG - chr6.2:77874440-77874459 None:intergenic 30.0%
!! TTTCTTACTTGGAAGTATTC+TGG - chr6.2:77872613-77872632 None:intergenic 30.0%
!!! ATGTAAAAGGGTATTTTGCA+TGG + chr6.2:77875895-77875914 MS.gene05240:CDS 30.0%
!!! CTTAGTTTTGTAGACATTGA+CGG - chr6.2:77873538-77873557 None:intergenic 30.0%
ACCATCCCTGGTAAAAAAAT+TGG - chr6.2:77875871-77875890 None:intergenic 35.0%
AGGTGCATTAGTTGCATAAT+GGG - chr6.2:77874764-77874783 None:intergenic 35.0%
AGTGATCAATCTGGTGATAT+GGG - chr6.2:77874154-77874173 None:intergenic 35.0%
AGTTTAGCAGTAGAATGTGA+TGG - chr6.2:77872347-77872366 None:intergenic 35.0%
ATATTTCAACATGTGCCCTA+AGG + chr6.2:77872887-77872906 MS.gene05240:intron 35.0%
ATCCAAAAATGTCAGCTATC+TGG + chr6.2:77876006-77876025 MS.gene05240:CDS 35.0%
CAATCCTTTGTGTATCTTCA+AGG - chr6.2:77875550-77875569 None:intergenic 35.0%
CATATATACACACACGCAAT+AGG - chr6.2:77875838-77875857 None:intergenic 35.0%
CATGTGATTAGTGATCAATC+TGG - chr6.2:77874163-77874182 None:intergenic 35.0%
CCATCCAAACATGAAATCAA+TGG - chr6.2:77873930-77873949 None:intergenic 35.0%
CTACACATGGTAATAGTTAG+AGG - chr6.2:77873288-77873307 None:intergenic 35.0%
CTACACTATATTACACATGC+AGG + chr6.2:77875213-77875232 MS.gene05240:intron 35.0%
CTCTAACTATTACCATGTGT+AGG + chr6.2:77873286-77873305 MS.gene05240:intron 35.0%
GATGATCAAGGACATCAATA+TGG + chr6.2:77872560-77872579 MS.gene05240:CDS 35.0%
GCCACTCTATGATACAAAAT+TGG + chr6.2:77873883-77873902 MS.gene05240:CDS 35.0%
TAAGCTTTCCTTCTGCAATT+AGG - chr6.2:77872958-77872977 None:intergenic 35.0%
TAGTGATCAATCTGGTGATA+TGG - chr6.2:77874155-77874174 None:intergenic 35.0%
TATTCATCTTCAAGTGTCTG+AGG - chr6.2:77873169-77873188 None:intergenic 35.0%
TATTGTGCAAGTAATCACAC+AGG + chr6.2:77874377-77874396 MS.gene05240:intron 35.0%
TCACTACATCTTCAAACATG+TGG - chr6.2:77874526-77874545 None:intergenic 35.0%
TCGAAAATCATTCCTACACA+TGG - chr6.2:77873301-77873320 None:intergenic 35.0%
! AAATGCTAACTTGTGCCTTA+GGG - chr6.2:77872905-77872924 None:intergenic 35.0%
! AACCAGATAGCTGACATTTT+TGG - chr6.2:77876011-77876030 None:intergenic 35.0%
! CAATGAGCTACACCATTTTA+TGG - chr6.2:77874042-77874061 None:intergenic 35.0%
!! ACTCACTTTTGAATACTCTC+TGG + chr6.2:77873722-77873741 MS.gene05240:intron 35.0%
!! AGAGCCATTGATTTCATGTT+TGG + chr6.2:77873923-77873942 MS.gene05240:CDS 35.0%
!! CATTGGTTGATAACTTCGAA+TGG + chr6.2:77875919-77875938 MS.gene05240:CDS 35.0%
!! CCATTGATTTCATGTTTGGA+TGG + chr6.2:77873927-77873946 MS.gene05240:CDS 35.0%
!! TTGGTTGATAACTTCGAATG+GGG + chr6.2:77875921-77875940 MS.gene05240:CDS 35.0%
!!! TCCAATTTTTTTACCAGGGA+TGG + chr6.2:77875867-77875886 MS.gene05240:intron 35.0%
AAGGTGCATCTCTTAGACTT+GGG + chr6.2:77873604-77873623 MS.gene05240:intron 40.0%
AAGTATTCTGGACCAAGAGA+TGG - chr6.2:77872601-77872620 None:intergenic 40.0%
AGGAAGGTCCCAATGAAAAA+GGG - chr6.2:77873149-77873168 None:intergenic 40.0%
AGGGATGGTGTGAATGTAAA+AGG + chr6.2:77875882-77875901 MS.gene05240:intron 40.0%
AGTCACTATATAGGGTTCAG+TGG - chr6.2:77873487-77873506 None:intergenic 40.0%
ATGCCCTTGAAGATACACAA+AGG + chr6.2:77875543-77875562 MS.gene05240:CDS 40.0%
ATTCTCATGCACATACCGTT+GGG - chr6.2:77875060-77875079 None:intergenic 40.0%
ATTGCAGAAGGAAAGCTTAG+TGG + chr6.2:77872959-77872978 MS.gene05240:intron 40.0%
CAGGTGCATTAGTTGCATAA+TGG - chr6.2:77874765-77874784 None:intergenic 40.0%
CTCTCGCTACATAAACTTGT+TGG - chr6.2:77873691-77873710 None:intergenic 40.0%
CTTAGCCCTAGTTTCTTACT+TGG - chr6.2:77872624-77872643 None:intergenic 40.0%
GATAACTTCGAATGGGGTTT+AGG + chr6.2:77875927-77875946 MS.gene05240:CDS 40.0%
GATCACACTGAATGAACCAT+GGG + chr6.2:77873371-77873390 MS.gene05240:CDS 40.0%
GGAAGATGTTGAGATGATCA+AGG + chr6.2:77872548-77872567 MS.gene05240:intron 40.0%
GGATAACATTAGTGTGTCAC+TGG + chr6.2:77873855-77873874 MS.gene05240:CDS 40.0%
GGATAGTCTCCAATTGTCAA+TGG - chr6.2:77874634-77874653 None:intergenic 40.0%
GGGATGGTGTGAATGTAAAA+GGG + chr6.2:77875883-77875902 MS.gene05240:intron 40.0%
TATTCTCATGCACATACCGT+TGG - chr6.2:77875061-77875080 None:intergenic 40.0%
TCCATCAACATAAGCATGCT+TGG - chr6.2:77873403-77873422 None:intergenic 40.0%
TGGCAAAACTTGAATTGCAC+CGG + chr6.2:77873450-77873469 MS.gene05240:CDS 40.0%
! AACATTAGTGTGTCACTGGA+CGG + chr6.2:77873859-77873878 MS.gene05240:CDS 40.0%
! AATGTGATGGTGCTTTGAAC+CGG - chr6.2:77872334-77872353 None:intergenic 40.0%
! AGCTTAGTGGAGGTGTAAAT+AGG + chr6.2:77872972-77872991 MS.gene05240:CDS 40.0%
! GAAATGCTAACTTGTGCCTT+AGG - chr6.2:77872906-77872925 None:intergenic 40.0%
! GCTTAGTGGAGGTGTAAATA+GGG + chr6.2:77872973-77872992 MS.gene05240:CDS 40.0%
! TTTTACATTCACACCATCCC+TGG - chr6.2:77875883-77875902 None:intergenic 40.0%
!! AGGGTATTTTGCATGGTCAT+TGG + chr6.2:77875902-77875921 MS.gene05240:CDS 40.0%
!! GTGCAATTCAAGTTTTGCCA+AGG - chr6.2:77873450-77873469 None:intergenic 40.0%
AACAGGTCGTGAATACCCTT+TGG - chr6.2:77875265-77875284 None:intergenic 45.0%
AACATAAGCATGCTTGGCGA+AGG - chr6.2:77873397-77873416 None:intergenic 45.0%
AAGTGCATCTGTGTTGTAGC+TGG - chr6.2:77874809-77874828 None:intergenic 45.0%
ACTAAGGATCTCATGGAGCT+TGG - chr6.2:77874655-77874674 None:intergenic 45.0%
ACTCCCTACTAAGGATCTCA+TGG - chr6.2:77874662-77874681 None:intergenic 45.0%
AGCTCCATGAGATCCTTAGT+AGG + chr6.2:77874655-77874674 MS.gene05240:CDS 45.0%
AGTGCATCTGTGTTGTAGCT+GGG - chr6.2:77874808-77874827 None:intergenic 45.0%
ATCAATGAGTTGCTGGCCAA+AGG + chr6.2:77873022-77873041 MS.gene05240:CDS 45.0%
CAAAACTTGAATTGCACCGG+TGG + chr6.2:77873453-77873472 MS.gene05240:CDS 45.0%
CAACCTCATCAATGAGTTGC+TGG + chr6.2:77873015-77873034 MS.gene05240:CDS 45.0%
CAAGGTGCATCTCTTAGACT+TGG + chr6.2:77873603-77873622 MS.gene05240:intron 45.0%
CAATAGGTATTCCATTGCGC+TGG - chr6.2:77875036-77875055 None:intergenic 45.0%
CAGCGCAATGGAATACCTAT+TGG + chr6.2:77875034-77875053 MS.gene05240:CDS 45.0%
CATCTTCAAGTGTCTGAGGA+AGG - chr6.2:77873165-77873184 None:intergenic 45.0%
GAGGAAGGTCCCAATGAAAA+AGG - chr6.2:77873150-77873169 None:intergenic 45.0%
GCCAAGCATGCTTATGTTGA+TGG + chr6.2:77873399-77873418 MS.gene05240:CDS 45.0%
GCTCCATGAGATCCTTAGTA+GGG + chr6.2:77874656-77874675 MS.gene05240:CDS 45.0%
GGATCACACTGAATGAACCA+TGG + chr6.2:77873370-77873389 MS.gene05240:CDS 45.0%
TGGAATACCTATTGGCCCAA+CGG + chr6.2:77875042-77875061 MS.gene05240:CDS 45.0%
TTAGGCTACACTTCGAGGTT+TGG + chr6.2:77875945-77875964 MS.gene05240:CDS 45.0%
! AGTGGAGGTGTAAATAGGGA+AGG + chr6.2:77872977-77872996 MS.gene05240:CDS 45.0%
! TGGTAATCGACTCCCTACTA+AGG - chr6.2:77874671-77874690 None:intergenic 45.0%
!! CTTCAAGGGCATTCTCAAGA+GGG - chr6.2:77875535-77875554 None:intergenic 45.0%
!! TCTTCAAGGGCATTCTCAAG+AGG - chr6.2:77875536-77875555 None:intergenic 45.0%
!!! TTATGATATTTAATTATTTT+TGG - chr6.2:77873239-77873258 None:intergenic 5.0%
GCAGAAGGAAAGCTTAGTGG+AGG + chr6.2:77872962-77872981 MS.gene05240:intron 50.0%
GGGGAACGCTGACCATAAAA+TGG + chr6.2:77874027-77874046 MS.gene05240:intron 50.0%
TGGCCAGCAACTCATTGATG+AGG - chr6.2:77873021-77873040 None:intergenic 50.0%
TTACACATGCAGGCTGCTTC+AGG + chr6.2:77875223-77875242 MS.gene05240:intron 50.0%
TTCAGTGGCAGAATCTCCAC+CGG - chr6.2:77873472-77873491 None:intergenic 50.0%
! TTTTTCACAGGCCAGCGCAA+TGG + chr6.2:77875022-77875041 MS.gene05240:intron 50.0%
ACATGCAGGCTGCTTCAGGA+TGG + chr6.2:77875227-77875246 MS.gene05240:intron 55.0%
GCACATACCGTTGGGCCAAT+AGG - chr6.2:77875052-77875071 None:intergenic 55.0%
GGGGTTTAGGCTACACTTCG+AGG + chr6.2:77875940-77875959 MS.gene05240:CDS 55.0%
! GCATTCTCAAGAGGGAGTGC+TGG - chr6.2:77875527-77875546 None:intergenic 55.0%
! GTTGATGGAAGCTTCGCACC+TGG + chr6.2:77873414-77873433 MS.gene05240:CDS 55.0%
CACCTGGACGATGTTCGCCT+TGG + chr6.2:77873430-77873449 MS.gene05240:CDS 60.0%
TGCCAAGGCGAACATCGTCC+AGG - chr6.2:77873435-77873454 None:intergenic 60.0%
GCATGCTTGGCGAAGGCCCA+TGG - chr6.2:77873390-77873409 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 77872327 77876079 77872327 ID=MS.gene05240
chr6.2 mRNA 77872327 77876079 77872327 ID=MS.gene05240.t1;Parent=MS.gene05240
chr6.2 exon 77872327 77872431 77872327 ID=MS.gene05240.t1.exon1;Parent=MS.gene05240.t1
chr6.2 CDS 77872327 77872431 77872327 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77872549 77872624 77872549 ID=MS.gene05240.t1.exon2;Parent=MS.gene05240.t1
chr6.2 CDS 77872549 77872624 77872549 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77872966 77873043 77872966 ID=MS.gene05240.t1.exon3;Parent=MS.gene05240.t1
chr6.2 CDS 77872966 77873043 77872966 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77873128 77873215 77873128 ID=MS.gene05240.t1.exon4;Parent=MS.gene05240.t1
chr6.2 CDS 77873128 77873215 77873128 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77873308 77873563 77873308 ID=MS.gene05240.t1.exon5;Parent=MS.gene05240.t1
chr6.2 CDS 77873308 77873563 77873308 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77873833 77873948 77873833 ID=MS.gene05240.t1.exon6;Parent=MS.gene05240.t1
chr6.2 CDS 77873833 77873948 77873833 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77874621 77874841 77874621 ID=MS.gene05240.t1.exon7;Parent=MS.gene05240.t1
chr6.2 CDS 77874621 77874841 77874621 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77875032 77875063 77875032 ID=MS.gene05240.t1.exon8;Parent=MS.gene05240.t1
chr6.2 CDS 77875032 77875063 77875032 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77875235 77875337 77875235 ID=MS.gene05240.t1.exon9;Parent=MS.gene05240.t1
chr6.2 CDS 77875235 77875337 77875235 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77875504 77875612 77875504 ID=MS.gene05240.t1.exon10;Parent=MS.gene05240.t1
chr6.2 CDS 77875504 77875612 77875504 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
chr6.2 exon 77875884 77876079 77875884 ID=MS.gene05240.t1.exon11;Parent=MS.gene05240.t1
chr6.2 CDS 77875884 77876079 77875884 ID=cds.MS.gene05240.t1;Parent=MS.gene05240.t1
Gene Sequence

>MS.gene05240

ATGTCCGGTTCAAAGCACCATCACATTCTACTGCTAAACTTGTCAGATAAAATAAAGGACAGAAGTAATGGAGACATAGCCGTTGATGAATACCATCGTTATAAGGTTCAATACTATGCTCTAACATGTCCATGATGCTTTAATTTGTGTGTTAATAATATTAATATAATAATAAAAACATTGATGCTAGAGCATAATTAAGACATTATTGATATAATGCAGGAAGATGTTGAGATGATCAAGGACATCAATATGGATGCTTATAGATTTTCCATCTCTTGGTCCAGAATACTTCCAAGTAAGAAACTAGGGCTAAGAGACATTTTCTTCTTTTGGAAACTTTTGAACATTACCTTTCCATAAGATTTTTTTTTTTAATGTTTATAATTGATAATAAATTTATAATTATTATAAATTGGCAAATTCTTATCATGCTAACATGTGTCCTTAGAACATATAATAAGGTTTTTACAAGTAGTAAATATTTATTGTAAAAAAGTAATTATAAAGGACTTGAAAAATAAATTTGCACAATTTTCAATACAGAATTTTCATTAAAAATATTTCAACATGTGCCCTAAGGCACAAGTTAGCATTTCTCAATACTTATTTACATGTTGAATACTTTCCTAATTGCAGAAGGAAAGCTTAGTGGAGGTGTAAATAGGGAAGGAATTAAGTATTACAACAACCTCATCAATGAGTTGCTGGCCAAAGGTCATCAAATATGAACTTAATGTTTGTCTTTTTTGTTTTCAATTATTTTTGTCTAAAATATTTCAATTGTATCTATCAATGTAGGTCTTCAACCTTTTGTTACCCTTTTTCATTGGGACCTTCCTCAGACACTTGAAGATGAATATAATGGCTTTTTAAGTCCAAATATAGTGTAACTCACATCCCTTATGACCAAAAATAATTAAATATCATAAAGTTAGGCATATCATCATGTGTTTTCCCTCTAACTATTACCATGTGTAGGAATGATTTTCGAGACTATGCAGAGCTTTGCTTTAAAGAATTTGGTGATAGAGTAAAGAATTGGATCACACTGAATGAACCATGGGCCTTCGCCAAGCATGCTTATGTTGATGGAAGCTTCGCACCTGGACGATGTTCGCCTTGGCAAAACTTGAATTGCACCGGTGGAGATTCTGCCACTGAACCCTATATAGTGACTCATAATCAAATACTTGCTCATGCATCTGCCGTCAATGTCTACAAAACTAAGTATCAGGTATTATTTTATTTTAACTAAAAGAATTAAATCAATTCACAAGGTGCATCTCTTAGACTTGGGTTATGCGCTATATATGATAGTGTATGATAGATTTTCGAATTTAGATTGGACTGAAATCAATCCAACAAGTTTATGTAGCGAGAGTTGTTAGCAACACTCACTTTTGAATACTCTCTGGCACTCACTCATATTCTAACACTAAGTGTTTCTTTAAACATTTAATTTACTCACATTGAGACCTAAACTTTCCTTTAATTTATACGCAGAAATTTCAAAAGGGCAAGATAGGGATAACATTAGTGTGTCACTGGACGGTGCCACTCTATGATACAAAATTGGATCATCATGCTTCACAAAGAGCCATTGATTTCATGTTTGGATGGTAATTAACTACTTTATGAACCTTAAATTATATATGGAACTCAACTACATTAATTATCCTAGACATTAAACTCTTAAAGGGGAACGCTGACCATAAAATGGTGTAGCTCATTGTTGACTTTTTTTTAGAGGCGCATTGTTGACATTTTTATTTATTATATTTATCGAAAAAAATTGTTTATGGACATCCACTTTTTTAAACACCCATATCACCAGATTGATCACTAATCACATGTAAAAATATGGTTAACTTAGTTAATTAGATGGTTAGTTCAATTTACCTTAAAAATTGTGGTTATTTCATGTAGTTGAATTAATAACAATTTGACTATAATTTAATATCATGATTGAATGAAATAGTAAGTTTATTGATTGAATATTGAATGTACAATTTCTATTTATATACAAAGGAGACTCTACACGCTAGCTTATTGTGCAAGTAATCACACAGGATTACTAAACTAAACTAGCTAACTAGATAACTTGTTGCCTAAGTAATCCACTATTCACTAATCTATTTACTAGTATCTTCATTTGCAATAATTAAGTTAATCATCTATTCAATTGAATTATAACCACATGTTTGAAGATGTAGTGAGCATGTGCAAAAAGAAATTGTTGTATATGTATCATTACTCTTATCAAAATAGCTATTTAAAAGAATGTATTGCAGGTATATGGATCCATTGACAATTGGAGACTATCCAAGCTCCATGAGATCCTTAGTAGGGAGTCGATTACCAAAGTTCTCAAAATATCAAGCAAAGCTTGTAAAAGGGTCCTTTGATTTTATTGGATTAAACTATTACACTTCCCATTATGCAACTAATGCACCTGAATTAAGTGAAGTCATCAAGCCCAGCTACAACACAGATGCACTTGTTAGTTTTACAAGTAAGTGTGTTTAATGATGAATGAAATTTTTAGTAATACAACACACTTTACTCACTATCACATCTTAAACGTGTGACAAAATGAAAAAAAATTTCTTCTCTAATACATCAAAGATATACAATTACATTTTTTTTAGGAATTATATATATTTTTGTTAGCAATAGATTATGATATTATATTTTTTTCACAGGCCAGCGCAATGGAATACCTATTGGCCCAACGGTATGTGCATGAGAATATAATTGATATGAGAAATGCTAAGAACATTCTCTTTCTAGCACTCTCTTTAACACTAACATTCACTCTTCTACTATGTGAAACTCATTAGTTTATGTTTTTAATTTTTTTCAAAGGGTATTTACATTGTAGCTCTACACTATATTACACATGCAGGCTGCTTCAGGATGGTTATCAATTTATCCAAAGGGTATTCACGACCTGTTGATCTACACTAAAATAAAGTACAACAATCCATTGATCTATATCACTGAAAATGGTAATACCAATACACTATATTTATTATTTATTTTAAATCTATTTCTTTAAGCAAAAATTAAGATTTGATTATGCTAAAATTTGAATAGAGAATATGTGCTGATGTATTGATTTCTTACTAATATACAATTTGATGGTAAACAACTATATTGTGAATCTATATATAGGTATGGATGACTTTAATGATCCAGCACTCCCTCTTGAGAATGCCCTTGAAGATACACAAAGGATTGATTACTATTATGATCATCTCTACTATCTTCAAACTGCAATAAAGTATGTGCCCTCAAAACATAACAAAAATTAAATTAATGATTTTTTTGACCAAAAAAAAGTTAAATTAATGATAGAAATGTATAGAACAATAATATAAATTTTATCATTAATTCTCTATATATTTATGACTAAACTCGTGACACATTTTATTTTTTTTCTATATAGAAATTTAGATACTAATTTTATTTTTGTATAGTGCAAATTCCTTCTTTATCTAATTAACCTATTGCGTGTGTGTATATATGTTTAATGTATCCAATTTTTTTACCAGGGATGGTGTGAATGTAAAAGGGTATTTTGCATGGTCATTGGTTGATAACTTCGAATGGGGTTTAGGCTACACTTCGAGGTTTGGAATATACTTCATAGATTACAACAATGGCCTCAAAAGATATCCAAAAATGTCAGCTATCTGGTTTAAGAATTTTCTACAACATAAAATAGTTGCATATGGTGATTCGCGCTAA

Protein sequence

>MS.gene05240.t1

MSGSKHHHILLLNLSDKIKDRSNGDIAVDEYHRYKEDVEMIKDINMDAYRFSISWSRILPKGKLSGGVNREGIKYYNNLINELLAKGLQPFVTLFHWDLPQTLEDEYNGFLSPNIVNDFRDYAELCFKEFGDRVKNWITLNEPWAFAKHAYVDGSFAPGRCSPWQNLNCTGGDSATEPYIVTHNQILAHASAVNVYKTKYQKFQKGKIGITLVCHWTVPLYDTKLDHHASQRAIDFMFGWYMDPLTIGDYPSSMRSLVGSRLPKFSKYQAKLVKGSFDFIGLNYYTSHYATNAPELSEVIKPSYNTDALVSFTSQRNGIPIGPTAASGWLSIYPKGIHDLLIYTKIKYNNPLIYITENGMDDFNDPALPLENALEDTQRIDYYYDHLYYLQTAIKDGVNVKGYFAWSLVDNFEWGLGYTSRFGIYFIDYNNGLKRYPKMSAIWFKNFLQHKIVAYGDSR